data_5XHK # _entry.id 5XHK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5XHK pdb_00005xhk 10.2210/pdb5xhk/pdb WWPDB D_1300003545 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5XHE _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XHK _pdbx_database_status.recvd_initial_deposition_date 2017-04-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Padmanabhan, B.' 1 ? 'Mathur, S.' 2 ? 'Tripathi, S.' 3 ? 'Deshmukh, P.' 4 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary 'J. Biomol. Struct. Dyn.' JBSDD6 0646 1538-0254 ? ? 36 ? 2342 2360 'Insights into the crystal structure of BRD2-BD2 - phenanthridinone complex and theoretical studies on phenanthridinone analogs.' 2018 ? 10.1080/07391102.2017.1353441 28696179 ? ? ? ? ? ? ? ? US ? ? 1 'PLoS ONE' ? ? 1932-6203 ? ? 11 ? e0156344 ? 'A Novel Phenanthridionone Based Scaffold As a Potential Inhibitor of the BRD2 Bromodomain: Crystal Structure of the Complex.' 2016 ? 10.1371/journal.pone.0156344 27243809 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mathur, S.' 1 ? primary 'Deshmukh, P.' 2 ? primary 'Tripathi, S.' 3 ? primary 'Marimuthu, P.' 4 ? primary 'Padmanabhan, B.' 5 ? 1 'Tripathi, S.' 6 ? 1 'Mathur, S.' 7 ? 1 'Deshmukh, P.' 8 ? 1 'Manjula, R.' 9 ? 1 'Padmanabhan, B.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5XHK _cell.details ? _cell.formula_units_Z ? _cell.length_a 32.040 _cell.length_a_esd ? _cell.length_b 52.510 _cell.length_b_esd ? _cell.length_c 71.370 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 2' 13406.319 1 ? ? 'UNP RESIDUES 348-455' ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn METHOXYETHANE 60.095 1 ? ? ? ? 4 non-polymer syn 'phenanthridin-6(5H)-one' 195.217 1 ? ? ? ? 5 water nat water 18.015 199 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'O27.1.1,Really interesting new gene 3 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAHGSNPEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRL MFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_seq_one_letter_code_can ;AAHGSNPEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRL MFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 HIS n 1 4 GLY n 1 5 SER n 1 6 ASN n 1 7 PRO n 1 8 GLU n 1 9 GLN n 1 10 LEU n 1 11 LYS n 1 12 HIS n 1 13 CYS n 1 14 ASN n 1 15 GLY n 1 16 ILE n 1 17 LEU n 1 18 LYS n 1 19 GLU n 1 20 LEU n 1 21 LEU n 1 22 SER n 1 23 LYS n 1 24 LYS n 1 25 HIS n 1 26 ALA n 1 27 ALA n 1 28 TYR n 1 29 ALA n 1 30 TRP n 1 31 PRO n 1 32 PHE n 1 33 TYR n 1 34 LYS n 1 35 PRO n 1 36 VAL n 1 37 ASP n 1 38 ALA n 1 39 SER n 1 40 ALA n 1 41 LEU n 1 42 GLY n 1 43 LEU n 1 44 HIS n 1 45 ASP n 1 46 TYR n 1 47 HIS n 1 48 ASP n 1 49 ILE n 1 50 ILE n 1 51 LYS n 1 52 HIS n 1 53 PRO n 1 54 MET n 1 55 ASP n 1 56 LEU n 1 57 SER n 1 58 THR n 1 59 VAL n 1 60 LYS n 1 61 ARG n 1 62 LYS n 1 63 MET n 1 64 GLU n 1 65 ASN n 1 66 ARG n 1 67 ASP n 1 68 TYR n 1 69 ARG n 1 70 ASP n 1 71 ALA n 1 72 GLN n 1 73 GLU n 1 74 PHE n 1 75 ALA n 1 76 ALA n 1 77 ASP n 1 78 VAL n 1 79 ARG n 1 80 LEU n 1 81 MET n 1 82 PHE n 1 83 SER n 1 84 ASN n 1 85 CYS n 1 86 TYR n 1 87 LYS n 1 88 TYR n 1 89 ASN n 1 90 PRO n 1 91 PRO n 1 92 ASP n 1 93 HIS n 1 94 ASP n 1 95 VAL n 1 96 VAL n 1 97 ALA n 1 98 MET n 1 99 ALA n 1 100 ARG n 1 101 LYS n 1 102 LEU n 1 103 GLN n 1 104 ASP n 1 105 VAL n 1 106 PHE n 1 107 GLU n 1 108 PHE n 1 109 ARG n 1 110 TYR n 1 111 ALA n 1 112 LYS n 1 113 MET n 1 114 PRO n 1 115 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 115 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD2, KIAA9001, RING3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD2_HUMAN _struct_ref.pdbx_db_accession P25440 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYK YNPPDHDVVAMARKLQDVFEFRYAKMPD ; _struct_ref.pdbx_align_begin 348 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5XHK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25440 _struct_ref_seq.db_align_beg 348 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 455 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 348 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5XHK ALA A 1 ? UNP P25440 ? ? 'expression tag' 341 1 1 5XHK ALA A 2 ? UNP P25440 ? ? 'expression tag' 342 2 1 5XHK HIS A 3 ? UNP P25440 ? ? 'expression tag' 343 3 1 5XHK GLY A 4 ? UNP P25440 ? ? 'expression tag' 344 4 1 5XHK SER A 5 ? UNP P25440 ? ? 'expression tag' 345 5 1 5XHK ASN A 6 ? UNP P25440 ? ? 'expression tag' 346 6 1 5XHK PRO A 7 ? UNP P25440 ? ? 'expression tag' 347 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2ME non-polymer . METHOXYETHANE ? 'C3 H8 O' 60.095 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LDR non-polymer . 'phenanthridin-6(5H)-one' ? 'C13 H9 N O' 195.217 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XHK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.07 _exptl_crystal.description 'Thick plates.' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25% PEG MME 2000, 10% Glycerol, Tris-Cl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-02-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'SI (111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 9.08 _reflns.entry_id 5XHK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.28 _reflns.d_resolution_low 42.296 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 25998 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 83.200 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.300 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 8.100 _reflns.pdbx_netI_over_sigmaI 11.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.063 _reflns.pdbx_Rpim_I_all 0.032 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.28 _reflns_shell.d_res_low 1.350 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.500 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 88.000 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.291 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.000 _reflns_shell.pdbx_Rsym_value 0.291 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.351 _reflns_shell.pdbx_Rpim_I_all 0.192 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.89 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.2800 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] -0.3800 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] 0.1100 _refine.B_iso_max 44.450 _refine.B_iso_mean 13.5420 _refine.B_iso_min 4.560 _refine.correlation_coeff_Fo_to_Fc 0.9670 _refine.correlation_coeff_Fo_to_Fc_free 0.9580 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5XHK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.2800 _refine.ls_d_res_low 20.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24672 _refine.ls_number_reflns_R_free 1280 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 82.4000 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1587 _refine.ls_R_factor_R_free 0.1919 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1570 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5IG6 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.0670 _refine.pdbx_overall_ESU_R_Free 0.0600 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.4780 _refine.overall_SU_ML 0.0290 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.2800 _refine_hist.d_res_low 20.0000 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 211 _refine_hist.number_atoms_total 1198 _refine_hist.pdbx_number_residues_total 115 _refine_hist.pdbx_B_iso_mean_ligand 17.66 _refine_hist.pdbx_B_iso_mean_solvent 24.98 _refine_hist.pdbx_number_atoms_protein 941 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.019 1090 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 1.179 1.988 1479 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 4.499 5.000 134 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.632 23.519 54 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 12.271 15.000 191 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 19.602 15.000 7 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.083 0.200 143 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.021 854 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 1.207 3.000 1090 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 14.410 5.000 67 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 5.748 5.000 1195 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.2840 _refine_ls_shell.d_res_low 1.3170 _refine_ls_shell.number_reflns_all 1973 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 91 _refine_ls_shell.number_reflns_R_work 1882 _refine_ls_shell.percent_reflns_obs 87.3000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2930 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2120 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5XHK _struct.title 'Crystal structure of the BRD2-BD2 in complex with phenanthridinone' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XHK _struct_keywords.text 'bromodomain, BET family, BRD2, Phenanthridinone, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 5 ? LEU A 21 ? SER A 345 LEU A 361 1 ? 17 HELX_P HELX_P2 AA2 SER A 22 ? LYS A 24 ? SER A 362 LYS A 364 5 ? 3 HELX_P HELX_P3 AA3 HIS A 25 ? TRP A 30 ? HIS A 365 TRP A 370 1 ? 6 HELX_P HELX_P4 AA4 PRO A 31 ? TYR A 33 ? PRO A 371 TYR A 373 5 ? 3 HELX_P HELX_P5 AA5 ASP A 37 ? GLY A 42 ? ASP A 377 GLY A 382 1 ? 6 HELX_P HELX_P6 AA6 ASP A 45 ? ILE A 50 ? ASP A 385 ILE A 390 1 ? 6 HELX_P HELX_P7 AA7 ASP A 55 ? ASN A 65 ? ASP A 395 ASN A 405 1 ? 11 HELX_P HELX_P8 AA8 ASP A 70 ? ASN A 89 ? ASP A 410 ASN A 429 1 ? 20 HELX_P HELX_P9 AA9 HIS A 93 ? ALA A 111 ? HIS A 433 ALA A 451 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 501 ? 8 'binding site for residue GOL A 501' AC2 Software A GOL 502 ? 6 'binding site for residue GOL A 502' AC3 Software A 2ME 503 ? 4 'binding site for residue 2ME A 503' AC4 Software A LDR 504 ? 8 'binding site for residue LDR A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TYR A 28 ? TYR A 368 . ? 1_455 ? 2 AC1 8 LYS A 62 ? LYS A 402 . ? 1_555 ? 3 AC1 8 ASP A 67 ? ASP A 407 . ? 1_555 ? 4 AC1 8 MET A 98 ? MET A 438 . ? 1_455 ? 5 AC1 8 LYS A 101 ? LYS A 441 . ? 1_455 ? 6 AC1 8 HOH F . ? HOH A 607 . ? 1_555 ? 7 AC1 8 HOH F . ? HOH A 617 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 662 . ? 1_455 ? 9 AC2 6 LEU A 21 ? LEU A 361 . ? 1_555 ? 10 AC2 6 TYR A 33 ? TYR A 373 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH A 601 . ? 1_555 ? 12 AC2 6 HOH F . ? HOH A 602 . ? 1_555 ? 13 AC2 6 HOH F . ? HOH A 668 . ? 1_555 ? 14 AC2 6 HOH F . ? HOH A 728 . ? 3_555 ? 15 AC3 4 TRP A 30 ? TRP A 370 . ? 1_555 ? 16 AC3 4 VAL A 95 ? VAL A 435 . ? 1_555 ? 17 AC3 4 MET A 98 ? MET A 438 . ? 1_555 ? 18 AC3 4 LDR E . ? LDR A 504 . ? 1_555 ? 19 AC4 8 PRO A 31 ? PRO A 371 . ? 1_555 ? 20 AC4 8 VAL A 36 ? VAL A 376 . ? 1_555 ? 21 AC4 8 LEU A 41 ? LEU A 381 . ? 1_555 ? 22 AC4 8 LEU A 43 ? LEU A 383 . ? 1_555 ? 23 AC4 8 CYS A 85 ? CYS A 425 . ? 1_555 ? 24 AC4 8 ASN A 89 ? ASN A 429 . ? 1_555 ? 25 AC4 8 2ME D . ? 2ME A 503 . ? 1_555 ? 26 AC4 8 HOH F . ? HOH A 604 . ? 1_555 ? # _atom_sites.entry_id 5XHK _atom_sites.fract_transf_matrix[1][1] 0.031211 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019044 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014011 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 341 341 ALA ALA A . n A 1 2 ALA 2 342 342 ALA ALA A . n A 1 3 HIS 3 343 343 HIS HIS A . n A 1 4 GLY 4 344 344 GLY GLY A . n A 1 5 SER 5 345 345 SER SER A . n A 1 6 ASN 6 346 346 ASN ASN A . n A 1 7 PRO 7 347 347 PRO PRO A . n A 1 8 GLU 8 348 348 GLU GLU A . n A 1 9 GLN 9 349 349 GLN GLN A . n A 1 10 LEU 10 350 350 LEU LEU A . n A 1 11 LYS 11 351 351 LYS LYS A . n A 1 12 HIS 12 352 352 HIS HIS A . n A 1 13 CYS 13 353 353 CYS CYS A . n A 1 14 ASN 14 354 354 ASN ASN A . n A 1 15 GLY 15 355 355 GLY GLY A . n A 1 16 ILE 16 356 356 ILE ILE A . n A 1 17 LEU 17 357 357 LEU LEU A . n A 1 18 LYS 18 358 358 LYS LYS A . n A 1 19 GLU 19 359 359 GLU GLU A . n A 1 20 LEU 20 360 360 LEU LEU A . n A 1 21 LEU 21 361 361 LEU LEU A . n A 1 22 SER 22 362 362 SER SER A . n A 1 23 LYS 23 363 363 LYS LYS A . n A 1 24 LYS 24 364 364 LYS LYS A . n A 1 25 HIS 25 365 365 HIS HIS A . n A 1 26 ALA 26 366 366 ALA ALA A . n A 1 27 ALA 27 367 367 ALA ALA A . n A 1 28 TYR 28 368 368 TYR TYR A . n A 1 29 ALA 29 369 369 ALA ALA A . n A 1 30 TRP 30 370 370 TRP TRP A . n A 1 31 PRO 31 371 371 PRO PRO A . n A 1 32 PHE 32 372 372 PHE PHE A . n A 1 33 TYR 33 373 373 TYR TYR A . n A 1 34 LYS 34 374 374 LYS LYS A . n A 1 35 PRO 35 375 375 PRO PRO A . n A 1 36 VAL 36 376 376 VAL VAL A . n A 1 37 ASP 37 377 377 ASP ASP A . n A 1 38 ALA 38 378 378 ALA ALA A . n A 1 39 SER 39 379 379 SER SER A . n A 1 40 ALA 40 380 380 ALA ALA A . n A 1 41 LEU 41 381 381 LEU LEU A . n A 1 42 GLY 42 382 382 GLY GLY A . n A 1 43 LEU 43 383 383 LEU LEU A . n A 1 44 HIS 44 384 384 HIS HIS A . n A 1 45 ASP 45 385 385 ASP ASP A . n A 1 46 TYR 46 386 386 TYR TYR A . n A 1 47 HIS 47 387 387 HIS HIS A . n A 1 48 ASP 48 388 388 ASP ASP A . n A 1 49 ILE 49 389 389 ILE ILE A . n A 1 50 ILE 50 390 390 ILE ILE A . n A 1 51 LYS 51 391 391 LYS LYS A . n A 1 52 HIS 52 392 392 HIS HIS A . n A 1 53 PRO 53 393 393 PRO PRO A . n A 1 54 MET 54 394 394 MET MET A . n A 1 55 ASP 55 395 395 ASP ASP A . n A 1 56 LEU 56 396 396 LEU LEU A . n A 1 57 SER 57 397 397 SER SER A . n A 1 58 THR 58 398 398 THR THR A . n A 1 59 VAL 59 399 399 VAL VAL A . n A 1 60 LYS 60 400 400 LYS LYS A . n A 1 61 ARG 61 401 401 ARG ARG A . n A 1 62 LYS 62 402 402 LYS LYS A . n A 1 63 MET 63 403 403 MET MET A . n A 1 64 GLU 64 404 404 GLU GLU A . n A 1 65 ASN 65 405 405 ASN ASN A . n A 1 66 ARG 66 406 406 ARG ARG A . n A 1 67 ASP 67 407 407 ASP ASP A . n A 1 68 TYR 68 408 408 TYR TYR A . n A 1 69 ARG 69 409 409 ARG ARG A . n A 1 70 ASP 70 410 410 ASP ASP A . n A 1 71 ALA 71 411 411 ALA ALA A . n A 1 72 GLN 72 412 412 GLN GLN A . n A 1 73 GLU 73 413 413 GLU GLU A . n A 1 74 PHE 74 414 414 PHE PHE A . n A 1 75 ALA 75 415 415 ALA ALA A . n A 1 76 ALA 76 416 416 ALA ALA A . n A 1 77 ASP 77 417 417 ASP ASP A . n A 1 78 VAL 78 418 418 VAL VAL A . n A 1 79 ARG 79 419 419 ARG ARG A . n A 1 80 LEU 80 420 420 LEU LEU A . n A 1 81 MET 81 421 421 MET MET A . n A 1 82 PHE 82 422 422 PHE PHE A . n A 1 83 SER 83 423 423 SER SER A . n A 1 84 ASN 84 424 424 ASN ASN A . n A 1 85 CYS 85 425 425 CYS CYS A . n A 1 86 TYR 86 426 426 TYR TYR A . n A 1 87 LYS 87 427 427 LYS LYS A . n A 1 88 TYR 88 428 428 TYR TYR A . n A 1 89 ASN 89 429 429 ASN ASN A . n A 1 90 PRO 90 430 430 PRO PRO A . n A 1 91 PRO 91 431 431 PRO PRO A . n A 1 92 ASP 92 432 432 ASP ASP A . n A 1 93 HIS 93 433 433 HIS HIS A . n A 1 94 ASP 94 434 434 ASP ASP A . n A 1 95 VAL 95 435 435 VAL VAL A . n A 1 96 VAL 96 436 436 VAL VAL A . n A 1 97 ALA 97 437 437 ALA ALA A . n A 1 98 MET 98 438 438 MET MET A . n A 1 99 ALA 99 439 439 ALA ALA A . n A 1 100 ARG 100 440 440 ARG ARG A . n A 1 101 LYS 101 441 441 LYS LYS A . n A 1 102 LEU 102 442 442 LEU LEU A . n A 1 103 GLN 103 443 443 GLN GLN A . n A 1 104 ASP 104 444 444 ASP ASP A . n A 1 105 VAL 105 445 445 VAL VAL A . n A 1 106 PHE 106 446 446 PHE PHE A . n A 1 107 GLU 107 447 447 GLU GLU A . n A 1 108 PHE 108 448 448 PHE PHE A . n A 1 109 ARG 109 449 449 ARG ARG A . n A 1 110 TYR 110 450 450 TYR TYR A . n A 1 111 ALA 111 451 451 ALA ALA A . n A 1 112 LYS 112 452 452 LYS LYS A . n A 1 113 MET 113 453 453 MET MET A . n A 1 114 PRO 114 454 454 PRO PRO A . n A 1 115 ASP 115 455 455 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 501 1 GOL GOL A . C 2 GOL 1 502 2 GOL GOL A . D 3 2ME 1 503 1 2ME PG A . E 4 LDR 1 504 1 LDR L10 A . F 5 HOH 1 601 111 HOH HOH A . F 5 HOH 2 602 115 HOH HOH A . F 5 HOH 3 603 107 HOH HOH A . F 5 HOH 4 604 1 HOH HOH A . F 5 HOH 5 605 6 HOH HOH A . F 5 HOH 6 606 7 HOH HOH A . F 5 HOH 7 607 20 HOH HOH A . F 5 HOH 8 608 124 HOH HOH A . F 5 HOH 9 609 131 HOH HOH A . F 5 HOH 10 610 41 HOH HOH A . F 5 HOH 11 611 23 HOH HOH A . F 5 HOH 12 612 66 HOH HOH A . F 5 HOH 13 613 86 HOH HOH A . F 5 HOH 14 614 57 HOH HOH A . F 5 HOH 15 615 54 HOH HOH A . F 5 HOH 16 616 158 HOH HOH A . F 5 HOH 17 617 28 HOH HOH A . F 5 HOH 18 618 67 HOH HOH A . F 5 HOH 19 619 2 HOH HOH A . F 5 HOH 20 620 149 HOH HOH A . F 5 HOH 21 621 61 HOH HOH A . F 5 HOH 22 622 14 HOH HOH A . F 5 HOH 23 623 11 HOH HOH A . F 5 HOH 24 624 91 HOH HOH A . F 5 HOH 25 625 5 HOH HOH A . F 5 HOH 26 626 55 HOH HOH A . F 5 HOH 27 627 27 HOH HOH A . F 5 HOH 28 628 69 HOH HOH A . F 5 HOH 29 629 102 HOH HOH A . F 5 HOH 30 630 157 HOH HOH A . F 5 HOH 31 631 43 HOH HOH A . F 5 HOH 32 632 4 HOH HOH A . F 5 HOH 33 633 126 HOH HOH A . F 5 HOH 34 634 63 HOH HOH A . F 5 HOH 35 635 10 HOH HOH A . F 5 HOH 36 636 8 HOH HOH A . F 5 HOH 37 637 22 HOH HOH A . F 5 HOH 38 638 45 HOH HOH A . F 5 HOH 39 639 89 HOH HOH A . F 5 HOH 40 640 70 HOH HOH A . F 5 HOH 41 641 40 HOH HOH A . F 5 HOH 42 642 88 HOH HOH A . F 5 HOH 43 643 52 HOH HOH A . F 5 HOH 44 644 148 HOH HOH A . F 5 HOH 45 645 42 HOH HOH A . F 5 HOH 46 646 143 HOH HOH A . F 5 HOH 47 647 84 HOH HOH A . F 5 HOH 48 648 56 HOH HOH A . F 5 HOH 49 649 79 HOH HOH A . F 5 HOH 50 650 13 HOH HOH A . F 5 HOH 51 651 151 HOH HOH A . F 5 HOH 52 652 36 HOH HOH A . F 5 HOH 53 653 98 HOH HOH A . F 5 HOH 54 654 150 HOH HOH A . F 5 HOH 55 655 17 HOH HOH A . F 5 HOH 56 656 71 HOH HOH A . F 5 HOH 57 657 138 HOH HOH A . F 5 HOH 58 658 15 HOH HOH A . F 5 HOH 59 659 169 HOH HOH A . F 5 HOH 60 660 46 HOH HOH A . F 5 HOH 61 661 147 HOH HOH A . F 5 HOH 62 662 12 HOH HOH A . F 5 HOH 63 663 9 HOH HOH A . F 5 HOH 64 664 177 HOH HOH A . F 5 HOH 65 665 146 HOH HOH A . F 5 HOH 66 666 49 HOH HOH A . F 5 HOH 67 667 18 HOH HOH A . F 5 HOH 68 668 116 HOH HOH A . F 5 HOH 69 669 68 HOH HOH A . F 5 HOH 70 670 75 HOH HOH A . F 5 HOH 71 671 156 HOH HOH A . F 5 HOH 72 672 26 HOH HOH A . F 5 HOH 73 673 83 HOH HOH A . F 5 HOH 74 674 16 HOH HOH A . F 5 HOH 75 675 21 HOH HOH A . F 5 HOH 76 676 180 HOH HOH A . F 5 HOH 77 677 136 HOH HOH A . F 5 HOH 78 678 153 HOH HOH A . F 5 HOH 79 679 164 HOH HOH A . F 5 HOH 80 680 47 HOH HOH A . F 5 HOH 81 681 35 HOH HOH A . F 5 HOH 82 682 165 HOH HOH A . F 5 HOH 83 683 38 HOH HOH A . F 5 HOH 84 684 50 HOH HOH A . F 5 HOH 85 685 25 HOH HOH A . F 5 HOH 86 686 34 HOH HOH A . F 5 HOH 87 687 72 HOH HOH A . F 5 HOH 88 688 30 HOH HOH A . F 5 HOH 89 689 3 HOH HOH A . F 5 HOH 90 690 65 HOH HOH A . F 5 HOH 91 691 109 HOH HOH A . F 5 HOH 92 692 33 HOH HOH A . F 5 HOH 93 693 90 HOH HOH A . F 5 HOH 94 694 172 HOH HOH A . F 5 HOH 95 695 74 HOH HOH A . F 5 HOH 96 696 29 HOH HOH A . F 5 HOH 97 697 80 HOH HOH A . F 5 HOH 98 698 182 HOH HOH A . F 5 HOH 99 699 130 HOH HOH A . F 5 HOH 100 700 171 HOH HOH A . F 5 HOH 101 701 161 HOH HOH A . F 5 HOH 102 702 105 HOH HOH A . F 5 HOH 103 703 73 HOH HOH A . F 5 HOH 104 704 167 HOH HOH A . F 5 HOH 105 705 152 HOH HOH A . F 5 HOH 106 706 199 HOH HOH A . F 5 HOH 107 707 160 HOH HOH A . F 5 HOH 108 708 120 HOH HOH A . F 5 HOH 109 709 19 HOH HOH A . F 5 HOH 110 710 51 HOH HOH A . F 5 HOH 111 711 135 HOH HOH A . F 5 HOH 112 712 48 HOH HOH A . F 5 HOH 113 713 82 HOH HOH A . F 5 HOH 114 714 129 HOH HOH A . F 5 HOH 115 715 176 HOH HOH A . F 5 HOH 116 716 100 HOH HOH A . F 5 HOH 117 717 77 HOH HOH A . F 5 HOH 118 718 44 HOH HOH A . F 5 HOH 119 719 53 HOH HOH A . F 5 HOH 120 720 140 HOH HOH A . F 5 HOH 121 721 154 HOH HOH A . F 5 HOH 122 722 94 HOH HOH A . F 5 HOH 123 723 31 HOH HOH A . F 5 HOH 124 724 170 HOH HOH A . F 5 HOH 125 725 85 HOH HOH A . F 5 HOH 126 726 174 HOH HOH A . F 5 HOH 127 727 103 HOH HOH A . F 5 HOH 128 728 144 HOH HOH A . F 5 HOH 129 729 145 HOH HOH A . F 5 HOH 130 730 155 HOH HOH A . F 5 HOH 131 731 168 HOH HOH A . F 5 HOH 132 732 187 HOH HOH A . F 5 HOH 133 733 78 HOH HOH A . F 5 HOH 134 734 166 HOH HOH A . F 5 HOH 135 735 62 HOH HOH A . F 5 HOH 136 736 81 HOH HOH A . F 5 HOH 137 737 196 HOH HOH A . F 5 HOH 138 738 137 HOH HOH A . F 5 HOH 139 739 92 HOH HOH A . F 5 HOH 140 740 132 HOH HOH A . F 5 HOH 141 741 87 HOH HOH A . F 5 HOH 142 742 142 HOH HOH A . F 5 HOH 143 743 76 HOH HOH A . F 5 HOH 144 744 194 HOH HOH A . F 5 HOH 145 745 24 HOH HOH A . F 5 HOH 146 746 181 HOH HOH A . F 5 HOH 147 747 141 HOH HOH A . F 5 HOH 148 748 127 HOH HOH A . F 5 HOH 149 749 64 HOH HOH A . F 5 HOH 150 750 39 HOH HOH A . F 5 HOH 151 751 183 HOH HOH A . F 5 HOH 152 752 189 HOH HOH A . F 5 HOH 153 753 198 HOH HOH A . F 5 HOH 154 754 139 HOH HOH A . F 5 HOH 155 755 175 HOH HOH A . F 5 HOH 156 756 195 HOH HOH A . F 5 HOH 157 757 188 HOH HOH A . F 5 HOH 158 758 58 HOH HOH A . F 5 HOH 159 759 113 HOH HOH A . F 5 HOH 160 760 190 HOH HOH A . F 5 HOH 161 761 192 HOH HOH A . F 5 HOH 162 762 185 HOH HOH A . F 5 HOH 163 763 173 HOH HOH A . F 5 HOH 164 764 178 HOH HOH A . F 5 HOH 165 765 133 HOH HOH A . F 5 HOH 166 766 162 HOH HOH A . F 5 HOH 167 767 163 HOH HOH A . F 5 HOH 168 768 32 HOH HOH A . F 5 HOH 169 769 117 HOH HOH A . F 5 HOH 170 770 112 HOH HOH A . F 5 HOH 171 771 106 HOH HOH A . F 5 HOH 172 772 128 HOH HOH A . F 5 HOH 173 773 134 HOH HOH A . F 5 HOH 174 774 118 HOH HOH A . F 5 HOH 175 775 122 HOH HOH A . F 5 HOH 176 776 119 HOH HOH A . F 5 HOH 177 777 60 HOH HOH A . F 5 HOH 178 778 95 HOH HOH A . F 5 HOH 179 779 191 HOH HOH A . F 5 HOH 180 780 108 HOH HOH A . F 5 HOH 181 781 110 HOH HOH A . F 5 HOH 182 782 123 HOH HOH A . F 5 HOH 183 783 37 HOH HOH A . F 5 HOH 184 784 101 HOH HOH A . F 5 HOH 185 785 93 HOH HOH A . F 5 HOH 186 786 99 HOH HOH A . F 5 HOH 187 787 125 HOH HOH A . F 5 HOH 188 788 186 HOH HOH A . F 5 HOH 189 789 96 HOH HOH A . F 5 HOH 190 790 184 HOH HOH A . F 5 HOH 191 791 121 HOH HOH A . F 5 HOH 192 792 193 HOH HOH A . F 5 HOH 193 793 114 HOH HOH A . F 5 HOH 194 794 179 HOH HOH A . F 5 HOH 195 795 59 HOH HOH A . F 5 HOH 196 796 197 HOH HOH A . F 5 HOH 197 797 104 HOH HOH A . F 5 HOH 198 798 97 HOH HOH A . F 5 HOH 199 799 159 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 560 ? 1 MORE -3 ? 1 'SSA (A^2)' 7040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 725 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-09-06 2 'Structure model' 1 1 2018-08-01 3 'Structure model' 1 2 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 4 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 796 ? 5.83 . 2 1 O ? A HOH 797 ? . 5.86 3 1 O ? A HOH 798 ? 5.93 . 4 1 O ? A HOH 799 ? . 6.34 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2ME "CA'" C N N 1 2ME "CB'" C N N 2 2ME "OC'" O N N 3 2ME "CD'" C N N 4 2ME "HA'1" H N N 5 2ME "HA'2" H N N 6 2ME "HA'3" H N N 7 2ME "HB'1" H N N 8 2ME "HB'2" H N N 9 2ME "HD'1" H N N 10 2ME "HD'2" H N N 11 2ME "HD'3" H N N 12 ALA N N N N 13 ALA CA C N S 14 ALA C C N N 15 ALA O O N N 16 ALA CB C N N 17 ALA OXT O N N 18 ALA H H N N 19 ALA H2 H N N 20 ALA HA H N N 21 ALA HB1 H N N 22 ALA HB2 H N N 23 ALA HB3 H N N 24 ALA HXT H N N 25 ARG N N N N 26 ARG CA C N S 27 ARG C C N N 28 ARG O O N N 29 ARG CB C N N 30 ARG CG C N N 31 ARG CD C N N 32 ARG NE N N N 33 ARG CZ C N N 34 ARG NH1 N N N 35 ARG NH2 N N N 36 ARG OXT O N N 37 ARG H H N N 38 ARG H2 H N N 39 ARG HA H N N 40 ARG HB2 H N N 41 ARG HB3 H N N 42 ARG HG2 H N N 43 ARG HG3 H N N 44 ARG HD2 H N N 45 ARG HD3 H N N 46 ARG HE H N N 47 ARG HH11 H N N 48 ARG HH12 H N N 49 ARG HH21 H N N 50 ARG HH22 H N N 51 ARG HXT H N N 52 ASN N N N N 53 ASN CA C N S 54 ASN C C N N 55 ASN O O N N 56 ASN CB C N N 57 ASN CG C N N 58 ASN OD1 O N N 59 ASN ND2 N N N 60 ASN OXT O N N 61 ASN H H N N 62 ASN H2 H N N 63 ASN HA H N N 64 ASN HB2 H N N 65 ASN HB3 H N N 66 ASN HD21 H N N 67 ASN HD22 H N N 68 ASN HXT H N N 69 ASP N N N N 70 ASP CA C N S 71 ASP C C N N 72 ASP O O N N 73 ASP CB C N N 74 ASP CG C N N 75 ASP OD1 O N N 76 ASP OD2 O N N 77 ASP OXT O N N 78 ASP H H N N 79 ASP H2 H N N 80 ASP HA H N N 81 ASP HB2 H N N 82 ASP HB3 H N N 83 ASP HD2 H N N 84 ASP HXT H N N 85 CYS N N N N 86 CYS CA C N R 87 CYS C C N N 88 CYS O O N N 89 CYS CB C N N 90 CYS SG S N N 91 CYS OXT O N N 92 CYS H H N N 93 CYS H2 H N N 94 CYS HA H N N 95 CYS HB2 H N N 96 CYS HB3 H N N 97 CYS HG H N N 98 CYS HXT H N N 99 GLN N N N N 100 GLN CA C N S 101 GLN C C N N 102 GLN O O N N 103 GLN CB C N N 104 GLN CG C N N 105 GLN CD C N N 106 GLN OE1 O N N 107 GLN NE2 N N N 108 GLN OXT O N N 109 GLN H H N N 110 GLN H2 H N N 111 GLN HA H N N 112 GLN HB2 H N N 113 GLN HB3 H N N 114 GLN HG2 H N N 115 GLN HG3 H N N 116 GLN HE21 H N N 117 GLN HE22 H N N 118 GLN HXT H N N 119 GLU N N N N 120 GLU CA C N S 121 GLU C C N N 122 GLU O O N N 123 GLU CB C N N 124 GLU CG C N N 125 GLU CD C N N 126 GLU OE1 O N N 127 GLU OE2 O N N 128 GLU OXT O N N 129 GLU H H N N 130 GLU H2 H N N 131 GLU HA H N N 132 GLU HB2 H N N 133 GLU HB3 H N N 134 GLU HG2 H N N 135 GLU HG3 H N N 136 GLU HE2 H N N 137 GLU HXT H N N 138 GLY N N N N 139 GLY CA C N N 140 GLY C C N N 141 GLY O O N N 142 GLY OXT O N N 143 GLY H H N N 144 GLY H2 H N N 145 GLY HA2 H N N 146 GLY HA3 H N N 147 GLY HXT H N N 148 GOL C1 C N N 149 GOL O1 O N N 150 GOL C2 C N N 151 GOL O2 O N N 152 GOL C3 C N N 153 GOL O3 O N N 154 GOL H11 H N N 155 GOL H12 H N N 156 GOL HO1 H N N 157 GOL H2 H N N 158 GOL HO2 H N N 159 GOL H31 H N N 160 GOL H32 H N N 161 GOL HO3 H N N 162 HIS N N N N 163 HIS CA C N S 164 HIS C C N N 165 HIS O O N N 166 HIS CB C N N 167 HIS CG C Y N 168 HIS ND1 N Y N 169 HIS CD2 C Y N 170 HIS CE1 C Y N 171 HIS NE2 N Y N 172 HIS OXT O N N 173 HIS H H N N 174 HIS H2 H N N 175 HIS HA H N N 176 HIS HB2 H N N 177 HIS HB3 H N N 178 HIS HD1 H N N 179 HIS HD2 H N N 180 HIS HE1 H N N 181 HIS HE2 H N N 182 HIS HXT H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 ILE N N N N 187 ILE CA C N S 188 ILE C C N N 189 ILE O O N N 190 ILE CB C N S 191 ILE CG1 C N N 192 ILE CG2 C N N 193 ILE CD1 C N N 194 ILE OXT O N N 195 ILE H H N N 196 ILE H2 H N N 197 ILE HA H N N 198 ILE HB H N N 199 ILE HG12 H N N 200 ILE HG13 H N N 201 ILE HG21 H N N 202 ILE HG22 H N N 203 ILE HG23 H N N 204 ILE HD11 H N N 205 ILE HD12 H N N 206 ILE HD13 H N N 207 ILE HXT H N N 208 LDR OAA O N N 209 LDR CAB C Y N 210 LDR CAC C Y N 211 LDR CAD C Y N 212 LDR CAE C Y N 213 LDR CAF C Y N 214 LDR CAG C Y N 215 LDR CAH C Y N 216 LDR CAI C Y N 217 LDR NAJ N N N 218 LDR CAK C N N 219 LDR CAL C Y N 220 LDR CAM C Y N 221 LDR CAN C Y N 222 LDR CAO C Y N 223 LDR HAB H N N 224 LDR HAC H N N 225 LDR HAD H N N 226 LDR HAE H N N 227 LDR HAF H N N 228 LDR HAG H N N 229 LDR HAH H N N 230 LDR HAI H N N 231 LDR HNAJ H N N 232 LEU N N N N 233 LEU CA C N S 234 LEU C C N N 235 LEU O O N N 236 LEU CB C N N 237 LEU CG C N N 238 LEU CD1 C N N 239 LEU CD2 C N N 240 LEU OXT O N N 241 LEU H H N N 242 LEU H2 H N N 243 LEU HA H N N 244 LEU HB2 H N N 245 LEU HB3 H N N 246 LEU HG H N N 247 LEU HD11 H N N 248 LEU HD12 H N N 249 LEU HD13 H N N 250 LEU HD21 H N N 251 LEU HD22 H N N 252 LEU HD23 H N N 253 LEU HXT H N N 254 LYS N N N N 255 LYS CA C N S 256 LYS C C N N 257 LYS O O N N 258 LYS CB C N N 259 LYS CG C N N 260 LYS CD C N N 261 LYS CE C N N 262 LYS NZ N N N 263 LYS OXT O N N 264 LYS H H N N 265 LYS H2 H N N 266 LYS HA H N N 267 LYS HB2 H N N 268 LYS HB3 H N N 269 LYS HG2 H N N 270 LYS HG3 H N N 271 LYS HD2 H N N 272 LYS HD3 H N N 273 LYS HE2 H N N 274 LYS HE3 H N N 275 LYS HZ1 H N N 276 LYS HZ2 H N N 277 LYS HZ3 H N N 278 LYS HXT H N N 279 MET N N N N 280 MET CA C N S 281 MET C C N N 282 MET O O N N 283 MET CB C N N 284 MET CG C N N 285 MET SD S N N 286 MET CE C N N 287 MET OXT O N N 288 MET H H N N 289 MET H2 H N N 290 MET HA H N N 291 MET HB2 H N N 292 MET HB3 H N N 293 MET HG2 H N N 294 MET HG3 H N N 295 MET HE1 H N N 296 MET HE2 H N N 297 MET HE3 H N N 298 MET HXT H N N 299 PHE N N N N 300 PHE CA C N S 301 PHE C C N N 302 PHE O O N N 303 PHE CB C N N 304 PHE CG C Y N 305 PHE CD1 C Y N 306 PHE CD2 C Y N 307 PHE CE1 C Y N 308 PHE CE2 C Y N 309 PHE CZ C Y N 310 PHE OXT O N N 311 PHE H H N N 312 PHE H2 H N N 313 PHE HA H N N 314 PHE HB2 H N N 315 PHE HB3 H N N 316 PHE HD1 H N N 317 PHE HD2 H N N 318 PHE HE1 H N N 319 PHE HE2 H N N 320 PHE HZ H N N 321 PHE HXT H N N 322 PRO N N N N 323 PRO CA C N S 324 PRO C C N N 325 PRO O O N N 326 PRO CB C N N 327 PRO CG C N N 328 PRO CD C N N 329 PRO OXT O N N 330 PRO H H N N 331 PRO HA H N N 332 PRO HB2 H N N 333 PRO HB3 H N N 334 PRO HG2 H N N 335 PRO HG3 H N N 336 PRO HD2 H N N 337 PRO HD3 H N N 338 PRO HXT H N N 339 SER N N N N 340 SER CA C N S 341 SER C C N N 342 SER O O N N 343 SER CB C N N 344 SER OG O N N 345 SER OXT O N N 346 SER H H N N 347 SER H2 H N N 348 SER HA H N N 349 SER HB2 H N N 350 SER HB3 H N N 351 SER HG H N N 352 SER HXT H N N 353 THR N N N N 354 THR CA C N S 355 THR C C N N 356 THR O O N N 357 THR CB C N R 358 THR OG1 O N N 359 THR CG2 C N N 360 THR OXT O N N 361 THR H H N N 362 THR H2 H N N 363 THR HA H N N 364 THR HB H N N 365 THR HG1 H N N 366 THR HG21 H N N 367 THR HG22 H N N 368 THR HG23 H N N 369 THR HXT H N N 370 TRP N N N N 371 TRP CA C N S 372 TRP C C N N 373 TRP O O N N 374 TRP CB C N N 375 TRP CG C Y N 376 TRP CD1 C Y N 377 TRP CD2 C Y N 378 TRP NE1 N Y N 379 TRP CE2 C Y N 380 TRP CE3 C Y N 381 TRP CZ2 C Y N 382 TRP CZ3 C Y N 383 TRP CH2 C Y N 384 TRP OXT O N N 385 TRP H H N N 386 TRP H2 H N N 387 TRP HA H N N 388 TRP HB2 H N N 389 TRP HB3 H N N 390 TRP HD1 H N N 391 TRP HE1 H N N 392 TRP HE3 H N N 393 TRP HZ2 H N N 394 TRP HZ3 H N N 395 TRP HH2 H N N 396 TRP HXT H N N 397 TYR N N N N 398 TYR CA C N S 399 TYR C C N N 400 TYR O O N N 401 TYR CB C N N 402 TYR CG C Y N 403 TYR CD1 C Y N 404 TYR CD2 C Y N 405 TYR CE1 C Y N 406 TYR CE2 C Y N 407 TYR CZ C Y N 408 TYR OH O N N 409 TYR OXT O N N 410 TYR H H N N 411 TYR H2 H N N 412 TYR HA H N N 413 TYR HB2 H N N 414 TYR HB3 H N N 415 TYR HD1 H N N 416 TYR HD2 H N N 417 TYR HE1 H N N 418 TYR HE2 H N N 419 TYR HH H N N 420 TYR HXT H N N 421 VAL N N N N 422 VAL CA C N S 423 VAL C C N N 424 VAL O O N N 425 VAL CB C N N 426 VAL CG1 C N N 427 VAL CG2 C N N 428 VAL OXT O N N 429 VAL H H N N 430 VAL H2 H N N 431 VAL HA H N N 432 VAL HB H N N 433 VAL HG11 H N N 434 VAL HG12 H N N 435 VAL HG13 H N N 436 VAL HG21 H N N 437 VAL HG22 H N N 438 VAL HG23 H N N 439 VAL HXT H N N 440 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2ME "CA'" "CB'" sing N N 1 2ME "CA'" "HA'1" sing N N 2 2ME "CA'" "HA'2" sing N N 3 2ME "CA'" "HA'3" sing N N 4 2ME "CB'" "OC'" sing N N 5 2ME "CB'" "HB'1" sing N N 6 2ME "CB'" "HB'2" sing N N 7 2ME "OC'" "CD'" sing N N 8 2ME "CD'" "HD'1" sing N N 9 2ME "CD'" "HD'2" sing N N 10 2ME "CD'" "HD'3" sing N N 11 ALA N CA sing N N 12 ALA N H sing N N 13 ALA N H2 sing N N 14 ALA CA C sing N N 15 ALA CA CB sing N N 16 ALA CA HA sing N N 17 ALA C O doub N N 18 ALA C OXT sing N N 19 ALA CB HB1 sing N N 20 ALA CB HB2 sing N N 21 ALA CB HB3 sing N N 22 ALA OXT HXT sing N N 23 ARG N CA sing N N 24 ARG N H sing N N 25 ARG N H2 sing N N 26 ARG CA C sing N N 27 ARG CA CB sing N N 28 ARG CA HA sing N N 29 ARG C O doub N N 30 ARG C OXT sing N N 31 ARG CB CG sing N N 32 ARG CB HB2 sing N N 33 ARG CB HB3 sing N N 34 ARG CG CD sing N N 35 ARG CG HG2 sing N N 36 ARG CG HG3 sing N N 37 ARG CD NE sing N N 38 ARG CD HD2 sing N N 39 ARG CD HD3 sing N N 40 ARG NE CZ sing N N 41 ARG NE HE sing N N 42 ARG CZ NH1 sing N N 43 ARG CZ NH2 doub N N 44 ARG NH1 HH11 sing N N 45 ARG NH1 HH12 sing N N 46 ARG NH2 HH21 sing N N 47 ARG NH2 HH22 sing N N 48 ARG OXT HXT sing N N 49 ASN N CA sing N N 50 ASN N H sing N N 51 ASN N H2 sing N N 52 ASN CA C sing N N 53 ASN CA CB sing N N 54 ASN CA HA sing N N 55 ASN C O doub N N 56 ASN C OXT sing N N 57 ASN CB CG sing N N 58 ASN CB HB2 sing N N 59 ASN CB HB3 sing N N 60 ASN CG OD1 doub N N 61 ASN CG ND2 sing N N 62 ASN ND2 HD21 sing N N 63 ASN ND2 HD22 sing N N 64 ASN OXT HXT sing N N 65 ASP N CA sing N N 66 ASP N H sing N N 67 ASP N H2 sing N N 68 ASP CA C sing N N 69 ASP CA CB sing N N 70 ASP CA HA sing N N 71 ASP C O doub N N 72 ASP C OXT sing N N 73 ASP CB CG sing N N 74 ASP CB HB2 sing N N 75 ASP CB HB3 sing N N 76 ASP CG OD1 doub N N 77 ASP CG OD2 sing N N 78 ASP OD2 HD2 sing N N 79 ASP OXT HXT sing N N 80 CYS N CA sing N N 81 CYS N H sing N N 82 CYS N H2 sing N N 83 CYS CA C sing N N 84 CYS CA CB sing N N 85 CYS CA HA sing N N 86 CYS C O doub N N 87 CYS C OXT sing N N 88 CYS CB SG sing N N 89 CYS CB HB2 sing N N 90 CYS CB HB3 sing N N 91 CYS SG HG sing N N 92 CYS OXT HXT sing N N 93 GLN N CA sing N N 94 GLN N H sing N N 95 GLN N H2 sing N N 96 GLN CA C sing N N 97 GLN CA CB sing N N 98 GLN CA HA sing N N 99 GLN C O doub N N 100 GLN C OXT sing N N 101 GLN CB CG sing N N 102 GLN CB HB2 sing N N 103 GLN CB HB3 sing N N 104 GLN CG CD sing N N 105 GLN CG HG2 sing N N 106 GLN CG HG3 sing N N 107 GLN CD OE1 doub N N 108 GLN CD NE2 sing N N 109 GLN NE2 HE21 sing N N 110 GLN NE2 HE22 sing N N 111 GLN OXT HXT sing N N 112 GLU N CA sing N N 113 GLU N H sing N N 114 GLU N H2 sing N N 115 GLU CA C sing N N 116 GLU CA CB sing N N 117 GLU CA HA sing N N 118 GLU C O doub N N 119 GLU C OXT sing N N 120 GLU CB CG sing N N 121 GLU CB HB2 sing N N 122 GLU CB HB3 sing N N 123 GLU CG CD sing N N 124 GLU CG HG2 sing N N 125 GLU CG HG3 sing N N 126 GLU CD OE1 doub N N 127 GLU CD OE2 sing N N 128 GLU OE2 HE2 sing N N 129 GLU OXT HXT sing N N 130 GLY N CA sing N N 131 GLY N H sing N N 132 GLY N H2 sing N N 133 GLY CA C sing N N 134 GLY CA HA2 sing N N 135 GLY CA HA3 sing N N 136 GLY C O doub N N 137 GLY C OXT sing N N 138 GLY OXT HXT sing N N 139 GOL C1 O1 sing N N 140 GOL C1 C2 sing N N 141 GOL C1 H11 sing N N 142 GOL C1 H12 sing N N 143 GOL O1 HO1 sing N N 144 GOL C2 O2 sing N N 145 GOL C2 C3 sing N N 146 GOL C2 H2 sing N N 147 GOL O2 HO2 sing N N 148 GOL C3 O3 sing N N 149 GOL C3 H31 sing N N 150 GOL C3 H32 sing N N 151 GOL O3 HO3 sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LDR CAK OAA doub N N 197 LDR CAD CAB doub Y N 198 LDR CAB CAF sing Y N 199 LDR CAB HAB sing N N 200 LDR CAE CAC doub Y N 201 LDR CAC CAG sing Y N 202 LDR CAC HAC sing N N 203 LDR CAD CAH sing Y N 204 LDR CAD HAD sing N N 205 LDR CAI CAE sing Y N 206 LDR CAE HAE sing N N 207 LDR CAF CAL doub Y N 208 LDR CAF HAF sing N N 209 LDR CAM CAG doub Y N 210 LDR CAG HAG sing N N 211 LDR CAH CAN doub Y N 212 LDR CAH HAH sing N N 213 LDR CAI CAO doub Y N 214 LDR CAI HAI sing N N 215 LDR CAL NAJ sing N N 216 LDR NAJ CAK sing N N 217 LDR NAJ HNAJ sing N N 218 LDR CAM CAK sing N N 219 LDR CAN CAL sing Y N 220 LDR CAO CAM sing Y N 221 LDR CAN CAO sing N N 222 LEU N CA sing N N 223 LEU N H sing N N 224 LEU N H2 sing N N 225 LEU CA C sing N N 226 LEU CA CB sing N N 227 LEU CA HA sing N N 228 LEU C O doub N N 229 LEU C OXT sing N N 230 LEU CB CG sing N N 231 LEU CB HB2 sing N N 232 LEU CB HB3 sing N N 233 LEU CG CD1 sing N N 234 LEU CG CD2 sing N N 235 LEU CG HG sing N N 236 LEU CD1 HD11 sing N N 237 LEU CD1 HD12 sing N N 238 LEU CD1 HD13 sing N N 239 LEU CD2 HD21 sing N N 240 LEU CD2 HD22 sing N N 241 LEU CD2 HD23 sing N N 242 LEU OXT HXT sing N N 243 LYS N CA sing N N 244 LYS N H sing N N 245 LYS N H2 sing N N 246 LYS CA C sing N N 247 LYS CA CB sing N N 248 LYS CA HA sing N N 249 LYS C O doub N N 250 LYS C OXT sing N N 251 LYS CB CG sing N N 252 LYS CB HB2 sing N N 253 LYS CB HB3 sing N N 254 LYS CG CD sing N N 255 LYS CG HG2 sing N N 256 LYS CG HG3 sing N N 257 LYS CD CE sing N N 258 LYS CD HD2 sing N N 259 LYS CD HD3 sing N N 260 LYS CE NZ sing N N 261 LYS CE HE2 sing N N 262 LYS CE HE3 sing N N 263 LYS NZ HZ1 sing N N 264 LYS NZ HZ2 sing N N 265 LYS NZ HZ3 sing N N 266 LYS OXT HXT sing N N 267 MET N CA sing N N 268 MET N H sing N N 269 MET N H2 sing N N 270 MET CA C sing N N 271 MET CA CB sing N N 272 MET CA HA sing N N 273 MET C O doub N N 274 MET C OXT sing N N 275 MET CB CG sing N N 276 MET CB HB2 sing N N 277 MET CB HB3 sing N N 278 MET CG SD sing N N 279 MET CG HG2 sing N N 280 MET CG HG3 sing N N 281 MET SD CE sing N N 282 MET CE HE1 sing N N 283 MET CE HE2 sing N N 284 MET CE HE3 sing N N 285 MET OXT HXT sing N N 286 PHE N CA sing N N 287 PHE N H sing N N 288 PHE N H2 sing N N 289 PHE CA C sing N N 290 PHE CA CB sing N N 291 PHE CA HA sing N N 292 PHE C O doub N N 293 PHE C OXT sing N N 294 PHE CB CG sing N N 295 PHE CB HB2 sing N N 296 PHE CB HB3 sing N N 297 PHE CG CD1 doub Y N 298 PHE CG CD2 sing Y N 299 PHE CD1 CE1 sing Y N 300 PHE CD1 HD1 sing N N 301 PHE CD2 CE2 doub Y N 302 PHE CD2 HD2 sing N N 303 PHE CE1 CZ doub Y N 304 PHE CE1 HE1 sing N N 305 PHE CE2 CZ sing Y N 306 PHE CE2 HE2 sing N N 307 PHE CZ HZ sing N N 308 PHE OXT HXT sing N N 309 PRO N CA sing N N 310 PRO N CD sing N N 311 PRO N H sing N N 312 PRO CA C sing N N 313 PRO CA CB sing N N 314 PRO CA HA sing N N 315 PRO C O doub N N 316 PRO C OXT sing N N 317 PRO CB CG sing N N 318 PRO CB HB2 sing N N 319 PRO CB HB3 sing N N 320 PRO CG CD sing N N 321 PRO CG HG2 sing N N 322 PRO CG HG3 sing N N 323 PRO CD HD2 sing N N 324 PRO CD HD3 sing N N 325 PRO OXT HXT sing N N 326 SER N CA sing N N 327 SER N H sing N N 328 SER N H2 sing N N 329 SER CA C sing N N 330 SER CA CB sing N N 331 SER CA HA sing N N 332 SER C O doub N N 333 SER C OXT sing N N 334 SER CB OG sing N N 335 SER CB HB2 sing N N 336 SER CB HB3 sing N N 337 SER OG HG sing N N 338 SER OXT HXT sing N N 339 THR N CA sing N N 340 THR N H sing N N 341 THR N H2 sing N N 342 THR CA C sing N N 343 THR CA CB sing N N 344 THR CA HA sing N N 345 THR C O doub N N 346 THR C OXT sing N N 347 THR CB OG1 sing N N 348 THR CB CG2 sing N N 349 THR CB HB sing N N 350 THR OG1 HG1 sing N N 351 THR CG2 HG21 sing N N 352 THR CG2 HG22 sing N N 353 THR CG2 HG23 sing N N 354 THR OXT HXT sing N N 355 TRP N CA sing N N 356 TRP N H sing N N 357 TRP N H2 sing N N 358 TRP CA C sing N N 359 TRP CA CB sing N N 360 TRP CA HA sing N N 361 TRP C O doub N N 362 TRP C OXT sing N N 363 TRP CB CG sing N N 364 TRP CB HB2 sing N N 365 TRP CB HB3 sing N N 366 TRP CG CD1 doub Y N 367 TRP CG CD2 sing Y N 368 TRP CD1 NE1 sing Y N 369 TRP CD1 HD1 sing N N 370 TRP CD2 CE2 doub Y N 371 TRP CD2 CE3 sing Y N 372 TRP NE1 CE2 sing Y N 373 TRP NE1 HE1 sing N N 374 TRP CE2 CZ2 sing Y N 375 TRP CE3 CZ3 doub Y N 376 TRP CE3 HE3 sing N N 377 TRP CZ2 CH2 doub Y N 378 TRP CZ2 HZ2 sing N N 379 TRP CZ3 CH2 sing Y N 380 TRP CZ3 HZ3 sing N N 381 TRP CH2 HH2 sing N N 382 TRP OXT HXT sing N N 383 TYR N CA sing N N 384 TYR N H sing N N 385 TYR N H2 sing N N 386 TYR CA C sing N N 387 TYR CA CB sing N N 388 TYR CA HA sing N N 389 TYR C O doub N N 390 TYR C OXT sing N N 391 TYR CB CG sing N N 392 TYR CB HB2 sing N N 393 TYR CB HB3 sing N N 394 TYR CG CD1 doub Y N 395 TYR CG CD2 sing Y N 396 TYR CD1 CE1 sing Y N 397 TYR CD1 HD1 sing N N 398 TYR CD2 CE2 doub Y N 399 TYR CD2 HD2 sing N N 400 TYR CE1 CZ doub Y N 401 TYR CE1 HE1 sing N N 402 TYR CE2 CZ sing Y N 403 TYR CE2 HE2 sing N N 404 TYR CZ OH sing N N 405 TYR OH HH sing N N 406 TYR OXT HXT sing N N 407 VAL N CA sing N N 408 VAL N H sing N N 409 VAL N H2 sing N N 410 VAL CA C sing N N 411 VAL CA CB sing N N 412 VAL CA HA sing N N 413 VAL C O doub N N 414 VAL C OXT sing N N 415 VAL CB CG1 sing N N 416 VAL CB CG2 sing N N 417 VAL CB HB sing N N 418 VAL CG1 HG11 sing N N 419 VAL CG1 HG12 sing N N 420 VAL CG1 HG13 sing N N 421 VAL CG2 HG21 sing N N 422 VAL CG2 HG22 sing N N 423 VAL CG2 HG23 sing N N 424 VAL OXT HXT sing N N 425 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Science and Technology (DST)-SERB' India ? 1 'Department of Biotechnology' India ? 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 METHOXYETHANE 2ME 4 'phenanthridin-6(5H)-one' LDR 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5IG6 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #