data_5XG8 # _entry.id 5XG8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.288 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5XG8 WWPDB D_1300003463 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5XG7 _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XG8 _pdbx_database_status.recvd_initial_deposition_date 2017-04-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, Y.' 1 ? 'Su, J.Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 980 _citation.page_last 980 _citation.title ;Galectin-13, a different prototype galectin, does not bind beta-galacto-sides and forms dimers via intermolecular disulfide bridges between Cys-136 and Cys-138 ; _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-018-19465-0 _citation.pdbx_database_id_PubMed 29343868 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Su, J.' 1 primary 'Wang, Y.' 2 primary 'Si, Y.' 3 primary 'Gao, J.' 4 primary 'Song, C.' 5 primary 'Cui, L.' 6 primary 'Wu, R.' 7 primary 'Tai, G.' 8 primary 'Zhou, Y.' 9 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5XG8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.037 _cell.length_a_esd ? _cell.length_b 92.207 _cell.length_b_esd ? _cell.length_c 50.703 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Galactoside-binding soluble lectin 13' 15985.277 1 ? R53H 'UNP residues 2-139' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 124 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Galectin-13,Gal-13,Placental tissue protein 13,Placental protein 13' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFHFRVHFGNHVVMNRREFGIWMLEETTDYV PFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSVCVCN ; _entity_poly.pdbx_seq_one_letter_code_can ;SSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFHFRVHFGNHVVMNRREFGIWMLEETTDYV PFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSVCVCN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 LEU n 1 4 PRO n 1 5 VAL n 1 6 PRO n 1 7 TYR n 1 8 LYS n 1 9 LEU n 1 10 PRO n 1 11 VAL n 1 12 SER n 1 13 LEU n 1 14 SER n 1 15 VAL n 1 16 GLY n 1 17 SER n 1 18 CYS n 1 19 VAL n 1 20 ILE n 1 21 ILE n 1 22 LYS n 1 23 GLY n 1 24 THR n 1 25 PRO n 1 26 ILE n 1 27 HIS n 1 28 SER n 1 29 PHE n 1 30 ILE n 1 31 ASN n 1 32 ASP n 1 33 PRO n 1 34 GLN n 1 35 LEU n 1 36 GLN n 1 37 VAL n 1 38 ASP n 1 39 PHE n 1 40 TYR n 1 41 THR n 1 42 ASP n 1 43 MET n 1 44 ASP n 1 45 GLU n 1 46 ASP n 1 47 SER n 1 48 ASP n 1 49 ILE n 1 50 ALA n 1 51 PHE n 1 52 HIS n 1 53 PHE n 1 54 ARG n 1 55 VAL n 1 56 HIS n 1 57 PHE n 1 58 GLY n 1 59 ASN n 1 60 HIS n 1 61 VAL n 1 62 VAL n 1 63 MET n 1 64 ASN n 1 65 ARG n 1 66 ARG n 1 67 GLU n 1 68 PHE n 1 69 GLY n 1 70 ILE n 1 71 TRP n 1 72 MET n 1 73 LEU n 1 74 GLU n 1 75 GLU n 1 76 THR n 1 77 THR n 1 78 ASP n 1 79 TYR n 1 80 VAL n 1 81 PRO n 1 82 PHE n 1 83 GLU n 1 84 ASP n 1 85 GLY n 1 86 LYS n 1 87 GLN n 1 88 PHE n 1 89 GLU n 1 90 LEU n 1 91 CYS n 1 92 ILE n 1 93 TYR n 1 94 VAL n 1 95 HIS n 1 96 TYR n 1 97 ASN n 1 98 GLU n 1 99 TYR n 1 100 GLU n 1 101 ILE n 1 102 LYS n 1 103 VAL n 1 104 ASN n 1 105 GLY n 1 106 ILE n 1 107 ARG n 1 108 ILE n 1 109 TYR n 1 110 GLY n 1 111 PHE n 1 112 VAL n 1 113 HIS n 1 114 ARG n 1 115 ILE n 1 116 PRO n 1 117 PRO n 1 118 SER n 1 119 PHE n 1 120 VAL n 1 121 LYS n 1 122 MET n 1 123 VAL n 1 124 GLN n 1 125 VAL n 1 126 SER n 1 127 ARG n 1 128 ASP n 1 129 ILE n 1 130 SER n 1 131 LEU n 1 132 THR n 1 133 SER n 1 134 VAL n 1 135 CYS n 1 136 VAL n 1 137 CYS n 1 138 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 138 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LGALS13, PLAC8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PP13_HUMAN _struct_ref.pdbx_db_accession Q9UHV8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGNHVVMNRREFGIWMLEETTDYV PFEDGKQFELCIYVHYNEYEIKVNGIRIYGFVHRIPPSFVKMVQVSRDISLTSVCVCN ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5XG8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UHV8 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 139 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 139 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5XG8 _struct_ref_seq_dif.mon_id HIS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 52 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9UHV8 _struct_ref_seq_dif.db_mon_id ARG _struct_ref_seq_dif.pdbx_seq_db_seq_num 53 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 53 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XG8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details PEG _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-03-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5XG8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 19.092 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20107 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 95.820 _refine.B_iso_mean 30.9956 _refine.B_iso_min 17.120 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5XG8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5500 _refine.ls_d_res_low 19.0920 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20082 _refine.ls_number_reflns_R_free 1984 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7400 _refine.ls_percent_reflns_R_free 9.8800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1733 _refine.ls_R_factor_R_free 0.1946 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1710 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.4400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5500 _refine_hist.d_res_low 19.0920 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1275 _refine_hist.pdbx_number_residues_total 138 _refine_hist.pdbx_B_iso_mean_ligand 38.10 _refine_hist.pdbx_B_iso_mean_solvent 36.89 _refine_hist.pdbx_number_atoms_protein 1123 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # _struct.entry_id 5XG8 _struct.title 'Galectin-13/Placental Protein 13 variant R53H crystal structure' _struct.pdbx_descriptor 'Galactoside-binding soluble lectin 13' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XG8 _struct_keywords.text 'disulfide bond, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 28 ? ASP A 32 ? SER A 29 ASP A 33 5 ? 5 HELX_P HELX_P2 AA2 PRO A 116 ? VAL A 120 ? PRO A 117 VAL A 121 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 135 SG ? ? ? 1_555 A CYS 137 SG ? ? A CYS 136 A CYS 138 4_555 ? ? ? ? ? ? ? 2.054 ? disulf2 disulf ? ? A CYS 137 SG ? ? ? 1_555 A CYS 135 SG ? ? A CYS 138 A CYS 136 4_555 ? ? ? ? ? ? ? 2.054 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 5 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 6 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 6 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 7 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.72 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 7 ? PRO A 10 ? TYR A 8 PRO A 11 AA1 2 MET A 122 ? ARG A 127 ? MET A 123 ARG A 128 AA1 3 GLN A 34 ? TYR A 40 ? GLN A 35 TYR A 41 AA1 4 ILE A 49 ? HIS A 56 ? ILE A 50 HIS A 57 AA1 5 HIS A 60 ? GLU A 67 ? HIS A 61 GLU A 68 AA1 6 ILE A 70 ? TRP A 71 ? ILE A 71 TRP A 72 AA2 1 TYR A 7 ? PRO A 10 ? TYR A 8 PRO A 11 AA2 2 MET A 122 ? ARG A 127 ? MET A 123 ARG A 128 AA2 3 GLN A 34 ? TYR A 40 ? GLN A 35 TYR A 41 AA2 4 ILE A 49 ? HIS A 56 ? ILE A 50 HIS A 57 AA2 5 HIS A 60 ? GLU A 67 ? HIS A 61 GLU A 68 AA2 6 GLU A 75 ? THR A 77 ? GLU A 76 THR A 78 AA3 1 ILE A 106 ? VAL A 112 ? ILE A 107 VAL A 113 AA3 2 GLU A 98 ? VAL A 103 ? GLU A 99 VAL A 104 AA3 3 PHE A 88 ? VAL A 94 ? PHE A 89 VAL A 95 AA3 4 CYS A 18 ? PRO A 25 ? CYS A 19 PRO A 26 AA3 5 ILE A 129 ? CYS A 137 ? ILE A 130 CYS A 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 9 ? N LEU A 10 O VAL A 123 ? O VAL A 124 AA1 2 3 O SER A 126 ? O SER A 127 N GLN A 36 ? N GLN A 37 AA1 3 4 N LEU A 35 ? N LEU A 36 O VAL A 55 ? O VAL A 56 AA1 4 5 N HIS A 56 ? N HIS A 57 O HIS A 60 ? O HIS A 61 AA1 5 6 N GLU A 67 ? N GLU A 68 O ILE A 70 ? O ILE A 71 AA2 1 2 N LEU A 9 ? N LEU A 10 O VAL A 123 ? O VAL A 124 AA2 2 3 O SER A 126 ? O SER A 127 N GLN A 36 ? N GLN A 37 AA2 3 4 N LEU A 35 ? N LEU A 36 O VAL A 55 ? O VAL A 56 AA2 4 5 N HIS A 56 ? N HIS A 57 O HIS A 60 ? O HIS A 61 AA2 5 6 N MET A 63 ? N MET A 64 O GLU A 75 ? O GLU A 76 AA3 1 2 O ILE A 106 ? O ILE A 107 N VAL A 103 ? N VAL A 104 AA3 2 3 O LYS A 102 ? O LYS A 103 N CYS A 91 ? N CYS A 92 AA3 3 4 O LEU A 90 ? O LEU A 91 N ILE A 21 ? N ILE A 22 AA3 4 5 N THR A 24 ? N THR A 25 O SER A 130 ? O SER A 131 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'binding site for residue GOL A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASP A 32 ? ASP A 33 . ? 6_445 ? 2 AC1 8 HIS A 52 ? HIS A 53 . ? 1_555 ? 3 AC1 8 ARG A 54 ? ARG A 55 . ? 1_555 ? 4 AC1 8 VAL A 62 ? VAL A 63 . ? 1_555 ? 5 AC1 8 ASN A 64 ? ASN A 65 . ? 1_555 ? 6 AC1 8 TRP A 71 ? TRP A 72 . ? 1_555 ? 7 AC1 8 GLU A 74 ? GLU A 75 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 331 . ? 6_445 ? # _atom_sites.entry_id 5XG8 _atom_sites.fract_transf_matrix[1][1] 0.017230 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010845 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019723 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 SER 2 3 3 SER SER A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 PRO 4 5 5 PRO PRO A . n A 1 5 VAL 5 6 6 VAL VAL A . n A 1 6 PRO 6 7 7 PRO PRO A . n A 1 7 TYR 7 8 8 TYR TYR A . n A 1 8 LYS 8 9 9 LYS LYS A . n A 1 9 LEU 9 10 10 LEU LEU A . n A 1 10 PRO 10 11 11 PRO PRO A . n A 1 11 VAL 11 12 12 VAL VAL A . n A 1 12 SER 12 13 13 SER SER A . n A 1 13 LEU 13 14 14 LEU LEU A . n A 1 14 SER 14 15 15 SER SER A . n A 1 15 VAL 15 16 16 VAL VAL A . n A 1 16 GLY 16 17 17 GLY GLY A . n A 1 17 SER 17 18 18 SER SER A . n A 1 18 CYS 18 19 19 CYS CYS A . n A 1 19 VAL 19 20 20 VAL VAL A . n A 1 20 ILE 20 21 21 ILE ILE A . n A 1 21 ILE 21 22 22 ILE ILE A . n A 1 22 LYS 22 23 23 LYS LYS A . n A 1 23 GLY 23 24 24 GLY GLY A . n A 1 24 THR 24 25 25 THR THR A . n A 1 25 PRO 25 26 26 PRO PRO A . n A 1 26 ILE 26 27 27 ILE ILE A . n A 1 27 HIS 27 28 28 HIS HIS A . n A 1 28 SER 28 29 29 SER SER A . n A 1 29 PHE 29 30 30 PHE PHE A . n A 1 30 ILE 30 31 31 ILE ILE A . n A 1 31 ASN 31 32 32 ASN ASN A . n A 1 32 ASP 32 33 33 ASP ASP A . n A 1 33 PRO 33 34 34 PRO PRO A . n A 1 34 GLN 34 35 35 GLN GLN A . n A 1 35 LEU 35 36 36 LEU LEU A . n A 1 36 GLN 36 37 37 GLN GLN A . n A 1 37 VAL 37 38 38 VAL VAL A . n A 1 38 ASP 38 39 39 ASP ASP A . n A 1 39 PHE 39 40 40 PHE PHE A . n A 1 40 TYR 40 41 41 TYR TYR A . n A 1 41 THR 41 42 42 THR THR A . n A 1 42 ASP 42 43 43 ASP ASP A . n A 1 43 MET 43 44 44 MET MET A . n A 1 44 ASP 44 45 45 ASP ASP A . n A 1 45 GLU 45 46 46 GLU GLU A . n A 1 46 ASP 46 47 47 ASP ASP A . n A 1 47 SER 47 48 48 SER SER A . n A 1 48 ASP 48 49 49 ASP ASP A . n A 1 49 ILE 49 50 50 ILE ILE A . n A 1 50 ALA 50 51 51 ALA ALA A . n A 1 51 PHE 51 52 52 PHE PHE A . n A 1 52 HIS 52 53 53 HIS HIS A . n A 1 53 PHE 53 54 54 PHE PHE A . n A 1 54 ARG 54 55 55 ARG ARG A . n A 1 55 VAL 55 56 56 VAL VAL A . n A 1 56 HIS 56 57 57 HIS HIS A . n A 1 57 PHE 57 58 58 PHE PHE A . n A 1 58 GLY 58 59 59 GLY GLY A . n A 1 59 ASN 59 60 60 ASN ASN A . n A 1 60 HIS 60 61 61 HIS HIS A . n A 1 61 VAL 61 62 62 VAL VAL A . n A 1 62 VAL 62 63 63 VAL VAL A . n A 1 63 MET 63 64 64 MET MET A . n A 1 64 ASN 64 65 65 ASN ASN A . n A 1 65 ARG 65 66 66 ARG ARG A . n A 1 66 ARG 66 67 67 ARG ARG A . n A 1 67 GLU 67 68 68 GLU GLU A . n A 1 68 PHE 68 69 69 PHE PHE A . n A 1 69 GLY 69 70 70 GLY GLY A . n A 1 70 ILE 70 71 71 ILE ILE A . n A 1 71 TRP 71 72 72 TRP TRP A . n A 1 72 MET 72 73 73 MET MET A . n A 1 73 LEU 73 74 74 LEU LEU A . n A 1 74 GLU 74 75 75 GLU GLU A . n A 1 75 GLU 75 76 76 GLU GLU A . n A 1 76 THR 76 77 77 THR THR A . n A 1 77 THR 77 78 78 THR THR A . n A 1 78 ASP 78 79 79 ASP ASP A . n A 1 79 TYR 79 80 80 TYR TYR A . n A 1 80 VAL 80 81 81 VAL VAL A . n A 1 81 PRO 81 82 82 PRO PRO A . n A 1 82 PHE 82 83 83 PHE PHE A . n A 1 83 GLU 83 84 84 GLU GLU A . n A 1 84 ASP 84 85 85 ASP ASP A . n A 1 85 GLY 85 86 86 GLY GLY A . n A 1 86 LYS 86 87 87 LYS LYS A . n A 1 87 GLN 87 88 88 GLN GLN A . n A 1 88 PHE 88 89 89 PHE PHE A . n A 1 89 GLU 89 90 90 GLU GLU A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 CYS 91 92 92 CYS CYS A . n A 1 92 ILE 92 93 93 ILE ILE A . n A 1 93 TYR 93 94 94 TYR TYR A . n A 1 94 VAL 94 95 95 VAL VAL A . n A 1 95 HIS 95 96 96 HIS HIS A . n A 1 96 TYR 96 97 97 TYR TYR A . n A 1 97 ASN 97 98 98 ASN ASN A . n A 1 98 GLU 98 99 99 GLU GLU A . n A 1 99 TYR 99 100 100 TYR TYR A . n A 1 100 GLU 100 101 101 GLU GLU A . n A 1 101 ILE 101 102 102 ILE ILE A . n A 1 102 LYS 102 103 103 LYS LYS A . n A 1 103 VAL 103 104 104 VAL VAL A . n A 1 104 ASN 104 105 105 ASN ASN A . n A 1 105 GLY 105 106 106 GLY GLY A . n A 1 106 ILE 106 107 107 ILE ILE A . n A 1 107 ARG 107 108 108 ARG ARG A . n A 1 108 ILE 108 109 109 ILE ILE A . n A 1 109 TYR 109 110 110 TYR TYR A . n A 1 110 GLY 110 111 111 GLY GLY A . n A 1 111 PHE 111 112 112 PHE PHE A . n A 1 112 VAL 112 113 113 VAL VAL A . n A 1 113 HIS 113 114 114 HIS HIS A . n A 1 114 ARG 114 115 115 ARG ARG A . n A 1 115 ILE 115 116 116 ILE ILE A . n A 1 116 PRO 116 117 117 PRO PRO A . n A 1 117 PRO 117 118 118 PRO PRO A . n A 1 118 SER 118 119 119 SER SER A . n A 1 119 PHE 119 120 120 PHE PHE A . n A 1 120 VAL 120 121 121 VAL VAL A . n A 1 121 LYS 121 122 122 LYS LYS A . n A 1 122 MET 122 123 123 MET MET A . n A 1 123 VAL 123 124 124 VAL VAL A . n A 1 124 GLN 124 125 125 GLN GLN A . n A 1 125 VAL 125 126 126 VAL VAL A . n A 1 126 SER 126 127 127 SER SER A . n A 1 127 ARG 127 128 128 ARG ARG A . n A 1 128 ASP 128 129 129 ASP ASP A . n A 1 129 ILE 129 130 130 ILE ILE A . n A 1 130 SER 130 131 131 SER SER A . n A 1 131 LEU 131 132 132 LEU LEU A . n A 1 132 THR 132 133 133 THR THR A . n A 1 133 SER 133 134 134 SER SER A . n A 1 134 VAL 134 135 135 VAL VAL A . n A 1 135 CYS 135 136 136 CYS CYS A . n A 1 136 VAL 136 137 137 VAL VAL A . n A 1 137 CYS 137 138 138 CYS CYS A . n A 1 138 ASN 138 139 139 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 201 1 GOL B4H A . C 3 HOH 1 301 79 HOH HOH A . C 3 HOH 2 302 89 HOH HOH A . C 3 HOH 3 303 99 HOH HOH A . C 3 HOH 4 304 53 HOH HOH A . C 3 HOH 5 305 117 HOH HOH A . C 3 HOH 6 306 48 HOH HOH A . C 3 HOH 7 307 59 HOH HOH A . C 3 HOH 8 308 63 HOH HOH A . C 3 HOH 9 309 37 HOH HOH A . C 3 HOH 10 310 62 HOH HOH A . C 3 HOH 11 311 77 HOH HOH A . C 3 HOH 12 312 56 HOH HOH A . C 3 HOH 13 313 103 HOH HOH A . C 3 HOH 14 314 35 HOH HOH A . C 3 HOH 15 315 73 HOH HOH A . C 3 HOH 16 316 123 HOH HOH A . C 3 HOH 17 317 82 HOH HOH A . C 3 HOH 18 318 112 HOH HOH A . C 3 HOH 19 319 31 HOH HOH A . C 3 HOH 20 320 26 HOH HOH A . C 3 HOH 21 321 2 HOH HOH A . C 3 HOH 22 322 1 HOH HOH A . C 3 HOH 23 323 33 HOH HOH A . C 3 HOH 24 324 17 HOH HOH A . C 3 HOH 25 325 87 HOH HOH A . C 3 HOH 26 326 61 HOH HOH A . C 3 HOH 27 327 12 HOH HOH A . C 3 HOH 28 328 70 HOH HOH A . C 3 HOH 29 329 15 HOH HOH A . C 3 HOH 30 330 86 HOH HOH A . C 3 HOH 31 331 21 HOH HOH A . C 3 HOH 32 332 122 HOH HOH A . C 3 HOH 33 333 22 HOH HOH A . C 3 HOH 34 334 3 HOH HOH A . C 3 HOH 35 335 68 HOH HOH A . C 3 HOH 36 336 51 HOH HOH A . C 3 HOH 37 337 40 HOH HOH A . C 3 HOH 38 338 39 HOH HOH A . C 3 HOH 39 339 24 HOH HOH A . C 3 HOH 40 340 119 HOH HOH A . C 3 HOH 41 341 94 HOH HOH A . C 3 HOH 42 342 54 HOH HOH A . C 3 HOH 43 343 32 HOH HOH A . C 3 HOH 44 344 76 HOH HOH A . C 3 HOH 45 345 9 HOH HOH A . C 3 HOH 46 346 7 HOH HOH A . C 3 HOH 47 347 101 HOH HOH A . C 3 HOH 48 348 116 HOH HOH A . C 3 HOH 49 349 20 HOH HOH A . C 3 HOH 50 350 18 HOH HOH A . C 3 HOH 51 351 19 HOH HOH A . C 3 HOH 52 352 6 HOH HOH A . C 3 HOH 53 353 111 HOH HOH A . C 3 HOH 54 354 95 HOH HOH A . C 3 HOH 55 355 121 HOH HOH A . C 3 HOH 56 356 11 HOH HOH A . C 3 HOH 57 357 96 HOH HOH A . C 3 HOH 58 358 58 HOH HOH A . C 3 HOH 59 359 98 HOH HOH A . C 3 HOH 60 360 5 HOH HOH A . C 3 HOH 61 361 74 HOH HOH A . C 3 HOH 62 362 41 HOH HOH A . C 3 HOH 63 363 36 HOH HOH A . C 3 HOH 64 364 65 HOH HOH A . C 3 HOH 65 365 47 HOH HOH A . C 3 HOH 66 366 46 HOH HOH A . C 3 HOH 67 367 43 HOH HOH A . C 3 HOH 68 368 29 HOH HOH A . C 3 HOH 69 369 8 HOH HOH A . C 3 HOH 70 370 14 HOH HOH A . C 3 HOH 71 371 106 HOH HOH A . C 3 HOH 72 372 72 HOH HOH A . C 3 HOH 73 373 64 HOH HOH A . C 3 HOH 74 374 45 HOH HOH A . C 3 HOH 75 375 69 HOH HOH A . C 3 HOH 76 376 34 HOH HOH A . C 3 HOH 77 377 16 HOH HOH A . C 3 HOH 78 378 23 HOH HOH A . C 3 HOH 79 379 114 HOH HOH A . C 3 HOH 80 380 88 HOH HOH A . C 3 HOH 81 381 120 HOH HOH A . C 3 HOH 82 382 27 HOH HOH A . C 3 HOH 83 383 10 HOH HOH A . C 3 HOH 84 384 42 HOH HOH A . C 3 HOH 85 385 38 HOH HOH A . C 3 HOH 86 386 93 HOH HOH A . C 3 HOH 87 387 30 HOH HOH A . C 3 HOH 88 388 102 HOH HOH A . C 3 HOH 89 389 110 HOH HOH A . C 3 HOH 90 390 25 HOH HOH A . C 3 HOH 91 391 4 HOH HOH A . C 3 HOH 92 392 105 HOH HOH A . C 3 HOH 93 393 28 HOH HOH A . C 3 HOH 94 394 55 HOH HOH A . C 3 HOH 95 395 81 HOH HOH A . C 3 HOH 96 396 44 HOH HOH A . C 3 HOH 97 397 92 HOH HOH A . C 3 HOH 98 398 60 HOH HOH A . C 3 HOH 99 399 52 HOH HOH A . C 3 HOH 100 400 78 HOH HOH A . C 3 HOH 101 401 113 HOH HOH A . C 3 HOH 102 402 50 HOH HOH A . C 3 HOH 103 403 124 HOH HOH A . C 3 HOH 104 404 13 HOH HOH A . C 3 HOH 105 405 75 HOH HOH A . C 3 HOH 106 406 115 HOH HOH A . C 3 HOH 107 407 67 HOH HOH A . C 3 HOH 108 408 118 HOH HOH A . C 3 HOH 109 409 57 HOH HOH A . C 3 HOH 110 410 66 HOH HOH A . C 3 HOH 111 411 85 HOH HOH A . C 3 HOH 112 412 49 HOH HOH A . C 3 HOH 113 413 104 HOH HOH A . C 3 HOH 114 414 71 HOH HOH A . C 3 HOH 115 415 90 HOH HOH A . C 3 HOH 116 416 83 HOH HOH A . C 3 HOH 117 417 80 HOH HOH A . C 3 HOH 118 418 100 HOH HOH A . C 3 HOH 119 419 97 HOH HOH A . C 3 HOH 120 420 84 HOH HOH A . C 3 HOH 121 421 108 HOH HOH A . C 3 HOH 122 422 91 HOH HOH A . C 3 HOH 123 423 109 HOH HOH A . C 3 HOH 124 424 107 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1310 ? 1 MORE -10 ? 1 'SSA (A^2)' 12570 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 359 ? C HOH . 2 1 A HOH 409 ? C HOH . 3 1 A HOH 424 ? C HOH . # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2018-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '1.10.1_2155: ???' 2 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 388 ? ? 1_555 O A HOH 405 ? ? 6_445 1.97 2 1 O A HOH 305 ? ? 1_555 O A HOH 305 ? ? 6_445 2.00 3 1 O A HOH 419 ? ? 1_555 O A HOH 419 ? ? 3_456 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 52 ? ? -161.11 116.69 2 1 ASN A 60 ? ? -137.89 -76.60 3 1 MET A 73 ? ? -94.45 -155.07 4 1 PRO A 82 ? ? -78.33 49.02 5 1 ARG A 128 ? ? 86.64 -140.13 6 1 ASP A 129 ? ? -93.95 54.65 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id VAL _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 62 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CG2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id VAL _pdbx_unobs_or_zero_occ_atoms.label_seq_id 61 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CG2 # _pdbx_audit_support.funding_organization 'the National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31500637 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #