data_5YJ9 # _entry.id 5YJ9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.295 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5YJ9 WWPDB D_1300005383 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YJ9 _pdbx_database_status.recvd_initial_deposition_date 2017-10-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Okatsu, K.' 1 ? 'Sato, Y.' 2 ? 'Fukai, S.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 10382 _citation.page_last 10382 _citation.title 'Structural insights into ubiquitin phosphorylation by PINK1.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-018-28656-8 _citation.pdbx_database_id_PubMed 29991771 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Okatsu, K.' 1 primary 'Sato, Y.' 2 primary 'Yamano, K.' 3 primary 'Matsuda, N.' 4 primary 'Negishi, L.' 5 primary 'Takahashi, A.' 6 primary 'Yamagata, A.' 7 primary 'Goto-Ito, S.' 8 primary 'Mishima, M.' 9 primary 'Ito, Y.' 10 primary 'Oka, T.' 11 primary 'Tanaka, K.' 12 primary 'Fukai, S.' 13 # _cell.entry_id 5YJ9 _cell.length_a 138.028 _cell.length_b 59.790 _cell.length_c 50.822 _cell.angle_alpha 90.00 _cell.angle_beta 101.82 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YJ9 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine/threonine-protein kinase PINK1, mitochondrial-like Protein' 48198.523 1 ? 'S205D, S377D, T386E, T530E' ? ? 2 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 506.196 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPLGSESNPITLNDLSLGKPIAKGTNGVVYSAKVKDDETDDNKYPFALK(MSE)(MSE)FNYDIQDNS(MSE)EILKA (MSE)YRETVPAR(MSE)YYSNHDLNNWEIELANRRKHLPPHPNIVAIFSVFTDLIQELEGSKDLYPAALPPRLHPEGEG RN(MSE)SLFLL(MSE)KRYDCNLQSFLSTAPSTRTSLLLLAQLLEGVAH(MSE)TAHGIAHRDLKSDNLLLDTSEPESP ILVISDFGCCLADKTNGLSLPYTDYE(MSE)DKGGNEAL(MSE)APEIICQKPGTFSVLNYSKADLWAVGAIAYEIFNCH NPFYGPSRLKNFNYKEGDLPKLPDEVPTVIQALVANLLKRNPNKRLDPEVAANVCQLFLWAPSTWLKPGLKVPTSGEILQ WLLSLTTKVLCEGKINNKSFGEKFERNWRRTYPEYLLISSFLCRAKLANVRNALHWIQENLPELD ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSESNPITLNDLSLGKPIAKGTNGVVYSAKVKDDETDDNKYPFALKMMFNYDIQDNSMEILKAMYRETVPARMYYSN HDLNNWEIELANRRKHLPPHPNIVAIFSVFTDLIQELEGSKDLYPAALPPRLHPEGEGRNMSLFLLMKRYDCNLQSFLST APSTRTSLLLLAQLLEGVAHMTAHGIAHRDLKSDNLLLDTSEPESPILVISDFGCCLADKTNGLSLPYTDYEMDKGGNEA LMAPEIICQKPGTFSVLNYSKADLWAVGAIAYEIFNCHNPFYGPSRLKNFNYKEGDLPKLPDEVPTVIQALVANLLKRNP NKRLDPEVAANVCQLFLWAPSTWLKPGLKVPTSGEILQWLLSLTTKVLCEGKINNKSFGEKFERNWRRTYPEYLLISSFL CRAKLANVRNALHWIQENLPELD ; _entity_poly.pdbx_strand_id D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLU n 1 7 SER n 1 8 ASN n 1 9 PRO n 1 10 ILE n 1 11 THR n 1 12 LEU n 1 13 ASN n 1 14 ASP n 1 15 LEU n 1 16 SER n 1 17 LEU n 1 18 GLY n 1 19 LYS n 1 20 PRO n 1 21 ILE n 1 22 ALA n 1 23 LYS n 1 24 GLY n 1 25 THR n 1 26 ASN n 1 27 GLY n 1 28 VAL n 1 29 VAL n 1 30 TYR n 1 31 SER n 1 32 ALA n 1 33 LYS n 1 34 VAL n 1 35 LYS n 1 36 ASP n 1 37 ASP n 1 38 GLU n 1 39 THR n 1 40 ASP n 1 41 ASP n 1 42 ASN n 1 43 LYS n 1 44 TYR n 1 45 PRO n 1 46 PHE n 1 47 ALA n 1 48 LEU n 1 49 LYS n 1 50 MSE n 1 51 MSE n 1 52 PHE n 1 53 ASN n 1 54 TYR n 1 55 ASP n 1 56 ILE n 1 57 GLN n 1 58 ASP n 1 59 ASN n 1 60 SER n 1 61 MSE n 1 62 GLU n 1 63 ILE n 1 64 LEU n 1 65 LYS n 1 66 ALA n 1 67 MSE n 1 68 TYR n 1 69 ARG n 1 70 GLU n 1 71 THR n 1 72 VAL n 1 73 PRO n 1 74 ALA n 1 75 ARG n 1 76 MSE n 1 77 TYR n 1 78 TYR n 1 79 SER n 1 80 ASN n 1 81 HIS n 1 82 ASP n 1 83 LEU n 1 84 ASN n 1 85 ASN n 1 86 TRP n 1 87 GLU n 1 88 ILE n 1 89 GLU n 1 90 LEU n 1 91 ALA n 1 92 ASN n 1 93 ARG n 1 94 ARG n 1 95 LYS n 1 96 HIS n 1 97 LEU n 1 98 PRO n 1 99 PRO n 1 100 HIS n 1 101 PRO n 1 102 ASN n 1 103 ILE n 1 104 VAL n 1 105 ALA n 1 106 ILE n 1 107 PHE n 1 108 SER n 1 109 VAL n 1 110 PHE n 1 111 THR n 1 112 ASP n 1 113 LEU n 1 114 ILE n 1 115 GLN n 1 116 GLU n 1 117 LEU n 1 118 GLU n 1 119 GLY n 1 120 SER n 1 121 LYS n 1 122 ASP n 1 123 LEU n 1 124 TYR n 1 125 PRO n 1 126 ALA n 1 127 ALA n 1 128 LEU n 1 129 PRO n 1 130 PRO n 1 131 ARG n 1 132 LEU n 1 133 HIS n 1 134 PRO n 1 135 GLU n 1 136 GLY n 1 137 GLU n 1 138 GLY n 1 139 ARG n 1 140 ASN n 1 141 MSE n 1 142 SER n 1 143 LEU n 1 144 PHE n 1 145 LEU n 1 146 LEU n 1 147 MSE n 1 148 LYS n 1 149 ARG n 1 150 TYR n 1 151 ASP n 1 152 CYS n 1 153 ASN n 1 154 LEU n 1 155 GLN n 1 156 SER n 1 157 PHE n 1 158 LEU n 1 159 SER n 1 160 THR n 1 161 ALA n 1 162 PRO n 1 163 SER n 1 164 THR n 1 165 ARG n 1 166 THR n 1 167 SER n 1 168 LEU n 1 169 LEU n 1 170 LEU n 1 171 LEU n 1 172 ALA n 1 173 GLN n 1 174 LEU n 1 175 LEU n 1 176 GLU n 1 177 GLY n 1 178 VAL n 1 179 ALA n 1 180 HIS n 1 181 MSE n 1 182 THR n 1 183 ALA n 1 184 HIS n 1 185 GLY n 1 186 ILE n 1 187 ALA n 1 188 HIS n 1 189 ARG n 1 190 ASP n 1 191 LEU n 1 192 LYS n 1 193 SER n 1 194 ASP n 1 195 ASN n 1 196 LEU n 1 197 LEU n 1 198 LEU n 1 199 ASP n 1 200 THR n 1 201 SER n 1 202 GLU n 1 203 PRO n 1 204 GLU n 1 205 SER n 1 206 PRO n 1 207 ILE n 1 208 LEU n 1 209 VAL n 1 210 ILE n 1 211 SER n 1 212 ASP n 1 213 PHE n 1 214 GLY n 1 215 CYS n 1 216 CYS n 1 217 LEU n 1 218 ALA n 1 219 ASP n 1 220 LYS n 1 221 THR n 1 222 ASN n 1 223 GLY n 1 224 LEU n 1 225 SER n 1 226 LEU n 1 227 PRO n 1 228 TYR n 1 229 THR n 1 230 ASP n 1 231 TYR n 1 232 GLU n 1 233 MSE n 1 234 ASP n 1 235 LYS n 1 236 GLY n 1 237 GLY n 1 238 ASN n 1 239 GLU n 1 240 ALA n 1 241 LEU n 1 242 MSE n 1 243 ALA n 1 244 PRO n 1 245 GLU n 1 246 ILE n 1 247 ILE n 1 248 CYS n 1 249 GLN n 1 250 LYS n 1 251 PRO n 1 252 GLY n 1 253 THR n 1 254 PHE n 1 255 SER n 1 256 VAL n 1 257 LEU n 1 258 ASN n 1 259 TYR n 1 260 SER n 1 261 LYS n 1 262 ALA n 1 263 ASP n 1 264 LEU n 1 265 TRP n 1 266 ALA n 1 267 VAL n 1 268 GLY n 1 269 ALA n 1 270 ILE n 1 271 ALA n 1 272 TYR n 1 273 GLU n 1 274 ILE n 1 275 PHE n 1 276 ASN n 1 277 CYS n 1 278 HIS n 1 279 ASN n 1 280 PRO n 1 281 PHE n 1 282 TYR n 1 283 GLY n 1 284 PRO n 1 285 SER n 1 286 ARG n 1 287 LEU n 1 288 LYS n 1 289 ASN n 1 290 PHE n 1 291 ASN n 1 292 TYR n 1 293 LYS n 1 294 GLU n 1 295 GLY n 1 296 ASP n 1 297 LEU n 1 298 PRO n 1 299 LYS n 1 300 LEU n 1 301 PRO n 1 302 ASP n 1 303 GLU n 1 304 VAL n 1 305 PRO n 1 306 THR n 1 307 VAL n 1 308 ILE n 1 309 GLN n 1 310 ALA n 1 311 LEU n 1 312 VAL n 1 313 ALA n 1 314 ASN n 1 315 LEU n 1 316 LEU n 1 317 LYS n 1 318 ARG n 1 319 ASN n 1 320 PRO n 1 321 ASN n 1 322 LYS n 1 323 ARG n 1 324 LEU n 1 325 ASP n 1 326 PRO n 1 327 GLU n 1 328 VAL n 1 329 ALA n 1 330 ALA n 1 331 ASN n 1 332 VAL n 1 333 CYS n 1 334 GLN n 1 335 LEU n 1 336 PHE n 1 337 LEU n 1 338 TRP n 1 339 ALA n 1 340 PRO n 1 341 SER n 1 342 THR n 1 343 TRP n 1 344 LEU n 1 345 LYS n 1 346 PRO n 1 347 GLY n 1 348 LEU n 1 349 LYS n 1 350 VAL n 1 351 PRO n 1 352 THR n 1 353 SER n 1 354 GLY n 1 355 GLU n 1 356 ILE n 1 357 LEU n 1 358 GLN n 1 359 TRP n 1 360 LEU n 1 361 LEU n 1 362 SER n 1 363 LEU n 1 364 THR n 1 365 THR n 1 366 LYS n 1 367 VAL n 1 368 LEU n 1 369 CYS n 1 370 GLU n 1 371 GLY n 1 372 LYS n 1 373 ILE n 1 374 ASN n 1 375 ASN n 1 376 LYS n 1 377 SER n 1 378 PHE n 1 379 GLY n 1 380 GLU n 1 381 LYS n 1 382 PHE n 1 383 GLU n 1 384 ARG n 1 385 ASN n 1 386 TRP n 1 387 ARG n 1 388 ARG n 1 389 THR n 1 390 TYR n 1 391 PRO n 1 392 GLU n 1 393 TYR n 1 394 LEU n 1 395 LEU n 1 396 ILE n 1 397 SER n 1 398 SER n 1 399 PHE n 1 400 LEU n 1 401 CYS n 1 402 ARG n 1 403 ALA n 1 404 LYS n 1 405 LEU n 1 406 ALA n 1 407 ASN n 1 408 VAL n 1 409 ARG n 1 410 ASN n 1 411 ALA n 1 412 LEU n 1 413 HIS n 1 414 TRP n 1 415 ILE n 1 416 GLN n 1 417 GLU n 1 418 ASN n 1 419 LEU n 1 420 PRO n 1 421 GLU n 1 422 LEU n 1 423 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 423 _entity_src_gen.gene_src_common_name 'Red flour beetle' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TcasGA2_TC013202 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Tribolium castaneum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7070 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D6WMX4_TRICA _struct_ref.pdbx_db_accession D6WMX4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ESNPITLNDLSLGKPIAKGTNGVVYSAKVKDDETDDNKYPFALKMMFNYDIQSNSMEILKAMYRETVPARMYYSNHDLNN WEIELANRRKHLPPHPNIVAIFSVFTDLIQELEGSKDLYPAALPPRLHPEGEGRNMSLFLLMKRYDCNLQSFLSTAPSTR TSLLLLAQLLEGVAHMTAHGIAHRDLKSDNLLLDTSEPESPILVISDFGCCLADKTNGLSLPYTSYEMDKGGNTALMAPE IICQKPGTFSVLNYSKADLWAVGAIAYEIFNCHNPFYGPSRLKNFNYKEGDLPKLPDEVPTVIQALVANLLKRNPNKRLD PEVAANVCQLFLWAPSTWLKPGLKVPTSGEILQWLLSLTTKVLCEGKINNKSFGEKFTRNWRRTYPEYLLISSFLCRAKL ANVRNALHWIQENLPELD ; _struct_ref.pdbx_align_begin 153 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5YJ9 _struct_ref_seq.pdbx_strand_id D _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 423 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D6WMX4 _struct_ref_seq.db_align_beg 153 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 570 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 153 _struct_ref_seq.pdbx_auth_seq_align_end 570 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YJ9 GLY D 1 ? UNP D6WMX4 ? ? 'expression tag' 148 1 1 5YJ9 PRO D 2 ? UNP D6WMX4 ? ? 'expression tag' 149 2 1 5YJ9 LEU D 3 ? UNP D6WMX4 ? ? 'expression tag' 150 3 1 5YJ9 GLY D 4 ? UNP D6WMX4 ? ? 'expression tag' 151 4 1 5YJ9 SER D 5 ? UNP D6WMX4 ? ? 'expression tag' 152 5 1 5YJ9 ASP D 58 ? UNP D6WMX4 SER 205 'engineered mutation' 205 6 1 5YJ9 ASP D 230 ? UNP D6WMX4 SER 377 'engineered mutation' 377 7 1 5YJ9 GLU D 239 ? UNP D6WMX4 THR 386 'engineered mutation' 386 8 1 5YJ9 GLU D 383 ? UNP D6WMX4 THR 530 'engineered mutation' 530 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ANP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' ? 'C10 H17 N6 O12 P3' 506.196 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YJ9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'calcium acetate, PEG 400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-07-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YJ9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13138 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.53 _reflns_shell.d_res_low 2.57 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.95 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 94.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.6 _reflns_shell.pdbx_Rsym_value 0.545 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YJ9 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12625 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.48 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.744 _refine.ls_d_res_high 2.530 _refine.ls_percent_reflns_obs 92.22 _refine.ls_R_factor_obs 0.2297 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2289 _refine.ls_R_factor_R_free 0.2434 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.17 _refine.ls_number_reflns_R_free 653 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.30 _refine.pdbx_overall_phase_error 28.45 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2733 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 2769 _refine_hist.d_res_high 2.530 _refine_hist.d_res_low 49.744 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 2834 'X-RAY DIFFRACTION' ? f_angle_d 1.012 ? ? 3854 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.537 ? ? 1050 'X-RAY DIFFRACTION' ? f_chiral_restr 0.068 ? ? 434 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 481 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.5301 2.7254 2139 0.2951 85.00 0.3517 . . 145 . . 'X-RAY DIFFRACTION' . 2.7254 2.9997 2434 0.2678 93.00 0.2629 . . 113 . . 'X-RAY DIFFRACTION' . 2.9997 3.4336 2453 0.2344 94.00 0.2801 . . 114 . . 'X-RAY DIFFRACTION' . 3.4336 4.3256 2457 0.2146 95.00 0.2193 . . 152 . . 'X-RAY DIFFRACTION' . 4.3256 49.7538 2489 0.2162 94.00 0.2252 . . 129 . . # _struct.entry_id 5YJ9 _struct.title 'Crystal structure of Tribolium castaneum PINK1 kinase domain in complex with AMP-PNP' _struct.pdbx_descriptor 'Serine/threonine-protein kinase PINK1, mitochondrial-like Protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YJ9 _struct_keywords.text 'protein kinase, mitochondria, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 60 ? GLU A 70 ? SER D 207 GLU D 217 1 ? 11 HELX_P HELX_P2 AA2 LEU A 154 ? LEU A 158 ? LEU D 301 LEU D 305 1 ? 5 HELX_P HELX_P3 AA3 SER A 163 ? HIS A 184 ? SER D 310 HIS D 331 1 ? 22 HELX_P HELX_P4 AA4 ALA A 243 ? CYS A 248 ? ALA D 390 CYS D 395 1 ? 6 HELX_P HELX_P5 AA5 LYS A 261 ? PHE A 275 ? LYS D 408 PHE D 422 1 ? 15 HELX_P HELX_P6 AA6 LYS A 293 ? LEU A 297 ? LYS D 440 LEU D 444 5 ? 5 HELX_P HELX_P7 AA7 PRO A 305 ? LEU A 316 ? PRO D 452 LEU D 463 1 ? 12 HELX_P HELX_P8 AA8 ASN A 319 ? ARG A 323 ? ASN D 466 ARG D 470 5 ? 5 HELX_P HELX_P9 AA9 ASP A 325 ? ALA A 339 ? ASP D 472 ALA D 486 1 ? 15 HELX_P HELX_P10 AB1 PRO A 340 ? LYS A 345 ? PRO D 487 LYS D 492 5 ? 6 HELX_P HELX_P11 AB2 THR A 352 ? CYS A 369 ? THR D 499 CYS D 516 1 ? 18 HELX_P HELX_P12 AB3 THR A 389 ? ARG A 402 ? THR D 536 ARG D 549 1 ? 14 HELX_P HELX_P13 AB4 LYS A 404 ? ASN A 418 ? LYS D 551 ASN D 565 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 369 SG ? ? ? 1_555 A CYS 401 SG ? ? D CYS 516 D CYS 548 2_655 ? ? ? ? ? ? ? 2.031 ? covale1 covale both ? A LYS 49 C ? ? ? 1_555 A MSE 50 N ? ? D LYS 196 D MSE 197 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale both ? A MSE 50 C ? ? ? 1_555 A MSE 51 N ? ? D MSE 197 D MSE 198 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale both ? A MSE 51 C ? ? ? 1_555 A PHE 52 N ? ? D MSE 198 D PHE 199 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale both ? A SER 60 C ? ? ? 1_555 A MSE 61 N ? ? D SER 207 D MSE 208 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale both ? A MSE 61 C ? ? ? 1_555 A GLU 62 N ? ? D MSE 208 D GLU 209 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale both ? A ALA 66 C ? ? ? 1_555 A MSE 67 N ? ? D ALA 213 D MSE 214 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale both ? A MSE 67 C ? ? ? 1_555 A TYR 68 N ? ? D MSE 214 D TYR 215 1_555 ? ? ? ? ? ? ? 1.330 ? metalc1 metalc ? ? A GLU 70 OE2 ? ? ? 1_555 C MG . MG ? ? D GLU 217 D MG 602 1_555 ? ? ? ? ? ? ? 2.886 ? covale8 covale both ? A ARG 75 C ? ? ? 1_555 A MSE 76 N ? ? D ARG 222 D MSE 223 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale both ? A MSE 76 C ? ? ? 1_555 A TYR 77 N ? ? D MSE 223 D TYR 224 1_555 ? ? ? ? ? ? ? 1.328 ? covale10 covale both ? A MSE 141 C ? ? ? 1_555 A SER 142 N ? ? D MSE 288 D SER 289 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale both ? A LEU 146 C ? ? ? 1_555 A MSE 147 N ? ? D LEU 293 D MSE 294 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale both ? A MSE 147 C ? ? ? 1_555 A LYS 148 N ? ? D MSE 294 D LYS 295 1_555 ? ? ? ? ? ? ? 1.326 ? covale13 covale both ? A HIS 180 C ? ? ? 1_555 A MSE 181 N ? ? D HIS 327 D MSE 328 1_555 ? ? ? ? ? ? ? 1.329 ? covale14 covale both ? A MSE 181 C ? ? ? 1_555 A THR 182 N ? ? D MSE 328 D THR 329 1_555 ? ? ? ? ? ? ? 1.332 ? metalc2 metalc ? ? A ASN 195 OD1 ? ? ? 1_555 D MG . MG ? ? D ASN 342 D MG 603 1_555 ? ? ? ? ? ? ? 2.269 ? metalc3 metalc ? ? A ASP 212 OD1 ? ? ? 1_555 C MG . MG ? ? D ASP 359 D MG 602 1_555 ? ? ? ? ? ? ? 2.585 ? metalc4 metalc ? ? A ASP 212 OD2 ? ? ? 1_555 C MG . MG ? ? D ASP 359 D MG 602 1_555 ? ? ? ? ? ? ? 2.470 ? metalc5 metalc ? ? A ASP 212 OD2 ? ? ? 1_555 D MG . MG ? ? D ASP 359 D MG 603 1_555 ? ? ? ? ? ? ? 2.238 ? covale15 covale both ? A GLU 232 C ? ? ? 1_555 A MSE 233 N ? ? D GLU 379 D MSE 380 1_555 ? ? ? ? ? ? ? 1.323 ? covale16 covale both ? A MSE 233 C ? ? ? 1_555 A ASP 234 N ? ? D MSE 380 D ASP 381 1_555 ? ? ? ? ? ? ? 1.325 ? covale17 covale both ? A LEU 241 C ? ? ? 1_555 A MSE 242 N ? ? D LEU 388 D MSE 389 1_555 ? ? ? ? ? ? ? 1.325 ? covale18 covale both ? A MSE 242 C ? ? ? 1_555 A ALA 243 N ? ? D MSE 389 D ALA 390 1_555 ? ? ? ? ? ? ? 1.329 ? metalc6 metalc ? ? B ANP . O1G ? ? ? 1_555 D MG . MG ? ? D ANP 601 D MG 603 1_555 ? ? ? ? ? ? ? 2.561 ? metalc7 metalc ? ? B ANP . O2B ? ? ? 1_555 C MG . MG ? ? D ANP 601 D MG 602 1_555 ? ? ? ? ? ? ? 2.139 ? metalc8 metalc ? ? B ANP . O1A ? ? ? 1_555 D MG . MG ? ? D ANP 601 D MG 603 1_555 ? ? ? ? ? ? ? 2.088 ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? D MG 602 D HOH 703 1_555 ? ? ? ? ? ? ? 2.012 ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? D MG 603 D HOH 701 1_555 ? ? ? ? ? ? ? 2.222 ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? D MG 603 D HOH 702 1_555 ? ? ? ? ? ? ? 2.060 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PRO A 20 ? LYS A 23 ? PRO D 167 LYS D 170 AA1 2 GLY A 27 ? ALA A 32 ? GLY D 174 ALA D 179 AA1 3 PHE A 46 ? PHE A 52 ? PHE D 193 PHE D 199 AA1 4 SER A 142 ? LYS A 148 ? SER D 289 LYS D 295 AA1 5 ILE A 106 ? PHE A 110 ? ILE D 253 PHE D 257 AA2 1 CYS A 152 ? ASN A 153 ? CYS D 299 ASN D 300 AA2 2 LEU A 196 ? ASP A 199 ? LEU D 343 ASP D 346 AA2 3 ILE A 207 ? ILE A 210 ? ILE D 354 ILE D 357 AA3 1 SER A 225 ? PRO A 227 ? SER D 372 PRO D 374 AA3 2 VAL A 256 ? ASN A 258 ? VAL D 403 ASN D 405 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 21 ? N ILE D 168 O VAL A 29 ? O VAL D 176 AA1 2 3 N TYR A 30 ? N TYR D 177 O LEU A 48 ? O LEU D 195 AA1 3 4 N LYS A 49 ? N LYS D 196 O LEU A 145 ? O LEU D 292 AA1 4 5 O PHE A 144 ? O PHE D 291 N PHE A 110 ? N PHE D 257 AA2 1 2 N CYS A 152 ? N CYS D 299 O LEU A 198 ? O LEU D 345 AA2 2 3 N LEU A 197 ? N LEU D 344 O VAL A 209 ? O VAL D 356 AA3 1 2 N LEU A 226 ? N LEU D 373 O LEU A 257 ? O LEU D 404 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D ANP 601 ? 18 'binding site for residue ANP D 601' AC2 Software D MG 602 ? 4 'binding site for residue MG D 602' AC3 Software D MG 603 ? 5 'binding site for residue MG D 603' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 ALA A 22 ? ALA D 169 . ? 1_555 ? 2 AC1 18 ALA A 47 ? ALA D 194 . ? 1_555 ? 3 AC1 18 LYS A 49 ? LYS D 196 . ? 1_555 ? 4 AC1 18 GLU A 70 ? GLU D 217 . ? 1_555 ? 5 AC1 18 MSE A 147 ? MSE D 294 . ? 1_555 ? 6 AC1 18 LYS A 148 ? LYS D 295 . ? 1_555 ? 7 AC1 18 TYR A 150 ? TYR D 297 . ? 1_555 ? 8 AC1 18 ASN A 153 ? ASN D 300 . ? 1_555 ? 9 AC1 18 ASP A 194 ? ASP D 341 . ? 1_555 ? 10 AC1 18 ASN A 195 ? ASN D 342 . ? 1_555 ? 11 AC1 18 LEU A 197 ? LEU D 344 . ? 1_555 ? 12 AC1 18 ASP A 212 ? ASP D 359 . ? 1_555 ? 13 AC1 18 LYS A 299 ? LYS D 446 . ? 4_555 ? 14 AC1 18 ASP A 302 ? ASP D 449 . ? 4_555 ? 15 AC1 18 MG C . ? MG D 602 . ? 1_555 ? 16 AC1 18 MG D . ? MG D 603 . ? 1_555 ? 17 AC1 18 HOH E . ? HOH D 701 . ? 1_555 ? 18 AC1 18 HOH E . ? HOH D 702 . ? 1_555 ? 19 AC2 4 GLU A 70 ? GLU D 217 . ? 1_555 ? 20 AC2 4 ASP A 212 ? ASP D 359 . ? 1_555 ? 21 AC2 4 ANP B . ? ANP D 601 . ? 1_555 ? 22 AC2 4 HOH E . ? HOH D 703 . ? 1_555 ? 23 AC3 5 ASN A 195 ? ASN D 342 . ? 1_555 ? 24 AC3 5 ASP A 212 ? ASP D 359 . ? 1_555 ? 25 AC3 5 ANP B . ? ANP D 601 . ? 1_555 ? 26 AC3 5 HOH E . ? HOH D 701 . ? 1_555 ? 27 AC3 5 HOH E . ? HOH D 702 . ? 1_555 ? # _atom_sites.entry_id 5YJ9 _atom_sites.fract_transf_matrix[1][1] 0.007245 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001516 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016725 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020103 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 148 ? ? ? D . n A 1 2 PRO 2 149 ? ? ? D . n A 1 3 LEU 3 150 ? ? ? D . n A 1 4 GLY 4 151 ? ? ? D . n A 1 5 SER 5 152 ? ? ? D . n A 1 6 GLU 6 153 ? ? ? D . n A 1 7 SER 7 154 ? ? ? D . n A 1 8 ASN 8 155 ? ? ? D . n A 1 9 PRO 9 156 ? ? ? D . n A 1 10 ILE 10 157 ? ? ? D . n A 1 11 THR 11 158 ? ? ? D . n A 1 12 LEU 12 159 ? ? ? D . n A 1 13 ASN 13 160 ? ? ? D . n A 1 14 ASP 14 161 ? ? ? D . n A 1 15 LEU 15 162 ? ? ? D . n A 1 16 SER 16 163 ? ? ? D . n A 1 17 LEU 17 164 ? ? ? D . n A 1 18 GLY 18 165 ? ? ? D . n A 1 19 LYS 19 166 166 LYS LYS D . n A 1 20 PRO 20 167 167 PRO PRO D . n A 1 21 ILE 21 168 168 ILE ILE D . n A 1 22 ALA 22 169 169 ALA ALA D . n A 1 23 LYS 23 170 170 LYS LYS D . n A 1 24 GLY 24 171 171 GLY GLY D . n A 1 25 THR 25 172 172 THR THR D . n A 1 26 ASN 26 173 173 ASN ASN D . n A 1 27 GLY 27 174 174 GLY GLY D . n A 1 28 VAL 28 175 175 VAL VAL D . n A 1 29 VAL 29 176 176 VAL VAL D . n A 1 30 TYR 30 177 177 TYR TYR D . n A 1 31 SER 31 178 178 SER SER D . n A 1 32 ALA 32 179 179 ALA ALA D . n A 1 33 LYS 33 180 180 LYS LYS D . n A 1 34 VAL 34 181 181 VAL VAL D . n A 1 35 LYS 35 182 182 LYS LYS D . n A 1 36 ASP 36 183 183 ASP ASP D . n A 1 37 ASP 37 184 ? ? ? D . n A 1 38 GLU 38 185 ? ? ? D . n A 1 39 THR 39 186 ? ? ? D . n A 1 40 ASP 40 187 ? ? ? D . n A 1 41 ASP 41 188 ? ? ? D . n A 1 42 ASN 42 189 ? ? ? D . n A 1 43 LYS 43 190 ? ? ? D . n A 1 44 TYR 44 191 191 TYR TYR D . n A 1 45 PRO 45 192 192 PRO PRO D . n A 1 46 PHE 46 193 193 PHE PHE D . n A 1 47 ALA 47 194 194 ALA ALA D . n A 1 48 LEU 48 195 195 LEU LEU D . n A 1 49 LYS 49 196 196 LYS LYS D . n A 1 50 MSE 50 197 197 MSE MSE D . n A 1 51 MSE 51 198 198 MSE MSE D . n A 1 52 PHE 52 199 199 PHE PHE D . n A 1 53 ASN 53 200 200 ASN ASN D . n A 1 54 TYR 54 201 201 TYR TYR D . n A 1 55 ASP 55 202 202 ASP ASP D . n A 1 56 ILE 56 203 203 ILE ILE D . n A 1 57 GLN 57 204 204 GLN GLN D . n A 1 58 ASP 58 205 205 ASP ASP D . n A 1 59 ASN 59 206 206 ASN ASN D . n A 1 60 SER 60 207 207 SER SER D . n A 1 61 MSE 61 208 208 MSE MSE D . n A 1 62 GLU 62 209 209 GLU GLU D . n A 1 63 ILE 63 210 210 ILE ILE D . n A 1 64 LEU 64 211 211 LEU LEU D . n A 1 65 LYS 65 212 212 LYS LYS D . n A 1 66 ALA 66 213 213 ALA ALA D . n A 1 67 MSE 67 214 214 MSE MSE D . n A 1 68 TYR 68 215 215 TYR TYR D . n A 1 69 ARG 69 216 216 ARG ARG D . n A 1 70 GLU 70 217 217 GLU GLU D . n A 1 71 THR 71 218 218 THR THR D . n A 1 72 VAL 72 219 219 VAL VAL D . n A 1 73 PRO 73 220 220 PRO PRO D . n A 1 74 ALA 74 221 221 ALA ALA D . n A 1 75 ARG 75 222 222 ARG ARG D . n A 1 76 MSE 76 223 223 MSE MSE D . n A 1 77 TYR 77 224 224 TYR TYR D . n A 1 78 TYR 78 225 225 TYR TYR D . n A 1 79 SER 79 226 ? ? ? D . n A 1 80 ASN 80 227 ? ? ? D . n A 1 81 HIS 81 228 ? ? ? D . n A 1 82 ASP 82 229 ? ? ? D . n A 1 83 LEU 83 230 ? ? ? D . n A 1 84 ASN 84 231 ? ? ? D . n A 1 85 ASN 85 232 ? ? ? D . n A 1 86 TRP 86 233 ? ? ? D . n A 1 87 GLU 87 234 ? ? ? D . n A 1 88 ILE 88 235 ? ? ? D . n A 1 89 GLU 89 236 ? ? ? D . n A 1 90 LEU 90 237 ? ? ? D . n A 1 91 ALA 91 238 ? ? ? D . n A 1 92 ASN 92 239 ? ? ? D . n A 1 93 ARG 93 240 ? ? ? D . n A 1 94 ARG 94 241 ? ? ? D . n A 1 95 LYS 95 242 242 LYS LYS D . n A 1 96 HIS 96 243 243 HIS HIS D . n A 1 97 LEU 97 244 244 LEU LEU D . n A 1 98 PRO 98 245 245 PRO PRO D . n A 1 99 PRO 99 246 246 PRO PRO D . n A 1 100 HIS 100 247 247 HIS HIS D . n A 1 101 PRO 101 248 248 PRO PRO D . n A 1 102 ASN 102 249 249 ASN ASN D . n A 1 103 ILE 103 250 250 ILE ILE D . n A 1 104 VAL 104 251 251 VAL VAL D . n A 1 105 ALA 105 252 252 ALA ALA D . n A 1 106 ILE 106 253 253 ILE ILE D . n A 1 107 PHE 107 254 254 PHE PHE D . n A 1 108 SER 108 255 255 SER SER D . n A 1 109 VAL 109 256 256 VAL VAL D . n A 1 110 PHE 110 257 257 PHE PHE D . n A 1 111 THR 111 258 258 THR THR D . n A 1 112 ASP 112 259 ? ? ? D . n A 1 113 LEU 113 260 ? ? ? D . n A 1 114 ILE 114 261 ? ? ? D . n A 1 115 GLN 115 262 ? ? ? D . n A 1 116 GLU 116 263 ? ? ? D . n A 1 117 LEU 117 264 ? ? ? D . n A 1 118 GLU 118 265 ? ? ? D . n A 1 119 GLY 119 266 ? ? ? D . n A 1 120 SER 120 267 ? ? ? D . n A 1 121 LYS 121 268 ? ? ? D . n A 1 122 ASP 122 269 ? ? ? D . n A 1 123 LEU 123 270 ? ? ? D . n A 1 124 TYR 124 271 ? ? ? D . n A 1 125 PRO 125 272 ? ? ? D . n A 1 126 ALA 126 273 ? ? ? D . n A 1 127 ALA 127 274 ? ? ? D . n A 1 128 LEU 128 275 ? ? ? D . n A 1 129 PRO 129 276 ? ? ? D . n A 1 130 PRO 130 277 ? ? ? D . n A 1 131 ARG 131 278 ? ? ? D . n A 1 132 LEU 132 279 ? ? ? D . n A 1 133 HIS 133 280 ? ? ? D . n A 1 134 PRO 134 281 ? ? ? D . n A 1 135 GLU 135 282 ? ? ? D . n A 1 136 GLY 136 283 ? ? ? D . n A 1 137 GLU 137 284 ? ? ? D . n A 1 138 GLY 138 285 ? ? ? D . n A 1 139 ARG 139 286 ? ? ? D . n A 1 140 ASN 140 287 ? ? ? D . n A 1 141 MSE 141 288 288 MSE MSE D . n A 1 142 SER 142 289 289 SER SER D . n A 1 143 LEU 143 290 290 LEU LEU D . n A 1 144 PHE 144 291 291 PHE PHE D . n A 1 145 LEU 145 292 292 LEU LEU D . n A 1 146 LEU 146 293 293 LEU LEU D . n A 1 147 MSE 147 294 294 MSE MSE D . n A 1 148 LYS 148 295 295 LYS LYS D . n A 1 149 ARG 149 296 296 ARG ARG D . n A 1 150 TYR 150 297 297 TYR TYR D . n A 1 151 ASP 151 298 298 ASP ASP D . n A 1 152 CYS 152 299 299 CYS CYS D . n A 1 153 ASN 153 300 300 ASN ASN D . n A 1 154 LEU 154 301 301 LEU LEU D . n A 1 155 GLN 155 302 302 GLN GLN D . n A 1 156 SER 156 303 303 SER SER D . n A 1 157 PHE 157 304 304 PHE PHE D . n A 1 158 LEU 158 305 305 LEU LEU D . n A 1 159 SER 159 306 306 SER SER D . n A 1 160 THR 160 307 307 THR THR D . n A 1 161 ALA 161 308 308 ALA ALA D . n A 1 162 PRO 162 309 309 PRO PRO D . n A 1 163 SER 163 310 310 SER SER D . n A 1 164 THR 164 311 311 THR THR D . n A 1 165 ARG 165 312 312 ARG ARG D . n A 1 166 THR 166 313 313 THR THR D . n A 1 167 SER 167 314 314 SER SER D . n A 1 168 LEU 168 315 315 LEU LEU D . n A 1 169 LEU 169 316 316 LEU LEU D . n A 1 170 LEU 170 317 317 LEU LEU D . n A 1 171 LEU 171 318 318 LEU LEU D . n A 1 172 ALA 172 319 319 ALA ALA D . n A 1 173 GLN 173 320 320 GLN GLN D . n A 1 174 LEU 174 321 321 LEU LEU D . n A 1 175 LEU 175 322 322 LEU LEU D . n A 1 176 GLU 176 323 323 GLU GLU D . n A 1 177 GLY 177 324 324 GLY GLY D . n A 1 178 VAL 178 325 325 VAL VAL D . n A 1 179 ALA 179 326 326 ALA ALA D . n A 1 180 HIS 180 327 327 HIS HIS D . n A 1 181 MSE 181 328 328 MSE MSE D . n A 1 182 THR 182 329 329 THR THR D . n A 1 183 ALA 183 330 330 ALA ALA D . n A 1 184 HIS 184 331 331 HIS HIS D . n A 1 185 GLY 185 332 332 GLY GLY D . n A 1 186 ILE 186 333 333 ILE ILE D . n A 1 187 ALA 187 334 334 ALA ALA D . n A 1 188 HIS 188 335 335 HIS HIS D . n A 1 189 ARG 189 336 336 ARG ARG D . n A 1 190 ASP 190 337 337 ASP ASP D . n A 1 191 LEU 191 338 338 LEU LEU D . n A 1 192 LYS 192 339 339 LYS LYS D . n A 1 193 SER 193 340 340 SER SER D . n A 1 194 ASP 194 341 341 ASP ASP D . n A 1 195 ASN 195 342 342 ASN ASN D . n A 1 196 LEU 196 343 343 LEU LEU D . n A 1 197 LEU 197 344 344 LEU LEU D . n A 1 198 LEU 198 345 345 LEU LEU D . n A 1 199 ASP 199 346 346 ASP ASP D . n A 1 200 THR 200 347 347 THR THR D . n A 1 201 SER 201 348 348 SER SER D . n A 1 202 GLU 202 349 349 GLU GLU D . n A 1 203 PRO 203 350 350 PRO PRO D . n A 1 204 GLU 204 351 351 GLU GLU D . n A 1 205 SER 205 352 352 SER SER D . n A 1 206 PRO 206 353 353 PRO PRO D . n A 1 207 ILE 207 354 354 ILE ILE D . n A 1 208 LEU 208 355 355 LEU LEU D . n A 1 209 VAL 209 356 356 VAL VAL D . n A 1 210 ILE 210 357 357 ILE ILE D . n A 1 211 SER 211 358 358 SER SER D . n A 1 212 ASP 212 359 359 ASP ASP D . n A 1 213 PHE 213 360 360 PHE PHE D . n A 1 214 GLY 214 361 361 GLY GLY D . n A 1 215 CYS 215 362 362 CYS CYS D . n A 1 216 CYS 216 363 363 CYS CYS D . n A 1 217 LEU 217 364 364 LEU LEU D . n A 1 218 ALA 218 365 365 ALA ALA D . n A 1 219 ASP 219 366 366 ASP ASP D . n A 1 220 LYS 220 367 367 LYS LYS D . n A 1 221 THR 221 368 368 THR THR D . n A 1 222 ASN 222 369 369 ASN ASN D . n A 1 223 GLY 223 370 370 GLY GLY D . n A 1 224 LEU 224 371 371 LEU LEU D . n A 1 225 SER 225 372 372 SER SER D . n A 1 226 LEU 226 373 373 LEU LEU D . n A 1 227 PRO 227 374 374 PRO PRO D . n A 1 228 TYR 228 375 375 TYR TYR D . n A 1 229 THR 229 376 376 THR THR D . n A 1 230 ASP 230 377 377 ASP ASP D . n A 1 231 TYR 231 378 378 TYR TYR D . n A 1 232 GLU 232 379 379 GLU GLU D . n A 1 233 MSE 233 380 380 MSE MSE D . n A 1 234 ASP 234 381 381 ASP ASP D . n A 1 235 LYS 235 382 382 LYS LYS D . n A 1 236 GLY 236 383 383 GLY GLY D . n A 1 237 GLY 237 384 384 GLY GLY D . n A 1 238 ASN 238 385 385 ASN ASN D . n A 1 239 GLU 239 386 386 GLU GLU D . n A 1 240 ALA 240 387 387 ALA ALA D . n A 1 241 LEU 241 388 388 LEU LEU D . n A 1 242 MSE 242 389 389 MSE MSE D . n A 1 243 ALA 243 390 390 ALA ALA D . n A 1 244 PRO 244 391 391 PRO PRO D . n A 1 245 GLU 245 392 392 GLU GLU D . n A 1 246 ILE 246 393 393 ILE ILE D . n A 1 247 ILE 247 394 394 ILE ILE D . n A 1 248 CYS 248 395 395 CYS CYS D . n A 1 249 GLN 249 396 396 GLN GLN D . n A 1 250 LYS 250 397 397 LYS LYS D . n A 1 251 PRO 251 398 398 PRO PRO D . n A 1 252 GLY 252 399 399 GLY GLY D . n A 1 253 THR 253 400 400 THR THR D . n A 1 254 PHE 254 401 401 PHE PHE D . n A 1 255 SER 255 402 402 SER SER D . n A 1 256 VAL 256 403 403 VAL VAL D . n A 1 257 LEU 257 404 404 LEU LEU D . n A 1 258 ASN 258 405 405 ASN ASN D . n A 1 259 TYR 259 406 406 TYR TYR D . n A 1 260 SER 260 407 407 SER SER D . n A 1 261 LYS 261 408 408 LYS LYS D . n A 1 262 ALA 262 409 409 ALA ALA D . n A 1 263 ASP 263 410 410 ASP ASP D . n A 1 264 LEU 264 411 411 LEU LEU D . n A 1 265 TRP 265 412 412 TRP TRP D . n A 1 266 ALA 266 413 413 ALA ALA D . n A 1 267 VAL 267 414 414 VAL VAL D . n A 1 268 GLY 268 415 415 GLY GLY D . n A 1 269 ALA 269 416 416 ALA ALA D . n A 1 270 ILE 270 417 417 ILE ILE D . n A 1 271 ALA 271 418 418 ALA ALA D . n A 1 272 TYR 272 419 419 TYR TYR D . n A 1 273 GLU 273 420 420 GLU GLU D . n A 1 274 ILE 274 421 421 ILE ILE D . n A 1 275 PHE 275 422 422 PHE PHE D . n A 1 276 ASN 276 423 423 ASN ASN D . n A 1 277 CYS 277 424 424 CYS CYS D . n A 1 278 HIS 278 425 425 HIS HIS D . n A 1 279 ASN 279 426 426 ASN ASN D . n A 1 280 PRO 280 427 427 PRO PRO D . n A 1 281 PHE 281 428 428 PHE PHE D . n A 1 282 TYR 282 429 429 TYR TYR D . n A 1 283 GLY 283 430 430 GLY GLY D . n A 1 284 PRO 284 431 431 PRO PRO D . n A 1 285 SER 285 432 432 SER SER D . n A 1 286 ARG 286 433 433 ARG ARG D . n A 1 287 LEU 287 434 434 LEU LEU D . n A 1 288 LYS 288 435 435 LYS LYS D . n A 1 289 ASN 289 436 436 ASN ASN D . n A 1 290 PHE 290 437 437 PHE PHE D . n A 1 291 ASN 291 438 438 ASN ASN D . n A 1 292 TYR 292 439 439 TYR TYR D . n A 1 293 LYS 293 440 440 LYS LYS D . n A 1 294 GLU 294 441 441 GLU GLU D . n A 1 295 GLY 295 442 442 GLY GLY D . n A 1 296 ASP 296 443 443 ASP ASP D . n A 1 297 LEU 297 444 444 LEU LEU D . n A 1 298 PRO 298 445 445 PRO PRO D . n A 1 299 LYS 299 446 446 LYS LYS D . n A 1 300 LEU 300 447 447 LEU LEU D . n A 1 301 PRO 301 448 448 PRO PRO D . n A 1 302 ASP 302 449 449 ASP ASP D . n A 1 303 GLU 303 450 450 GLU GLU D . n A 1 304 VAL 304 451 451 VAL VAL D . n A 1 305 PRO 305 452 452 PRO PRO D . n A 1 306 THR 306 453 453 THR THR D . n A 1 307 VAL 307 454 454 VAL VAL D . n A 1 308 ILE 308 455 455 ILE ILE D . n A 1 309 GLN 309 456 456 GLN GLN D . n A 1 310 ALA 310 457 457 ALA ALA D . n A 1 311 LEU 311 458 458 LEU LEU D . n A 1 312 VAL 312 459 459 VAL VAL D . n A 1 313 ALA 313 460 460 ALA ALA D . n A 1 314 ASN 314 461 461 ASN ASN D . n A 1 315 LEU 315 462 462 LEU LEU D . n A 1 316 LEU 316 463 463 LEU LEU D . n A 1 317 LYS 317 464 464 LYS LYS D . n A 1 318 ARG 318 465 465 ARG ARG D . n A 1 319 ASN 319 466 466 ASN ASN D . n A 1 320 PRO 320 467 467 PRO PRO D . n A 1 321 ASN 321 468 468 ASN ASN D . n A 1 322 LYS 322 469 469 LYS LYS D . n A 1 323 ARG 323 470 470 ARG ARG D . n A 1 324 LEU 324 471 471 LEU LEU D . n A 1 325 ASP 325 472 472 ASP ASP D . n A 1 326 PRO 326 473 473 PRO PRO D . n A 1 327 GLU 327 474 474 GLU GLU D . n A 1 328 VAL 328 475 475 VAL VAL D . n A 1 329 ALA 329 476 476 ALA ALA D . n A 1 330 ALA 330 477 477 ALA ALA D . n A 1 331 ASN 331 478 478 ASN ASN D . n A 1 332 VAL 332 479 479 VAL VAL D . n A 1 333 CYS 333 480 480 CYS CYS D . n A 1 334 GLN 334 481 481 GLN GLN D . n A 1 335 LEU 335 482 482 LEU LEU D . n A 1 336 PHE 336 483 483 PHE PHE D . n A 1 337 LEU 337 484 484 LEU LEU D . n A 1 338 TRP 338 485 485 TRP TRP D . n A 1 339 ALA 339 486 486 ALA ALA D . n A 1 340 PRO 340 487 487 PRO PRO D . n A 1 341 SER 341 488 488 SER SER D . n A 1 342 THR 342 489 489 THR THR D . n A 1 343 TRP 343 490 490 TRP TRP D . n A 1 344 LEU 344 491 491 LEU LEU D . n A 1 345 LYS 345 492 492 LYS LYS D . n A 1 346 PRO 346 493 493 PRO PRO D . n A 1 347 GLY 347 494 494 GLY GLY D . n A 1 348 LEU 348 495 495 LEU LEU D . n A 1 349 LYS 349 496 496 LYS LYS D . n A 1 350 VAL 350 497 497 VAL VAL D . n A 1 351 PRO 351 498 498 PRO PRO D . n A 1 352 THR 352 499 499 THR THR D . n A 1 353 SER 353 500 500 SER SER D . n A 1 354 GLY 354 501 501 GLY GLY D . n A 1 355 GLU 355 502 502 GLU GLU D . n A 1 356 ILE 356 503 503 ILE ILE D . n A 1 357 LEU 357 504 504 LEU LEU D . n A 1 358 GLN 358 505 505 GLN GLN D . n A 1 359 TRP 359 506 506 TRP TRP D . n A 1 360 LEU 360 507 507 LEU LEU D . n A 1 361 LEU 361 508 508 LEU LEU D . n A 1 362 SER 362 509 509 SER SER D . n A 1 363 LEU 363 510 510 LEU LEU D . n A 1 364 THR 364 511 511 THR THR D . n A 1 365 THR 365 512 512 THR THR D . n A 1 366 LYS 366 513 513 LYS LYS D . n A 1 367 VAL 367 514 514 VAL VAL D . n A 1 368 LEU 368 515 515 LEU LEU D . n A 1 369 CYS 369 516 516 CYS CYS D . n A 1 370 GLU 370 517 ? ? ? D . n A 1 371 GLY 371 518 ? ? ? D . n A 1 372 LYS 372 519 ? ? ? D . n A 1 373 ILE 373 520 ? ? ? D . n A 1 374 ASN 374 521 ? ? ? D . n A 1 375 ASN 375 522 ? ? ? D . n A 1 376 LYS 376 523 ? ? ? D . n A 1 377 SER 377 524 ? ? ? D . n A 1 378 PHE 378 525 ? ? ? D . n A 1 379 GLY 379 526 ? ? ? D . n A 1 380 GLU 380 527 527 GLU GLU D . n A 1 381 LYS 381 528 528 LYS LYS D . n A 1 382 PHE 382 529 529 PHE PHE D . n A 1 383 GLU 383 530 530 GLU GLU D . n A 1 384 ARG 384 531 531 ARG ARG D . n A 1 385 ASN 385 532 532 ASN ASN D . n A 1 386 TRP 386 533 533 TRP TRP D . n A 1 387 ARG 387 534 534 ARG ARG D . n A 1 388 ARG 388 535 535 ARG ARG D . n A 1 389 THR 389 536 536 THR THR D . n A 1 390 TYR 390 537 537 TYR TYR D . n A 1 391 PRO 391 538 538 PRO PRO D . n A 1 392 GLU 392 539 539 GLU GLU D . n A 1 393 TYR 393 540 540 TYR TYR D . n A 1 394 LEU 394 541 541 LEU LEU D . n A 1 395 LEU 395 542 542 LEU LEU D . n A 1 396 ILE 396 543 543 ILE ILE D . n A 1 397 SER 397 544 544 SER SER D . n A 1 398 SER 398 545 545 SER SER D . n A 1 399 PHE 399 546 546 PHE PHE D . n A 1 400 LEU 400 547 547 LEU LEU D . n A 1 401 CYS 401 548 548 CYS CYS D . n A 1 402 ARG 402 549 549 ARG ARG D . n A 1 403 ALA 403 550 550 ALA ALA D . n A 1 404 LYS 404 551 551 LYS LYS D . n A 1 405 LEU 405 552 552 LEU LEU D . n A 1 406 ALA 406 553 553 ALA ALA D . n A 1 407 ASN 407 554 554 ASN ASN D . n A 1 408 VAL 408 555 555 VAL VAL D . n A 1 409 ARG 409 556 556 ARG ARG D . n A 1 410 ASN 410 557 557 ASN ASN D . n A 1 411 ALA 411 558 558 ALA ALA D . n A 1 412 LEU 412 559 559 LEU LEU D . n A 1 413 HIS 413 560 560 HIS HIS D . n A 1 414 TRP 414 561 561 TRP TRP D . n A 1 415 ILE 415 562 562 ILE ILE D . n A 1 416 GLN 416 563 563 GLN GLN D . n A 1 417 GLU 417 564 564 GLU GLU D . n A 1 418 ASN 418 565 565 ASN ASN D . n A 1 419 LEU 419 566 566 LEU LEU D . n A 1 420 PRO 420 567 567 PRO PRO D . n A 1 421 GLU 421 568 568 GLU GLU D . n A 1 422 LEU 422 569 569 LEU LEU D . n A 1 423 ASP 423 570 570 ASP ASP D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP 1 601 401 ANP ANP D . C 3 MG 1 602 1 MG MG D . D 3 MG 1 603 2 MG MG D . E 4 HOH 1 701 2 HOH HOH D . E 4 HOH 2 702 1 HOH HOH D . E 4 HOH 3 703 3 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 50 D MSE 197 ? MET 'modified residue' 2 A MSE 51 D MSE 198 ? MET 'modified residue' 3 A MSE 61 D MSE 208 ? MET 'modified residue' 4 A MSE 67 D MSE 214 ? MET 'modified residue' 5 A MSE 76 D MSE 223 ? MET 'modified residue' 6 A MSE 141 D MSE 288 ? MET 'modified residue' 7 A MSE 147 D MSE 294 ? MET 'modified residue' 8 A MSE 181 D MSE 328 ? MET 'modified residue' 9 A MSE 233 D MSE 380 ? MET 'modified residue' 10 A MSE 242 D MSE 389 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1030 ? 1 MORE -23 ? 1 'SSA (A^2)' 17290 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 70 ? D GLU 217 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 OD1 ? A ASP 212 ? D ASP 359 ? 1_555 75.7 ? 2 OE2 ? A GLU 70 ? D GLU 217 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 117.7 ? 3 OD1 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 51.3 ? 4 OE2 ? A GLU 70 ? D GLU 217 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 O2B ? B ANP . ? D ANP 601 ? 1_555 91.9 ? 5 OD1 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 O2B ? B ANP . ? D ANP 601 ? 1_555 110.6 ? 6 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 O2B ? B ANP . ? D ANP 601 ? 1_555 80.5 ? 7 OE2 ? A GLU 70 ? D GLU 217 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 O ? E HOH . ? D HOH 703 ? 1_555 115.4 ? 8 OD1 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 O ? E HOH . ? D HOH 703 ? 1_555 73.9 ? 9 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 O ? E HOH . ? D HOH 703 ? 1_555 82.2 ? 10 O2B ? B ANP . ? D ANP 601 ? 1_555 MG ? C MG . ? D MG 602 ? 1_555 O ? E HOH . ? D HOH 703 ? 1_555 152.2 ? 11 OD1 ? A ASN 195 ? D ASN 342 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 100.5 ? 12 OD1 ? A ASN 195 ? D ASN 342 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O1G ? B ANP . ? D ANP 601 ? 1_555 128.5 ? 13 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O1G ? B ANP . ? D ANP 601 ? 1_555 127.5 ? 14 OD1 ? A ASN 195 ? D ASN 342 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O1A ? B ANP . ? D ANP 601 ? 1_555 93.3 ? 15 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O1A ? B ANP . ? D ANP 601 ? 1_555 74.9 ? 16 O1G ? B ANP . ? D ANP 601 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O1A ? B ANP . ? D ANP 601 ? 1_555 83.7 ? 17 OD1 ? A ASN 195 ? D ASN 342 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 701 ? 1_555 76.0 ? 18 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 701 ? 1_555 151.2 ? 19 O1G ? B ANP . ? D ANP 601 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 701 ? 1_555 53.1 ? 20 O1A ? B ANP . ? D ANP 601 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 701 ? 1_555 76.8 ? 21 OD1 ? A ASN 195 ? D ASN 342 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 702 ? 1_555 72.7 ? 22 OD2 ? A ASP 212 ? D ASP 359 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 702 ? 1_555 138.1 ? 23 O1G ? B ANP . ? D ANP 601 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 702 ? 1_555 81.1 ? 24 O1A ? B ANP . ? D ANP 601 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 702 ? 1_555 145.2 ? 25 O ? E HOH . ? D HOH 701 ? 1_555 MG ? D MG . ? D MG 603 ? 1_555 O ? E HOH . ? D HOH 702 ? 1_555 69.0 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2018-07-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 46.9343 _pdbx_refine_tls.origin_y 44.2287 _pdbx_refine_tls.origin_z 7.9071 _pdbx_refine_tls.T[1][1] 0.1982 _pdbx_refine_tls.T[2][2] 0.2996 _pdbx_refine_tls.T[3][3] 0.1538 _pdbx_refine_tls.T[1][2] -0.0076 _pdbx_refine_tls.T[1][3] -0.0306 _pdbx_refine_tls.T[2][3] -0.0233 _pdbx_refine_tls.L[1][1] 3.6891 _pdbx_refine_tls.L[2][2] 2.8590 _pdbx_refine_tls.L[3][3] 1.6302 _pdbx_refine_tls.L[1][2] -0.1563 _pdbx_refine_tls.L[1][3] 0.2194 _pdbx_refine_tls.L[2][3] 0.3124 _pdbx_refine_tls.S[1][1] 0.1039 _pdbx_refine_tls.S[1][2] -0.4298 _pdbx_refine_tls.S[1][3] 0.5524 _pdbx_refine_tls.S[2][1] 0.1963 _pdbx_refine_tls.S[2][2] -0.0346 _pdbx_refine_tls.S[2][3] -0.1131 _pdbx_refine_tls.S[3][1] -0.2293 _pdbx_refine_tls.S[3][2] -0.1819 _pdbx_refine_tls.S[3][3] -0.0403 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.2_1309 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O D LYS 382 ? ? OH D TYR 406 ? ? 1.90 2 1 O D TYR 375 ? ? OG D SER 402 ? ? 2.10 3 1 O1G D ANP 601 ? ? O D HOH 701 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS D 180 ? ? -157.15 16.72 2 1 GLU D 379 ? ? 43.58 28.97 3 1 LEU D 569 ? ? 70.84 47.08 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D GLY 148 ? A GLY 1 2 1 Y 1 D PRO 149 ? A PRO 2 3 1 Y 1 D LEU 150 ? A LEU 3 4 1 Y 1 D GLY 151 ? A GLY 4 5 1 Y 1 D SER 152 ? A SER 5 6 1 Y 1 D GLU 153 ? A GLU 6 7 1 Y 1 D SER 154 ? A SER 7 8 1 Y 1 D ASN 155 ? A ASN 8 9 1 Y 1 D PRO 156 ? A PRO 9 10 1 Y 1 D ILE 157 ? A ILE 10 11 1 Y 1 D THR 158 ? A THR 11 12 1 Y 1 D LEU 159 ? A LEU 12 13 1 Y 1 D ASN 160 ? A ASN 13 14 1 Y 1 D ASP 161 ? A ASP 14 15 1 Y 1 D LEU 162 ? A LEU 15 16 1 Y 1 D SER 163 ? A SER 16 17 1 Y 1 D LEU 164 ? A LEU 17 18 1 Y 1 D GLY 165 ? A GLY 18 19 1 Y 1 D ASP 184 ? A ASP 37 20 1 Y 1 D GLU 185 ? A GLU 38 21 1 Y 1 D THR 186 ? A THR 39 22 1 Y 1 D ASP 187 ? A ASP 40 23 1 Y 1 D ASP 188 ? A ASP 41 24 1 Y 1 D ASN 189 ? A ASN 42 25 1 Y 1 D LYS 190 ? A LYS 43 26 1 Y 1 D SER 226 ? A SER 79 27 1 Y 1 D ASN 227 ? A ASN 80 28 1 Y 1 D HIS 228 ? A HIS 81 29 1 Y 1 D ASP 229 ? A ASP 82 30 1 Y 1 D LEU 230 ? A LEU 83 31 1 Y 1 D ASN 231 ? A ASN 84 32 1 Y 1 D ASN 232 ? A ASN 85 33 1 Y 1 D TRP 233 ? A TRP 86 34 1 Y 1 D GLU 234 ? A GLU 87 35 1 Y 1 D ILE 235 ? A ILE 88 36 1 Y 1 D GLU 236 ? A GLU 89 37 1 Y 1 D LEU 237 ? A LEU 90 38 1 Y 1 D ALA 238 ? A ALA 91 39 1 Y 1 D ASN 239 ? A ASN 92 40 1 Y 1 D ARG 240 ? A ARG 93 41 1 Y 1 D ARG 241 ? A ARG 94 42 1 Y 1 D ASP 259 ? A ASP 112 43 1 Y 1 D LEU 260 ? A LEU 113 44 1 Y 1 D ILE 261 ? A ILE 114 45 1 Y 1 D GLN 262 ? A GLN 115 46 1 Y 1 D GLU 263 ? A GLU 116 47 1 Y 1 D LEU 264 ? A LEU 117 48 1 Y 1 D GLU 265 ? A GLU 118 49 1 Y 1 D GLY 266 ? A GLY 119 50 1 Y 1 D SER 267 ? A SER 120 51 1 Y 1 D LYS 268 ? A LYS 121 52 1 Y 1 D ASP 269 ? A ASP 122 53 1 Y 1 D LEU 270 ? A LEU 123 54 1 Y 1 D TYR 271 ? A TYR 124 55 1 Y 1 D PRO 272 ? A PRO 125 56 1 Y 1 D ALA 273 ? A ALA 126 57 1 Y 1 D ALA 274 ? A ALA 127 58 1 Y 1 D LEU 275 ? A LEU 128 59 1 Y 1 D PRO 276 ? A PRO 129 60 1 Y 1 D PRO 277 ? A PRO 130 61 1 Y 1 D ARG 278 ? A ARG 131 62 1 Y 1 D LEU 279 ? A LEU 132 63 1 Y 1 D HIS 280 ? A HIS 133 64 1 Y 1 D PRO 281 ? A PRO 134 65 1 Y 1 D GLU 282 ? A GLU 135 66 1 Y 1 D GLY 283 ? A GLY 136 67 1 Y 1 D GLU 284 ? A GLU 137 68 1 Y 1 D GLY 285 ? A GLY 138 69 1 Y 1 D ARG 286 ? A ARG 139 70 1 Y 1 D ASN 287 ? A ASN 140 71 1 Y 1 D GLU 517 ? A GLU 370 72 1 Y 1 D GLY 518 ? A GLY 371 73 1 Y 1 D LYS 519 ? A LYS 372 74 1 Y 1 D ILE 520 ? A ILE 373 75 1 Y 1 D ASN 521 ? A ASN 374 76 1 Y 1 D ASN 522 ? A ASN 375 77 1 Y 1 D LYS 523 ? A LYS 376 78 1 Y 1 D SER 524 ? A SER 377 79 1 Y 1 D PHE 525 ? A PHE 378 80 1 Y 1 D GLY 526 ? A GLY 379 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal JSPS Japan JP15H01175 1 JSPS Japan 24687012 2 JSPS Japan JP16H04750 3 JSPS Japan JP15J10559 4 CREST Japan JPMJCR12M5 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' ANP 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #