data_5YL1 # _entry.id 5YL1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YL1 pdb_00005yl1 10.2210/pdb5yl1/pdb WWPDB D_1300005469 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-12 2 'Structure model' 1 1 2019-02-27 3 'Structure model' 1 2 2019-03-13 4 'Structure model' 1 3 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.page_first' 10 3 'Structure model' '_citation.page_last' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation_author.identifier_ORCID' 14 4 'Structure model' '_database_2.pdbx_DOI' 15 4 'Structure model' '_database_2.pdbx_database_accession' 16 4 'Structure model' '_pdbx_struct_oper_list.name' 17 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 18 4 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YL1 _pdbx_database_status.recvd_initial_deposition_date 2017-10-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, N.C.' 1 ? 'Yoshimura, M.' 2 ? 'Lin, C.C.' 3 ? 'Guan, H.H.' 4 ? 'Chuankhayan, P.' 5 ? 'Chen, C.J.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first 72 _citation.page_last 72 _citation.title 'The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-019-0311-z _citation.pdbx_database_id_PubMed 30820467 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, N.C.' 1 ? primary 'Yoshimura, M.' 2 0000-0002-7466-2192 primary 'Miyazaki, N.' 3 ? primary 'Guan, H.H.' 4 ? primary 'Chuankhayan, P.' 5 ? primary 'Lin, C.C.' 6 ? primary 'Chen, S.K.' 7 ? primary 'Lin, P.J.' 8 ? primary 'Huang, Y.C.' 9 ? primary 'Iwasaki, K.' 10 ? primary 'Nakagawa, A.' 11 0000-0002-1700-7861 primary 'Chan, S.I.' 12 ? primary 'Chen, C.J.' 13 0000-0002-5157-4288 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid protein' 20609.170 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASSFPGTRITGLSSYWERYKWLSAVARYVPAVPNTVACQFVMYI DTDPLDDPSNISDDNQIVRQAVSQAGSNQFNFNTSKTVPLIVRADNQYYYTGVDKQNLRFSLQGILYIIQVTDLINFNGE LITQDLTCGSLFLDWLVNFSIPQIN ; _entity_poly.pdbx_seq_one_letter_code_can ;ISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASSFPGTRITGLSSYWERYKWLSAVARYVPAVPNTVACQFVMYI DTDPLDDPSNISDDNQIVRQAVSQAGSNQFNFNTSKTVPLIVRADNQYYYTGVDKQNLRFSLQGILYIIQVTDLINFNGE LITQDLTCGSLFLDWLVNFSIPQIN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'CALCIUM ION' _pdbx_entity_nonpoly.comp_id CA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 SER n 1 3 ARG n 1 4 LEU n 1 5 GLY n 1 6 PRO n 1 7 ASP n 1 8 SER n 1 9 ASP n 1 10 PHE n 1 11 LEU n 1 12 THR n 1 13 SER n 1 14 VAL n 1 15 VAL n 1 16 ALA n 1 17 LYS n 1 18 ALA n 1 19 SER n 1 20 THR n 1 21 SER n 1 22 ILE n 1 23 VAL n 1 24 THR n 1 25 PRO n 1 26 ALA n 1 27 ASP n 1 28 ARG n 1 29 ILE n 1 30 LEU n 1 31 VAL n 1 32 LYS n 1 33 GLN n 1 34 PRO n 1 35 LEU n 1 36 SER n 1 37 ALA n 1 38 SER n 1 39 SER n 1 40 PHE n 1 41 PRO n 1 42 GLY n 1 43 THR n 1 44 ARG n 1 45 ILE n 1 46 THR n 1 47 GLY n 1 48 LEU n 1 49 SER n 1 50 SER n 1 51 TYR n 1 52 TRP n 1 53 GLU n 1 54 ARG n 1 55 TYR n 1 56 LYS n 1 57 TRP n 1 58 LEU n 1 59 SER n 1 60 ALA n 1 61 VAL n 1 62 ALA n 1 63 ARG n 1 64 TYR n 1 65 VAL n 1 66 PRO n 1 67 ALA n 1 68 VAL n 1 69 PRO n 1 70 ASN n 1 71 THR n 1 72 VAL n 1 73 ALA n 1 74 CYS n 1 75 GLN n 1 76 PHE n 1 77 VAL n 1 78 MET n 1 79 TYR n 1 80 ILE n 1 81 ASP n 1 82 THR n 1 83 ASP n 1 84 PRO n 1 85 LEU n 1 86 ASP n 1 87 ASP n 1 88 PRO n 1 89 SER n 1 90 ASN n 1 91 ILE n 1 92 SER n 1 93 ASP n 1 94 ASP n 1 95 ASN n 1 96 GLN n 1 97 ILE n 1 98 VAL n 1 99 ARG n 1 100 GLN n 1 101 ALA n 1 102 VAL n 1 103 SER n 1 104 GLN n 1 105 ALA n 1 106 GLY n 1 107 SER n 1 108 ASN n 1 109 GLN n 1 110 PHE n 1 111 ASN n 1 112 PHE n 1 113 ASN n 1 114 THR n 1 115 SER n 1 116 LYS n 1 117 THR n 1 118 VAL n 1 119 PRO n 1 120 LEU n 1 121 ILE n 1 122 VAL n 1 123 ARG n 1 124 ALA n 1 125 ASP n 1 126 ASN n 1 127 GLN n 1 128 TYR n 1 129 TYR n 1 130 TYR n 1 131 THR n 1 132 GLY n 1 133 VAL n 1 134 ASP n 1 135 LYS n 1 136 GLN n 1 137 ASN n 1 138 LEU n 1 139 ARG n 1 140 PHE n 1 141 SER n 1 142 LEU n 1 143 GLN n 1 144 GLY n 1 145 ILE n 1 146 LEU n 1 147 TYR n 1 148 ILE n 1 149 ILE n 1 150 GLN n 1 151 VAL n 1 152 THR n 1 153 ASP n 1 154 LEU n 1 155 ILE n 1 156 ASN n 1 157 PHE n 1 158 ASN n 1 159 GLY n 1 160 GLU n 1 161 LEU n 1 162 ILE n 1 163 THR n 1 164 GLN n 1 165 ASP n 1 166 LEU n 1 167 THR n 1 168 CYS n 1 169 GLY n 1 170 SER n 1 171 LEU n 1 172 PHE n 1 173 LEU n 1 174 ASP n 1 175 TRP n 1 176 LEU n 1 177 VAL n 1 178 ASN n 1 179 PHE n 1 180 SER n 1 181 ILE n 1 182 PRO n 1 183 GLN n 1 184 ILE n 1 185 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 185 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Penaeus vannamei nodavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 430911 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 66 66 ILE ILE A . n A 1 2 SER 2 67 67 SER SER A . n A 1 3 ARG 3 68 68 ARG ARG A . n A 1 4 LEU 4 69 69 LEU LEU A . n A 1 5 GLY 5 70 70 GLY GLY A . n A 1 6 PRO 6 71 71 PRO PRO A . n A 1 7 ASP 7 72 72 ASP ASP A . n A 1 8 SER 8 73 73 SER SER A . n A 1 9 ASP 9 74 74 ASP ASP A . n A 1 10 PHE 10 75 75 PHE PHE A . n A 1 11 LEU 11 76 76 LEU LEU A . n A 1 12 THR 12 77 77 THR THR A . n A 1 13 SER 13 78 78 SER SER A . n A 1 14 VAL 14 79 79 VAL VAL A . n A 1 15 VAL 15 80 80 VAL VAL A . n A 1 16 ALA 16 81 81 ALA ALA A . n A 1 17 LYS 17 82 82 LYS LYS A . n A 1 18 ALA 18 83 83 ALA ALA A . n A 1 19 SER 19 84 84 SER SER A . n A 1 20 THR 20 85 85 THR THR A . n A 1 21 SER 21 86 86 SER SER A . n A 1 22 ILE 22 87 87 ILE ILE A . n A 1 23 VAL 23 88 88 VAL VAL A . n A 1 24 THR 24 89 89 THR THR A . n A 1 25 PRO 25 90 90 PRO PRO A . n A 1 26 ALA 26 91 91 ALA ALA A . n A 1 27 ASP 27 92 92 ASP ASP A . n A 1 28 ARG 28 93 93 ARG ARG A . n A 1 29 ILE 29 94 94 ILE ILE A . n A 1 30 LEU 30 95 95 LEU LEU A . n A 1 31 VAL 31 96 96 VAL VAL A . n A 1 32 LYS 32 97 97 LYS LYS A . n A 1 33 GLN 33 98 98 GLN GLN A . n A 1 34 PRO 34 99 99 PRO PRO A . n A 1 35 LEU 35 100 100 LEU LEU A . n A 1 36 SER 36 101 101 SER SER A . n A 1 37 ALA 37 102 102 ALA ALA A . n A 1 38 SER 38 103 103 SER SER A . n A 1 39 SER 39 104 104 SER SER A . n A 1 40 PHE 40 105 105 PHE PHE A . n A 1 41 PRO 41 106 106 PRO PRO A . n A 1 42 GLY 42 107 107 GLY GLY A . n A 1 43 THR 43 108 108 THR THR A . n A 1 44 ARG 44 109 109 ARG ARG A . n A 1 45 ILE 45 110 110 ILE ILE A . n A 1 46 THR 46 111 111 THR THR A . n A 1 47 GLY 47 112 112 GLY GLY A . n A 1 48 LEU 48 113 113 LEU LEU A . n A 1 49 SER 49 114 114 SER SER A . n A 1 50 SER 50 115 115 SER SER A . n A 1 51 TYR 51 116 116 TYR TYR A . n A 1 52 TRP 52 117 117 TRP TRP A . n A 1 53 GLU 53 118 118 GLU GLU A . n A 1 54 ARG 54 119 119 ARG ARG A . n A 1 55 TYR 55 120 120 TYR TYR A . n A 1 56 LYS 56 121 121 LYS LYS A . n A 1 57 TRP 57 122 122 TRP TRP A . n A 1 58 LEU 58 123 123 LEU LEU A . n A 1 59 SER 59 124 124 SER SER A . n A 1 60 ALA 60 125 125 ALA ALA A . n A 1 61 VAL 61 126 126 VAL VAL A . n A 1 62 ALA 62 127 127 ALA ALA A . n A 1 63 ARG 63 128 128 ARG ARG A . n A 1 64 TYR 64 129 129 TYR TYR A . n A 1 65 VAL 65 130 130 VAL VAL A . n A 1 66 PRO 66 131 131 PRO PRO A . n A 1 67 ALA 67 132 132 ALA ALA A . n A 1 68 VAL 68 133 133 VAL VAL A . n A 1 69 PRO 69 134 134 PRO PRO A . n A 1 70 ASN 70 135 135 ASN ASN A . n A 1 71 THR 71 136 136 THR THR A . n A 1 72 VAL 72 137 137 VAL VAL A . n A 1 73 ALA 73 138 138 ALA ALA A . n A 1 74 CYS 74 139 139 CYS CYS A . n A 1 75 GLN 75 140 140 GLN GLN A . n A 1 76 PHE 76 141 141 PHE PHE A . n A 1 77 VAL 77 142 142 VAL VAL A . n A 1 78 MET 78 143 143 MET MET A . n A 1 79 TYR 79 144 144 TYR TYR A . n A 1 80 ILE 80 145 145 ILE ILE A . n A 1 81 ASP 81 146 146 ASP ASP A . n A 1 82 THR 82 147 147 THR THR A . n A 1 83 ASP 83 148 148 ASP ASP A . n A 1 84 PRO 84 149 149 PRO PRO A . n A 1 85 LEU 85 150 150 LEU LEU A . n A 1 86 ASP 86 151 151 ASP ASP A . n A 1 87 ASP 87 152 152 ASP ASP A . n A 1 88 PRO 88 153 153 PRO PRO A . n A 1 89 SER 89 154 154 SER SER A . n A 1 90 ASN 90 155 155 ASN ASN A . n A 1 91 ILE 91 156 156 ILE ILE A . n A 1 92 SER 92 157 157 SER SER A . n A 1 93 ASP 93 158 158 ASP ASP A . n A 1 94 ASP 94 159 159 ASP ASP A . n A 1 95 ASN 95 160 160 ASN ASN A . n A 1 96 GLN 96 161 161 GLN GLN A . n A 1 97 ILE 97 162 162 ILE ILE A . n A 1 98 VAL 98 163 163 VAL VAL A . n A 1 99 ARG 99 164 164 ARG ARG A . n A 1 100 GLN 100 165 165 GLN GLN A . n A 1 101 ALA 101 166 166 ALA ALA A . n A 1 102 VAL 102 167 167 VAL VAL A . n A 1 103 SER 103 168 168 SER SER A . n A 1 104 GLN 104 169 169 GLN GLN A . n A 1 105 ALA 105 170 170 ALA ALA A . n A 1 106 GLY 106 171 171 GLY GLY A . n A 1 107 SER 107 172 172 SER SER A . n A 1 108 ASN 108 173 173 ASN ASN A . n A 1 109 GLN 109 174 174 GLN GLN A . n A 1 110 PHE 110 175 175 PHE PHE A . n A 1 111 ASN 111 176 176 ASN ASN A . n A 1 112 PHE 112 177 177 PHE PHE A . n A 1 113 ASN 113 178 178 ASN ASN A . n A 1 114 THR 114 179 179 THR THR A . n A 1 115 SER 115 180 180 SER SER A . n A 1 116 LYS 116 181 181 LYS LYS A . n A 1 117 THR 117 182 182 THR THR A . n A 1 118 VAL 118 183 183 VAL VAL A . n A 1 119 PRO 119 184 184 PRO PRO A . n A 1 120 LEU 120 185 185 LEU LEU A . n A 1 121 ILE 121 186 186 ILE ILE A . n A 1 122 VAL 122 187 187 VAL VAL A . n A 1 123 ARG 123 188 188 ARG ARG A . n A 1 124 ALA 124 189 189 ALA ALA A . n A 1 125 ASP 125 190 190 ASP ASP A . n A 1 126 ASN 126 191 191 ASN ASN A . n A 1 127 GLN 127 192 192 GLN GLN A . n A 1 128 TYR 128 193 193 TYR TYR A . n A 1 129 TYR 129 194 194 TYR TYR A . n A 1 130 TYR 130 195 195 TYR TYR A . n A 1 131 THR 131 196 196 THR THR A . n A 1 132 GLY 132 197 197 GLY GLY A . n A 1 133 VAL 133 198 198 VAL VAL A . n A 1 134 ASP 134 199 199 ASP ASP A . n A 1 135 LYS 135 200 200 LYS LYS A . n A 1 136 GLN 136 201 201 GLN GLN A . n A 1 137 ASN 137 202 202 ASN ASN A . n A 1 138 LEU 138 203 203 LEU LEU A . n A 1 139 ARG 139 204 204 ARG ARG A . n A 1 140 PHE 140 205 205 PHE PHE A . n A 1 141 SER 141 206 206 SER SER A . n A 1 142 LEU 142 207 207 LEU LEU A . n A 1 143 GLN 143 208 208 GLN GLN A . n A 1 144 GLY 144 209 209 GLY GLY A . n A 1 145 ILE 145 210 210 ILE ILE A . n A 1 146 LEU 146 211 211 LEU LEU A . n A 1 147 TYR 147 212 212 TYR TYR A . n A 1 148 ILE 148 213 213 ILE ILE A . n A 1 149 ILE 149 214 214 ILE ILE A . n A 1 150 GLN 150 215 215 GLN GLN A . n A 1 151 VAL 151 216 216 VAL VAL A . n A 1 152 THR 152 217 217 THR THR A . n A 1 153 ASP 153 218 218 ASP ASP A . n A 1 154 LEU 154 219 219 LEU LEU A . n A 1 155 ILE 155 220 220 ILE ILE A . n A 1 156 ASN 156 221 221 ASN ASN A . n A 1 157 PHE 157 222 222 PHE PHE A . n A 1 158 ASN 158 223 223 ASN ASN A . n A 1 159 GLY 159 224 224 GLY GLY A . n A 1 160 GLU 160 225 225 GLU GLU A . n A 1 161 LEU 161 226 226 LEU LEU A . n A 1 162 ILE 162 227 227 ILE ILE A . n A 1 163 THR 163 228 228 THR THR A . n A 1 164 GLN 164 229 229 GLN GLN A . n A 1 165 ASP 165 230 230 ASP ASP A . n A 1 166 LEU 166 231 231 LEU LEU A . n A 1 167 THR 167 232 232 THR THR A . n A 1 168 CYS 168 233 233 CYS CYS A . n A 1 169 GLY 169 234 234 GLY GLY A . n A 1 170 SER 170 235 235 SER SER A . n A 1 171 LEU 171 236 236 LEU LEU A . n A 1 172 PHE 172 237 237 PHE PHE A . n A 1 173 LEU 173 238 238 LEU LEU A . n A 1 174 ASP 174 239 239 ASP ASP A . n A 1 175 TRP 175 240 240 TRP TRP A . n A 1 176 LEU 176 241 241 LEU LEU A . n A 1 177 VAL 177 242 242 VAL VAL A . n A 1 178 ASN 178 243 243 ASN ASN A . n A 1 179 PHE 179 244 244 PHE PHE A . n A 1 180 SER 180 245 245 SER SER A . n A 1 181 ILE 181 246 246 ILE ILE A . n A 1 182 PRO 182 247 247 PRO PRO A . n A 1 183 GLN 183 248 248 GLN GLN A . n A 1 184 ILE 184 249 249 ILE ILE A . n A 1 185 ASN 185 250 250 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 301 251 CA CA A . C 2 CA 1 302 252 CA CA A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 5YL1 _cell.length_a 196.981 _cell.length_b 200.319 _cell.length_c 419.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YL1 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YL1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Tris 8.0, 20%(w/v) Poly(acrylic acid sodium salt) 5100' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YL1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.12 _reflns.d_resolution_low 37.62 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 292229 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.244 _reflns.pdbx_Rpim_I_all 0.108 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.12 _reflns_shell.d_res_low 3.23 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.963 _reflns_shell.pdbx_Rpim_I_all 0.428 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.646 _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YL1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 274292 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.62 _refine.ls_d_res_high 3.12 _refine.ls_percent_reflns_obs 98.28 _refine.ls_R_factor_obs 0.21959 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21953 _refine.ls_R_factor_R_free 0.22071 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 14413 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.907 _refine.correlation_coeff_Fo_to_Fc_free 0.910 _refine.B_iso_mean 65.435 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] -0.02 _refine.aniso_B[3][3] 0.01 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.052 _refine.pdbx_overall_ESU_R_Free 0.051 _refine.overall_SU_ML 0.283 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 16.916 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1454 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1456 _refine_hist.d_res_high 3.12 _refine_hist.d_res_low 37.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.020 ? 1486 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.020 ? 1398 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.696 1.948 ? 2031 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.159 3.000 ? 3205 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.908 5.000 ? 184 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.119 24.706 ? 68 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.575 15.000 ? 235 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.099 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 238 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1699 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 349 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.894 6.452 ? 739 'X-RAY DIFFRACTION' ? r_mcbond_other 2.855 6.451 ? 738 'X-RAY DIFFRACTION' ? r_mcangle_it 4.159 9.690 ? 922 'X-RAY DIFFRACTION' ? r_mcangle_other 4.157 9.693 ? 923 'X-RAY DIFFRACTION' ? r_scbond_it 3.739 6.694 ? 747 'X-RAY DIFFRACTION' ? r_scbond_other 3.738 6.697 ? 748 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 5.318 9.961 ? 1110 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.221 64.018 ? 6350 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.230 64.018 ? 6351 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.119 _refine_ls_shell.d_res_low 3.199 _refine_ls_shell.number_reflns_R_work 17122 _refine_ls_shell.R_factor_R_work 0.345 _refine_ls_shell.percent_reflns_obs 84.42 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 931 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 -0.000000 0.000000 -0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 generate ? 0.313223 -0.816078 -0.485704 0.755963 0.523816 -0.392604 0.574815 -0.244202 0.780995 10.78738 -58.44395 -40.44540 3 generate ? -0.798005 -0.564479 -0.211071 0.407096 -0.246667 -0.879448 0.444365 -0.787730 0.426638 81.50555 -65.02394 -51.56020 4 generate ? -0.798005 0.407096 0.444365 -0.564479 -0.246667 -0.787730 -0.211071 -0.879448 0.426638 114.42439 -10.64664 -17.98413 5 generate ? 0.313223 0.755963 0.574815 -0.816078 0.523816 -0.244202 -0.485704 -0.392604 0.780995 64.05119 29.54037 13.88183 6 generate ? -0.986957 -0.006135 0.160866 -0.006135 -0.997115 -0.075663 0.160866 -0.075663 0.984072 109.83443 -1.74874 -8.97192 7 generate ? -0.221307 0.762937 0.607413 -0.799195 -0.498821 0.335358 0.558847 -0.411225 0.720128 93.03999 59.52064 -42.61570 8 generate ? 0.856583 0.431911 0.282345 -0.434648 0.309020 0.845924 0.278113 -0.847325 0.452431 21.49657 66.48878 -41.67945 9 generate ? 0.757106 -0.541746 -0.365106 0.583716 0.310000 0.750450 -0.293371 -0.781288 0.550928 -5.92527 9.52596 -7.45705 10 generate ? -0.382265 -0.812473 -0.440184 0.848551 -0.497236 0.180878 -0.365834 -0.304375 0.879501 48.67054 -32.64716 12.75732 11 generate ? -0.999371 -0.035442 -0.001403 -0.035442 0.996244 0.079001 -0.001403 0.079001 -0.996874 102.12416 5.89020 -103.02187 12 generate ? -0.340625 0.797342 0.498218 0.787433 0.531479 -0.312216 -0.513735 0.285965 -0.808888 93.47163 -55.91181 -67.33521 13 generate ? 0.782452 0.573971 0.241509 0.468955 -0.287966 -0.834959 -0.409696 0.766572 -0.494486 23.04677 -65.85152 -56.87416 14 generate ? 0.817805 -0.396864 -0.416766 -0.550751 -0.329646 -0.766816 0.166936 0.856640 -0.488159 -11.82567 -10.19259 -86.09556 15 generate ? -0.283422 -0.773501 -0.566893 -0.862485 0.464040 -0.201957 0.419275 0.431698 -0.798652 37.04685 34.14624 -114.61641 16 generate ? 0.986328 0.041576 -0.159463 0.041576 -0.999130 -0.003338 -0.159463 -0.003338 -0.987198 -7.56659 -0.45346 -94.37021 17 generate ? 0.248709 -0.744201 -0.619927 -0.744201 -0.556474 0.369462 -0.619927 0.369462 -0.692235 7.09299 58.52313 -55.96770 18 generate ? -0.841030 -0.441403 -0.312783 -0.441403 0.225613 0.868483 -0.312783 0.868483 -0.384583 78.34312 68.07468 -56.25018 19 generate ? -0.776906 0.531514 0.337506 0.531514 0.266313 0.804096 0.337506 0.804096 -0.489407 107.71855 15.00127 -94.82727 20 generate ? 0.352463 0.830011 0.432263 0.830011 -0.490619 0.265281 0.432263 0.265281 -0.861844 54.62342 -27.35145 -118.38673 21 generate ? -0.096723 -0.043196 -0.994374 0.993282 0.059580 -0.099205 0.063530 -0.997288 0.037143 4.77945 -55.00573 -52.00150 22 generate ? -0.634531 0.299134 -0.712663 0.299134 -0.755160 -0.583311 -0.712663 -0.583311 0.389691 46.47844 -43.76051 5.46704 23 generate ? -0.382265 0.848551 -0.365834 -0.812473 -0.497236 -0.304375 -0.440184 0.180878 0.879501 50.97487 27.19316 16.10906 24 generate ? 0.311453 0.845779 -0.433191 -0.805336 0.476910 0.352123 0.504411 0.239195 0.829672 12.05482 59.79972 -34.78234 25 generate ? 0.487927 0.294649 -0.821650 0.310681 0.821041 0.478925 0.815723 -0.488952 0.309066 -16.49552 8.99802 -76.87698 26 generate ? -0.064234 0.118903 -0.990826 -0.996651 -0.057995 0.057652 -0.050608 0.991211 0.122230 3.15292 54.87668 -43.61297 27 generate ? -0.499775 0.356665 -0.789313 -0.322877 0.768887 0.551873 0.803726 0.530663 -0.269112 35.58521 45.18312 -107.03281 28 generate ? -0.340625 0.787433 -0.513735 0.797342 0.531479 0.285965 0.498218 -0.312216 -0.808888 41.27313 -25.55738 -118.49243 29 generate ? 0.193276 0.815901 -0.544931 0.815901 -0.442129 -0.372596 -0.544931 -0.372596 -0.751148 12.35617 -59.58385 -62.15504 30 generate ? 0.364095 0.402726 -0.839790 -0.292847 -0.806444 -0.513701 -0.884124 0.432966 -0.175685 -11.20342 -9.87287 -15.87699 31 generate ? 0.099588 -0.118163 0.987988 -0.994629 0.016315 0.102209 -0.028197 -0.992860 -0.115903 97.08949 57.00356 -55.21435 32 generate ? 0.509777 -0.384435 0.769635 -0.240456 0.795281 0.556515 -0.826020 -0.468761 0.312976 65.11012 41.18671 7.19591 33 generate ? 0.311453 -0.805336 0.504411 0.845779 0.476910 0.239195 -0.433191 0.352123 0.829672 61.94899 -30.39502 13.02314 34 generate ? -0.221307 -0.799195 0.558847 0.762937 -0.498821 -0.411225 0.607413 0.335358 0.720128 91.97469 -58.81812 -45.78569 35 generate ? -0.352247 -0.374499 0.857714 -0.374499 -0.783484 -0.495887 0.857714 -0.495887 0.135731 113.69271 -4.80282 -87.95878 36 generate ? 0.061370 0.042456 0.997212 0.997998 -0.017900 -0.060656 0.015275 0.998938 -0.043470 99.37014 -53.18651 -55.53518 37 generate ? 0.624529 -0.271364 0.732342 0.264198 -0.809008 -0.525076 0.734957 0.521409 -0.433555 57.21824 -38.92132 -111.99414 38 generate ? 0.411437 -0.830648 0.375157 -0.830648 -0.511153 -0.220785 0.375157 -0.220785 -0.900284 50.19501 32.44724 -117.00377 39 generate ? -0.283422 -0.862485 0.419275 -0.773501 0.464040 0.431698 -0.566893 -0.201957 -0.798652 88.00632 62.29025 -63.64093 40 generate ? -0.499775 -0.322877 0.803726 0.356665 0.768887 0.530663 -0.789313 0.551873 -0.269112 118.39822 9.36568 -25.65125 41 generate ? -0.096723 0.993282 0.063530 -0.043196 0.059580 -0.997288 -0.994374 -0.099205 0.037143 58.40211 -48.37681 1.22722 42 generate ? 0.757106 0.583716 -0.293371 -0.541746 0.310000 -0.781288 -0.365106 0.750450 0.550928 -3.26208 -11.98914 -5.20381 43 generate ? 0.509777 -0.240456 -0.826020 -0.384435 0.795281 -0.468761 0.769635 0.556515 0.312976 -17.34405 -4.35125 -75.28415 44 generate ? -0.496910 -0.340256 -0.798314 0.211338 0.844782 -0.491609 0.841675 -0.413000 -0.347872 35.61700 -36.01846 -112.16516 45 generate ? -0.871748 0.422235 -0.248542 0.422235 0.390093 -0.818257 -0.248542 -0.818257 -0.518346 82.43071 -63.22775 -64.87853 46 generate ? 0.099588 -0.994629 -0.028197 -0.118163 0.016315 -0.992860 0.987988 0.102209 -0.115903 45.47162 -44.27782 -108.14899 47 generate ? -0.736917 -0.595388 0.320104 -0.595388 0.347434 -0.724433 0.320104 -0.724433 -0.610517 105.81640 -6.34940 -98.77692 48 generate ? -0.496910 0.211338 0.841675 -0.340256 0.844782 -0.413000 -0.798314 -0.491609 -0.347872 119.71711 -3.77755 -28.29252 49 generate ? 0.487927 0.310681 0.815723 0.294649 0.821041 -0.488952 -0.821650 0.478925 0.309066 67.96344 -40.11648 5.89715 50 generate ? 0.856583 -0.434648 0.278113 0.431911 0.309020 -0.847325 0.282345 0.845924 0.452431 22.07721 -65.14703 -43.45687 51 generate ? 0.061370 0.997998 0.015275 0.042456 -0.017900 0.998938 0.997212 -0.060656 -0.043470 47.83003 50.30529 -104.73324 52 generate ? 0.782452 0.468955 -0.409696 0.573971 -0.287966 0.766572 0.241509 -0.834959 -0.494486 -10.45272 11.40699 -88.67282 53 generate ? 0.364095 -0.292847 -0.884124 0.402726 -0.806444 0.432966 -0.839790 -0.513701 -0.175685 -12.84936 3.42419 -17.26956 54 generate ? -0.615546 -0.234623 -0.752366 -0.234623 -0.856815 0.459152 -0.752366 0.459152 0.472361 43.95218 37.38885 10.79965 55 generate ? -0.802641 0.563163 -0.196507 -0.457282 -0.369468 0.808941 0.382963 0.739149 0.554075 81.45410 66.36297 -43.25588 56 generate ? -0.064234 -0.996651 -0.050608 0.118903 -0.057995 0.991211 -0.990826 0.057652 0.122230 52.68824 46.03734 5.29102 57 generate ? -0.802641 -0.457282 0.382963 0.563163 -0.369468 0.739149 -0.196507 0.808941 0.554075 112.29040 10.61955 -13.71046 58 generate ? -0.376961 0.321965 0.868469 0.321965 -0.833619 0.448795 0.868469 0.448795 0.210581 114.86830 8.39262 -85.51776 59 generate ? 0.624529 0.264198 0.734957 -0.271364 -0.809008 0.521409 0.732342 -0.525076 -0.433555 56.85938 42.43409 -110.89564 60 generate ? 0.817805 -0.550751 0.166936 -0.396864 -0.329646 0.856640 -0.416766 -0.766816 -0.488159 18.42998 65.69981 -54.77272 # _struct.entry_id 5YL1 _struct.title 'T=1 subviral particle of Penaeus vannamei nodavirus capsid protein deletion mutant (delta 1-37 & 251-368)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YL1 _struct_keywords.text 'Viral capsid protein, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5H7Q8_9VIRU _struct_ref.pdbx_db_accession A5H7Q8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASSFPGTRITGLSSYWERYKWLSAVARYVPAVPNTVACQFVMYI DTDPLDDPSNISDDNQIVRQAVSQAGSNQFNFNTSKTVPLIVRADNQYYYTGVDKQNLRFSLQGILYIIQVTDLINFNGE LITQDLTCGSLFLDWLVNFSIPQIN ; _struct_ref.pdbx_align_begin 66 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5YL1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 185 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A5H7Q8 _struct_ref_seq.db_align_beg 66 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 250 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 66 _struct_ref_seq.pdbx_auth_seq_align_end 250 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 6 'crystal asymmetric unit, crystal frame' ? 60-meric 60 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C 2 1 A,B,C 3 '(1-5)' A,B,C 4 '(1,2,6,10,23,24)' A,B,C 5 P A,B,C 6 '(X0)(1-60)' A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.99657613 -0.02085953 0.08000563 55.06985 0.01773743 -0.99906063 -0.03953773 -2.02500 0.08075521 -0.03798326 0.99600997 47.29374 X0 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.31322305 -0.81607765 -0.48570422 10.78739 0.75596261 0.52381562 -0.39260378 -58.44395 0.57481463 -0.24420168 0.78099532 -40.44539 3 'point symmetry operation' ? ? -0.79800540 -0.56447877 -0.21107130 81.50555 0.40709554 -0.24666689 -0.87944794 -65.02393 0.44436539 -0.78773039 0.42663830 -51.56019 4 'point symmetry operation' ? ? -0.79800541 0.40709554 0.44436539 114.42439 -0.56447877 -0.24666688 -0.78773039 -10.64663 -0.21107130 -0.87944793 0.42663830 -17.98413 5 'point symmetry operation' ? ? 0.31322304 0.75596260 0.57481463 64.05119 -0.81607766 0.52381563 -0.24420167 29.54037 -0.48570422 -0.39260378 0.78099532 13.88183 6 'point symmetry operation' ? ? -0.98695719 -0.00613469 0.16086600 109.83443 -0.00613469 -0.99711454 -0.07566342 -1.74873 0.16086599 -0.07566341 0.98407174 -8.97192 7 'point symmetry operation' ? ? -0.22130722 0.76293651 0.60741336 93.03999 -0.79919528 -0.49882065 0.33535781 59.52064 0.55884705 -0.41122478 0.72012787 -42.61570 8 'point symmetry operation' ? ? 0.85658304 0.43191057 0.28234508 21.49656 -0.43464757 0.30902042 0.84592427 66.48879 0.27811325 -0.84732499 0.45243053 -41.67945 9 'point symmetry operation' ? ? 0.75710588 -0.54174591 -0.36510554 -5.92526 0.58371589 0.30999977 0.75045047 9.52596 -0.29337084 -0.78128836 0.55092834 -7.45704 10 'point symmetry operation' ? ? -0.38226464 -0.81247277 -0.44018374 48.67054 0.84855142 -0.49723603 0.18087795 -32.64715 -0.36583364 -0.30437528 0.87950068 12.75732 11 'point symmetry operation' ? ? -0.99937077 -0.03544153 -0.00140260 102.12416 -0.03544154 0.99624430 0.07900118 5.89020 -0.00140260 0.07900117 -0.99687354 -103.02187 12 'point symmetry operation' ? ? -0.34062467 0.79734184 0.49821765 93.47163 0.78743337 0.53147915 -0.31221563 -55.91181 -0.51373488 0.28596486 -0.80888847 -67.33520 13 'point symmetry operation' ? ? 0.78245191 0.57397070 0.24150907 23.04676 0.46895454 -0.28796612 -0.83495938 -65.85152 -0.40969579 0.76657234 -0.49448580 -56.87416 14 'point symmetry operation' ? ? 0.81780531 -0.39686362 -0.41676581 -11.82567 -0.55075111 -0.32964599 -0.76681597 -10.19258 0.16693619 0.85664040 -0.48815932 -86.09556 15 'point symmetry operation' ? ? -0.28342167 -0.77350109 -0.56689347 37.04685 -0.86248503 0.46403970 -0.20195729 34.14624 0.41927526 0.43169805 -0.79865202 -114.61641 16 'point symmetry operation' ? ? 0.98632796 0.04157622 -0.15946340 -7.56660 0.04157623 -0.99912976 -0.00333776 -0.45345 -0.15946339 -0.00333776 -0.98719820 -94.37020 17 'point symmetry operation' ? ? 0.24870883 -0.74420070 -0.61992680 7.09299 -0.74420070 -0.55647412 0.36946160 58.52314 -0.61992680 0.36946160 -0.69223471 -55.96770 18 'point symmetry operation' ? ? -0.84102956 -0.44140250 -0.31278284 78.34312 -0.44140251 0.22561259 0.86848304 68.07468 -0.31278285 0.86848304 -0.38458303 -56.25019 19 'point symmetry operation' ? ? -0.77690579 0.53151399 0.33750596 107.71854 0.53151399 0.26631311 0.80409589 15.00127 0.33750596 0.80409589 -0.48940732 -94.82727 20 'point symmetry operation' ? ? 0.35246327 0.83001126 0.43226258 54.62342 0.83001127 -0.49061929 0.26528101 -27.35145 0.43226259 0.26528101 -0.86184398 -118.38673 21 'point symmetry operation' ? ? -0.09672302 -0.04319614 -0.99437354 4.77946 0.99328174 0.05957983 -0.09920501 -55.00572 0.06352988 -0.99728849 0.03714319 -52.00149 22 'point symmetry operation' ? ? -0.63453100 0.29913437 -0.71266333 46.47845 0.29913438 -0.75516015 -0.58331104 -43.76050 -0.71266334 -0.58331103 0.38969116 5.46704 23 'point symmetry operation' ? ? -0.38226465 0.84855140 -0.36583363 50.97487 -0.81247278 -0.49723603 -0.30437529 27.19317 -0.44018374 0.18087796 0.87950068 16.10906 24 'point symmetry operation' ? ? 0.31145252 0.84577930 -0.43319129 12.05482 -0.80533642 0.47690984 0.35212253 59.79972 0.50441113 0.23919528 0.82967164 -34.78235 25 'point symmetry operation' ? ? 0.48792695 0.29464901 -0.82165032 -16.49552 0.31068125 0.82104096 0.47892473 8.99802 0.81572328 -0.48895164 0.30906608 -76.87698 26 'point symmetry operation' ? ? -0.06423441 0.11890256 -0.99082597 3.15292 -0.99665078 -0.05799521 0.05765240 54.87668 -0.05060814 0.99121074 0.12222962 -43.61298 27 'point symmetry operation' ? ? -0.49977507 0.35666465 -0.78931312 35.58521 -0.32287677 0.76888682 0.55187287 45.18312 0.80372600 0.53066316 -0.26911174 -107.03281 28 'point symmetry operation' ? ? -0.34062466 0.78743336 -0.51373488 41.27313 0.79734184 0.53147915 0.28596486 -25.55738 0.49821766 -0.31221563 -0.80888848 -118.49242 29 'point symmetry operation' ? ? 0.19327637 0.81590099 -0.54493102 12.35616 0.81590100 -0.44212887 -0.37259580 -59.58385 -0.54493102 -0.37259579 -0.75114749 -62.15503 30 'point symmetry operation' ? ? 0.36409493 0.40272623 -0.83978953 -11.20342 -0.29284741 -0.80644406 -0.51370066 -9.87286 -0.88412402 0.43296601 -0.17568486 -15.87698 31 'point symmetry operation' ? ? 0.09958780 -0.11816257 0.98798779 97.08949 -0.99462919 0.01631534 0.10220855 57.00357 -0.02819657 -0.99286022 -0.11590313 -55.21435 32 'point symmetry operation' ? ? 0.50977654 -0.38443505 0.76963469 65.11011 -0.24045604 0.79528138 0.55651453 41.18671 -0.82601984 -0.46876136 0.31297607 7.19591 33 'point symmetry operation' ? ? 0.31145252 -0.80533641 0.50441113 61.94900 0.84577931 0.47690983 0.23919527 -30.39502 -0.43319130 0.35212253 0.82967164 13.02314 34 'point symmetry operation' ? ? -0.22130721 -0.79919527 0.55884705 91.97469 0.76293652 -0.49882066 -0.41122479 -58.81811 0.60741336 0.33535781 0.72012787 -45.78569 35 'point symmetry operation' ? ? -0.35224681 -0.37449848 0.85771386 113.69271 -0.37449849 -0.78348371 -0.49588724 -4.80281 0.85771387 -0.49588724 0.13573052 -87.95878 36 'point symmetry operation' ? ? 0.06136963 0.04245615 0.99721173 99.37014 0.99799823 -0.01789996 -0.06065594 -53.18651 0.01527483 0.99893797 -0.04346967 -55.53518 37 'point symmetry operation' ? ? 0.62452953 -0.27136396 0.73234176 57.21823 0.26419843 -0.80900804 -0.52507636 -38.92131 0.73495718 0.52140923 -0.43355548 -111.99414 38 'point symmetry operation' ? ? 0.41143679 -0.83064836 0.37515737 50.19501 -0.83064837 -0.51115295 -0.22078485 32.44725 0.37515739 -0.22078486 -0.90028384 -117.00377 39 'point symmetry operation' ? ? -0.28342167 -0.86248501 0.41927526 88.00632 -0.77350110 0.46403970 0.43169806 62.29025 -0.56689347 -0.20195729 -0.79865201 -63.64093 40 'point symmetry operation' ? ? -0.49977508 -0.32287675 0.80372599 118.39823 0.35666465 0.76888681 0.53066317 9.36568 -0.78931313 0.55187287 -0.26911174 -25.65125 41 'point symmetry operation' ? ? -0.09672303 0.99328173 0.06352988 58.40211 -0.04319613 0.05957983 -0.99728849 -48.37680 -0.99437355 -0.09920500 0.03714320 1.22722 42 'point symmetry operation' ? ? 0.75710588 0.58371588 -0.29337084 -3.26208 -0.54174591 0.30999977 -0.78128837 -11.98913 -0.36510554 0.75045047 0.55092835 -5.20381 43 'point symmetry operation' ? ? 0.50977655 -0.24045604 -0.82601983 -17.34405 -0.38443506 0.79528138 -0.46876136 -4.35125 0.76963470 0.55651452 0.31297606 -75.28415 44 'point symmetry operation' ? ? -0.49691029 -0.34025645 -0.79831429 35.61701 0.21133818 0.84478198 -0.49160918 -36.01846 0.84167472 -0.41299996 -0.34787169 -112.16515 45 'point symmetry operation' ? ? -0.87174764 0.42223543 -0.24854233 82.43071 0.42223543 0.39009342 -0.81825691 -63.22774 -0.24854233 -0.81825691 -0.51834577 -64.87852 46 'point symmetry operation' ? ? 0.09958781 -0.99462918 -0.02819658 45.47162 -0.11816257 0.01631533 -0.99286022 -44.27782 0.98798780 0.10220854 -0.11590313 -108.14899 47 'point symmetry operation' ? ? -0.73691708 -0.59538803 0.32010357 105.81640 -0.59538804 0.34743419 -0.72443258 -6.34939 0.32010358 -0.72443259 -0.61051710 -98.77691 48 'point symmetry operation' ? ? -0.49691030 0.21133818 0.84167471 119.71711 -0.34025645 0.84478198 -0.41299995 -3.77754 -0.79831429 -0.49160918 -0.34787168 -28.29252 49 'point symmetry operation' ? ? 0.48792694 0.31068125 0.81572327 67.96344 0.29464902 0.82104096 -0.48895163 -40.11648 -0.82165033 0.47892473 0.30906609 5.89715 50 'point symmetry operation' ? ? 0.85658305 -0.43464757 0.27811324 22.07721 0.43191058 0.30902041 -0.84732499 -65.14702 0.28234508 0.84592427 0.45243053 -43.45687 51 'point symmetry operation' ? ? 0.06136963 0.99799821 0.01527483 47.83002 0.04245614 -0.01789995 0.99893797 50.30529 0.99721174 -0.06065594 -0.04346968 -104.73324 52 'point symmetry operation' ? ? 0.78245192 0.46895453 -0.40969579 -10.45272 0.57397071 -0.28796611 0.76657234 11.40699 0.24150908 -0.83495937 -0.49448581 -88.67281 53 'point symmetry operation' ? ? 0.36409494 -0.29284742 -0.88412401 -12.84936 0.40272624 -0.80644406 0.43296600 3.42419 -0.83978954 -0.51370066 -0.17568487 -17.26956 54 'point symmetry operation' ? ? -0.61554618 -0.23462323 -0.75236615 43.95218 -0.23462323 -0.85681490 0.45915158 37.38886 -0.75236617 0.45915158 0.47236108 10.79965 55 'point symmetry operation' ? ? -0.80264071 0.56316325 -0.19650710 81.45410 -0.45728239 -0.36946784 0.80894149 66.36297 0.38296306 0.73914861 0.55407456 -43.25588 56 'point symmetry operation' ? ? -0.06423441 -0.99665076 -0.05060814 52.68824 0.11890256 -0.05799521 0.99121074 46.03735 -0.99082599 0.05765240 0.12222962 5.29102 57 'point symmetry operation' ? ? -0.80264071 -0.45728238 0.38296306 112.29040 0.56316325 -0.36946784 0.73914861 10.61955 -0.19650711 0.80894149 0.55407457 -13.71047 58 'point symmetry operation' ? ? -0.37696119 0.32196527 0.86846913 114.86830 0.32196527 -0.83361930 0.44879531 8.39262 0.86846913 0.44879531 0.21058048 -85.51777 59 'point symmetry operation' ? ? 0.62452953 0.26419842 0.73495717 56.85937 -0.27136397 -0.80900804 0.52140924 42.43409 0.73234177 -0.52507636 -0.43355548 -110.89564 60 'point symmetry operation' ? ? 0.81780531 -0.55075111 0.16693619 18.42998 -0.39686362 -0.32964599 0.85664041 65.69981 -0.41676580 -0.76681597 -0.48815932 -54.77272 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 18 ? ILE A 22 ? ALA A 83 ILE A 87 5 ? 5 HELX_P HELX_P2 AA2 THR A 24 ? ASP A 27 ? THR A 89 ASP A 92 5 ? 4 HELX_P HELX_P3 AA3 THR A 43 ? SER A 50 ? THR A 108 SER A 115 1 ? 8 HELX_P HELX_P4 AA4 ASP A 87 ? ILE A 91 ? ASP A 152 ILE A 156 5 ? 5 HELX_P HELX_P5 AA5 ASP A 93 ? SER A 103 ? ASP A 158 SER A 168 1 ? 11 HELX_P HELX_P6 AA6 ASN A 137 ? SER A 141 ? ASN A 202 SER A 206 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 53 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 118 A CA 301 1_555 ? ? ? ? ? ? ? 2.597 ? ? metalc2 metalc ? ? A GLU 53 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 118 A CA 302 1_555 ? ? ? ? ? ? ? 2.824 ? ? metalc3 metalc ? ? A GLN 183 OE1 ? ? ? 1_555 C CA . CA ? ? A GLN 248 A CA 302 1_555 ? ? ? ? ? ? ? 2.098 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id GLU _pdbx_struct_conn_angle.ptnr1_label_seq_id 53 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr1_auth_seq_id 118 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id CA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id CA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id CA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 302 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OE1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id GLN _pdbx_struct_conn_angle.ptnr3_label_seq_id 183 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id GLN _pdbx_struct_conn_angle.ptnr3_auth_seq_id 248 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 72.6 _pdbx_struct_conn_angle.value_esd ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 5 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 70 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 6 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 71 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.35 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 2 ? ALA A 16 ? SER A 67 ALA A 81 AA1 2 LEU A 166 ? PRO A 182 ? LEU A 231 PRO A 247 AA1 3 TRP A 52 ? PRO A 66 ? TRP A 117 PRO A 131 AA1 4 LYS A 116 ? PRO A 119 ? LYS A 181 PRO A 184 AA2 1 SER A 2 ? ALA A 16 ? SER A 67 ALA A 81 AA2 2 LEU A 166 ? PRO A 182 ? LEU A 231 PRO A 247 AA2 3 TRP A 52 ? PRO A 66 ? TRP A 117 PRO A 131 AA2 4 TYR A 129 ? TYR A 130 ? TYR A 194 TYR A 195 AA3 1 ILE A 29 ? PRO A 34 ? ILE A 94 PRO A 99 AA3 2 ILE A 145 ? GLN A 150 ? ILE A 210 GLN A 215 AA3 3 GLN A 75 ? ASP A 81 ? GLN A 140 ASP A 146 AA3 4 ASN A 108 ? ASN A 111 ? ASN A 173 ASN A 176 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASP A 7 ? N ASP A 72 O TRP A 175 ? O TRP A 240 AA1 2 3 O LEU A 176 ? O LEU A 241 N LEU A 58 ? N LEU A 123 AA1 3 4 N ALA A 62 ? N ALA A 127 O VAL A 118 ? O VAL A 183 AA2 1 2 N ASP A 7 ? N ASP A 72 O TRP A 175 ? O TRP A 240 AA2 2 3 O LEU A 176 ? O LEU A 241 N LEU A 58 ? N LEU A 123 AA2 3 4 N TYR A 55 ? N TYR A 120 O TYR A 129 ? O TYR A 194 AA3 1 2 N GLN A 33 ? N GLN A 98 O LEU A 146 ? O LEU A 211 AA3 2 3 O TYR A 147 ? O TYR A 212 N TYR A 79 ? N TYR A 144 AA3 3 4 N MET A 78 ? N MET A 143 O ASN A 108 ? O ASN A 173 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 301 ? 3 'binding site for residue CA A 301' AC2 Software A CA 302 ? 2 'binding site for residue CA A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 53 ? GLU A 118 . ? 1_555 ? 2 AC1 3 THR A 131 ? THR A 196 . ? 1_555 ? 3 AC1 3 ASN A 185 ? ASN A 250 . ? 1_555 ? 4 AC2 2 GLU A 53 ? GLU A 118 . ? 1_555 ? 5 AC2 2 GLN A 183 ? GLN A 248 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 93 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 159 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 188 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 188 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 188 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.21 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.91 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 76 ? ? -94.39 -79.17 2 1 LEU A 100 ? ? -113.16 54.90 3 1 ALA A 132 ? ? -140.25 32.63 4 1 CYS A 139 ? ? -172.47 125.85 5 1 SER A 154 ? ? -44.44 -18.90 6 1 SER A 172 ? ? -48.94 155.79 7 1 PHE A 177 ? ? -67.95 1.28 8 1 ASN A 191 ? ? -107.58 67.03 9 1 LYS A 200 ? ? -104.79 -118.33 10 1 ARG A 204 ? ? -46.31 -19.24 11 1 ILE A 246 ? ? 71.44 103.69 # _pdbx_point_symmetry.entry_id 5YL1 _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 ILE N N N N 138 ILE CA C N S 139 ILE C C N N 140 ILE O O N N 141 ILE CB C N S 142 ILE CG1 C N N 143 ILE CG2 C N N 144 ILE CD1 C N N 145 ILE OXT O N N 146 ILE H H N N 147 ILE H2 H N N 148 ILE HA H N N 149 ILE HB H N N 150 ILE HG12 H N N 151 ILE HG13 H N N 152 ILE HG21 H N N 153 ILE HG22 H N N 154 ILE HG23 H N N 155 ILE HD11 H N N 156 ILE HD12 H N N 157 ILE HD13 H N N 158 ILE HXT H N N 159 LEU N N N N 160 LEU CA C N S 161 LEU C C N N 162 LEU O O N N 163 LEU CB C N N 164 LEU CG C N N 165 LEU CD1 C N N 166 LEU CD2 C N N 167 LEU OXT O N N 168 LEU H H N N 169 LEU H2 H N N 170 LEU HA H N N 171 LEU HB2 H N N 172 LEU HB3 H N N 173 LEU HG H N N 174 LEU HD11 H N N 175 LEU HD12 H N N 176 LEU HD13 H N N 177 LEU HD21 H N N 178 LEU HD22 H N N 179 LEU HD23 H N N 180 LEU HXT H N N 181 LYS N N N N 182 LYS CA C N S 183 LYS C C N N 184 LYS O O N N 185 LYS CB C N N 186 LYS CG C N N 187 LYS CD C N N 188 LYS CE C N N 189 LYS NZ N N N 190 LYS OXT O N N 191 LYS H H N N 192 LYS H2 H N N 193 LYS HA H N N 194 LYS HB2 H N N 195 LYS HB3 H N N 196 LYS HG2 H N N 197 LYS HG3 H N N 198 LYS HD2 H N N 199 LYS HD3 H N N 200 LYS HE2 H N N 201 LYS HE3 H N N 202 LYS HZ1 H N N 203 LYS HZ2 H N N 204 LYS HZ3 H N N 205 LYS HXT H N N 206 MET N N N N 207 MET CA C N S 208 MET C C N N 209 MET O O N N 210 MET CB C N N 211 MET CG C N N 212 MET SD S N N 213 MET CE C N N 214 MET OXT O N N 215 MET H H N N 216 MET H2 H N N 217 MET HA H N N 218 MET HB2 H N N 219 MET HB3 H N N 220 MET HG2 H N N 221 MET HG3 H N N 222 MET HE1 H N N 223 MET HE2 H N N 224 MET HE3 H N N 225 MET HXT H N N 226 PHE N N N N 227 PHE CA C N S 228 PHE C C N N 229 PHE O O N N 230 PHE CB C N N 231 PHE CG C Y N 232 PHE CD1 C Y N 233 PHE CD2 C Y N 234 PHE CE1 C Y N 235 PHE CE2 C Y N 236 PHE CZ C Y N 237 PHE OXT O N N 238 PHE H H N N 239 PHE H2 H N N 240 PHE HA H N N 241 PHE HB2 H N N 242 PHE HB3 H N N 243 PHE HD1 H N N 244 PHE HD2 H N N 245 PHE HE1 H N N 246 PHE HE2 H N N 247 PHE HZ H N N 248 PHE HXT H N N 249 PRO N N N N 250 PRO CA C N S 251 PRO C C N N 252 PRO O O N N 253 PRO CB C N N 254 PRO CG C N N 255 PRO CD C N N 256 PRO OXT O N N 257 PRO H H N N 258 PRO HA H N N 259 PRO HB2 H N N 260 PRO HB3 H N N 261 PRO HG2 H N N 262 PRO HG3 H N N 263 PRO HD2 H N N 264 PRO HD3 H N N 265 PRO HXT H N N 266 SER N N N N 267 SER CA C N S 268 SER C C N N 269 SER O O N N 270 SER CB C N N 271 SER OG O N N 272 SER OXT O N N 273 SER H H N N 274 SER H2 H N N 275 SER HA H N N 276 SER HB2 H N N 277 SER HB3 H N N 278 SER HG H N N 279 SER HXT H N N 280 THR N N N N 281 THR CA C N S 282 THR C C N N 283 THR O O N N 284 THR CB C N R 285 THR OG1 O N N 286 THR CG2 C N N 287 THR OXT O N N 288 THR H H N N 289 THR H2 H N N 290 THR HA H N N 291 THR HB H N N 292 THR HG1 H N N 293 THR HG21 H N N 294 THR HG22 H N N 295 THR HG23 H N N 296 THR HXT H N N 297 TRP N N N N 298 TRP CA C N S 299 TRP C C N N 300 TRP O O N N 301 TRP CB C N N 302 TRP CG C Y N 303 TRP CD1 C Y N 304 TRP CD2 C Y N 305 TRP NE1 N Y N 306 TRP CE2 C Y N 307 TRP CE3 C Y N 308 TRP CZ2 C Y N 309 TRP CZ3 C Y N 310 TRP CH2 C Y N 311 TRP OXT O N N 312 TRP H H N N 313 TRP H2 H N N 314 TRP HA H N N 315 TRP HB2 H N N 316 TRP HB3 H N N 317 TRP HD1 H N N 318 TRP HE1 H N N 319 TRP HE3 H N N 320 TRP HZ2 H N N 321 TRP HZ3 H N N 322 TRP HH2 H N N 323 TRP HXT H N N 324 TYR N N N N 325 TYR CA C N S 326 TYR C C N N 327 TYR O O N N 328 TYR CB C N N 329 TYR CG C Y N 330 TYR CD1 C Y N 331 TYR CD2 C Y N 332 TYR CE1 C Y N 333 TYR CE2 C Y N 334 TYR CZ C Y N 335 TYR OH O N N 336 TYR OXT O N N 337 TYR H H N N 338 TYR H2 H N N 339 TYR HA H N N 340 TYR HB2 H N N 341 TYR HB3 H N N 342 TYR HD1 H N N 343 TYR HD2 H N N 344 TYR HE1 H N N 345 TYR HE2 H N N 346 TYR HH H N N 347 TYR HXT H N N 348 VAL N N N N 349 VAL CA C N S 350 VAL C C N N 351 VAL O O N N 352 VAL CB C N N 353 VAL CG1 C N N 354 VAL CG2 C N N 355 VAL OXT O N N 356 VAL H H N N 357 VAL H2 H N N 358 VAL HA H N N 359 VAL HB H N N 360 VAL HG11 H N N 361 VAL HG12 H N N 362 VAL HG13 H N N 363 VAL HG21 H N N 364 VAL HG22 H N N 365 VAL HG23 H N N 366 VAL HXT H N N 367 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 ILE N CA sing N N 129 ILE N H sing N N 130 ILE N H2 sing N N 131 ILE CA C sing N N 132 ILE CA CB sing N N 133 ILE CA HA sing N N 134 ILE C O doub N N 135 ILE C OXT sing N N 136 ILE CB CG1 sing N N 137 ILE CB CG2 sing N N 138 ILE CB HB sing N N 139 ILE CG1 CD1 sing N N 140 ILE CG1 HG12 sing N N 141 ILE CG1 HG13 sing N N 142 ILE CG2 HG21 sing N N 143 ILE CG2 HG22 sing N N 144 ILE CG2 HG23 sing N N 145 ILE CD1 HD11 sing N N 146 ILE CD1 HD12 sing N N 147 ILE CD1 HD13 sing N N 148 ILE OXT HXT sing N N 149 LEU N CA sing N N 150 LEU N H sing N N 151 LEU N H2 sing N N 152 LEU CA C sing N N 153 LEU CA CB sing N N 154 LEU CA HA sing N N 155 LEU C O doub N N 156 LEU C OXT sing N N 157 LEU CB CG sing N N 158 LEU CB HB2 sing N N 159 LEU CB HB3 sing N N 160 LEU CG CD1 sing N N 161 LEU CG CD2 sing N N 162 LEU CG HG sing N N 163 LEU CD1 HD11 sing N N 164 LEU CD1 HD12 sing N N 165 LEU CD1 HD13 sing N N 166 LEU CD2 HD21 sing N N 167 LEU CD2 HD22 sing N N 168 LEU CD2 HD23 sing N N 169 LEU OXT HXT sing N N 170 LYS N CA sing N N 171 LYS N H sing N N 172 LYS N H2 sing N N 173 LYS CA C sing N N 174 LYS CA CB sing N N 175 LYS CA HA sing N N 176 LYS C O doub N N 177 LYS C OXT sing N N 178 LYS CB CG sing N N 179 LYS CB HB2 sing N N 180 LYS CB HB3 sing N N 181 LYS CG CD sing N N 182 LYS CG HG2 sing N N 183 LYS CG HG3 sing N N 184 LYS CD CE sing N N 185 LYS CD HD2 sing N N 186 LYS CD HD3 sing N N 187 LYS CE NZ sing N N 188 LYS CE HE2 sing N N 189 LYS CE HE3 sing N N 190 LYS NZ HZ1 sing N N 191 LYS NZ HZ2 sing N N 192 LYS NZ HZ3 sing N N 193 LYS OXT HXT sing N N 194 MET N CA sing N N 195 MET N H sing N N 196 MET N H2 sing N N 197 MET CA C sing N N 198 MET CA CB sing N N 199 MET CA HA sing N N 200 MET C O doub N N 201 MET C OXT sing N N 202 MET CB CG sing N N 203 MET CB HB2 sing N N 204 MET CB HB3 sing N N 205 MET CG SD sing N N 206 MET CG HG2 sing N N 207 MET CG HG3 sing N N 208 MET SD CE sing N N 209 MET CE HE1 sing N N 210 MET CE HE2 sing N N 211 MET CE HE3 sing N N 212 MET OXT HXT sing N N 213 PHE N CA sing N N 214 PHE N H sing N N 215 PHE N H2 sing N N 216 PHE CA C sing N N 217 PHE CA CB sing N N 218 PHE CA HA sing N N 219 PHE C O doub N N 220 PHE C OXT sing N N 221 PHE CB CG sing N N 222 PHE CB HB2 sing N N 223 PHE CB HB3 sing N N 224 PHE CG CD1 doub Y N 225 PHE CG CD2 sing Y N 226 PHE CD1 CE1 sing Y N 227 PHE CD1 HD1 sing N N 228 PHE CD2 CE2 doub Y N 229 PHE CD2 HD2 sing N N 230 PHE CE1 CZ doub Y N 231 PHE CE1 HE1 sing N N 232 PHE CE2 CZ sing Y N 233 PHE CE2 HE2 sing N N 234 PHE CZ HZ sing N N 235 PHE OXT HXT sing N N 236 PRO N CA sing N N 237 PRO N CD sing N N 238 PRO N H sing N N 239 PRO CA C sing N N 240 PRO CA CB sing N N 241 PRO CA HA sing N N 242 PRO C O doub N N 243 PRO C OXT sing N N 244 PRO CB CG sing N N 245 PRO CB HB2 sing N N 246 PRO CB HB3 sing N N 247 PRO CG CD sing N N 248 PRO CG HG2 sing N N 249 PRO CG HG3 sing N N 250 PRO CD HD2 sing N N 251 PRO CD HD3 sing N N 252 PRO OXT HXT sing N N 253 SER N CA sing N N 254 SER N H sing N N 255 SER N H2 sing N N 256 SER CA C sing N N 257 SER CA CB sing N N 258 SER CA HA sing N N 259 SER C O doub N N 260 SER C OXT sing N N 261 SER CB OG sing N N 262 SER CB HB2 sing N N 263 SER CB HB3 sing N N 264 SER OG HG sing N N 265 SER OXT HXT sing N N 266 THR N CA sing N N 267 THR N H sing N N 268 THR N H2 sing N N 269 THR CA C sing N N 270 THR CA CB sing N N 271 THR CA HA sing N N 272 THR C O doub N N 273 THR C OXT sing N N 274 THR CB OG1 sing N N 275 THR CB CG2 sing N N 276 THR CB HB sing N N 277 THR OG1 HG1 sing N N 278 THR CG2 HG21 sing N N 279 THR CG2 HG22 sing N N 280 THR CG2 HG23 sing N N 281 THR OXT HXT sing N N 282 TRP N CA sing N N 283 TRP N H sing N N 284 TRP N H2 sing N N 285 TRP CA C sing N N 286 TRP CA CB sing N N 287 TRP CA HA sing N N 288 TRP C O doub N N 289 TRP C OXT sing N N 290 TRP CB CG sing N N 291 TRP CB HB2 sing N N 292 TRP CB HB3 sing N N 293 TRP CG CD1 doub Y N 294 TRP CG CD2 sing Y N 295 TRP CD1 NE1 sing Y N 296 TRP CD1 HD1 sing N N 297 TRP CD2 CE2 doub Y N 298 TRP CD2 CE3 sing Y N 299 TRP NE1 CE2 sing Y N 300 TRP NE1 HE1 sing N N 301 TRP CE2 CZ2 sing Y N 302 TRP CE3 CZ3 doub Y N 303 TRP CE3 HE3 sing N N 304 TRP CZ2 CH2 doub Y N 305 TRP CZ2 HZ2 sing N N 306 TRP CZ3 CH2 sing Y N 307 TRP CZ3 HZ3 sing N N 308 TRP CH2 HH2 sing N N 309 TRP OXT HXT sing N N 310 TYR N CA sing N N 311 TYR N H sing N N 312 TYR N H2 sing N N 313 TYR CA C sing N N 314 TYR CA CB sing N N 315 TYR CA HA sing N N 316 TYR C O doub N N 317 TYR C OXT sing N N 318 TYR CB CG sing N N 319 TYR CB HB2 sing N N 320 TYR CB HB3 sing N N 321 TYR CG CD1 doub Y N 322 TYR CG CD2 sing Y N 323 TYR CD1 CE1 sing Y N 324 TYR CD1 HD1 sing N N 325 TYR CD2 CE2 doub Y N 326 TYR CD2 HD2 sing N N 327 TYR CE1 CZ doub Y N 328 TYR CE1 HE1 sing N N 329 TYR CE2 CZ sing Y N 330 TYR CE2 HE2 sing N N 331 TYR CZ OH sing N N 332 TYR OH HH sing N N 333 TYR OXT HXT sing N N 334 VAL N CA sing N N 335 VAL N H sing N N 336 VAL N H2 sing N N 337 VAL CA C sing N N 338 VAL CA CB sing N N 339 VAL CA HA sing N N 340 VAL C O doub N N 341 VAL C OXT sing N N 342 VAL CB CG1 sing N N 343 VAL CB CG2 sing N N 344 VAL CB HB sing N N 345 VAL CG1 HG11 sing N N 346 VAL CG1 HG12 sing N N 347 VAL CG1 HG13 sing N N 348 VAL CG2 HG21 sing N N 349 VAL CG2 HG22 sing N N 350 VAL CG2 HG23 sing N N 351 VAL OXT HXT sing N N 352 # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number 105-2311-B-213-001-MY3 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5YL1 _atom_sites.fract_transf_matrix[1][1] 0.005077 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004992 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002385 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_