data_5XHE # _entry.id 5XHE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5XHE WWPDB D_1300003540 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5XHK _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XHE _pdbx_database_status.recvd_initial_deposition_date 2017-04-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Padmanabhan, B.' 1 ? 'Mathur, S.' 2 ? 'Tripathi, S.K.' 3 ? 'Deshmukh, P.' 4 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary 'J. Biomol. Struct. Dyn.' JBSDD6 0646 1538-0254 ? ? 36 ? 2342 2360 'Insights into the crystal structure of BRD2-BD2 - phenanthridinone complex and theoretical studies on phenanthridinone analogs.' 2018 ? 10.1080/07391102.2017.1353441 28696179 ? ? ? ? ? ? ? ? US ? ? 1 'PLoS ONE' ? ? 1932-6203 ? ? 11 ? e0156344 ? 'A Novel Phenanthridionone Based Scaffold As a Potential Inhibitor of the BRD2 Bromodomain: Crystal Structure of the Complex.' 2016 ? 10.1371/journal.pone.0156344 27243809 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mathur, S.' 1 ? primary 'Deshmukh, P.' 2 ? primary 'Tripathi, S.' 3 ? primary 'Marimuthu, P.' 4 ? primary 'Padmanabhan, B.' 5 ? 1 'Tripathi, S.' 6 ? 1 'Mathur, S.' 7 ? 1 'Deshmukh, P.' 8 ? 1 'Manjula, R.' 9 ? 1 'Padmanabhan, B.' 10 ? # _cell.entry_id 5XHE _cell.length_a 32.190 _cell.length_b 52.450 _cell.length_c 71.870 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XHE _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 2' 13456.462 1 ? ? 'Bromodomain (UNP RESIDUES 348-455)' ? 2 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 149 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'O27.1.1,Really interesting new gene 3 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;HMQDPEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMF SN(CME)YKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_seq_one_letter_code_can ;HMQDPEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMF SNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 MET n 1 3 GLN n 1 4 ASP n 1 5 PRO n 1 6 GLU n 1 7 GLN n 1 8 LEU n 1 9 LYS n 1 10 HIS n 1 11 CYS n 1 12 ASN n 1 13 GLY n 1 14 ILE n 1 15 LEU n 1 16 LYS n 1 17 GLU n 1 18 LEU n 1 19 LEU n 1 20 SER n 1 21 LYS n 1 22 LYS n 1 23 HIS n 1 24 ALA n 1 25 ALA n 1 26 TYR n 1 27 ALA n 1 28 TRP n 1 29 PRO n 1 30 PHE n 1 31 TYR n 1 32 LYS n 1 33 PRO n 1 34 VAL n 1 35 ASP n 1 36 ALA n 1 37 SER n 1 38 ALA n 1 39 LEU n 1 40 GLY n 1 41 LEU n 1 42 HIS n 1 43 ASP n 1 44 TYR n 1 45 HIS n 1 46 ASP n 1 47 ILE n 1 48 ILE n 1 49 LYS n 1 50 HIS n 1 51 PRO n 1 52 MET n 1 53 ASP n 1 54 LEU n 1 55 SER n 1 56 THR n 1 57 VAL n 1 58 LYS n 1 59 ARG n 1 60 LYS n 1 61 MET n 1 62 GLU n 1 63 ASN n 1 64 ARG n 1 65 ASP n 1 66 TYR n 1 67 ARG n 1 68 ASP n 1 69 ALA n 1 70 GLN n 1 71 GLU n 1 72 PHE n 1 73 ALA n 1 74 ALA n 1 75 ASP n 1 76 VAL n 1 77 ARG n 1 78 LEU n 1 79 MET n 1 80 PHE n 1 81 SER n 1 82 ASN n 1 83 CME n 1 84 TYR n 1 85 LYS n 1 86 TYR n 1 87 ASN n 1 88 PRO n 1 89 PRO n 1 90 ASP n 1 91 HIS n 1 92 ASP n 1 93 VAL n 1 94 VAL n 1 95 ALA n 1 96 MET n 1 97 ALA n 1 98 ARG n 1 99 LYS n 1 100 LEU n 1 101 GLN n 1 102 ASP n 1 103 VAL n 1 104 PHE n 1 105 GLU n 1 106 PHE n 1 107 ARG n 1 108 TYR n 1 109 ALA n 1 110 LYS n 1 111 MET n 1 112 PRO n 1 113 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 113 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD2, KIAA9001, RING3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD2_HUMAN _struct_ref.pdbx_db_accession P25440 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYK YNPPDHDVVAMARKLQDVFEFRYAKMPD ; _struct_ref.pdbx_align_begin 348 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5XHE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25440 _struct_ref_seq.db_align_beg 348 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 455 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 348 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5XHE HIS A 1 ? UNP P25440 ? ? 'expression tag' 343 1 1 5XHE MET A 2 ? UNP P25440 ? ? 'expression tag' 344 2 1 5XHE GLN A 3 ? UNP P25440 ? ? 'expression tag' 345 3 1 5XHE ASP A 4 ? UNP P25440 ? ? 'expression tag' 346 4 1 5XHE PRO A 5 ? UNP P25440 ? ? 'expression tag' 347 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CME 'L-peptide linking' n 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' ? 'C5 H11 N O3 S2' 197.276 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XHE _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '22% PEG 2000, 5mM b-ME, 10% Glycerol, 50mM Tris-Cl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-07-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'SI (III)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.90 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'RRCAT INDUS-2 BEAMLINE PX-BL21' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.90 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline PX-BL21 _diffrn_source.pdbx_synchrotron_site 'RRCAT INDUS-2' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5XHE _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.400 _reflns.d_resolution_low 42.367 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24042 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.000 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 6.900 _reflns.pdbx_netI_over_sigmaI 12.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.086 _reflns.pdbx_Rpim_I_all 0.035 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.480 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 97.000 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.583 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.639 _reflns_shell.pdbx_Rpim_I_all 0.256 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5XHE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22848 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 97.87 _refine.ls_R_factor_obs 0.14501 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14366 _refine.ls_R_factor_R_free 0.17155 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1173 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.B_iso_mean 16.333 _refine.aniso_B[1][1] 0.21 _refine.aniso_B[2][2] -0.18 _refine.aniso_B[3][3] -0.03 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.068 _refine.pdbx_overall_ESU_R_Free 0.058 _refine.overall_SU_ML 0.033 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.860 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 942 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 1122 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.019 ? 1131 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.268 1.967 ? 1536 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.411 5.000 ? 142 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.765 23.500 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.297 15.000 ? 198 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.036 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.083 0.200 ? 152 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 898 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.672 3.000 ? 1129 'X-RAY DIFFRACTION' ? r_sphericity_free 30.572 5.000 ? 47 'X-RAY DIFFRACTION' ? r_sphericity_bonded 11.081 5.000 ? 1208 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.403 _refine_ls_shell.d_res_low 1.439 _refine_ls_shell.number_reflns_R_work 1609 _refine_ls_shell.R_factor_R_work 0.230 _refine_ls_shell.percent_reflns_obs 96.32 _refine_ls_shell.R_factor_R_free 0.301 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 93 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5XHE _struct.title 'Crystal structure analysis of the second bromodomain of BRD2 covalently linked to b-mercaptoethanol' _struct.pdbx_descriptor 'Bromodomain-containing protein 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XHE _struct_keywords.text 'BET family, BRD2, bromodomain, b-mercaptoethanol, CME, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 3 ? LEU A 19 ? GLN A 345 LEU A 361 1 ? 17 HELX_P HELX_P2 AA2 SER A 20 ? LYS A 22 ? SER A 362 LYS A 364 5 ? 3 HELX_P HELX_P3 AA3 HIS A 23 ? TRP A 28 ? HIS A 365 TRP A 370 1 ? 6 HELX_P HELX_P4 AA4 PRO A 29 ? TYR A 31 ? PRO A 371 TYR A 373 5 ? 3 HELX_P HELX_P5 AA5 ASP A 35 ? GLY A 40 ? ASP A 377 GLY A 382 1 ? 6 HELX_P HELX_P6 AA6 ASP A 43 ? ILE A 48 ? ASP A 385 ILE A 390 1 ? 6 HELX_P HELX_P7 AA7 ASP A 53 ? ASN A 63 ? ASP A 395 ASN A 405 1 ? 11 HELX_P HELX_P8 AA8 ASP A 68 ? ASN A 87 ? ASP A 410 ASN A 429 1 ? 20 HELX_P HELX_P9 AA9 HIS A 91 ? ALA A 109 ? HIS A 433 ALA A 451 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ASN 82 C ? ? ? 1_555 A CME 83 N ? ? A ASN 424 A CME 425 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale both ? A CME 83 C ? ? ? 1_555 A TYR 84 N ? ? A CME 425 A TYR 426 1_555 ? ? ? ? ? ? ? 1.346 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PGE 501 ? 5 'binding site for residue PGE A 501' AC2 Software A GOL 502 ? 8 'binding site for residue GOL A 502' AC3 Software A GOL 503 ? 6 'binding site for residue GOL A 503' AC4 Software A GOL 504 ? 5 'binding site for residue GOL A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 TRP A 28 ? TRP A 370 . ? 1_555 ? 2 AC1 5 VAL A 93 ? VAL A 435 . ? 1_555 ? 3 AC1 5 MET A 96 ? MET A 438 . ? 1_555 ? 4 AC1 5 GOL E . ? GOL A 504 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 607 . ? 1_555 ? 6 AC2 8 TYR A 84 ? TYR A 426 . ? 1_555 ? 7 AC2 8 ARG A 98 ? ARG A 440 . ? 1_555 ? 8 AC2 8 GLN A 101 ? GLN A 443 . ? 1_555 ? 9 AC2 8 GLN A 101 ? GLN A 443 . ? 2_557 ? 10 AC2 8 ASP A 102 ? ASP A 444 . ? 1_555 ? 11 AC2 8 ASP A 102 ? ASP A 444 . ? 2_557 ? 12 AC2 8 GLU A 105 ? GLU A 447 . ? 2_557 ? 13 AC2 8 PHE A 106 ? PHE A 448 . ? 2_557 ? 14 AC3 6 LYS A 60 ? LYS A 402 . ? 1_555 ? 15 AC3 6 ASP A 65 ? ASP A 407 . ? 1_555 ? 16 AC3 6 MET A 96 ? MET A 438 . ? 1_455 ? 17 AC3 6 LYS A 99 ? LYS A 441 . ? 1_455 ? 18 AC3 6 HOH F . ? HOH A 604 . ? 1_555 ? 19 AC3 6 HOH F . ? HOH A 611 . ? 1_555 ? 20 AC4 5 LEU A 41 ? LEU A 383 . ? 1_555 ? 21 AC4 5 CME A 83 ? CME A 425 . ? 1_555 ? 22 AC4 5 ASN A 87 ? ASN A 429 . ? 1_555 ? 23 AC4 5 PGE B . ? PGE A 501 . ? 1_555 ? 24 AC4 5 HOH F . ? HOH A 603 . ? 1_555 ? # _atom_sites.entry_id 5XHE _atom_sites.fract_transf_matrix[1][1] 0.031066 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019066 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013914 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 343 343 HIS HIS A . n A 1 2 MET 2 344 344 MET MET A . n A 1 3 GLN 3 345 345 GLN GLN A . n A 1 4 ASP 4 346 346 ASP ASP A . n A 1 5 PRO 5 347 347 PRO PRO A . n A 1 6 GLU 6 348 348 GLU GLU A . n A 1 7 GLN 7 349 349 GLN GLN A . n A 1 8 LEU 8 350 350 LEU LEU A . n A 1 9 LYS 9 351 351 LYS LYS A . n A 1 10 HIS 10 352 352 HIS HIS A . n A 1 11 CYS 11 353 353 CYS CYS A . n A 1 12 ASN 12 354 354 ASN ASN A . n A 1 13 GLY 13 355 355 GLY GLY A . n A 1 14 ILE 14 356 356 ILE ILE A . n A 1 15 LEU 15 357 357 LEU LEU A . n A 1 16 LYS 16 358 358 LYS LYS A . n A 1 17 GLU 17 359 359 GLU GLU A . n A 1 18 LEU 18 360 360 LEU LEU A . n A 1 19 LEU 19 361 361 LEU LEU A . n A 1 20 SER 20 362 362 SER SER A . n A 1 21 LYS 21 363 363 LYS LYS A . n A 1 22 LYS 22 364 364 LYS LYS A . n A 1 23 HIS 23 365 365 HIS HIS A . n A 1 24 ALA 24 366 366 ALA ALA A . n A 1 25 ALA 25 367 367 ALA ALA A . n A 1 26 TYR 26 368 368 TYR TYR A . n A 1 27 ALA 27 369 369 ALA ALA A . n A 1 28 TRP 28 370 370 TRP TRP A . n A 1 29 PRO 29 371 371 PRO PRO A . n A 1 30 PHE 30 372 372 PHE PHE A . n A 1 31 TYR 31 373 373 TYR TYR A . n A 1 32 LYS 32 374 374 LYS LYS A . n A 1 33 PRO 33 375 375 PRO PRO A . n A 1 34 VAL 34 376 376 VAL VAL A . n A 1 35 ASP 35 377 377 ASP ASP A . n A 1 36 ALA 36 378 378 ALA ALA A . n A 1 37 SER 37 379 379 SER SER A . n A 1 38 ALA 38 380 380 ALA ALA A . n A 1 39 LEU 39 381 381 LEU LEU A . n A 1 40 GLY 40 382 382 GLY GLY A . n A 1 41 LEU 41 383 383 LEU LEU A . n A 1 42 HIS 42 384 384 HIS HIS A . n A 1 43 ASP 43 385 385 ASP ASP A . n A 1 44 TYR 44 386 386 TYR TYR A . n A 1 45 HIS 45 387 387 HIS HIS A . n A 1 46 ASP 46 388 388 ASP ASP A . n A 1 47 ILE 47 389 389 ILE ILE A . n A 1 48 ILE 48 390 390 ILE ILE A . n A 1 49 LYS 49 391 391 LYS LYS A . n A 1 50 HIS 50 392 392 HIS HIS A . n A 1 51 PRO 51 393 393 PRO PRO A . n A 1 52 MET 52 394 394 MET MET A . n A 1 53 ASP 53 395 395 ASP ASP A . n A 1 54 LEU 54 396 396 LEU LEU A . n A 1 55 SER 55 397 397 SER SER A . n A 1 56 THR 56 398 398 THR THR A . n A 1 57 VAL 57 399 399 VAL VAL A . n A 1 58 LYS 58 400 400 LYS LYS A . n A 1 59 ARG 59 401 401 ARG ARG A . n A 1 60 LYS 60 402 402 LYS LYS A . n A 1 61 MET 61 403 403 MET MET A . n A 1 62 GLU 62 404 404 GLU GLU A . n A 1 63 ASN 63 405 405 ASN ASN A . n A 1 64 ARG 64 406 406 ARG ARG A . n A 1 65 ASP 65 407 407 ASP ASP A . n A 1 66 TYR 66 408 408 TYR TYR A . n A 1 67 ARG 67 409 409 ARG ARG A . n A 1 68 ASP 68 410 410 ASP ASP A . n A 1 69 ALA 69 411 411 ALA ALA A . n A 1 70 GLN 70 412 412 GLN GLN A . n A 1 71 GLU 71 413 413 GLU GLU A . n A 1 72 PHE 72 414 414 PHE PHE A . n A 1 73 ALA 73 415 415 ALA ALA A . n A 1 74 ALA 74 416 416 ALA ALA A . n A 1 75 ASP 75 417 417 ASP ASP A . n A 1 76 VAL 76 418 418 VAL VAL A . n A 1 77 ARG 77 419 419 ARG ARG A . n A 1 78 LEU 78 420 420 LEU LEU A . n A 1 79 MET 79 421 421 MET MET A . n A 1 80 PHE 80 422 422 PHE PHE A . n A 1 81 SER 81 423 423 SER SER A . n A 1 82 ASN 82 424 424 ASN ASN A . n A 1 83 CME 83 425 425 CME CME A . n A 1 84 TYR 84 426 426 TYR TYR A . n A 1 85 LYS 85 427 427 LYS LYS A . n A 1 86 TYR 86 428 428 TYR TYR A . n A 1 87 ASN 87 429 429 ASN ASN A . n A 1 88 PRO 88 430 430 PRO PRO A . n A 1 89 PRO 89 431 431 PRO PRO A . n A 1 90 ASP 90 432 432 ASP ASP A . n A 1 91 HIS 91 433 433 HIS HIS A . n A 1 92 ASP 92 434 434 ASP ASP A . n A 1 93 VAL 93 435 435 VAL VAL A . n A 1 94 VAL 94 436 436 VAL VAL A . n A 1 95 ALA 95 437 437 ALA ALA A . n A 1 96 MET 96 438 438 MET MET A . n A 1 97 ALA 97 439 439 ALA ALA A . n A 1 98 ARG 98 440 440 ARG ARG A . n A 1 99 LYS 99 441 441 LYS LYS A . n A 1 100 LEU 100 442 442 LEU LEU A . n A 1 101 GLN 101 443 443 GLN GLN A . n A 1 102 ASP 102 444 444 ASP ASP A . n A 1 103 VAL 103 445 445 VAL VAL A . n A 1 104 PHE 104 446 446 PHE PHE A . n A 1 105 GLU 105 447 447 GLU GLU A . n A 1 106 PHE 106 448 448 PHE PHE A . n A 1 107 ARG 107 449 449 ARG ARG A . n A 1 108 TYR 108 450 450 TYR TYR A . n A 1 109 ALA 109 451 451 ALA ALA A . n A 1 110 LYS 110 452 452 LYS LYS A . n A 1 111 MET 111 453 453 MET MET A . n A 1 112 PRO 112 454 454 PRO PRO A . n A 1 113 ASP 113 455 455 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE 1 501 1 PGE PGE A . C 3 GOL 1 502 1 GOL GOL A . D 3 GOL 1 503 2 GOL GOL A . E 3 GOL 1 504 7 GOL GOL A . F 4 HOH 1 601 88 HOH HOH A . F 4 HOH 2 602 45 HOH HOH A . F 4 HOH 3 603 7 HOH HOH A . F 4 HOH 4 604 16 HOH HOH A . F 4 HOH 5 605 101 HOH HOH A . F 4 HOH 6 606 89 HOH HOH A . F 4 HOH 7 607 115 HOH HOH A . F 4 HOH 8 608 152 HOH HOH A . F 4 HOH 9 609 19 HOH HOH A . F 4 HOH 10 610 17 HOH HOH A . F 4 HOH 11 611 13 HOH HOH A . F 4 HOH 12 612 76 HOH HOH A . F 4 HOH 13 613 3 HOH HOH A . F 4 HOH 14 614 110 HOH HOH A . F 4 HOH 15 615 62 HOH HOH A . F 4 HOH 16 616 143 HOH HOH A . F 4 HOH 17 617 10 HOH HOH A . F 4 HOH 18 618 49 HOH HOH A . F 4 HOH 19 619 5 HOH HOH A . F 4 HOH 20 620 95 HOH HOH A . F 4 HOH 21 621 15 HOH HOH A . F 4 HOH 22 622 20 HOH HOH A . F 4 HOH 23 623 145 HOH HOH A . F 4 HOH 24 624 140 HOH HOH A . F 4 HOH 25 625 26 HOH HOH A . F 4 HOH 26 626 54 HOH HOH A . F 4 HOH 27 627 23 HOH HOH A . F 4 HOH 28 628 126 HOH HOH A . F 4 HOH 29 629 59 HOH HOH A . F 4 HOH 30 630 25 HOH HOH A . F 4 HOH 31 631 28 HOH HOH A . F 4 HOH 32 632 87 HOH HOH A . F 4 HOH 33 633 66 HOH HOH A . F 4 HOH 34 634 1 HOH HOH A . F 4 HOH 35 635 121 HOH HOH A . F 4 HOH 36 636 107 HOH HOH A . F 4 HOH 37 637 94 HOH HOH A . F 4 HOH 38 638 43 HOH HOH A . F 4 HOH 39 639 72 HOH HOH A . F 4 HOH 40 640 51 HOH HOH A . F 4 HOH 41 641 4 HOH HOH A . F 4 HOH 42 642 84 HOH HOH A . F 4 HOH 43 643 9 HOH HOH A . F 4 HOH 44 644 64 HOH HOH A . F 4 HOH 45 645 14 HOH HOH A . F 4 HOH 46 646 32 HOH HOH A . F 4 HOH 47 647 39 HOH HOH A . F 4 HOH 48 648 6 HOH HOH A . F 4 HOH 49 649 12 HOH HOH A . F 4 HOH 50 650 70 HOH HOH A . F 4 HOH 51 651 27 HOH HOH A . F 4 HOH 52 652 53 HOH HOH A . F 4 HOH 53 653 52 HOH HOH A . F 4 HOH 54 654 104 HOH HOH A . F 4 HOH 55 655 67 HOH HOH A . F 4 HOH 56 656 11 HOH HOH A . F 4 HOH 57 657 118 HOH HOH A . F 4 HOH 58 658 8 HOH HOH A . F 4 HOH 59 659 40 HOH HOH A . F 4 HOH 60 660 57 HOH HOH A . F 4 HOH 61 661 38 HOH HOH A . F 4 HOH 62 662 68 HOH HOH A . F 4 HOH 63 663 46 HOH HOH A . F 4 HOH 64 664 125 HOH HOH A . F 4 HOH 65 665 50 HOH HOH A . F 4 HOH 66 666 91 HOH HOH A . F 4 HOH 67 667 109 HOH HOH A . F 4 HOH 68 668 63 HOH HOH A . F 4 HOH 69 669 119 HOH HOH A . F 4 HOH 70 670 18 HOH HOH A . F 4 HOH 71 671 135 HOH HOH A . F 4 HOH 72 672 47 HOH HOH A . F 4 HOH 73 673 2 HOH HOH A . F 4 HOH 74 674 69 HOH HOH A . F 4 HOH 75 675 132 HOH HOH A . F 4 HOH 76 676 65 HOH HOH A . F 4 HOH 77 677 103 HOH HOH A . F 4 HOH 78 678 112 HOH HOH A . F 4 HOH 79 679 79 HOH HOH A . F 4 HOH 80 680 44 HOH HOH A . F 4 HOH 81 681 117 HOH HOH A . F 4 HOH 82 682 75 HOH HOH A . F 4 HOH 83 683 138 HOH HOH A . F 4 HOH 84 684 90 HOH HOH A . F 4 HOH 85 685 71 HOH HOH A . F 4 HOH 86 686 55 HOH HOH A . F 4 HOH 87 687 73 HOH HOH A . F 4 HOH 88 688 108 HOH HOH A . F 4 HOH 89 689 122 HOH HOH A . F 4 HOH 90 690 146 HOH HOH A . F 4 HOH 91 691 124 HOH HOH A . F 4 HOH 92 692 58 HOH HOH A . F 4 HOH 93 693 92 HOH HOH A . F 4 HOH 94 694 136 HOH HOH A . F 4 HOH 95 695 56 HOH HOH A . F 4 HOH 96 696 98 HOH HOH A . F 4 HOH 97 697 116 HOH HOH A . F 4 HOH 98 698 60 HOH HOH A . F 4 HOH 99 699 48 HOH HOH A . F 4 HOH 100 700 113 HOH HOH A . F 4 HOH 101 701 97 HOH HOH A . F 4 HOH 102 702 85 HOH HOH A . F 4 HOH 103 703 111 HOH HOH A . F 4 HOH 104 704 102 HOH HOH A . F 4 HOH 105 705 150 HOH HOH A . F 4 HOH 106 706 144 HOH HOH A . F 4 HOH 107 707 151 HOH HOH A . F 4 HOH 108 708 147 HOH HOH A . F 4 HOH 109 709 93 HOH HOH A . F 4 HOH 110 710 133 HOH HOH A . F 4 HOH 111 711 83 HOH HOH A . F 4 HOH 112 712 127 HOH HOH A . F 4 HOH 113 713 129 HOH HOH A . F 4 HOH 114 714 30 HOH HOH A . F 4 HOH 115 715 123 HOH HOH A . F 4 HOH 116 716 100 HOH HOH A . F 4 HOH 117 717 80 HOH HOH A . F 4 HOH 118 718 134 HOH HOH A . F 4 HOH 119 719 21 HOH HOH A . F 4 HOH 120 720 137 HOH HOH A . F 4 HOH 121 721 29 HOH HOH A . F 4 HOH 122 722 128 HOH HOH A . F 4 HOH 123 723 142 HOH HOH A . F 4 HOH 124 724 131 HOH HOH A . F 4 HOH 125 725 130 HOH HOH A . F 4 HOH 126 726 42 HOH HOH A . F 4 HOH 127 727 141 HOH HOH A . F 4 HOH 128 728 139 HOH HOH A . F 4 HOH 129 729 114 HOH HOH A . F 4 HOH 130 730 24 HOH HOH A . F 4 HOH 131 731 99 HOH HOH A . F 4 HOH 132 732 105 HOH HOH A . F 4 HOH 133 733 96 HOH HOH A . F 4 HOH 134 734 120 HOH HOH A . F 4 HOH 135 735 86 HOH HOH A . F 4 HOH 136 736 41 HOH HOH A . F 4 HOH 137 737 82 HOH HOH A . F 4 HOH 138 738 78 HOH HOH A . F 4 HOH 139 739 22 HOH HOH A . F 4 HOH 140 740 81 HOH HOH A . F 4 HOH 141 741 77 HOH HOH A . F 4 HOH 142 742 74 HOH HOH A . F 4 HOH 143 743 148 HOH HOH A . F 4 HOH 144 744 61 HOH HOH A . F 4 HOH 145 745 31 HOH HOH A . F 4 HOH 146 746 106 HOH HOH A . F 4 HOH 147 747 149 HOH HOH A . F 4 HOH 148 748 33 HOH HOH A . F 4 HOH 149 749 37 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CME _pdbx_struct_mod_residue.label_seq_id 83 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CME _pdbx_struct_mod_residue.auth_seq_id 425 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 685 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-09-06 2 'Structure model' 1 1 2018-08-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 1 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? 3.3.22 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 7 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL ? ? ? . 8 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 434 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 434 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 434 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 112.59 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation -5.71 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 746 ? 5.84 . 2 1 O ? A HOH 747 ? 6.87 . 3 1 O ? A HOH 748 ? 7.99 . 4 1 O ? A HOH 749 ? 8.19 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 344 ? CG ? A MET 2 CG 2 1 Y 1 A MET 344 ? SD ? A MET 2 SD 3 1 Y 1 A MET 344 ? CE ? A MET 2 CE 4 1 Y 1 A GLN 345 ? CG ? A GLN 3 CG 5 1 Y 1 A GLN 345 ? CD ? A GLN 3 CD 6 1 Y 1 A GLN 345 ? OE1 ? A GLN 3 OE1 7 1 Y 1 A GLN 345 ? NE2 ? A GLN 3 NE2 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Biotechnolgy' India ? 1 SERB-DST India ? 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'TRIETHYLENE GLYCOL' PGE 3 GLYCEROL GOL 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #