HEADER HYDROLASE 29-JUL-17 5Y3Q TITLE CRYSTAL STRUCTURE OF SARS CORONAVIRUS PAPAIN-LIKE PROTEASE CONJUGATED TITLE 2 WITH BETA-MERCAPTOETHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1541-1854; COMPND 5 SYNONYM: PP1A,ORF1A POLYPROTEIN; COMPND 6 EC: 3.4.19.12,3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SARS CORONAVIRUS; SOURCE 3 ORGANISM_COMMON: SARS-COV; SOURCE 4 ORGANISM_TAXID: 227859; SOURCE 5 GENE: 1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.H.LIN,C.Y.CHOU REVDAT 3 22-NOV-23 5Y3Q 1 REMARK REVDAT 2 17-JAN-18 5Y3Q 1 JRNL REVDAT 1 10-JAN-18 5Y3Q 0 JRNL AUTH M.H.LIN,D.C.MOSES,C.H.HSIEH,S.C.CHENG,Y.H.CHEN,C.Y.SUN, JRNL AUTH 2 C.Y.CHOU JRNL TITL DISULFIRAM CAN INHIBIT MERS AND SARS CORONAVIRUS PAPAIN-LIKE JRNL TITL 2 PROTEASES VIA DIFFERENT MODES JRNL REF ANTIVIRAL RES. V. 150 155 2017 JRNL REFN ISSN 1872-9096 JRNL PMID 29289665 JRNL DOI 10.1016/J.ANTIVIRAL.2017.12.015 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42759 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2266 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6082 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.1630 REMARK 3 BIN FREE R VALUE SET COUNT : 307 REMARK 3 BIN FREE R VALUE : 0.2010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2780 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2490 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3794 ; 1.258 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5822 ; 0.865 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 5.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;39.517 ;24.880 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;13.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.705 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3175 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1372 ; 1.110 ; 1.491 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1371 ; 1.106 ; 1.488 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1745 ; 1.485 ; 2.232 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1746 ; 1.484 ; 2.235 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1407 ; 1.219 ; 1.748 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1407 ; 1.219 ; 1.748 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2043 ; 1.513 ; 2.528 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3107 ; 2.930 ;18.837 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3108 ; 2.930 ;18.841 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5269 ; 1.204 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 173 ;21.895 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5327 ; 6.168 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Y3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 74.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, BIS-TRIS PROPANE/CITRIC ACID, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.70600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.63200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.70600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.63200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 532 O HOH A 754 2558 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 15 -55.77 -124.63 REMARK 500 LYS A 280 -117.38 -131.94 REMARK 500 LYS A 280 -117.38 -119.49 REMARK 500 THR A 309 -73.15 -132.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 794 DISTANCE = 6.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 72 OH REMARK 620 2 ALA A 132 O 104.5 REMARK 620 3 HOH A 723 O 104.2 115.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 115 OG REMARK 620 2 ILE A 286 O 151.2 REMARK 620 3 HOH A 517 O 102.2 103.7 REMARK 620 4 HOH A 531 O 111.8 93.0 56.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 116 O REMARK 620 2 SER A 116 O 1.8 REMARK 620 3 SER A 116 OG 70.5 70.9 REMARK 620 4 ASN A 263 OD1 103.2 104.6 49.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 190 SG REMARK 620 2 CYS A 193 SG 111.6 REMARK 620 3 CYS A 225 SG 112.0 105.7 REMARK 620 4 CYS A 227 SG 106.0 112.5 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 206 O REMARK 620 2 MET A 244 O 69.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 218 O REMARK 620 2 LEU A 235 O 111.7 REMARK 620 3 TYR A 311 OH 117.6 111.7 REMARK 620 4 THR A 313 OG1 124.2 90.3 97.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 DBREF 5Y3Q A 2 315 UNP P0C6U8 R1A_CVHSA 1541 1854 SEQADV 5Y3Q MET A 1 UNP P0C6U8 INITIATING METHIONINE SEQADV 5Y3Q LEU A 316 UNP P0C6U8 EXPRESSION TAG SEQADV 5Y3Q GLU A 317 UNP P0C6U8 EXPRESSION TAG SEQADV 5Y3Q HIS A 318 UNP P0C6U8 EXPRESSION TAG SEQADV 5Y3Q HIS A 319 UNP P0C6U8 EXPRESSION TAG SEQADV 5Y3Q HIS A 320 UNP P0C6U8 EXPRESSION TAG SEQADV 5Y3Q HIS A 321 UNP P0C6U8 EXPRESSION TAG SEQADV 5Y3Q HIS A 322 UNP P0C6U8 EXPRESSION TAG SEQADV 5Y3Q HIS A 323 UNP P0C6U8 EXPRESSION TAG SEQRES 1 A 323 MET GLU VAL LYS THR ILE LYS VAL PHE THR THR VAL ASP SEQRES 2 A 323 ASN THR ASN LEU HIS THR GLN LEU VAL ASP MET SER MET SEQRES 3 A 323 THR TYR GLY GLN GLN PHE GLY PRO THR TYR LEU ASP GLY SEQRES 4 A 323 ALA ASP VAL THR LYS ILE LYS PRO HIS VAL ASN HIS GLU SEQRES 5 A 323 GLY LYS THR PHE PHE VAL LEU PRO SER ASP ASP THR LEU SEQRES 6 A 323 ARG SER GLU ALA PHE GLU TYR TYR HIS THR LEU ASP GLU SEQRES 7 A 323 SER PHE LEU GLY ARG TYR MET SER ALA LEU ASN HIS THR SEQRES 8 A 323 LYS LYS TRP LYS PHE PRO GLN VAL GLY GLY LEU THR SER SEQRES 9 A 323 ILE LYS TRP ALA ASP ASN ASN CYS TYR LEU SER SER VAL SEQRES 10 A 323 LEU LEU ALA LEU GLN GLN LEU GLU VAL LYS PHE ASN ALA SEQRES 11 A 323 PRO ALA LEU GLN GLU ALA TYR TYR ARG ALA ARG ALA GLY SEQRES 12 A 323 ASP ALA ALA ASN PHE CYS ALA LEU ILE LEU ALA TYR SER SEQRES 13 A 323 ASN LYS THR VAL GLY GLU LEU GLY ASP VAL ARG GLU THR SEQRES 14 A 323 MET THR HIS LEU LEU GLN HIS ALA ASN LEU GLU SER ALA SEQRES 15 A 323 LYS ARG VAL LEU ASN VAL VAL CYS LYS HIS CYS GLY GLN SEQRES 16 A 323 LYS THR THR THR LEU THR GLY VAL GLU ALA VAL MET TYR SEQRES 17 A 323 MET GLY THR LEU SER TYR ASP ASN LEU LYS THR GLY VAL SEQRES 18 A 323 SER ILE PRO CYS VAL CYS GLY ARG ASP ALA THR GLN TYR SEQRES 19 A 323 LEU VAL GLN GLN GLU SER SER PHE VAL MET MET SER ALA SEQRES 20 A 323 PRO PRO ALA GLU TYR LYS LEU GLN GLN GLY THR PHE LEU SEQRES 21 A 323 CYS ALA ASN GLU TYR THR GLY ASN TYR GLN CYS GLY HIS SEQRES 22 A 323 TYR THR HIS ILE THR ALA LYS GLU THR LEU TYR ARG ILE SEQRES 23 A 323 ASP GLY ALA HIS LEU THR LYS MET SER GLU TYR LYS GLY SEQRES 24 A 323 PRO VAL THR ASP VAL PHE TYR LYS GLU THR SER TYR THR SEQRES 25 A 323 THR THR ILE LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 401 1 HET BME A 402 4 HET NA A 403 1 HET NA A 404 1 HET NA A 405 1 HET NA A 406 1 HET NA A 407 1 HET GOL A 408 6 HET GOL A 409 6 HETNAM ZN ZINC ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 BME C2 H6 O S FORMUL 4 NA 5(NA 1+) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *294(H2 O) HELIX 1 AA1 THR A 27 GLY A 33 1 7 HELIX 2 AA2 HIS A 48 GLU A 52 5 5 HELIX 3 AA3 ASP A 62 HIS A 74 1 13 HELIX 4 AA4 SER A 79 LYS A 92 1 14 HELIX 5 AA5 ASN A 111 GLN A 122 1 12 HELIX 6 AA6 ALA A 130 ALA A 142 1 13 HELIX 7 AA7 ALA A 145 ASN A 157 1 13 HELIX 8 AA8 ASP A 165 GLN A 175 1 11 HELIX 9 AA9 GLY A 202 VAL A 206 1 5 HELIX 10 AB1 SER A 213 GLY A 220 1 8 SHEET 1 AA1 5 HIS A 18 ASP A 23 0 SHEET 2 AA1 5 THR A 5 THR A 11 -1 N ILE A 6 O VAL A 22 SHEET 3 AA1 5 THR A 55 VAL A 58 1 O PHE A 56 N PHE A 9 SHEET 4 AA1 5 THR A 35 LEU A 37 -1 N TYR A 36 O PHE A 57 SHEET 5 AA1 5 ALA A 40 ASP A 41 -1 O ALA A 40 N LEU A 37 SHEET 1 AA2 2 GLN A 98 VAL A 99 0 SHEET 2 AA2 2 LEU A 102 THR A 103 -1 O LEU A 102 N VAL A 99 SHEET 1 AA3 4 GLY A 194 THR A 201 0 SHEET 2 AA3 4 LYS A 183 CYS A 190 -1 N VAL A 188 O LYS A 196 SHEET 3 AA3 4 ASP A 230 GLU A 239 -1 O VAL A 236 N VAL A 185 SHEET 4 AA3 4 VAL A 221 PRO A 224 -1 N ILE A 223 O ALA A 231 SHEET 1 AA4 4 GLY A 194 THR A 201 0 SHEET 2 AA4 4 LYS A 183 CYS A 190 -1 N VAL A 188 O LYS A 196 SHEET 3 AA4 4 ASP A 230 GLU A 239 -1 O VAL A 236 N VAL A 185 SHEET 4 AA4 4 SER A 310 THR A 312 -1 O TYR A 311 N GLN A 238 SHEET 1 AA5 7 MET A 207 MET A 209 0 SHEET 2 AA5 7 PHE A 242 LEU A 254 1 O SER A 246 N TYR A 208 SHEET 3 AA5 7 TYR A 297 LYS A 307 -1 O VAL A 304 N MET A 245 SHEET 4 AA5 7 CYS A 261 GLY A 267 -1 N CYS A 261 O PHE A 305 SHEET 5 AA5 7 GLY A 272 ALA A 279 -1 O ILE A 277 N ALA A 262 SHEET 6 AA5 7 LEU A 283 ASP A 287 -1 O ILE A 286 N HIS A 276 SHEET 7 AA5 7 HIS A 290 MET A 294 -1 O HIS A 290 N ASP A 287 SSBOND 1 CYS A 271 CYS A 271 1555 2558 2.02 LINK SG CYS A 112 S2 BME A 402 1555 1555 2.07 LINK OH TYR A 72 NA NA A 406 1555 1555 2.85 LINK OG SER A 115 NA NA A 405 1555 1555 2.92 LINK O ASER A 116 NA NA A 404 1555 1555 3.07 LINK O BSER A 116 NA NA A 404 1555 1555 3.17 LINK OG ASER A 116 NA NA A 404 1555 1555 2.65 LINK O ALA A 132 NA NA A 406 1555 1555 2.91 LINK SG CYS A 190 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 193 ZN ZN A 401 1555 1555 2.30 LINK O VAL A 206 NA NA A 407 1555 1555 2.84 LINK O LYS A 218 NA NA A 403 1555 1555 2.63 LINK SG CYS A 225 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 227 ZN ZN A 401 1555 1555 2.34 LINK O LEU A 235 NA NA A 403 1555 1555 2.68 LINK O MET A 244 NA NA A 407 1555 1555 2.89 LINK OD1BASN A 263 NA NA A 404 1555 1555 2.01 LINK O ILE A 286 NA NA A 405 1555 1555 2.92 LINK OH TYR A 311 NA NA A 403 1555 1555 2.70 LINK OG1 THR A 313 NA NA A 403 1555 1555 2.77 LINK NA NA A 405 O HOH A 517 1555 1555 2.68 LINK NA NA A 405 O HOH A 531 1555 1555 3.04 LINK NA NA A 406 O HOH A 723 1555 1555 2.81 SITE 1 AC1 4 CYS A 190 CYS A 193 CYS A 225 CYS A 227 SITE 1 AC2 6 TRP A 107 ASN A 110 CYS A 112 GLY A 272 SITE 2 AC2 6 HIS A 273 HOH A 695 SITE 1 AC3 4 LYS A 218 LEU A 235 TYR A 311 THR A 313 SITE 1 AC4 4 SER A 116 ALA A 262 ASN A 263 HIS A 276 SITE 1 AC5 6 SER A 115 LEU A 119 ILE A 286 GLY A 288 SITE 2 AC5 6 HOH A 517 HOH A 531 SITE 1 AC6 4 TYR A 72 ALA A 132 ASN A 147 HOH A 723 SITE 1 AC7 7 ARG A 184 VAL A 206 MET A 207 TYR A 208 SITE 2 AC7 7 VAL A 243 MET A 244 MET A 245 SITE 1 AC8 7 TYR A 252 LYS A 253 LEU A 254 GLN A 255 SITE 2 AC8 7 THR A 258 TYR A 306 HOH A 506 SITE 1 AC9 8 ASP A 165 PRO A 249 TYR A 265 TYR A 274 SITE 2 AC9 8 THR A 302 HOH A 520 HOH A 555 HOH A 576 CRYST1 151.412 33.264 90.677 90.00 125.01 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006604 0.000000 0.004626 0.00000 SCALE2 0.000000 0.030063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013464 0.00000