data_5W77 # _entry.id 5W77 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5W77 pdb_00005w77 10.2210/pdb5w77/pdb WWPDB D_1000228513 ? ? BMRB 27144 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 27144 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5W77 _pdbx_database_status.recvd_initial_deposition_date 2017-06-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, X.' 1 ? 'Walters, K.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 4229 _citation.page_last 4229 _citation.title 'Chemical and structural studies provide a mechanistic basis for recognition of the MYC G-quadruplex.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-018-06315-w _citation.pdbx_database_id_PubMed 30315240 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Calabrese, D.R.' 1 ? primary 'Chen, X.' 2 ? primary 'Leon, E.C.' 3 ? primary 'Gaikwad, S.M.' 4 ? primary 'Phyo, Z.' 5 ? primary 'Hewitt, W.M.' 6 ? primary 'Alden, S.' 7 ? primary 'Hilimire, T.A.' 8 ? primary 'He, F.' 9 ? primary 'Michalowski, A.M.' 10 ? primary 'Simmons, J.K.' 11 ? primary 'Saunders, L.B.' 12 ? primary 'Zhang, S.' 13 ? primary 'Connors, D.' 14 ? primary 'Walters, K.J.' 15 ? primary 'Mock, B.A.' 16 0000-0003-2479-4549 primary 'Schneekloth Jr., J.S.' 17 0000-0001-7459-783X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') ; 7008.510 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn '4-[(azepan-1-yl)methyl]-5-hydroxy-2-methyl-N-[4-(trifluoromethyl)phenyl]-1-benzofuran-3-carboxamide' 446.462 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT) (DA)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can TGAGGGTGGGTAGGGTGGGTAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DT n 1 21 DA n 1 22 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5W77 _struct_ref.pdbx_db_accession 5W77 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5W77 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5W77 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 25 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 9WP non-polymer . '4-[(azepan-1-yl)methyl]-5-hydroxy-2-methyl-N-[4-(trifluoromethyl)phenyl]-1-benzofuran-3-carboxamide' ? 'C24 H25 F3 N2 O3' 446.462 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 2 '2D 1H-1H NOESY' 1 isotropic 3 1 3 '2D 1H-1H NOESY' 1 isotropic 4 1 2 '2D 1H-1H NOESY' 2 isotropic 5 1 3 '2D 1H-1H NOESY' 2 isotropic 6 1 2 '2D 1H-1H TOCSY' 1 isotropic 7 1 2 '2D 1H-1H COSY' 1 isotropic 8 1 3 '2D 1H-1H TOCSY' 1 isotropic 9 1 3 '2D 1H-1H COSY' 1 isotropic 10 1 4 '3D 13C half-filtered NOESY' 1 isotropic 11 1 5 '2D 1H-1H TOCSY' 3 isotropic 12 1 5 '2D 1H-1H NOESY' 3 isotropic 13 1 5 '2D 1H-1H COSY' 3 isotropic 14 1 5 '2D 1H-13C HSQC' 3 isotropic 15 1 5 '2D 1H-13C HMBC' 3 isotropic 16 1 6 '1D 1H' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.2 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 298K _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.3 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 25 mM D11- TRIS, 50 mM potassium chloride, 90% H2O/10% D2O ; '90% H2O/10% D2O' 'Free Pu22' solution ? 2 ;0.125 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 0.25 mM (2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine, 25 mM D11- TRIS, 50 mM potassium chloride, 90% H2O/10% D6-DMSO ; '90% H2O/10% D6-DMSO' 'Pu22:DC34=1:2 water' solution ? 3 ;0.25 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 0.50 mM (2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine, 25 mM D11- TRIS, 50 mM potassium chloride, 90% D2O/10% D6-DMSO ; '90% D2O/10% D6-DMSO' 'Pu22:DC34=1:2 D2O' solution ? 4 ;0.25 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 0.5 mM selective 13C-labeling (2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine, 25 mM TRIS, 50 mM potassium chloride, 90% D2O/10% D6-DMSO ; '90% D2O/10% D6-DMSO' 'Pu22:13C-DC34=1:2 D2O' solution ? 5 ;0.5 mM (2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine, 25 mM D11- TRIS, 50 mM potassium chloride, 90% D2O/10% D6-DMSO ; '90% D2O/10% D6-DMSO' 'DC34 free' solution ? 6 ;0.1 mM DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 0.05-0.6 mM (2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine, 25 mM D11- TRIS, 50 mM potassium chloride, 90% H2O/10% D6-DMSO ; '90% H2O/10% D6-DMSO' Titration solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 850 ? 2 AVANCE ? Bruker 800 ? 3 AVANCE ? Bruker 700 ? # _pdbx_nmr_refine.entry_id 5W77 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 7 # _pdbx_nmr_ensemble.entry_id 5W77 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5W77 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 3.5pl5 'Bruker Biospin' 2 processing NMRPipe 8.9 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'chemical shift assignment' XEASY ? 'Bartels et al.' 4 'peak picking' XEASY ? 'Bartels et al.' 5 'data analysis' XEASY ? 'Bartels et al.' 6 'data analysis' TALOS TALOS+ 'Cornilescu, Delaglio and Bax' 7 refinement 'X-PLOR NIH' 2.45 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5W77 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5W77 _struct.title 'Solution structure of the MYC G-quadruplex bound to small molecule DC-34' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5W77 _struct_keywords.text 'c-Myc promoter DNA-inhibitor complex, c-Myc promoter G-quadruplex, DNA, DNA-INHIBITOR complex' _struct_keywords.pdbx_keywords DNA/INHIBITOR # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 7 A K 101 1_555 ? ? ? ? ? ? ? 2.815 ? ? metalc2 metalc ? ? A DG 5 O6 ? ? ? 1_555 B K . K ? ? A DG 8 A K 101 1_555 ? ? ? ? ? ? ? 2.919 ? ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 8 A K 102 1_555 ? ? ? ? ? ? ? 2.917 ? ? metalc4 metalc ? ? A DG 6 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 102 1_555 ? ? ? ? ? ? ? 3.042 ? ? metalc5 metalc ? ? A DG 8 O6 ? ? ? 1_555 B K . K ? ? A DG 11 A K 101 1_555 ? ? ? ? ? ? ? 2.954 ? ? metalc6 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 12 A K 101 1_555 ? ? ? ? ? ? ? 2.896 ? ? metalc7 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 12 A K 102 1_555 ? ? ? ? ? ? ? 2.969 ? ? metalc8 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 13 A K 102 1_555 ? ? ? ? ? ? ? 3.069 ? ? metalc9 metalc ? ? A DG 13 O6 ? ? ? 1_555 B K . K ? ? A DG 16 A K 101 1_555 ? ? ? ? ? ? ? 2.938 ? ? metalc10 metalc ? ? A DG 14 O6 ? ? ? 1_555 B K . K ? ? A DG 17 A K 101 1_555 ? ? ? ? ? ? ? 2.895 ? ? metalc11 metalc ? ? A DG 14 O6 ? ? ? 1_555 C K . K ? ? A DG 17 A K 102 1_555 ? ? ? ? ? ? ? 3.040 ? ? metalc12 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 18 A K 102 1_555 ? ? ? ? ? ? ? 2.846 ? ? metalc13 metalc ? ? A DG 17 O6 ? ? ? 1_555 B K . K ? ? A DG 20 A K 101 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc14 metalc ? ? A DG 18 O6 ? ? ? 1_555 B K . K ? ? A DG 21 A K 101 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc15 metalc ? ? A DG 18 O6 ? ? ? 1_555 C K . K ? ? A DG 21 A K 102 1_555 ? ? ? ? ? ? ? 3.038 ? ? metalc16 metalc ? ? A DG 19 O6 ? ? ? 1_555 C K . K ? ? A DG 22 A K 102 1_555 ? ? ? ? ? ? ? 3.029 ? ? hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 7 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 7 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 8 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 8 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 9 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 9 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 11 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 11 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 17 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 17 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 18 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 18 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 9 'binding site for residue K A 101' AC2 Software A K 102 ? 9 'binding site for residue K A 102' AC3 Software A 9WP 103 ? 5 'binding site for residue 9WP A 103' AC4 Software A 9WP 104 ? 5 'binding site for residue 9WP A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 4 ? DG A 7 . ? 1_555 ? 2 AC1 9 DG A 5 ? DG A 8 . ? 1_555 ? 3 AC1 9 DG A 8 ? DG A 11 . ? 1_555 ? 4 AC1 9 DG A 9 ? DG A 12 . ? 1_555 ? 5 AC1 9 DG A 13 ? DG A 16 . ? 1_555 ? 6 AC1 9 DG A 14 ? DG A 17 . ? 1_555 ? 7 AC1 9 DG A 17 ? DG A 20 . ? 1_555 ? 8 AC1 9 DG A 18 ? DG A 21 . ? 1_555 ? 9 AC1 9 K C . ? K A 102 . ? 1_555 ? 10 AC2 9 DG A 5 ? DG A 8 . ? 1_555 ? 11 AC2 9 DG A 6 ? DG A 9 . ? 1_555 ? 12 AC2 9 DG A 9 ? DG A 12 . ? 1_555 ? 13 AC2 9 DG A 10 ? DG A 13 . ? 1_555 ? 14 AC2 9 DG A 14 ? DG A 17 . ? 1_555 ? 15 AC2 9 DG A 15 ? DG A 18 . ? 1_555 ? 16 AC2 9 DG A 18 ? DG A 21 . ? 1_555 ? 17 AC2 9 DG A 19 ? DG A 22 . ? 1_555 ? 18 AC2 9 K B . ? K A 101 . ? 1_555 ? 19 AC3 5 DA A 3 ? DA A 6 . ? 1_555 ? 20 AC3 5 DG A 4 ? DG A 7 . ? 1_555 ? 21 AC3 5 DG A 8 ? DG A 11 . ? 1_555 ? 22 AC3 5 DG A 13 ? DG A 16 . ? 1_555 ? 23 AC3 5 DG A 17 ? DG A 20 . ? 1_555 ? 24 AC4 5 DG A 6 ? DG A 9 . ? 1_555 ? 25 AC4 5 DG A 10 ? DG A 13 . ? 1_555 ? 26 AC4 5 DG A 15 ? DG A 18 . ? 1_555 ? 27 AC4 5 DT A 20 ? DT A 23 . ? 1_555 ? 28 AC4 5 DA A 22 ? DA A 25 . ? 1_555 ? # _atom_sites.entry_id 5W77 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 4 4 DT DT A . n A 1 2 DG 2 5 5 DG DG A . n A 1 3 DA 3 6 6 DA DA A . n A 1 4 DG 4 7 7 DG DG A . n A 1 5 DG 5 8 8 DG DG A . n A 1 6 DG 6 9 9 DG DG A . n A 1 7 DT 7 10 10 DT DT A . n A 1 8 DG 8 11 11 DG DG A . n A 1 9 DG 9 12 12 DG DG A . n A 1 10 DG 10 13 13 DG DG A . n A 1 11 DT 11 14 14 DT DT A . n A 1 12 DA 12 15 15 DA DA A . n A 1 13 DG 13 16 16 DG DG A . n A 1 14 DG 14 17 17 DG DG A . n A 1 15 DG 15 18 18 DG DG A . n A 1 16 DT 16 19 19 DT DT A . n A 1 17 DG 17 20 20 DG DG A . n A 1 18 DG 18 21 21 DG DG A . n A 1 19 DG 19 22 22 DG DG A . n A 1 20 DT 20 23 23 DT DT A . n A 1 21 DA 21 24 24 DA DA A . n A 1 22 DA 22 25 25 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 300 K K A . C 2 K 1 102 301 K K A . D 3 9WP 1 103 400 9WP DC3 A . E 3 9WP 1 104 401 9WP DC3 A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 440 ? 1 MORE -0 ? 1 'SSA (A^2)' 4420 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 5 ? A DG 8 ? 1_555 73.3 ? 2 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 8 ? A DG 11 ? 1_555 76.7 ? 3 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 8 ? A DG 11 ? 1_555 91.1 ? 4 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 133.9 ? 5 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 74.0 ? 6 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 72.3 ? 7 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 13 ? A DG 16 ? 1_555 116.4 ? 8 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 13 ? A DG 16 ? 1_555 155.9 ? 9 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 13 ? A DG 16 ? 1_555 71.3 ? 10 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 13 ? A DG 16 ? 1_555 84.7 ? 11 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 152.3 ? 12 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 107.9 ? 13 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 130.2 ? 14 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 69.8 ? 15 O6 ? A DG 13 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 74.1 ? 16 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 72.5 ? 17 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 128.0 ? 18 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 117.3 ? 19 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 152.9 ? 20 O6 ? A DG 13 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 75.8 ? 21 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 17 ? A DG 20 ? 1_555 86.7 ? 22 O6 ? A DG 4 ? A DG 7 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 91.5 ? 23 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 72.0 ? 24 O6 ? A DG 8 ? A DG 11 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 161.8 ? 25 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 108.2 ? 26 O6 ? A DG 13 ? A DG 16 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 126.9 ? 27 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 63.9 ? 28 O6 ? A DG 17 ? A DG 20 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 70.9 ? 29 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 6 ? A DG 9 ? 1_555 72.9 ? 30 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 73.0 ? 31 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 9 ? A DG 12 ? 1_555 99.8 ? 32 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 13 ? 1_555 130.9 ? 33 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 13 ? 1_555 76.8 ? 34 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 13 ? 1_555 75.3 ? 35 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 104.2 ? 36 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 166.5 ? 37 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 66.9 ? 38 O6 ? A DG 10 ? A DG 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 14 ? A DG 17 ? 1_555 96.4 ? 39 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 160.1 ? 40 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 112.2 ? 41 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 122.9 ? 42 O6 ? A DG 10 ? A DG 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 68.3 ? 43 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 15 ? A DG 18 ? 1_555 75.1 ? 44 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 70.9 ? 45 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 127.6 ? 46 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 104.3 ? 47 O6 ? A DG 10 ? A DG 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 154.3 ? 48 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 61.3 ? 49 O6 ? A DG 15 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 18 ? A DG 21 ? 1_555 92.1 ? 50 O6 ? A DG 5 ? A DG 8 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 84.5 ? 51 O6 ? A DG 6 ? A DG 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 68.5 ? 52 O6 ? A DG 9 ? A DG 12 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 157.1 ? 53 O6 ? A DG 10 ? A DG 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 118.6 ? 54 O6 ? A DG 14 ? A DG 17 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 124.8 ? 55 O6 ? A DG 15 ? A DG 18 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 80.0 ? 56 O6 ? A DG 18 ? A DG 21 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 19 ? A DG 22 ? 1_555 71.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-24 2 'Structure model' 1 1 2021-03-03 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Author supporting evidence' 5 3 'Structure model' 'Database references' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_nmr_software 2 2 'Structure model' pdbx_nmr_spectrometer 3 2 'Structure model' struct 4 2 'Structure model' struct_conn 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_audit_support 7 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_nmr_software.name' 2 2 'Structure model' '_pdbx_nmr_spectrometer.model' 3 2 'Structure model' '_struct.title' 4 2 'Structure model' '_struct_conn.pdbx_dist_value' 5 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 6 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 7 3 'Structure model' '_database_2.pdbx_DOI' 8 3 'Structure model' '_database_2.pdbx_database_accession' 9 3 'Structure model' '_pdbx_audit_support.funding_organization' 10 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') ; 0.3 ? mM 'natural abundance' 1 TRIS 25 ? mM D11- 1 'potassium chloride' 50 ? mM 'natural abundance' 2 ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') ; .125 ? mM 'natural abundance' 2 '(2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine' .25 ? mM 'natural abundance' 2 TRIS 25 ? mM D11- 2 'potassium chloride' 50 ? mM 'natural abundance' 3 ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') ; .25 ? mM 'natural abundance' 3 '(2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine' .50 ? mM 'natural abundance' 3 TRIS 25 ? mM D11- 3 'potassium chloride' 50 ? mM 'natural abundance' 4 ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') ; 0.25 ? mM 'natural abundance' 4 '(2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine' 0.5 ? mM 'selective 13C-labeling' 4 TRIS 25 ? mM 'natural abundance' 4 'potassium chloride' 50 ? mM 'natural abundance' 5 '(2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine' 0.5 ? mM 'natural abundance' 5 TRIS 25 ? mM D11- 5 'potassium chloride' 50 ? mM 'natural abundance' 6 ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') ; 0.1 ? mM 'natural abundance' 6 '(2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol-1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine' 0.05 0.05-0.6 mM 'natural abundance' 6 TRIS 25 ? mM D11- 6 'potassium chloride' 50 ? mM 'natural abundance' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5W77 'double helix' 5W77 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 4 1_555 A DG 17 1_555 -1.667 -3.688 0.073 -1.849 -0.660 91.236 1 A_DG7:DG20_A A 7 ? A 20 ? 6 3 1 A DG 14 1_555 A DG 18 1_555 1.289 3.761 -0.008 -0.854 -1.102 -94.138 2 A_DG17:DG21_A A 17 ? A 21 ? 6 3 1 A DG 15 1_555 A DG 10 1_555 -1.603 -3.672 0.227 -2.451 -1.219 93.280 3 A_DG18:DG13_A A 18 ? A 13 ? 6 3 1 A DG 19 1_555 A DG 6 1_555 1.774 3.566 -0.180 2.886 -0.387 -92.888 4 A_DG22:DG9_A A 22 ? A 9 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 4 1_555 A DG 17 1_555 A DG 14 1_555 A DG 18 1_555 0.793 2.115 3.183 -0.720 -0.023 -66.541 -1.927 0.695 3.191 0.021 -0.656 -66.544 1 AA_DG7DG17:DG21DG20_AA A 7 ? A 20 ? A 17 ? A 21 ? 1 A DG 14 1_555 A DG 18 1_555 A DG 15 1_555 A DG 10 1_555 1.409 1.932 3.327 5.168 -6.668 -58.794 -1.604 1.693 3.385 6.754 5.234 -59.343 2 AA_DG17DG18:DG13DG21_AA A 17 ? A 21 ? A 18 ? A 13 ? 1 A DG 15 1_555 A DG 10 1_555 A DG 19 1_555 A DG 6 1_555 2.255 3.449 -0.016 -1.798 -5.282 -178.266 -1.725 1.128 -0.013 2.641 -0.899 -178.268 3 AA_DG18DG22:DG9DG13_AA A 18 ? A 13 ? A 22 ? A 9 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'Intramural Research Program' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 '4-[(azepan-1-yl)methyl]-5-hydroxy-2-methyl-N-[4-(trifluoromethyl)phenyl]-1-benzofuran-3-carboxamide' 9WP # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #