data_5YKJ # _entry.id 5YKJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5YKJ WWPDB D_1300005445 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YKJ _pdbx_database_status.recvd_initial_deposition_date 2017-10-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, C.C.' 1 ? 'Yang, J.' 2 ? 'Yang, M.J.' 3 ? 'Liu, L.' 4 ? 'Peng, C.T.' 5 ? 'Li, T.' 6 ? 'He, L.H.' 7 ? 'Song, Y.J.' 8 ? 'Zhu, Y.B.' 9 ? 'Zhao, N.L.' 10 ? 'Zhao, C.' 11 ? 'Bao, R.' 12 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag Y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, C.C.' 1 ? primary 'Yang, J.' 2 ? primary 'Yang, M.J.' 3 ? primary 'Liu, L.' 4 ? primary 'Peng, C.T.' 5 ? primary 'Li, T.' 6 ? primary 'He, L.H.' 7 ? primary 'Song, Y.J.' 8 ? primary 'Zhu, Y.B.' 9 ? primary 'Zhao, N.L.' 10 ? primary 'Zhao, C.' 11 ? primary 'Bao, R.' 12 ? # _cell.entry_id 5YKJ _cell.length_a 84.030 _cell.length_b 84.030 _cell.length_c 62.784 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YKJ _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peroxiredoxin PRX1, mitochondrial' 24156.521 1 1.11.1.15 ? 'UNP residues 49-261' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 229 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prx,1-Cys PRX,Mitochondrial thiol peroxidase,mTPx,Thioredoxin peroxidase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MLRINSDAPNFDADTTVGKINFYDYLGDSWGVLFSHPADFTPV(CSO)TTEVSAFAKLKPEFDKRNVKLIGLSVEDVESH EKWIQDIKEIAKVKNVGFPIIGDTFRNVAFLYDMVDAEGFKNINDGSLKTVRSVFVIDPKKKIRLIFTYPSTVGRNTSEV LRVIDALQLTDKEGVVTPINWQPADDVIIPPSVSNDEAKAKFGQFNEIKPYLRFTKSK ; _entity_poly.pdbx_seq_one_letter_code_can ;MLRINSDAPNFDADTTVGKINFYDYLGDSWGVLFSHPADFTPVCTTEVSAFAKLKPEFDKRNVKLIGLSVEDVESHEKWI QDIKEIAKVKNVGFPIIGDTFRNVAFLYDMVDAEGFKNINDGSLKTVRSVFVIDPKKKIRLIFTYPSTVGRNTSEVLRVI DALQLTDKEGVVTPINWQPADDVIIPPSVSNDEAKAKFGQFNEIKPYLRFTKSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 ARG n 1 4 ILE n 1 5 ASN n 1 6 SER n 1 7 ASP n 1 8 ALA n 1 9 PRO n 1 10 ASN n 1 11 PHE n 1 12 ASP n 1 13 ALA n 1 14 ASP n 1 15 THR n 1 16 THR n 1 17 VAL n 1 18 GLY n 1 19 LYS n 1 20 ILE n 1 21 ASN n 1 22 PHE n 1 23 TYR n 1 24 ASP n 1 25 TYR n 1 26 LEU n 1 27 GLY n 1 28 ASP n 1 29 SER n 1 30 TRP n 1 31 GLY n 1 32 VAL n 1 33 LEU n 1 34 PHE n 1 35 SER n 1 36 HIS n 1 37 PRO n 1 38 ALA n 1 39 ASP n 1 40 PHE n 1 41 THR n 1 42 PRO n 1 43 VAL n 1 44 CSO n 1 45 THR n 1 46 THR n 1 47 GLU n 1 48 VAL n 1 49 SER n 1 50 ALA n 1 51 PHE n 1 52 ALA n 1 53 LYS n 1 54 LEU n 1 55 LYS n 1 56 PRO n 1 57 GLU n 1 58 PHE n 1 59 ASP n 1 60 LYS n 1 61 ARG n 1 62 ASN n 1 63 VAL n 1 64 LYS n 1 65 LEU n 1 66 ILE n 1 67 GLY n 1 68 LEU n 1 69 SER n 1 70 VAL n 1 71 GLU n 1 72 ASP n 1 73 VAL n 1 74 GLU n 1 75 SER n 1 76 HIS n 1 77 GLU n 1 78 LYS n 1 79 TRP n 1 80 ILE n 1 81 GLN n 1 82 ASP n 1 83 ILE n 1 84 LYS n 1 85 GLU n 1 86 ILE n 1 87 ALA n 1 88 LYS n 1 89 VAL n 1 90 LYS n 1 91 ASN n 1 92 VAL n 1 93 GLY n 1 94 PHE n 1 95 PRO n 1 96 ILE n 1 97 ILE n 1 98 GLY n 1 99 ASP n 1 100 THR n 1 101 PHE n 1 102 ARG n 1 103 ASN n 1 104 VAL n 1 105 ALA n 1 106 PHE n 1 107 LEU n 1 108 TYR n 1 109 ASP n 1 110 MET n 1 111 VAL n 1 112 ASP n 1 113 ALA n 1 114 GLU n 1 115 GLY n 1 116 PHE n 1 117 LYS n 1 118 ASN n 1 119 ILE n 1 120 ASN n 1 121 ASP n 1 122 GLY n 1 123 SER n 1 124 LEU n 1 125 LYS n 1 126 THR n 1 127 VAL n 1 128 ARG n 1 129 SER n 1 130 VAL n 1 131 PHE n 1 132 VAL n 1 133 ILE n 1 134 ASP n 1 135 PRO n 1 136 LYS n 1 137 LYS n 1 138 LYS n 1 139 ILE n 1 140 ARG n 1 141 LEU n 1 142 ILE n 1 143 PHE n 1 144 THR n 1 145 TYR n 1 146 PRO n 1 147 SER n 1 148 THR n 1 149 VAL n 1 150 GLY n 1 151 ARG n 1 152 ASN n 1 153 THR n 1 154 SER n 1 155 GLU n 1 156 VAL n 1 157 LEU n 1 158 ARG n 1 159 VAL n 1 160 ILE n 1 161 ASP n 1 162 ALA n 1 163 LEU n 1 164 GLN n 1 165 LEU n 1 166 THR n 1 167 ASP n 1 168 LYS n 1 169 GLU n 1 170 GLY n 1 171 VAL n 1 172 VAL n 1 173 THR n 1 174 PRO n 1 175 ILE n 1 176 ASN n 1 177 TRP n 1 178 GLN n 1 179 PRO n 1 180 ALA n 1 181 ASP n 1 182 ASP n 1 183 VAL n 1 184 ILE n 1 185 ILE n 1 186 PRO n 1 187 PRO n 1 188 SER n 1 189 VAL n 1 190 SER n 1 191 ASN n 1 192 ASP n 1 193 GLU n 1 194 ALA n 1 195 LYS n 1 196 ALA n 1 197 LYS n 1 198 PHE n 1 199 GLY n 1 200 GLN n 1 201 PHE n 1 202 ASN n 1 203 GLU n 1 204 ILE n 1 205 LYS n 1 206 PRO n 1 207 TYR n 1 208 LEU n 1 209 ARG n 1 210 PHE n 1 211 THR n 1 212 LYS n 1 213 SER n 1 214 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 214 _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PRX1, YBL064C, YBL0503, YBL0524' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRX1_YEAST _struct_ref.pdbx_db_accession P34227 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LRINSDAPNFDADTTVGKINFYDYLGDSWGVLFSHPADFTPVCTTEVSAFAKLKPEFDKRNVKLIGLSVEDVESHEKWIQ DIKEIAKVKNVGFPIIGDTFRNVAFLYDMVDAEGFKNINDGSLKTVRSVFVIDPKKKIRLIFTYPSTVGRNTSEVLRVID ALQLTDKEGVVTPINWQPADDVIIPPSVSNDEAKAKFGQFNEIKPYLRFTKSK ; _struct_ref.pdbx_align_begin 49 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5YKJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 214 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P34227 _struct_ref_seq.db_align_beg 49 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 261 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 49 _struct_ref_seq.pdbx_auth_seq_align_end 261 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5YKJ _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P34227 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 48 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CSO 'L-peptide linking' n S-HYDROXYCYSTEINE ? 'C3 H7 N O3 S' 137.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YKJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '23% (W/V) PEG-2000 MME ,100mM Tris base/Hydrochloric acid pH 4.7.' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97022 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97022 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YKJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.53 _reflns.d_resolution_low 43.2 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 34456 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.99 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.161 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.24 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.53 _reflns_shell.d_res_low 1.58 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.87 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3385 _reflns_shell.percent_possible_all 99.91 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 18.3 _reflns_shell.pdbx_Rsym_value 0.739 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YKJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 34452 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.47 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.156 _refine.ls_d_res_high 1.530 _refine.ls_percent_reflns_obs 99.98 _refine.ls_R_factor_obs 0.1793 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1784 _refine.ls_R_factor_R_free 0.1927 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.81 _refine.ls_number_reflns_R_free 2000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.16 _refine.pdbx_overall_phase_error 17.85 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1696 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 229 _refine_hist.number_atoms_total 1932 _refine_hist.d_res_high 1.530 _refine_hist.d_res_low 43.156 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.031 ? ? 1756 'X-RAY DIFFRACTION' ? f_angle_d 1.982 ? ? 2384 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.093 ? ? 650 'X-RAY DIFFRACTION' ? f_chiral_restr 0.154 ? ? 269 'X-RAY DIFFRACTION' ? f_plane_restr 0.009 ? ? 307 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.5303 1.5686 2274 0.3190 100.00 0.3295 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.5686 1.6110 2274 0.2960 100.00 0.2959 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.6110 1.6584 2265 0.2814 100.00 0.2694 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.6584 1.7119 2285 0.2558 100.00 0.3091 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.7119 1.7731 2292 0.2369 100.00 0.2683 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.7731 1.8441 2292 0.2129 100.00 0.2504 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.8441 1.9280 2282 0.1802 100.00 0.2251 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.9280 2.0297 2301 0.1577 100.00 0.1722 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.0297 2.1569 2314 0.1535 100.00 0.1915 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.1569 2.3234 2320 0.1402 100.00 0.1518 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.3234 2.5572 2325 0.1414 100.00 0.1479 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.5572 2.9271 2341 0.1480 100.00 0.1820 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.9271 3.6876 2382 0.1448 100.00 0.1549 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.6876 43.1730 2505 0.1685 100.00 0.1623 . . 154 . . . . # _struct.entry_id 5YKJ _struct.title 'Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems' _struct.pdbx_descriptor 'Aspartokinase (E.C.2.7.2.4)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YKJ _struct_keywords.text 'Saccharomyces cerevisiae, 1-Cys Peroxiredoxin, Thioredoxin, glutathione, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 22 ? GLY A 27 ? PHE A 69 GLY A 74 1 ? 6 HELX_P HELX_P2 AA2 THR A 41 ? LEU A 54 ? THR A 88 LEU A 101 1 ? 14 HELX_P HELX_P3 AA3 LEU A 54 ? LYS A 60 ? LEU A 101 LYS A 107 1 ? 7 HELX_P HELX_P4 AA4 ASP A 72 ? LYS A 88 ? ASP A 119 LYS A 135 1 ? 17 HELX_P HELX_P5 AA5 ARG A 102 ? TYR A 108 ? ARG A 149 TYR A 155 1 ? 7 HELX_P HELX_P6 AA6 ASN A 152 ? GLY A 170 ? ASN A 199 GLY A 217 1 ? 19 HELX_P HELX_P7 AA7 SER A 190 ? GLY A 199 ? SER A 237 GLY A 246 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A VAL 43 C ? ? ? 1_555 A CSO 44 N ? ? A VAL 90 A CSO 91 1_555 ? ? ? ? ? ? ? 1.305 ? covale2 covale both ? A CSO 44 C ? ? ? 1_555 A THR 45 N ? ? A CSO 91 A THR 92 1_555 ? ? ? ? ? ? ? 1.316 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 5 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 12 ? ALA A 13 ? ASP A 59 ALA A 60 AA1 2 ILE A 20 ? ASN A 21 ? ILE A 67 ASN A 68 AA2 1 ILE A 96 ? GLY A 98 ? ILE A 143 GLY A 145 AA2 2 VAL A 63 ? SER A 69 ? VAL A 110 SER A 116 AA2 3 TRP A 30 ? HIS A 36 ? TRP A 77 HIS A 83 AA2 4 SER A 129 ? ILE A 133 ? SER A 176 ILE A 180 AA2 5 ILE A 139 ? THR A 144 ? ILE A 186 THR A 191 AA3 1 VAL A 183 ? ILE A 184 ? VAL A 230 ILE A 231 AA3 2 LEU A 208 ? THR A 211 ? LEU A 255 THR A 258 AA3 3 ASN A 202 ? LYS A 205 ? ASN A 249 LYS A 252 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 13 ? N ALA A 60 O ILE A 20 ? O ILE A 67 AA2 1 2 O ILE A 97 ? O ILE A 144 N GLY A 67 ? N GLY A 114 AA2 2 3 O LYS A 64 ? O LYS A 111 N TRP A 30 ? N TRP A 77 AA2 3 4 N GLY A 31 ? N GLY A 78 O ILE A 133 ? O ILE A 180 AA2 4 5 N VAL A 132 ? N VAL A 179 O ARG A 140 ? O ARG A 187 AA3 1 2 N VAL A 183 ? N VAL A 230 O THR A 211 ? O THR A 258 AA3 2 3 O PHE A 210 ? O PHE A 257 N ASN A 202 ? N ASN A 249 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 301 ? 5 'binding site for residue GOL A 301' AC2 Software A NA 302 ? 1 'binding site for residue NA A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 41 ? THR A 88 . ? 1_555 ? 2 AC1 5 PRO A 42 ? PRO A 89 . ? 1_555 ? 3 AC1 5 VAL A 43 ? VAL A 90 . ? 1_555 ? 4 AC1 5 SER A 147 ? SER A 194 . ? 1_555 ? 5 AC1 5 PRO A 187 ? PRO A 234 . ? 7_555 ? 6 AC2 1 PHE A 201 ? PHE A 248 . ? 1_555 ? # _atom_sites.entry_id 5YKJ _atom_sites.fract_transf_matrix[1][1] 0.011901 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011901 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015928 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 48 48 MET MET A . n A 1 2 LEU 2 49 49 LEU LEU A . n A 1 3 ARG 3 50 50 ARG ARG A . n A 1 4 ILE 4 51 51 ILE ILE A . n A 1 5 ASN 5 52 52 ASN ASN A . n A 1 6 SER 6 53 53 SER SER A . n A 1 7 ASP 7 54 54 ASP ASP A . n A 1 8 ALA 8 55 55 ALA ALA A . n A 1 9 PRO 9 56 56 PRO PRO A . n A 1 10 ASN 10 57 57 ASN ASN A . n A 1 11 PHE 11 58 58 PHE PHE A . n A 1 12 ASP 12 59 59 ASP ASP A . n A 1 13 ALA 13 60 60 ALA ALA A . n A 1 14 ASP 14 61 61 ASP ASP A . n A 1 15 THR 15 62 62 THR THR A . n A 1 16 THR 16 63 63 THR THR A . n A 1 17 VAL 17 64 64 VAL VAL A . n A 1 18 GLY 18 65 65 GLY GLY A . n A 1 19 LYS 19 66 66 LYS LYS A . n A 1 20 ILE 20 67 67 ILE ILE A . n A 1 21 ASN 21 68 68 ASN ASN A . n A 1 22 PHE 22 69 69 PHE PHE A . n A 1 23 TYR 23 70 70 TYR TYR A . n A 1 24 ASP 24 71 71 ASP ASP A . n A 1 25 TYR 25 72 72 TYR TYR A . n A 1 26 LEU 26 73 73 LEU LEU A . n A 1 27 GLY 27 74 74 GLY GLY A . n A 1 28 ASP 28 75 75 ASP ASP A . n A 1 29 SER 29 76 76 SER SER A . n A 1 30 TRP 30 77 77 TRP TRP A . n A 1 31 GLY 31 78 78 GLY GLY A . n A 1 32 VAL 32 79 79 VAL VAL A . n A 1 33 LEU 33 80 80 LEU LEU A . n A 1 34 PHE 34 81 81 PHE PHE A . n A 1 35 SER 35 82 82 SER SER A . n A 1 36 HIS 36 83 83 HIS HIS A . n A 1 37 PRO 37 84 84 PRO PRO A . n A 1 38 ALA 38 85 85 ALA ALA A . n A 1 39 ASP 39 86 86 ASP ASP A . n A 1 40 PHE 40 87 87 PHE PHE A . n A 1 41 THR 41 88 88 THR THR A . n A 1 42 PRO 42 89 89 PRO PRO A . n A 1 43 VAL 43 90 90 VAL VAL A . n A 1 44 CSO 44 91 91 CSO CSO A . n A 1 45 THR 45 92 92 THR THR A . n A 1 46 THR 46 93 93 THR THR A . n A 1 47 GLU 47 94 94 GLU GLU A . n A 1 48 VAL 48 95 95 VAL VAL A . n A 1 49 SER 49 96 96 SER SER A . n A 1 50 ALA 50 97 97 ALA ALA A . n A 1 51 PHE 51 98 98 PHE PHE A . n A 1 52 ALA 52 99 99 ALA ALA A . n A 1 53 LYS 53 100 100 LYS LYS A . n A 1 54 LEU 54 101 101 LEU LEU A . n A 1 55 LYS 55 102 102 LYS LYS A . n A 1 56 PRO 56 103 103 PRO PRO A . n A 1 57 GLU 57 104 104 GLU GLU A . n A 1 58 PHE 58 105 105 PHE PHE A . n A 1 59 ASP 59 106 106 ASP ASP A . n A 1 60 LYS 60 107 107 LYS LYS A . n A 1 61 ARG 61 108 108 ARG ARG A . n A 1 62 ASN 62 109 109 ASN ASN A . n A 1 63 VAL 63 110 110 VAL VAL A . n A 1 64 LYS 64 111 111 LYS LYS A . n A 1 65 LEU 65 112 112 LEU LEU A . n A 1 66 ILE 66 113 113 ILE ILE A . n A 1 67 GLY 67 114 114 GLY GLY A . n A 1 68 LEU 68 115 115 LEU LEU A . n A 1 69 SER 69 116 116 SER SER A . n A 1 70 VAL 70 117 117 VAL VAL A . n A 1 71 GLU 71 118 118 GLU GLU A . n A 1 72 ASP 72 119 119 ASP ASP A . n A 1 73 VAL 73 120 120 VAL VAL A . n A 1 74 GLU 74 121 121 GLU GLU A . n A 1 75 SER 75 122 122 SER SER A . n A 1 76 HIS 76 123 123 HIS HIS A . n A 1 77 GLU 77 124 124 GLU GLU A . n A 1 78 LYS 78 125 125 LYS LYS A . n A 1 79 TRP 79 126 126 TRP TRP A . n A 1 80 ILE 80 127 127 ILE ILE A . n A 1 81 GLN 81 128 128 GLN GLN A . n A 1 82 ASP 82 129 129 ASP ASP A . n A 1 83 ILE 83 130 130 ILE ILE A . n A 1 84 LYS 84 131 131 LYS LYS A . n A 1 85 GLU 85 132 132 GLU GLU A . n A 1 86 ILE 86 133 133 ILE ILE A . n A 1 87 ALA 87 134 134 ALA ALA A . n A 1 88 LYS 88 135 135 LYS LYS A . n A 1 89 VAL 89 136 136 VAL VAL A . n A 1 90 LYS 90 137 137 LYS LYS A . n A 1 91 ASN 91 138 138 ASN ASN A . n A 1 92 VAL 92 139 139 VAL VAL A . n A 1 93 GLY 93 140 140 GLY GLY A . n A 1 94 PHE 94 141 141 PHE PHE A . n A 1 95 PRO 95 142 142 PRO PRO A . n A 1 96 ILE 96 143 143 ILE ILE A . n A 1 97 ILE 97 144 144 ILE ILE A . n A 1 98 GLY 98 145 145 GLY GLY A . n A 1 99 ASP 99 146 146 ASP ASP A . n A 1 100 THR 100 147 147 THR THR A . n A 1 101 PHE 101 148 148 PHE PHE A . n A 1 102 ARG 102 149 149 ARG ARG A . n A 1 103 ASN 103 150 150 ASN ASN A . n A 1 104 VAL 104 151 151 VAL VAL A . n A 1 105 ALA 105 152 152 ALA ALA A . n A 1 106 PHE 106 153 153 PHE PHE A . n A 1 107 LEU 107 154 154 LEU LEU A . n A 1 108 TYR 108 155 155 TYR TYR A . n A 1 109 ASP 109 156 156 ASP ASP A . n A 1 110 MET 110 157 157 MET MET A . n A 1 111 VAL 111 158 158 VAL VAL A . n A 1 112 ASP 112 159 159 ASP ASP A . n A 1 113 ALA 113 160 160 ALA ALA A . n A 1 114 GLU 114 161 161 GLU GLU A . n A 1 115 GLY 115 162 162 GLY GLY A . n A 1 116 PHE 116 163 163 PHE PHE A . n A 1 117 LYS 117 164 164 LYS LYS A . n A 1 118 ASN 118 165 165 ASN ASN A . n A 1 119 ILE 119 166 166 ILE ILE A . n A 1 120 ASN 120 167 167 ASN ASN A . n A 1 121 ASP 121 168 168 ASP ASP A . n A 1 122 GLY 122 169 169 GLY GLY A . n A 1 123 SER 123 170 170 SER SER A . n A 1 124 LEU 124 171 171 LEU LEU A . n A 1 125 LYS 125 172 172 LYS LYS A . n A 1 126 THR 126 173 173 THR THR A . n A 1 127 VAL 127 174 174 VAL VAL A . n A 1 128 ARG 128 175 175 ARG ARG A . n A 1 129 SER 129 176 176 SER SER A . n A 1 130 VAL 130 177 177 VAL VAL A . n A 1 131 PHE 131 178 178 PHE PHE A . n A 1 132 VAL 132 179 179 VAL VAL A . n A 1 133 ILE 133 180 180 ILE ILE A . n A 1 134 ASP 134 181 181 ASP ASP A . n A 1 135 PRO 135 182 182 PRO PRO A . n A 1 136 LYS 136 183 183 LYS LYS A . n A 1 137 LYS 137 184 184 LYS LYS A . n A 1 138 LYS 138 185 185 LYS LYS A . n A 1 139 ILE 139 186 186 ILE ILE A . n A 1 140 ARG 140 187 187 ARG ARG A . n A 1 141 LEU 141 188 188 LEU LEU A . n A 1 142 ILE 142 189 189 ILE ILE A . n A 1 143 PHE 143 190 190 PHE PHE A . n A 1 144 THR 144 191 191 THR THR A . n A 1 145 TYR 145 192 192 TYR TYR A . n A 1 146 PRO 146 193 193 PRO PRO A . n A 1 147 SER 147 194 194 SER SER A . n A 1 148 THR 148 195 195 THR THR A . n A 1 149 VAL 149 196 196 VAL VAL A . n A 1 150 GLY 150 197 197 GLY GLY A . n A 1 151 ARG 151 198 198 ARG ARG A . n A 1 152 ASN 152 199 199 ASN ASN A . n A 1 153 THR 153 200 200 THR THR A . n A 1 154 SER 154 201 201 SER SER A . n A 1 155 GLU 155 202 202 GLU GLU A . n A 1 156 VAL 156 203 203 VAL VAL A . n A 1 157 LEU 157 204 204 LEU LEU A . n A 1 158 ARG 158 205 205 ARG ARG A . n A 1 159 VAL 159 206 206 VAL VAL A . n A 1 160 ILE 160 207 207 ILE ILE A . n A 1 161 ASP 161 208 208 ASP ASP A . n A 1 162 ALA 162 209 209 ALA ALA A . n A 1 163 LEU 163 210 210 LEU LEU A . n A 1 164 GLN 164 211 211 GLN GLN A . n A 1 165 LEU 165 212 212 LEU LEU A . n A 1 166 THR 166 213 213 THR THR A . n A 1 167 ASP 167 214 214 ASP ASP A . n A 1 168 LYS 168 215 215 LYS LYS A . n A 1 169 GLU 169 216 216 GLU GLU A . n A 1 170 GLY 170 217 217 GLY GLY A . n A 1 171 VAL 171 218 218 VAL VAL A . n A 1 172 VAL 172 219 219 VAL VAL A . n A 1 173 THR 173 220 220 THR THR A . n A 1 174 PRO 174 221 221 PRO PRO A . n A 1 175 ILE 175 222 222 ILE ILE A . n A 1 176 ASN 176 223 223 ASN ASN A . n A 1 177 TRP 177 224 224 TRP TRP A . n A 1 178 GLN 178 225 225 GLN GLN A . n A 1 179 PRO 179 226 226 PRO PRO A . n A 1 180 ALA 180 227 227 ALA ALA A . n A 1 181 ASP 181 228 228 ASP ASP A . n A 1 182 ASP 182 229 229 ASP ASP A . n A 1 183 VAL 183 230 230 VAL VAL A . n A 1 184 ILE 184 231 231 ILE ILE A . n A 1 185 ILE 185 232 232 ILE ILE A . n A 1 186 PRO 186 233 233 PRO PRO A . n A 1 187 PRO 187 234 234 PRO PRO A . n A 1 188 SER 188 235 235 SER SER A . n A 1 189 VAL 189 236 236 VAL VAL A . n A 1 190 SER 190 237 237 SER SER A . n A 1 191 ASN 191 238 238 ASN ASN A . n A 1 192 ASP 192 239 239 ASP ASP A . n A 1 193 GLU 193 240 240 GLU GLU A . n A 1 194 ALA 194 241 241 ALA ALA A . n A 1 195 LYS 195 242 242 LYS LYS A . n A 1 196 ALA 196 243 243 ALA ALA A . n A 1 197 LYS 197 244 244 LYS LYS A . n A 1 198 PHE 198 245 245 PHE PHE A . n A 1 199 GLY 199 246 246 GLY GLY A . n A 1 200 GLN 200 247 247 GLN GLN A . n A 1 201 PHE 201 248 248 PHE PHE A . n A 1 202 ASN 202 249 249 ASN ASN A . n A 1 203 GLU 203 250 250 GLU GLU A . n A 1 204 ILE 204 251 251 ILE ILE A . n A 1 205 LYS 205 252 252 LYS LYS A . n A 1 206 PRO 206 253 253 PRO PRO A . n A 1 207 TYR 207 254 254 TYR TYR A . n A 1 208 LEU 208 255 255 LEU LEU A . n A 1 209 ARG 209 256 256 ARG ARG A . n A 1 210 PHE 210 257 257 PHE PHE A . n A 1 211 THR 211 258 258 THR THR A . n A 1 212 LYS 212 259 259 LYS LYS A . n A 1 213 SER 213 260 260 SER SER A . n A 1 214 LYS 214 261 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 301 1 GOL GOL A . C 3 NA 1 302 1 NA NA A . D 4 HOH 1 401 116 HOH HOH A . D 4 HOH 2 402 131 HOH HOH A . D 4 HOH 3 403 53 HOH HOH A . D 4 HOH 4 404 155 HOH HOH A . D 4 HOH 5 405 191 HOH HOH A . D 4 HOH 6 406 172 HOH HOH A . D 4 HOH 7 407 112 HOH HOH A . D 4 HOH 8 408 60 HOH HOH A . D 4 HOH 9 409 171 HOH HOH A . D 4 HOH 10 410 154 HOH HOH A . D 4 HOH 11 411 68 HOH HOH A . D 4 HOH 12 412 46 HOH HOH A . D 4 HOH 13 413 220 HOH HOH A . D 4 HOH 14 414 195 HOH HOH A . D 4 HOH 15 415 118 HOH HOH A . D 4 HOH 16 416 54 HOH HOH A . D 4 HOH 17 417 98 HOH HOH A . D 4 HOH 18 418 32 HOH HOH A . D 4 HOH 19 419 188 HOH HOH A . D 4 HOH 20 420 82 HOH HOH A . D 4 HOH 21 421 204 HOH HOH A . D 4 HOH 22 422 207 HOH HOH A . D 4 HOH 23 423 23 HOH HOH A . D 4 HOH 24 424 136 HOH HOH A . D 4 HOH 25 425 33 HOH HOH A . D 4 HOH 26 426 177 HOH HOH A . D 4 HOH 27 427 7 HOH HOH A . D 4 HOH 28 428 73 HOH HOH A . D 4 HOH 29 429 28 HOH HOH A . D 4 HOH 30 430 142 HOH HOH A . D 4 HOH 31 431 139 HOH HOH A . D 4 HOH 32 432 17 HOH HOH A . D 4 HOH 33 433 128 HOH HOH A . D 4 HOH 34 434 156 HOH HOH A . D 4 HOH 35 435 3 HOH HOH A . D 4 HOH 36 436 105 HOH HOH A . D 4 HOH 37 437 29 HOH HOH A . D 4 HOH 38 438 78 HOH HOH A . D 4 HOH 39 439 50 HOH HOH A . D 4 HOH 40 440 185 HOH HOH A . D 4 HOH 41 441 194 HOH HOH A . D 4 HOH 42 442 119 HOH HOH A . D 4 HOH 43 443 85 HOH HOH A . D 4 HOH 44 444 34 HOH HOH A . D 4 HOH 45 445 25 HOH HOH A . D 4 HOH 46 446 84 HOH HOH A . D 4 HOH 47 447 144 HOH HOH A . D 4 HOH 48 448 79 HOH HOH A . D 4 HOH 49 449 30 HOH HOH A . D 4 HOH 50 450 19 HOH HOH A . D 4 HOH 51 451 127 HOH HOH A . D 4 HOH 52 452 99 HOH HOH A . D 4 HOH 53 453 26 HOH HOH A . D 4 HOH 54 454 153 HOH HOH A . D 4 HOH 55 455 134 HOH HOH A . D 4 HOH 56 456 180 HOH HOH A . D 4 HOH 57 457 4 HOH HOH A . D 4 HOH 58 458 137 HOH HOH A . D 4 HOH 59 459 36 HOH HOH A . D 4 HOH 60 460 45 HOH HOH A . D 4 HOH 61 461 16 HOH HOH A . D 4 HOH 62 462 143 HOH HOH A . D 4 HOH 63 463 219 HOH HOH A . D 4 HOH 64 464 141 HOH HOH A . D 4 HOH 65 465 9 HOH HOH A . D 4 HOH 66 466 217 HOH HOH A . D 4 HOH 67 467 24 HOH HOH A . D 4 HOH 68 468 6 HOH HOH A . D 4 HOH 69 469 62 HOH HOH A . D 4 HOH 70 470 149 HOH HOH A . D 4 HOH 71 471 95 HOH HOH A . D 4 HOH 72 472 63 HOH HOH A . D 4 HOH 73 473 22 HOH HOH A . D 4 HOH 74 474 86 HOH HOH A . D 4 HOH 75 475 130 HOH HOH A . D 4 HOH 76 476 14 HOH HOH A . D 4 HOH 77 477 94 HOH HOH A . D 4 HOH 78 478 176 HOH HOH A . D 4 HOH 79 479 77 HOH HOH A . D 4 HOH 80 480 51 HOH HOH A . D 4 HOH 81 481 101 HOH HOH A . D 4 HOH 82 482 49 HOH HOH A . D 4 HOH 83 483 31 HOH HOH A . D 4 HOH 84 484 218 HOH HOH A . D 4 HOH 85 485 83 HOH HOH A . D 4 HOH 86 486 114 HOH HOH A . D 4 HOH 87 487 132 HOH HOH A . D 4 HOH 88 488 1 HOH HOH A . D 4 HOH 89 489 76 HOH HOH A . D 4 HOH 90 490 165 HOH HOH A . D 4 HOH 91 491 74 HOH HOH A . D 4 HOH 92 492 15 HOH HOH A . D 4 HOH 93 493 10 HOH HOH A . D 4 HOH 94 494 27 HOH HOH A . D 4 HOH 95 495 37 HOH HOH A . D 4 HOH 96 496 72 HOH HOH A . D 4 HOH 97 497 47 HOH HOH A . D 4 HOH 98 498 18 HOH HOH A . D 4 HOH 99 499 184 HOH HOH A . D 4 HOH 100 500 106 HOH HOH A . D 4 HOH 101 501 150 HOH HOH A . D 4 HOH 102 502 196 HOH HOH A . D 4 HOH 103 503 40 HOH HOH A . D 4 HOH 104 504 20 HOH HOH A . D 4 HOH 105 505 111 HOH HOH A . D 4 HOH 106 506 5 HOH HOH A . D 4 HOH 107 507 164 HOH HOH A . D 4 HOH 108 508 57 HOH HOH A . D 4 HOH 109 509 113 HOH HOH A . D 4 HOH 110 510 93 HOH HOH A . D 4 HOH 111 511 58 HOH HOH A . D 4 HOH 112 512 152 HOH HOH A . D 4 HOH 113 513 189 HOH HOH A . D 4 HOH 114 514 39 HOH HOH A . D 4 HOH 115 515 35 HOH HOH A . D 4 HOH 116 516 122 HOH HOH A . D 4 HOH 117 517 124 HOH HOH A . D 4 HOH 118 518 13 HOH HOH A . D 4 HOH 119 519 90 HOH HOH A . D 4 HOH 120 520 52 HOH HOH A . D 4 HOH 121 521 11 HOH HOH A . D 4 HOH 122 522 21 HOH HOH A . D 4 HOH 123 523 133 HOH HOH A . D 4 HOH 124 524 108 HOH HOH A . D 4 HOH 125 525 97 HOH HOH A . D 4 HOH 126 526 48 HOH HOH A . D 4 HOH 127 527 211 HOH HOH A . D 4 HOH 128 528 91 HOH HOH A . D 4 HOH 129 529 59 HOH HOH A . D 4 HOH 130 530 102 HOH HOH A . D 4 HOH 131 531 92 HOH HOH A . D 4 HOH 132 532 71 HOH HOH A . D 4 HOH 133 533 43 HOH HOH A . D 4 HOH 134 534 55 HOH HOH A . D 4 HOH 135 535 222 HOH HOH A . D 4 HOH 136 536 2 HOH HOH A . D 4 HOH 137 537 66 HOH HOH A . D 4 HOH 138 538 38 HOH HOH A . D 4 HOH 139 539 168 HOH HOH A . D 4 HOH 140 540 182 HOH HOH A . D 4 HOH 141 541 44 HOH HOH A . D 4 HOH 142 542 89 HOH HOH A . D 4 HOH 143 543 41 HOH HOH A . D 4 HOH 144 544 161 HOH HOH A . D 4 HOH 145 545 75 HOH HOH A . D 4 HOH 146 546 87 HOH HOH A . D 4 HOH 147 547 125 HOH HOH A . D 4 HOH 148 548 80 HOH HOH A . D 4 HOH 149 549 145 HOH HOH A . D 4 HOH 150 550 64 HOH HOH A . D 4 HOH 151 551 104 HOH HOH A . D 4 HOH 152 552 103 HOH HOH A . D 4 HOH 153 553 110 HOH HOH A . D 4 HOH 154 554 183 HOH HOH A . D 4 HOH 155 555 187 HOH HOH A . D 4 HOH 156 556 140 HOH HOH A . D 4 HOH 157 557 158 HOH HOH A . D 4 HOH 158 558 88 HOH HOH A . D 4 HOH 159 559 42 HOH HOH A . D 4 HOH 160 560 209 HOH HOH A . D 4 HOH 161 561 232 HOH HOH A . D 4 HOH 162 562 65 HOH HOH A . D 4 HOH 163 563 230 HOH HOH A . D 4 HOH 164 564 226 HOH HOH A . D 4 HOH 165 565 228 HOH HOH A . D 4 HOH 166 566 173 HOH HOH A . D 4 HOH 167 567 224 HOH HOH A . D 4 HOH 168 568 160 HOH HOH A . D 4 HOH 169 569 210 HOH HOH A . D 4 HOH 170 570 69 HOH HOH A . D 4 HOH 171 571 56 HOH HOH A . D 4 HOH 172 572 67 HOH HOH A . D 4 HOH 173 573 147 HOH HOH A . D 4 HOH 174 574 186 HOH HOH A . D 4 HOH 175 575 129 HOH HOH A . D 4 HOH 176 576 193 HOH HOH A . D 4 HOH 177 577 70 HOH HOH A . D 4 HOH 178 578 123 HOH HOH A . D 4 HOH 179 579 199 HOH HOH A . D 4 HOH 180 580 201 HOH HOH A . D 4 HOH 181 581 229 HOH HOH A . D 4 HOH 182 582 198 HOH HOH A . D 4 HOH 183 583 221 HOH HOH A . D 4 HOH 184 584 175 HOH HOH A . D 4 HOH 185 585 100 HOH HOH A . D 4 HOH 186 586 202 HOH HOH A . D 4 HOH 187 587 61 HOH HOH A . D 4 HOH 188 588 192 HOH HOH A . D 4 HOH 189 589 203 HOH HOH A . D 4 HOH 190 590 174 HOH HOH A . D 4 HOH 191 591 159 HOH HOH A . D 4 HOH 192 592 178 HOH HOH A . D 4 HOH 193 593 117 HOH HOH A . D 4 HOH 194 594 212 HOH HOH A . D 4 HOH 195 595 121 HOH HOH A . D 4 HOH 196 596 179 HOH HOH A . D 4 HOH 197 597 107 HOH HOH A . D 4 HOH 198 598 225 HOH HOH A . D 4 HOH 199 599 227 HOH HOH A . D 4 HOH 200 600 215 HOH HOH A . D 4 HOH 201 601 234 HOH HOH A . D 4 HOH 202 602 169 HOH HOH A . D 4 HOH 203 603 231 HOH HOH A . D 4 HOH 204 604 138 HOH HOH A . D 4 HOH 205 605 170 HOH HOH A . D 4 HOH 206 606 120 HOH HOH A . D 4 HOH 207 607 135 HOH HOH A . D 4 HOH 208 608 126 HOH HOH A . D 4 HOH 209 609 181 HOH HOH A . D 4 HOH 210 610 216 HOH HOH A . D 4 HOH 211 611 146 HOH HOH A . D 4 HOH 212 612 206 HOH HOH A . D 4 HOH 213 613 115 HOH HOH A . D 4 HOH 214 614 205 HOH HOH A . D 4 HOH 215 615 197 HOH HOH A . D 4 HOH 216 616 213 HOH HOH A . D 4 HOH 217 617 200 HOH HOH A . D 4 HOH 218 618 96 HOH HOH A . D 4 HOH 219 619 166 HOH HOH A . D 4 HOH 220 620 81 HOH HOH A . D 4 HOH 221 621 148 HOH HOH A . D 4 HOH 222 622 167 HOH HOH A . D 4 HOH 223 623 208 HOH HOH A . D 4 HOH 224 624 163 HOH HOH A . D 4 HOH 225 625 223 HOH HOH A . D 4 HOH 226 626 233 HOH HOH A . D 4 HOH 227 627 151 HOH HOH A . D 4 HOH 228 628 190 HOH HOH A . D 4 HOH 229 629 235 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CSO _pdbx_struct_mod_residue.label_seq_id 44 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CSO _pdbx_struct_mod_residue.auth_seq_id 91 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 340 ? 1 MORE -9 ? 1 'SSA (A^2)' 10960 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 591 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-24 2 'Structure model' 1 1 2019-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.unpublished_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 25.5075 8.3635 9.6176 0.0991 0.0746 0.0970 0.0114 -0.0058 0.0196 0.6290 0.6487 0.7104 -0.0050 -0.2466 -0.0506 -0.0306 -0.0696 -0.0866 0.0031 -0.0117 -0.0835 0.1287 0.0440 0.0330 'X-RAY DIFFRACTION' 2 ? refined 22.5696 7.4566 21.2037 0.1057 0.1350 0.1122 0.0256 0.0000 0.0277 1.2001 2.5044 1.0279 0.9753 -0.4071 -0.5241 0.0337 -0.2142 -0.0836 0.1520 -0.1203 0.0809 0.0767 0.0810 0.0569 'X-RAY DIFFRACTION' 3 ? refined 28.0389 24.0468 13.7271 0.1077 0.1355 0.1272 -0.0184 -0.0033 -0.0093 1.6810 2.0587 1.3934 -0.1694 0.3662 0.0197 -0.0572 -0.3307 0.1634 0.2345 -0.0635 0.1594 -0.2818 0.0063 0.0918 'X-RAY DIFFRACTION' 4 ? refined 18.7339 7.5114 -6.1109 0.1142 0.0666 0.0845 0.0019 0.0158 -0.0046 0.5252 0.4258 1.0048 -0.2078 0.2829 -0.0455 0.0434 0.0667 -0.0495 -0.0706 -0.0334 -0.0157 0.1905 0.0405 -0.0009 'X-RAY DIFFRACTION' 5 ? refined 12.1611 3.1524 -24.2970 0.1785 0.0929 0.1131 0.0325 -0.0116 -0.0420 2.8447 3.2439 1.5386 -0.6974 -0.3178 -0.3027 0.0647 0.1493 -0.1726 0.0917 -0.0102 0.0490 0.3793 -0.0064 -0.0953 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 48 through 119 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 120 through 149 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 150 through 169 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 170 through 245 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 246 through 260 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ILE 166 ? ? O A HOH 401 ? ? 1.77 2 1 OE1 A GLU 216 ? ? O A HOH 402 ? ? 2.04 3 1 O A HOH 409 ? ? O A HOH 535 ? ? 2.06 4 1 O A HOH 500 ? ? O A HOH 627 ? ? 2.07 5 1 O A HOH 515 ? ? O A HOH 592 ? ? 2.12 6 1 CG2 A THR 213 ? ? O A HOH 452 ? ? 2.12 7 1 OG1 A THR 88 ? ? O A HOH 403 ? ? 2.12 8 1 O A HOH 404 ? ? O A HOH 530 ? ? 2.13 9 1 O A HOH 436 ? ? O A HOH 610 ? ? 2.14 10 1 O A HOH 410 ? ? O A HOH 570 ? ? 2.15 11 1 O A HOH 509 ? ? O A HOH 572 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 461 ? ? 1_555 O A HOH 461 ? ? 7_555 2.14 2 1 O A HOH 558 ? ? 1_555 O A HOH 558 ? ? 7_555 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 161 ? ? OE2 A GLU 161 ? ? 1.184 1.252 -0.068 0.011 N 2 1 CB A SER 194 ? B OG A SER 194 ? B 1.337 1.418 -0.081 0.013 N 3 1 CD A GLU 202 ? ? OE1 A GLU 202 ? ? 1.180 1.252 -0.072 0.011 N 4 1 CD A GLU 250 ? ? OE2 A GLU 250 ? ? 1.180 1.252 -0.072 0.011 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 149 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 149 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 149 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.35 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.95 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 52 ? ? 81.28 -2.70 2 1 ARG A 175 ? ? -142.15 12.63 3 1 ALA A 227 ? ? 86.87 -6.69 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 629 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.05 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id LYS _pdbx_unobs_or_zero_occ_residues.auth_seq_id 261 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id LYS _pdbx_unobs_or_zero_occ_residues.label_seq_id 214 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'SODIUM ION' NA 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #