HEADER SIGNALING PROTEIN/PROTEIN BINDING 26-MAY-17 5VZ4 TITLE RECEPTOR-GROWTH FACTOR CRYSTAL STRUCTURE AT 2.20 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 197-308; COMPND 5 SYNONYM: GDF-15, MACROPHAGE INHIBITORY CYTOKINE 1, MIC-1, NSAID- COMPND 6 ACTIVATED GENE 1 PROTEIN, NAG-1, NSAID-REGULATED GENE 1 PROTEIN, NRG- COMPND 7 1, PLACENTAL TGF-BETA, PLACENTAL BONE MORPHOGENETIC PROTEIN, PROSTATE COMPND 8 DIFFERENTIATION FACTOR; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: GDNF FAMILY RECEPTOR ALPHA-LIKE; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 115-351; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF15, MIC1, PDF, PLAB, PTGFB; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: GFRAL, C6ORF144, UNQ9356/PRO34128; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS RECEPTOR, GROWTH FACTOR, SIGNALING PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.LAKSHMINARASIMHAN,A.WHITE,R.K.SUTO REVDAT 4 04-OCT-23 5VZ4 1 REMARK REVDAT 3 25-OCT-17 5VZ4 1 JRNL REVDAT 2 11-OCT-17 5VZ4 1 JRNL REVDAT 1 27-SEP-17 5VZ4 0 JRNL AUTH J.Y.HSU,S.CRAWLEY,M.CHEN,D.A.AYUPOVA,D.A.LINDHOUT,J.HIGBEE, JRNL AUTH 2 A.KUTACH,W.JOO,Z.GAO,D.FU,C.TO,K.MONDAL,B.LI,A.KEKATPURE, JRNL AUTH 3 M.WANG,T.LAIRD,G.HORNER,J.CHAN,M.MCENTEE,M.LOPEZ, JRNL AUTH 4 D.LAKSHMINARASIMHAN,A.WHITE,S.P.WANG,J.YAO,J.YIE,H.MATERN, JRNL AUTH 5 M.SOLLOWAY,R.HALDANKAR,T.PARSONS,J.TANG,W.D.SHEN, JRNL AUTH 6 Y.ALICE CHEN,H.TIAN,B.B.ALLAN JRNL TITL NON-HOMEOSTATIC BODY WEIGHT REGULATION THROUGH A JRNL TITL 2 BRAINSTEM-RESTRICTED RECEPTOR FOR GDF15. JRNL REF NATURE V. 550 255 2017 JRNL REFN ESSN 1476-4687 JRNL PMID 28953886 JRNL DOI 10.1038/NATURE24042 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 19330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.22000 REMARK 3 B22 (A**2) : 6.09000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.060 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5VZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20379 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 71.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5VZ3 & 2GH0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 6.0, 1.5 M AMMONIUM REMARK 280 SULFATE, 10% W/V ETHYLENE GLYCOL, 30-MINUTE SOAK IN 0.5 M SODIUM REMARK 280 BROMIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.67600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.38400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.64650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.67600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.38400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.64650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.67600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.38400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.64650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.67600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.38400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.64650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -88.76800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 4 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 GLY B 113 REMARK 465 GLY B 114 REMARK 465 TRP B 115 REMARK 465 ASN B 116 REMARK 465 LEU B 117 REMARK 465 THR B 118 REMARK 465 THR B 119 REMARK 465 ARG B 120 REMARK 465 SER B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 GLY B 124 REMARK 465 PHE B 125 REMARK 465 LYS B 126 REMARK 465 GLY B 127 REMARK 465 MET B 128 REMARK 465 TYR B 319 REMARK 465 PRO B 320 REMARK 465 THR B 321 REMARK 465 LEU B 322 REMARK 465 SER B 323 REMARK 465 ASN B 324 REMARK 465 VAL B 325 REMARK 465 LYS B 326 REMARK 465 GLY B 327 REMARK 465 MET B 328 REMARK 465 ALA B 329 REMARK 465 LEU B 330 REMARK 465 TYR B 331 REMARK 465 THR B 332 REMARK 465 ARG B 333 REMARK 465 LYS B 334 REMARK 465 HIS B 335 REMARK 465 ALA B 336 REMARK 465 ASN B 337 REMARK 465 LYS B 338 REMARK 465 ILE B 339 REMARK 465 THR B 340 REMARK 465 LEU B 341 REMARK 465 THR B 342 REMARK 465 GLY B 343 REMARK 465 PHE B 344 REMARK 465 HIS B 345 REMARK 465 SER B 346 REMARK 465 PRO B 347 REMARK 465 PHE B 348 REMARK 465 ASN B 349 REMARK 465 GLY B 350 REMARK 465 GLU B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 265 CG CD OE1 NE2 REMARK 470 LYS B 314 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 77 CA - CB - SG ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 30.48 -81.24 REMARK 500 PRO A 11 133.53 -34.56 REMARK 500 ASN A 56 -171.94 -176.07 REMARK 500 ALA B 157 -174.93 -50.66 REMARK 500 ASP B 195 94.30 -67.40 REMARK 500 SER B 207 58.04 37.08 REMARK 500 HIS B 253 -120.71 52.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VZ3 RELATED DB: PDB DBREF 5VZ4 A 1 112 UNP Q99988 GDF15_HUMAN 197 308 DBREF 5VZ4 B 115 351 UNP Q6UXV0 GFRAL_HUMAN 115 351 SEQADV 5VZ4 HIS B 107 UNP Q6UXV0 EXPRESSION TAG SEQADV 5VZ4 HIS B 108 UNP Q6UXV0 EXPRESSION TAG SEQADV 5VZ4 HIS B 109 UNP Q6UXV0 EXPRESSION TAG SEQADV 5VZ4 HIS B 110 UNP Q6UXV0 EXPRESSION TAG SEQADV 5VZ4 HIS B 111 UNP Q6UXV0 EXPRESSION TAG SEQADV 5VZ4 HIS B 112 UNP Q6UXV0 EXPRESSION TAG SEQADV 5VZ4 GLY B 113 UNP Q6UXV0 EXPRESSION TAG SEQADV 5VZ4 GLY B 114 UNP Q6UXV0 EXPRESSION TAG SEQRES 1 A 112 ALA ARG ASN GLY ASP HIS CYS PRO LEU GLY PRO GLY ARG SEQRES 2 A 112 CYS CYS ARG LEU HIS THR VAL ARG ALA SER LEU GLU ASP SEQRES 3 A 112 LEU GLY TRP ALA ASP TRP VAL LEU SER PRO ARG GLU VAL SEQRES 4 A 112 GLN VAL THR MET CYS ILE GLY ALA CYS PRO SER GLN PHE SEQRES 5 A 112 ARG ALA ALA ASN MET HIS ALA GLN ILE LYS THR SER LEU SEQRES 6 A 112 HIS ARG LEU LYS PRO ASP THR VAL PRO ALA PRO CYS CYS SEQRES 7 A 112 VAL PRO ALA SER TYR ASN PRO MET VAL LEU ILE GLN LYS SEQRES 8 A 112 THR ASP THR GLY VAL SER LEU GLN THR TYR ASP ASP LEU SEQRES 9 A 112 LEU ALA LYS ASP CYS HIS CYS ILE SEQRES 1 B 245 HIS HIS HIS HIS HIS HIS GLY GLY TRP ASN LEU THR THR SEQRES 2 B 245 ARG SER HIS HIS GLY PHE LYS GLY MET TRP SER CYS LEU SEQRES 3 B 245 GLU VAL ALA GLU ALA CYS VAL GLY ASP VAL VAL CYS ASN SEQRES 4 B 245 ALA GLN LEU ALA SER TYR LEU LYS ALA CYS SER ALA ASN SEQRES 5 B 245 GLY ASN PRO CYS ASP LEU LYS GLN CYS GLN ALA ALA ILE SEQRES 6 B 245 ARG PHE PHE TYR GLN ASN ILE PRO PHE ASN ILE ALA GLN SEQRES 7 B 245 MET LEU ALA PHE CYS ASP CYS ALA GLN SER ASP ILE PRO SEQRES 8 B 245 CYS GLN GLN SER LYS GLU ALA LEU HIS SER LYS THR CYS SEQRES 9 B 245 ALA VAL ASN MET VAL PRO PRO PRO THR CYS LEU SER VAL SEQRES 10 B 245 ILE ARG SER CYS GLN ASN ASP GLU LEU CYS ARG ARG HIS SEQRES 11 B 245 TYR ARG THR PHE GLN SER LYS CYS TRP GLN ARG VAL THR SEQRES 12 B 245 ARG LYS CYS HIS GLU ASP GLU ASN CYS ILE SER THR LEU SEQRES 13 B 245 SER LYS GLN ASP LEU THR CYS SER GLY SER ASP ASP CYS SEQRES 14 B 245 LYS ALA ALA TYR ILE ASP ILE LEU GLY THR VAL LEU GLN SEQRES 15 B 245 VAL GLN CYS THR CYS ARG THR ILE THR GLN SER GLU GLU SEQRES 16 B 245 SER LEU CYS LYS ILE PHE GLN HIS MET LEU HIS ARG LYS SEQRES 17 B 245 SER CYS PHE ASN TYR PRO THR LEU SER ASN VAL LYS GLY SEQRES 18 B 245 MET ALA LEU TYR THR ARG LYS HIS ALA ASN LYS ILE THR SEQRES 19 B 245 LEU THR GLY PHE HIS SER PRO PHE ASN GLY GLU HET BR A 201 1 HET BR A 202 1 HET EDO A 203 4 HET EDO A 204 4 HET SO4 B 401 5 HET SO4 B 402 5 HET EDO B 403 4 HETNAM BR BROMIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BR 2(BR 1-) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 7 SO4 2(O4 S 2-) FORMUL 10 HOH *144(H2 O) HELIX 1 AA1 LEU A 24 GLY A 28 1 5 HELIX 2 AA2 ASN A 56 LYS A 69 1 14 HELIX 3 AA3 SER B 130 GLY B 140 1 11 HELIX 4 AA4 ASP B 141 CYS B 155 1 15 HELIX 5 AA5 ASP B 163 GLN B 176 1 14 HELIX 6 AA6 PRO B 179 CYS B 189 1 11 HELIX 7 AA7 ASP B 195 HIS B 206 1 12 HELIX 8 AA8 SER B 207 VAL B 212 1 6 HELIX 9 AA9 THR B 219 ASN B 229 1 11 HELIX 10 AB1 ASP B 230 TRP B 245 1 16 HELIX 11 AB2 TRP B 245 HIS B 253 1 9 HELIX 12 AB3 ASP B 255 THR B 261 1 7 HELIX 13 AB4 SER B 272 ASP B 281 1 10 HELIX 14 AB5 THR B 285 VAL B 289 5 5 HELIX 15 AB6 GLU B 300 HIS B 312 1 13 HELIX 16 AB7 ARG B 313 CYS B 316 5 4 SHEET 1 AA1 2 ARG A 16 SER A 23 0 SHEET 2 AA1 2 GLU A 38 ILE A 45 -1 O MET A 43 N HIS A 18 SHEET 1 AA2 3 VAL A 33 SER A 35 0 SHEET 2 AA2 3 CYS A 77 LYS A 91 -1 O ILE A 89 N SER A 35 SHEET 3 AA2 3 VAL A 96 ILE A 112 -1 O TYR A 101 N MET A 86 SSBOND 1 CYS A 7 CYS A 14 1555 1555 2.05 SSBOND 2 CYS A 15 CYS A 78 1555 1555 2.04 SSBOND 3 CYS A 44 CYS A 109 1555 1555 2.10 SSBOND 4 CYS A 48 CYS A 111 1555 1555 2.10 SSBOND 5 CYS B 131 CYS B 189 1555 1555 2.10 SSBOND 6 CYS B 138 CYS B 144 1555 1555 2.13 SSBOND 7 CYS B 155 CYS B 167 1555 1555 2.08 SSBOND 8 CYS B 162 CYS B 210 1555 1555 1.99 SSBOND 9 CYS B 191 CYS B 198 1555 1555 2.10 SSBOND 10 CYS B 220 CYS B 291 1555 1555 2.06 SSBOND 11 CYS B 227 CYS B 233 1555 1555 2.10 SSBOND 12 CYS B 244 CYS B 275 1555 1555 2.07 SSBOND 13 CYS B 252 CYS B 258 1555 1555 2.09 SSBOND 14 CYS B 269 CYS B 316 1555 1555 2.08 SSBOND 15 CYS B 293 CYS B 304 1555 1555 2.15 CISPEP 1 SER A 35 PRO A 36 0 1.83 CISPEP 2 GLY B 159 ASN B 160 0 -0.26 CISPEP 3 ASN B 160 PRO B 161 0 6.75 CISPEP 4 VAL B 215 PRO B 216 0 -13.27 SITE 1 AC1 1 HIS A 18 SITE 1 AC2 3 LYS A 69 ASP A 71 THR A 72 SITE 1 AC3 5 LEU A 17 ARG A 53 ASP A 108 CYS A 109 SITE 2 AC3 5 HOH A 307 SITE 1 AC4 5 SER A 82 LYS A 107 ASP A 108 HOH A 323 SITE 2 AC4 5 HOH A 341 SITE 1 AC5 4 THR B 292 CYS B 293 ARG B 294 GLN B 308 SITE 1 AC6 3 LYS B 202 ARG B 313 HOH B 551 SITE 1 AC7 3 THR B 219 SER B 222 ARG B 225 CRYST1 75.352 88.768 121.293 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013271 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008244 0.00000