data_5YJK # _entry.id 5YJK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5YJK WWPDB D_1300005369 # _pdbx_database_related.db_name PDB _pdbx_database_related.details '5Y9L contains the same protein in complex with similar compound.' _pdbx_database_related.db_id 5Y9L _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YJK _pdbx_database_status.recvd_initial_deposition_date 2017-10-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Sugawara, H.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Bioorg. Med. Chem. Lett.' _citation.journal_id_ASTM BMCLE8 _citation.journal_id_CSD 1127 _citation.journal_id_ISSN 1464-3405 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 5272 _citation.page_last 5276 _citation.title ;Discovery and structure-activity relationship study of 1,3,6-trisubstituted 1,4-diazepane-7-ones as novel human kallikrein 7 inhibitors ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2017.10.030 _citation.pdbx_database_id_PubMed 29102227 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Murafuji, H.' 1 primary 'Sakai, H.' 2 primary 'Goto, M.' 3 primary 'Imajo, S.' 4 primary 'Sugawara, H.' 5 primary 'Muto, T.' 6 # _cell.entry_id 5YJK _cell.length_a 59.286 _cell.length_b 86.576 _cell.length_c 89.059 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YJK _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Kallikrein-7 24481.160 1 3.4.21.117 ? ? ? 2 non-polymer syn '(R)-2-(6-(5-chloro-2-methoxybenzyl)-3-(2,2-dimethylhydrazono)-7-oxo-1,4-diazepan-1-yl)-N-(3-(methylsulfonyl)phenyl)acetamide' 536.043 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 32 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hK7,Serine protease 6,Stratum corneum chymotryptic enzyme,hSCCE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTH VNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSML CAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKHR ; _entity_poly.pdbx_seq_one_letter_code_can ;IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTH VNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSML CAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKHR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ILE n 1 3 ASP n 1 4 GLY n 1 5 ALA n 1 6 PRO n 1 7 CYS n 1 8 ALA n 1 9 ARG n 1 10 GLY n 1 11 SER n 1 12 HIS n 1 13 PRO n 1 14 TRP n 1 15 GLN n 1 16 VAL n 1 17 ALA n 1 18 LEU n 1 19 LEU n 1 20 SER n 1 21 GLY n 1 22 ASN n 1 23 GLN n 1 24 LEU n 1 25 HIS n 1 26 CYS n 1 27 GLY n 1 28 GLY n 1 29 VAL n 1 30 LEU n 1 31 VAL n 1 32 ASN n 1 33 GLU n 1 34 ARG n 1 35 TRP n 1 36 VAL n 1 37 LEU n 1 38 THR n 1 39 ALA n 1 40 ALA n 1 41 HIS n 1 42 CYS n 1 43 LYS n 1 44 MET n 1 45 ASN n 1 46 GLU n 1 47 TYR n 1 48 THR n 1 49 VAL n 1 50 HIS n 1 51 LEU n 1 52 GLY n 1 53 SER n 1 54 ASP n 1 55 THR n 1 56 LEU n 1 57 GLY n 1 58 ASP n 1 59 ARG n 1 60 ARG n 1 61 ALA n 1 62 GLN n 1 63 ARG n 1 64 ILE n 1 65 LYS n 1 66 ALA n 1 67 SER n 1 68 LYS n 1 69 SER n 1 70 PHE n 1 71 ARG n 1 72 HIS n 1 73 PRO n 1 74 GLY n 1 75 TYR n 1 76 SER n 1 77 THR n 1 78 GLN n 1 79 THR n 1 80 HIS n 1 81 VAL n 1 82 ASN n 1 83 ASP n 1 84 LEU n 1 85 MET n 1 86 LEU n 1 87 VAL n 1 88 LYS n 1 89 LEU n 1 90 ASN n 1 91 SER n 1 92 GLN n 1 93 ALA n 1 94 ARG n 1 95 LEU n 1 96 SER n 1 97 SER n 1 98 MET n 1 99 VAL n 1 100 LYS n 1 101 LYS n 1 102 VAL n 1 103 ARG n 1 104 LEU n 1 105 PRO n 1 106 SER n 1 107 ARG n 1 108 CYS n 1 109 GLU n 1 110 PRO n 1 111 PRO n 1 112 GLY n 1 113 THR n 1 114 THR n 1 115 CYS n 1 116 THR n 1 117 VAL n 1 118 SER n 1 119 GLY n 1 120 TRP n 1 121 GLY n 1 122 THR n 1 123 THR n 1 124 THR n 1 125 SER n 1 126 PRO n 1 127 ASP n 1 128 VAL n 1 129 THR n 1 130 PHE n 1 131 PRO n 1 132 SER n 1 133 ASP n 1 134 LEU n 1 135 MET n 1 136 CYS n 1 137 VAL n 1 138 ASP n 1 139 VAL n 1 140 LYS n 1 141 LEU n 1 142 ILE n 1 143 SER n 1 144 PRO n 1 145 GLN n 1 146 ASP n 1 147 CYS n 1 148 THR n 1 149 LYS n 1 150 VAL n 1 151 TYR n 1 152 LYS n 1 153 ASP n 1 154 LEU n 1 155 LEU n 1 156 GLU n 1 157 ASN n 1 158 SER n 1 159 MET n 1 160 LEU n 1 161 CYS n 1 162 ALA n 1 163 GLY n 1 164 ILE n 1 165 PRO n 1 166 ASP n 1 167 SER n 1 168 LYS n 1 169 LYS n 1 170 ASN n 1 171 ALA n 1 172 CYS n 1 173 ASN n 1 174 GLY n 1 175 ASP n 1 176 SER n 1 177 GLY n 1 178 GLY n 1 179 PRO n 1 180 LEU n 1 181 VAL n 1 182 CYS n 1 183 ARG n 1 184 GLY n 1 185 THR n 1 186 LEU n 1 187 GLN n 1 188 GLY n 1 189 LEU n 1 190 VAL n 1 191 SER n 1 192 TRP n 1 193 GLY n 1 194 THR n 1 195 PHE n 1 196 PRO n 1 197 CYS n 1 198 GLY n 1 199 GLN n 1 200 PRO n 1 201 ASN n 1 202 ASP n 1 203 PRO n 1 204 GLY n 1 205 VAL n 1 206 TYR n 1 207 THR n 1 208 GLN n 1 209 VAL n 1 210 CYS n 1 211 LYS n 1 212 PHE n 1 213 THR n 1 214 LYS n 1 215 TRP n 1 216 ILE n 1 217 ASN n 1 218 ASP n 1 219 THR n 1 220 MET n 1 221 LYS n 1 222 LYS n 1 223 HIS n 1 224 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 224 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KLK7, PRSS6, SCCE' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KLK7_HUMAN _struct_ref.pdbx_db_accession P49862 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTH VNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSML CAGIPDSKKNACNGDSGGPLVCRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKHR ; _struct_ref.pdbx_align_begin 30 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5YJK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 224 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P49862 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 253 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 16 _struct_ref_seq.pdbx_auth_seq_align_end 246 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8VX non-polymer . '(R)-2-(6-(5-chloro-2-methoxybenzyl)-3-(2,2-dimethylhydrazono)-7-oxo-1,4-diazepan-1-yl)-N-(3-(methylsulfonyl)phenyl)acetamide' ;2-[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]-N-(3-methylsulfonylphenyl)ethanamide ; 'C24 H30 Cl N5 O5 S' 536.043 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YJK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG1000, PEG3350, 2-methyl-2,4-pentanediol, sodium nitrate, sodium hydrogen phosphate, ammonium sulfate, bicine/trizma buffer' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-01-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-002' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YJK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 62.078 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8171 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 87.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YJK _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7709 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.93 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 87.22 _refine.ls_R_factor_obs 0.20702 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20522 _refine.ls_R_factor_R_free 0.24243 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 384 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.911 _refine.correlation_coeff_Fo_to_Fc_free 0.871 _refine.B_iso_mean 20.916 _refine.aniso_B[1][1] -0.94 _refine.aniso_B[2][2] 1.11 _refine.aniso_B[3][3] -0.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.914 _refine.pdbx_overall_ESU_R_Free 0.298 _refine.overall_SU_ML 0.227 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.111 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1706 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1776 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 32.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.019 ? 1794 'X-RAY DIFFRACTION' ? r_bond_other_d 0.009 0.020 ? 1641 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.887 1.980 ? 2443 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.162 3.000 ? 3826 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.413 5.000 ? 225 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.747 23.824 ? 68 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.278 15.000 ? 299 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.546 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.108 0.200 ? 270 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1976 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 344 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.956 2.016 ? 897 'X-RAY DIFFRACTION' ? r_mcbond_other 0.956 2.015 ? 896 'X-RAY DIFFRACTION' ? r_mcangle_it 1.618 3.021 ? 1120 'X-RAY DIFFRACTION' ? r_mcangle_other 1.617 3.022 ? 1121 'X-RAY DIFFRACTION' ? r_scbond_it 1.345 2.227 ? 897 'X-RAY DIFFRACTION' ? r_scbond_other 1.344 2.229 ? 898 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 2.147 3.264 ? 1323 'X-RAY DIFFRACTION' ? r_long_range_B_refined 3.509 23.483 ? 1908 'X-RAY DIFFRACTION' ? r_long_range_B_other 3.508 23.483 ? 1909 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 403 _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.percent_reflns_obs 62.11 _refine_ls_shell.R_factor_R_free 0.289 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 5YJK _struct.title 'Human kallikrein 7 in complex with 1,4-diazepane-7-one 1-acetamide derivative' _struct.pdbx_descriptor 'Kallikrein-7 (E.C.3.4.21.117)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YJK _struct_keywords.text 'protease, inhibitor complex, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 39 ? LYS A 43 ? ALA A 55 LYS A 59 5 ? 5 HELX_P HELX_P2 AA2 SER A 143 ? LYS A 152 ? SER A 164 LYS A 173 1 ? 10 HELX_P HELX_P3 AA3 ASP A 153 ? LEU A 155 ? ASP A 174 LEU A 176 5 ? 3 HELX_P HELX_P4 AA4 PHE A 212 ? HIS A 223 ? PHE A 234 HIS A 245 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 136 SG ? ? A CYS 22 A CYS 157 1_555 ? ? ? ? ? ? ? 1.909 ? disulf2 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 1.993 ? disulf3 disulf ? ? A CYS 108 SG ? ? ? 1_555 A CYS 210 SG ? ? A CYS 129 A CYS 232 1_555 ? ? ? ? ? ? ? 2.033 ? disulf4 disulf ? ? A CYS 115 SG ? ? ? 1_555 A CYS 182 SG ? ? A CYS 136 A CYS 201 1_555 ? ? ? ? ? ? ? 2.000 ? disulf5 disulf ? ? A CYS 147 SG ? ? ? 1_555 A CYS 161 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.053 ? disulf6 disulf ? ? A CYS 172 SG ? ? ? 1_555 A CYS 197 SG ? ? A CYS 191 A CYS 220 1_555 ? ? ? ? ? ? ? 2.009 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 125 A . ? SER 146 A PRO 126 A ? PRO 147 A 1 1.46 2 PHE 195 A . ? PHE 218 A PRO 196 A ? PRO 219 A 1 3.98 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 5 ? PRO A 6 ? ALA A 20 PRO A 21 AA1 2 MET A 135 ? ILE A 142 ? MET A 156 ILE A 163 AA1 3 MET A 159 ? GLY A 163 ? MET A 180 GLY A 184 AA1 4 GLY A 204 ? GLN A 208 ? GLY A 226 GLN A 230 AA1 5 THR A 185 ? TRP A 192 ? THR A 208 TRP A 215 AA1 6 PRO A 179 ? CYS A 182 ? PRO A 198 CYS A 201 AA1 7 THR A 114 ? GLY A 119 ? THR A 135 GLY A 140 AA1 8 MET A 135 ? ILE A 142 ? MET A 156 ILE A 163 AA2 1 GLN A 62 ? ALA A 66 ? GLN A 81 ALA A 85 AA2 2 TYR A 47 ? LEU A 51 ? TYR A 64 LEU A 68 AA2 3 GLN A 15 ? SER A 20 ? GLN A 30 SER A 35 AA2 4 GLN A 23 ? ASN A 32 ? GLN A 39 ASN A 48 AA2 5 TRP A 35 ? THR A 38 ? TRP A 51 THR A 54 AA2 6 MET A 85 ? LYS A 88 ? MET A 104 LYS A 107 AA2 7 LYS A 68 ? ARG A 71 ? LYS A 87 ARG A 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 5 ? N ALA A 20 O CYS A 136 ? O CYS A 157 AA1 2 3 N ILE A 142 ? N ILE A 163 O CYS A 161 ? O CYS A 182 AA1 3 4 N LEU A 160 ? N LEU A 181 O TYR A 206 ? O TYR A 228 AA1 4 5 O VAL A 205 ? O VAL A 227 N TRP A 192 ? N TRP A 215 AA1 5 6 O GLN A 187 ? O GLN A 210 N LEU A 180 ? N LEU A 199 AA1 6 7 O VAL A 181 ? O VAL A 200 N THR A 116 ? N THR A 137 AA1 7 8 N CYS A 115 ? N CYS A 136 O VAL A 139 ? O VAL A 160 AA2 1 2 O ILE A 64 ? O ILE A 83 N VAL A 49 ? N VAL A 66 AA2 2 3 O THR A 48 ? O THR A 65 N LEU A 19 ? N LEU A 34 AA2 3 4 N LEU A 18 ? N LEU A 33 O HIS A 25 ? O HIS A 41 AA2 4 5 N VAL A 29 ? N VAL A 45 O LEU A 37 ? O LEU A 53 AA2 5 6 N VAL A 36 ? N VAL A 52 O VAL A 87 ? O VAL A 106 AA2 6 7 O LEU A 86 ? O LEU A 105 N PHE A 70 ? N PHE A 89 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 8VX _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 17 _struct_site.details 'binding site for residue 8VX A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 LEU A 24 ? LEU A 40 . ? 1_555 ? 2 AC1 17 HIS A 25 ? HIS A 41 . ? 1_555 ? 3 AC1 17 HIS A 41 ? HIS A 57 . ? 1_555 ? 4 AC1 17 HIS A 80 ? HIS A 99 . ? 1_555 ? 5 AC1 17 PHE A 130 ? PHE A 151 . ? 1_555 ? 6 AC1 17 ALA A 171 ? ALA A 190 . ? 1_555 ? 7 AC1 17 CYS A 172 ? CYS A 191 . ? 1_555 ? 8 AC1 17 ASN A 173 ? ASN A 192 . ? 1_555 ? 9 AC1 17 GLY A 174 ? GLY A 193 . ? 1_555 ? 10 AC1 17 SER A 176 ? SER A 195 . ? 1_555 ? 11 AC1 17 SER A 191 ? SER A 214 . ? 1_555 ? 12 AC1 17 TRP A 192 ? TRP A 215 . ? 1_555 ? 13 AC1 17 GLY A 193 ? GLY A 216 . ? 1_555 ? 14 AC1 17 THR A 194 ? THR A 217 . ? 1_555 ? 15 AC1 17 PHE A 195 ? PHE A 218 . ? 1_555 ? 16 AC1 17 CYS A 197 ? CYS A 220 . ? 1_555 ? 17 AC1 17 GLY A 204 ? GLY A 226 . ? 1_555 ? # _atom_sites.entry_id 5YJK _atom_sites.fract_transf_matrix[1][1] 0.016867 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011551 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011229 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE A . n A 1 2 ILE 2 17 17 ILE ILE A . n A 1 3 ASP 3 18 18 ASP ASP A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 ALA 5 20 20 ALA ALA A . n A 1 6 PRO 6 21 21 PRO PRO A . n A 1 7 CYS 7 22 22 CYS CYS A . n A 1 8 ALA 8 23 23 ALA ALA A . n A 1 9 ARG 9 24 24 ARG ARG A . n A 1 10 GLY 10 25 25 GLY GLY A . n A 1 11 SER 11 26 26 SER SER A . n A 1 12 HIS 12 27 27 HIS HIS A . n A 1 13 PRO 13 28 28 PRO PRO A . n A 1 14 TRP 14 29 29 TRP TRP A . n A 1 15 GLN 15 30 30 GLN GLN A . n A 1 16 VAL 16 31 31 VAL VAL A . n A 1 17 ALA 17 32 32 ALA ALA A . n A 1 18 LEU 18 33 33 LEU LEU A . n A 1 19 LEU 19 34 34 LEU LEU A . n A 1 20 SER 20 35 35 SER SER A . n A 1 21 GLY 21 37 37 GLY GLY A . n A 1 22 ASN 22 38 38 ASN ASN A . n A 1 23 GLN 23 39 39 GLN GLN A . n A 1 24 LEU 24 40 40 LEU LEU A . n A 1 25 HIS 25 41 41 HIS HIS A . n A 1 26 CYS 26 42 42 CYS CYS A . n A 1 27 GLY 27 43 43 GLY GLY A . n A 1 28 GLY 28 44 44 GLY GLY A . n A 1 29 VAL 29 45 45 VAL VAL A . n A 1 30 LEU 30 46 46 LEU LEU A . n A 1 31 VAL 31 47 47 VAL VAL A . n A 1 32 ASN 32 48 48 ASN ASN A . n A 1 33 GLU 33 49 49 GLU GLU A . n A 1 34 ARG 34 50 50 ARG ARG A . n A 1 35 TRP 35 51 51 TRP TRP A . n A 1 36 VAL 36 52 52 VAL VAL A . n A 1 37 LEU 37 53 53 LEU LEU A . n A 1 38 THR 38 54 54 THR THR A . n A 1 39 ALA 39 55 55 ALA ALA A . n A 1 40 ALA 40 56 56 ALA ALA A . n A 1 41 HIS 41 57 57 HIS HIS A . n A 1 42 CYS 42 58 58 CYS CYS A . n A 1 43 LYS 43 59 59 LYS LYS A . n A 1 44 MET 44 60 60 MET MET A . n A 1 45 ASN 45 61 61 ASN ASN A . n A 1 46 GLU 46 63 63 GLU GLU A . n A 1 47 TYR 47 64 64 TYR TYR A . n A 1 48 THR 48 65 65 THR THR A . n A 1 49 VAL 49 66 66 VAL VAL A . n A 1 50 HIS 50 67 67 HIS HIS A . n A 1 51 LEU 51 68 68 LEU LEU A . n A 1 52 GLY 52 69 69 GLY GLY A . n A 1 53 SER 53 70 70 SER SER A . n A 1 54 ASP 54 71 71 ASP ASP A . n A 1 55 THR 55 72 72 THR THR A . n A 1 56 LEU 56 73 73 LEU LEU A . n A 1 57 GLY 57 74 74 GLY GLY A . n A 1 58 ASP 58 75 75 ASP ASP A . n A 1 59 ARG 59 78 78 ARG ARG A . n A 1 60 ARG 60 79 79 ARG ARG A . n A 1 61 ALA 61 80 80 ALA ALA A . n A 1 62 GLN 62 81 81 GLN GLN A . n A 1 63 ARG 63 82 82 ARG ARG A . n A 1 64 ILE 64 83 83 ILE ILE A . n A 1 65 LYS 65 84 84 LYS LYS A . n A 1 66 ALA 66 85 85 ALA ALA A . n A 1 67 SER 67 86 86 SER SER A . n A 1 68 LYS 68 87 87 LYS LYS A . n A 1 69 SER 69 88 88 SER SER A . n A 1 70 PHE 70 89 89 PHE PHE A . n A 1 71 ARG 71 90 90 ARG ARG A . n A 1 72 HIS 72 91 91 HIS HIS A . n A 1 73 PRO 73 92 92 PRO PRO A . n A 1 74 GLY 74 93 93 GLY GLY A . n A 1 75 TYR 75 94 94 TYR TYR A . n A 1 76 SER 76 95 95 SER SER A . n A 1 77 THR 77 96 96 THR THR A . n A 1 78 GLN 78 97 97 GLN GLN A . n A 1 79 THR 79 98 98 THR THR A . n A 1 80 HIS 80 99 99 HIS HIS A . n A 1 81 VAL 81 100 100 VAL VAL A . n A 1 82 ASN 82 101 101 ASN ASN A . n A 1 83 ASP 83 102 102 ASP ASP A . n A 1 84 LEU 84 103 103 LEU LEU A . n A 1 85 MET 85 104 104 MET MET A . n A 1 86 LEU 86 105 105 LEU LEU A . n A 1 87 VAL 87 106 106 VAL VAL A . n A 1 88 LYS 88 107 107 LYS LYS A . n A 1 89 LEU 89 108 108 LEU LEU A . n A 1 90 ASN 90 109 109 ASN ASN A . n A 1 91 SER 91 110 110 SER SER A . n A 1 92 GLN 92 111 111 GLN GLN A . n A 1 93 ALA 93 112 112 ALA ALA A . n A 1 94 ARG 94 113 113 ARG ARG A . n A 1 95 LEU 95 114 114 LEU LEU A . n A 1 96 SER 96 115 115 SER SER A . n A 1 97 SER 97 116 116 SER SER A . n A 1 98 MET 98 117 117 MET MET A . n A 1 99 VAL 99 118 118 VAL VAL A . n A 1 100 LYS 100 119 119 LYS LYS A . n A 1 101 LYS 101 120 120 LYS LYS A . n A 1 102 VAL 102 121 121 VAL VAL A . n A 1 103 ARG 103 122 122 ARG ARG A . n A 1 104 LEU 104 123 123 LEU LEU A . n A 1 105 PRO 105 124 124 PRO PRO A . n A 1 106 SER 106 125 125 SER SER A . n A 1 107 ARG 107 128 128 ARG ARG A . n A 1 108 CYS 108 129 129 CYS CYS A . n A 1 109 GLU 109 130 130 GLU GLU A . n A 1 110 PRO 110 131 131 PRO PRO A . n A 1 111 PRO 111 132 132 PRO PRO A . n A 1 112 GLY 112 133 133 GLY GLY A . n A 1 113 THR 113 134 134 THR THR A . n A 1 114 THR 114 135 135 THR THR A . n A 1 115 CYS 115 136 136 CYS CYS A . n A 1 116 THR 116 137 137 THR THR A . n A 1 117 VAL 117 138 138 VAL VAL A . n A 1 118 SER 118 139 139 SER SER A . n A 1 119 GLY 119 140 140 GLY GLY A . n A 1 120 TRP 120 141 141 TRP TRP A . n A 1 121 GLY 121 142 142 GLY GLY A . n A 1 122 THR 122 143 143 THR THR A . n A 1 123 THR 123 144 144 THR THR A . n A 1 124 THR 124 145 145 THR THR A . n A 1 125 SER 125 146 146 SER SER A . n A 1 126 PRO 126 147 147 PRO PRO A . n A 1 127 ASP 127 148 148 ASP ASP A . n A 1 128 VAL 128 149 149 VAL VAL A . n A 1 129 THR 129 150 150 THR THR A . n A 1 130 PHE 130 151 151 PHE PHE A . n A 1 131 PRO 131 152 152 PRO PRO A . n A 1 132 SER 132 153 153 SER SER A . n A 1 133 ASP 133 154 154 ASP ASP A . n A 1 134 LEU 134 155 155 LEU LEU A . n A 1 135 MET 135 156 156 MET MET A . n A 1 136 CYS 136 157 157 CYS CYS A . n A 1 137 VAL 137 158 158 VAL VAL A . n A 1 138 ASP 138 159 159 ASP ASP A . n A 1 139 VAL 139 160 160 VAL VAL A . n A 1 140 LYS 140 161 161 LYS LYS A . n A 1 141 LEU 141 162 162 LEU LEU A . n A 1 142 ILE 142 163 163 ILE ILE A . n A 1 143 SER 143 164 164 SER SER A . n A 1 144 PRO 144 165 165 PRO PRO A . n A 1 145 GLN 145 166 166 GLN GLN A . n A 1 146 ASP 146 167 167 ASP ASP A . n A 1 147 CYS 147 168 168 CYS CYS A . n A 1 148 THR 148 169 169 THR THR A . n A 1 149 LYS 149 170 170 LYS LYS A . n A 1 150 VAL 150 171 171 VAL VAL A . n A 1 151 TYR 151 172 172 TYR TYR A . n A 1 152 LYS 152 173 173 LYS LYS A . n A 1 153 ASP 153 174 174 ASP ASP A . n A 1 154 LEU 154 175 175 LEU LEU A . n A 1 155 LEU 155 176 176 LEU LEU A . n A 1 156 GLU 156 177 177 GLU GLU A . n A 1 157 ASN 157 178 178 ASN ASN A . n A 1 158 SER 158 179 179 SER SER A . n A 1 159 MET 159 180 180 MET MET A . n A 1 160 LEU 160 181 181 LEU LEU A . n A 1 161 CYS 161 182 182 CYS CYS A . n A 1 162 ALA 162 183 183 ALA ALA A . n A 1 163 GLY 163 184 184 GLY GLY A . n A 1 164 ILE 164 185 185 ILE ILE A . n A 1 165 PRO 165 186 186 PRO PRO A . n A 1 166 ASP 166 186 186 ASP ASP A A n A 1 167 SER 167 186 186 SER SER A B n A 1 168 LYS 168 187 187 LYS LYS A . n A 1 169 LYS 169 188 188 LYS LYS A . n A 1 170 ASN 170 189 189 ASN ASN A . n A 1 171 ALA 171 190 190 ALA ALA A . n A 1 172 CYS 172 191 191 CYS CYS A . n A 1 173 ASN 173 192 192 ASN ASN A . n A 1 174 GLY 174 193 193 GLY GLY A . n A 1 175 ASP 175 194 194 ASP ASP A . n A 1 176 SER 176 195 195 SER SER A . n A 1 177 GLY 177 196 196 GLY GLY A . n A 1 178 GLY 178 197 197 GLY GLY A . n A 1 179 PRO 179 198 198 PRO PRO A . n A 1 180 LEU 180 199 199 LEU LEU A . n A 1 181 VAL 181 200 200 VAL VAL A . n A 1 182 CYS 182 201 201 CYS CYS A . n A 1 183 ARG 183 202 202 ARG ARG A . n A 1 184 GLY 184 207 207 GLY GLY A . n A 1 185 THR 185 208 208 THR THR A . n A 1 186 LEU 186 209 209 LEU LEU A . n A 1 187 GLN 187 210 210 GLN GLN A . n A 1 188 GLY 188 211 211 GLY GLY A . n A 1 189 LEU 189 212 212 LEU LEU A . n A 1 190 VAL 190 213 213 VAL VAL A . n A 1 191 SER 191 214 214 SER SER A . n A 1 192 TRP 192 215 215 TRP TRP A . n A 1 193 GLY 193 216 216 GLY GLY A . n A 1 194 THR 194 217 217 THR THR A . n A 1 195 PHE 195 218 218 PHE PHE A . n A 1 196 PRO 196 219 219 PRO PRO A . n A 1 197 CYS 197 220 220 CYS CYS A . n A 1 198 GLY 198 220 220 GLY GLY A A n A 1 199 GLN 199 221 221 GLN GLN A . n A 1 200 PRO 200 222 222 PRO PRO A . n A 1 201 ASN 201 223 223 ASN ASN A . n A 1 202 ASP 202 224 224 ASP ASP A . n A 1 203 PRO 203 225 225 PRO PRO A . n A 1 204 GLY 204 226 226 GLY GLY A . n A 1 205 VAL 205 227 227 VAL VAL A . n A 1 206 TYR 206 228 228 TYR TYR A . n A 1 207 THR 207 229 229 THR THR A . n A 1 208 GLN 208 230 230 GLN GLN A . n A 1 209 VAL 209 231 231 VAL VAL A . n A 1 210 CYS 210 232 232 CYS CYS A . n A 1 211 LYS 211 233 233 LYS LYS A . n A 1 212 PHE 212 234 234 PHE PHE A . n A 1 213 THR 213 235 235 THR THR A . n A 1 214 LYS 214 236 236 LYS LYS A . n A 1 215 TRP 215 237 237 TRP TRP A . n A 1 216 ILE 216 238 238 ILE ILE A . n A 1 217 ASN 217 239 239 ASN ASN A . n A 1 218 ASP 218 240 240 ASP ASP A . n A 1 219 THR 219 241 241 THR THR A . n A 1 220 MET 220 242 242 MET MET A . n A 1 221 LYS 221 243 243 LYS LYS A . n A 1 222 LYS 222 244 244 LYS LYS A . n A 1 223 HIS 223 245 245 HIS HIS A . n A 1 224 ARG 224 246 246 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8VX 1 301 301 8VX ASB A . C 3 CL 1 302 1 CL CL A . D 3 CL 1 303 2 CL CL A . E 4 HOH 1 401 1 HOH HOH A . E 4 HOH 2 402 8 HOH HOH A . E 4 HOH 3 403 20 HOH HOH A . E 4 HOH 4 404 3 HOH HOH A . E 4 HOH 5 405 24 HOH HOH A . E 4 HOH 6 406 26 HOH HOH A . E 4 HOH 7 407 27 HOH HOH A . E 4 HOH 8 408 6 HOH HOH A . E 4 HOH 9 409 2 HOH HOH A . E 4 HOH 10 410 25 HOH HOH A . E 4 HOH 11 411 13 HOH HOH A . E 4 HOH 12 412 30 HOH HOH A . E 4 HOH 13 413 23 HOH HOH A . E 4 HOH 14 414 17 HOH HOH A . E 4 HOH 15 415 9 HOH HOH A . E 4 HOH 16 416 15 HOH HOH A . E 4 HOH 17 417 32 HOH HOH A . E 4 HOH 18 418 29 HOH HOH A . E 4 HOH 19 419 5 HOH HOH A . E 4 HOH 20 420 16 HOH HOH A . E 4 HOH 21 421 31 HOH HOH A . E 4 HOH 22 422 7 HOH HOH A . E 4 HOH 23 423 18 HOH HOH A . E 4 HOH 24 424 10 HOH HOH A . E 4 HOH 25 425 28 HOH HOH A . E 4 HOH 26 426 4 HOH HOH A . E 4 HOH 27 427 12 HOH HOH A . E 4 HOH 28 428 21 HOH HOH A . E 4 HOH 29 429 14 HOH HOH A . E 4 HOH 30 430 11 HOH HOH A . E 4 HOH 31 431 22 HOH HOH A . E 4 HOH 32 432 19 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 220 ? 1 MORE -13 ? 1 'SSA (A^2)' 10450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-12-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 130 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 131 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 131 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.61 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 10.31 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 173 ? ? 51.73 -124.09 2 1 HIS A 245 ? ? -96.39 39.04 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 431 ? 6.67 . 2 1 O ? A HOH 432 ? 8.78 . # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(R)-2-(6-(5-chloro-2-methoxybenzyl)-3-(2,2-dimethylhydrazono)-7-oxo-1,4-diazepan-1-yl)-N-(3-(methylsulfonyl)phenyl)acetamide' 8VX 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #