data_5YRF # _entry.id 5YRF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5YRF WWPDB D_1300005767 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YRF _pdbx_database_status.recvd_initial_deposition_date 2017-11-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nakae, S.' 1 ? 'Shionyu, M.' 2 ? 'Ogawa, T.' 3 ? 'Shirai, T.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proteins _citation.journal_id_ASTM PSFGEY _citation.journal_id_CSD 0867 _citation.journal_id_ISSN 1097-0134 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 86 _citation.language ? _citation.page_first 644 _citation.page_last 653 _citation.title 'Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/prot.25491 _citation.pdbx_database_id_PubMed 29524263 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nakae, S.' 1 ? primary 'Shionyu, M.' 2 ? primary 'Ogawa, T.' 3 0000-0001-8700-6330 primary 'Shirai, T.' 4 0000-0002-2506-5738 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YRF _cell.details ? _cell.formula_units_Z ? _cell.length_a 45.490 _cell.length_a_esd ? _cell.length_b 50.440 _cell.length_b_esd ? _cell.length_c 114.990 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat PPL3-A 15754.878 1 ? ? ? ? 2 polymer nat PPL3-A 15722.835 1 ? ? ? ? 3 branched man 'alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 4 non-polymer man alpha-D-glucopyranose 180.156 2 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 6 water nat water 18.015 422 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name trehalose # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EIASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; ;EIASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; A ? 2 'polypeptide(L)' no yes ;(PCA)VASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSG EYITSAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; ;QVASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ILE n 1 3 ALA n 1 4 SER n 1 5 GLU n 1 6 TYR n 1 7 LEU n 1 8 GLY n 1 9 GLY n 1 10 PRO n 1 11 GLY n 1 12 GLY n 1 13 ASP n 1 14 ALA n 1 15 PHE n 1 16 ASP n 1 17 ASP n 1 18 LYS n 1 19 ALA n 1 20 VAL n 1 21 ALA n 1 22 GLN n 1 23 ASN n 1 24 GLY n 1 25 ASP n 1 26 ILE n 1 27 THR n 1 28 ARG n 1 29 ILE n 1 30 GLU n 1 31 MET n 1 32 GLN n 1 33 CYS n 1 34 THR n 1 35 ASP n 1 36 VAL n 1 37 ALA n 1 38 THR n 1 39 TYR n 1 40 ILE n 1 41 LYS n 1 42 LEU n 1 43 ARG n 1 44 TYR n 1 45 GLY n 1 46 LYS n 1 47 VAL n 1 48 ASP n 1 49 SER n 1 50 ARG n 1 51 GLN n 1 52 TRP n 1 53 GLY n 1 54 TRP n 1 55 GLY n 1 56 ASN n 1 57 GLU n 1 58 ASN n 1 59 CYS n 1 60 ILE n 1 61 GLN n 1 62 TRP n 1 63 SER n 1 64 LYS n 1 65 LYS n 1 66 GLY n 1 67 GLU n 1 68 LYS n 1 69 VAL n 1 70 VAL n 1 71 HIS n 1 72 GLU n 1 73 LEU n 1 74 SER n 1 75 SER n 1 76 GLY n 1 77 GLU n 1 78 TYR n 1 79 ILE n 1 80 THR n 1 81 SER n 1 82 ALA n 1 83 ILE n 1 84 VAL n 1 85 THR n 1 86 TYR n 1 87 GLY n 1 88 LYS n 1 89 TYR n 1 90 VAL n 1 91 GLN n 1 92 SER n 1 93 ILE n 1 94 THR n 1 95 PHE n 1 96 LYS n 1 97 THR n 1 98 ASN n 1 99 LYS n 1 100 ARG n 1 101 THR n 1 102 LEU n 1 103 PRO n 1 104 ARG n 1 105 CYS n 1 106 GLY n 1 107 THR n 1 108 SER n 1 109 ALA n 1 110 THR n 1 111 GLU n 1 112 LYS n 1 113 SER n 1 114 VAL n 1 115 THR n 1 116 VAL n 1 117 LEU n 1 118 ILE n 1 119 PRO n 1 120 GLY n 1 121 GLY n 1 122 LEU n 1 123 LYS n 1 124 TYR n 1 125 ILE n 1 126 SER n 1 127 GLY n 1 128 ARG n 1 129 TRP n 1 130 GLY n 1 131 CYS n 1 132 ARG n 1 133 ILE n 1 134 ASP n 1 135 GLY n 1 136 LEU n 1 137 ARG n 1 138 PHE n 1 139 HIS n 1 140 ALA n 1 141 LYS n 1 142 CYS n 2 1 PCA n 2 2 VAL n 2 3 ALA n 2 4 SER n 2 5 GLU n 2 6 TYR n 2 7 LEU n 2 8 GLY n 2 9 GLY n 2 10 PRO n 2 11 GLY n 2 12 GLY n 2 13 ASP n 2 14 ALA n 2 15 PHE n 2 16 ASP n 2 17 ASP n 2 18 LYS n 2 19 ALA n 2 20 VAL n 2 21 ALA n 2 22 GLN n 2 23 ASN n 2 24 GLY n 2 25 ASP n 2 26 ILE n 2 27 THR n 2 28 ARG n 2 29 ILE n 2 30 GLU n 2 31 MET n 2 32 GLN n 2 33 CYS n 2 34 THR n 2 35 ASP n 2 36 VAL n 2 37 ALA n 2 38 THR n 2 39 TYR n 2 40 ILE n 2 41 LYS n 2 42 LEU n 2 43 ARG n 2 44 TYR n 2 45 GLY n 2 46 LYS n 2 47 VAL n 2 48 ASP n 2 49 SER n 2 50 ARG n 2 51 GLN n 2 52 TRP n 2 53 GLY n 2 54 TRP n 2 55 GLY n 2 56 ASN n 2 57 GLU n 2 58 ASN n 2 59 CYS n 2 60 ILE n 2 61 GLN n 2 62 TRP n 2 63 SER n 2 64 LYS n 2 65 LYS n 2 66 GLY n 2 67 GLU n 2 68 LYS n 2 69 VAL n 2 70 VAL n 2 71 HIS n 2 72 GLU n 2 73 LEU n 2 74 SER n 2 75 SER n 2 76 GLY n 2 77 GLU n 2 78 TYR n 2 79 ILE n 2 80 THR n 2 81 SER n 2 82 ALA n 2 83 ILE n 2 84 VAL n 2 85 THR n 2 86 TYR n 2 87 GLY n 2 88 LYS n 2 89 TYR n 2 90 VAL n 2 91 GLN n 2 92 SER n 2 93 ILE n 2 94 THR n 2 95 PHE n 2 96 LYS n 2 97 THR n 2 98 ASN n 2 99 LYS n 2 100 ARG n 2 101 THR n 2 102 LEU n 2 103 PRO n 2 104 ARG n 2 105 CYS n 2 106 GLY n 2 107 THR n 2 108 SER n 2 109 ALA n 2 110 THR n 2 111 GLU n 2 112 LYS n 2 113 SER n 2 114 VAL n 2 115 THR n 2 116 VAL n 2 117 LEU n 2 118 ILE n 2 119 PRO n 2 120 GLY n 2 121 GLY n 2 122 LEU n 2 123 LYS n 2 124 TYR n 2 125 ILE n 2 126 SER n 2 127 GLY n 2 128 ARG n 2 129 TRP n 2 130 GLY n 2 131 CYS n 2 132 ARG n 2 133 ILE n 2 134 ASP n 2 135 GLY n 2 136 LEU n 2 137 ARG n 2 138 PHE n 2 139 HIS n 2 140 ALA n 2 141 LYS n 2 142 CYS n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 142 'Winged pearl oyster' 'Pteria penguin' 113549 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 142 'Winged pearl oyster' 'Pteria penguin' 113549 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP B6F0T7_PTEPN B6F0T7 ? 1 ;QVASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; 20 2 UNP B6F0T7_PTEPN B6F0T7 ? 2 ;QVASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; 20 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YRF A 1 ? 142 ? B6F0T7 20 ? 161 ? 20 161 2 2 5YRF B 1 ? 142 ? B6F0T7 20 ? 161 ? 20 161 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YRF GLU A 1 ? UNP B6F0T7 GLN 20 conflict 20 1 1 5YRF ILE A 2 ? UNP B6F0T7 VAL 21 conflict 21 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YRF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2M ammonium sulfate, 25%(w/v) PEG 3350, 0.1M Tris buffer pH 5.5 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-24 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YRF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 20.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27993 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.7 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.79 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3966 _reflns_shell.percent_possible_all 93.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.122 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YRF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 19.560 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 27844 _refine.ls_number_reflns_R_free 1398 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.26 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1934 _refine.ls_R_factor_R_free 0.2446 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1906 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.22 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.20 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2212 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 422 _refine_hist.number_atoms_total 2689 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 19.560 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 ? 2331 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.150 ? 3157 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 15.498 ? 871 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.360 ? 345 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 390 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7000 1.7607 . . 139 2527 92.00 . . . 0.3319 . 0.2526 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7607 1.8312 . . 129 2584 92.00 . . . 0.3217 . 0.2335 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8312 1.9144 . . 137 2576 92.00 . . . 0.2592 . 0.2168 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9144 2.0153 . . 137 2583 92.00 . . . 0.2851 . 0.1943 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0153 2.1414 . . 129 2598 93.00 . . . 0.2432 . 0.1909 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1414 2.3065 . . 143 2604 92.00 . . . 0.2446 . 0.1830 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3065 2.5382 . . 140 2595 92.00 . . . 0.2579 . 0.1957 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5382 2.9044 . . 127 2612 92.00 . . . 0.2398 . 0.2033 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9044 3.6554 . . 139 2763 96.00 . . . 0.2639 . 0.1701 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6554 19.5617 . . 178 3004 100.00 . . . 0.1945 . 0.1749 . . . . . . . . . . # _struct.entry_id 5YRF _struct.title 'PPL3A-trehalose complex' _struct.pdbx_descriptor PPL3alpha _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YRF _struct_keywords.text 'Lectin, Biomineralization, Post-translational modification, Calcite, Docking simulation, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 6 ? K N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 19 ? GLY A 24 ? ALA A 38 GLY A 43 5 ? 6 HELX_P HELX_P2 AA2 ASN A 56 ? TRP A 62 ? ASN A 75 TRP A 81 5 ? 7 HELX_P HELX_P3 AA3 ASP B 17 ? GLN B 22 ? ASP B 36 GLN B 41 1 ? 6 HELX_P HELX_P4 AA4 ASN B 56 ? TRP B 62 ? ASN B 75 TRP B 81 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 52 A CYS 124 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 131 SG ? ? A CYS 78 A CYS 150 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf3 disulf ? ? A CYS 142 SG ? ? ? 1_555 B CYS 142 SG ? ? A CYS 161 B CYS 161 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf4 disulf ? ? B CYS 33 SG ? ? ? 1_555 B CYS 105 SG ? ? B CYS 52 B CYS 124 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf5 disulf ? ? B CYS 59 SG ? ? ? 1_555 B CYS 131 SG ? ? B CYS 78 B CYS 150 1_555 ? ? ? ? ? ? ? 2.038 ? ? covale1 covale one ? D GLC . C1 ? ? ? 1_555 E GLC . O5 ? ? A GLC 201 A GLC 202 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale2 covale both ? B PCA 1 C ? ? ? 1_555 B VAL 2 N ? ? B PCA 20 B VAL 21 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale3 covale one ? C GLC . C1 ? ? ? 1_555 C GLC . O1 ? ? C GLC 1 C GLC 2 1_555 ? ? ? ? ? ? ? 1.321 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 6 ? AA6 ? 4 ? AA7 ? 3 ? AA8 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 2 ? ALA A 3 ? ILE A 21 ALA A 22 AA1 2 ILE A 133 ? ALA A 140 ? ILE A 152 ALA A 159 AA1 3 LEU A 7 ? GLY A 8 ? LEU A 26 GLY A 27 AA2 1 ILE A 2 ? ALA A 3 ? ILE A 21 ALA A 22 AA2 2 ILE A 133 ? ALA A 140 ? ILE A 152 ALA A 159 AA2 3 LEU A 122 ? TRP A 129 ? LEU A 141 TRP A 148 AA2 4 ASP A 13 ? ASP A 16 ? ASP A 32 ASP A 35 AA3 1 VAL A 47 ? ASP A 48 ? VAL A 66 ASP A 67 AA3 2 ALA A 37 ? TYR A 44 ? ALA A 56 TYR A 63 AA3 3 TRP A 52 ? GLY A 53 ? TRP A 71 GLY A 72 AA4 1 VAL A 47 ? ASP A 48 ? VAL A 66 ASP A 67 AA4 2 ALA A 37 ? TYR A 44 ? ALA A 56 TYR A 63 AA4 3 ILE A 26 ? CYS A 33 ? ILE A 45 CYS A 52 AA4 4 GLU A 67 ? GLU A 72 ? GLU A 86 GLU A 91 AA5 1 VAL A 90 ? THR A 97 ? VAL A 109 THR A 116 AA5 2 ILE A 79 ? TYR A 86 ? ILE A 98 TYR A 105 AA5 3 LYS A 112 ? LEU A 117 ? LYS A 131 LEU A 136 AA5 4 LYS B 112 ? LEU B 117 ? LYS B 131 LEU B 136 AA5 5 ILE B 79 ? TYR B 86 ? ILE B 98 TYR B 105 AA5 6 VAL B 90 ? THR B 97 ? VAL B 109 THR B 116 AA6 1 LEU B 7 ? GLY B 8 ? LEU B 26 GLY B 27 AA6 2 ILE B 133 ? HIS B 139 ? ILE B 152 HIS B 158 AA6 3 TYR B 124 ? TRP B 129 ? TYR B 143 TRP B 148 AA6 4 ASP B 13 ? ASP B 16 ? ASP B 32 ASP B 35 AA7 1 VAL B 47 ? ASP B 48 ? VAL B 66 ASP B 67 AA7 2 ALA B 37 ? TYR B 44 ? ALA B 56 TYR B 63 AA7 3 TRP B 52 ? GLY B 53 ? TRP B 71 GLY B 72 AA8 1 VAL B 47 ? ASP B 48 ? VAL B 66 ASP B 67 AA8 2 ALA B 37 ? TYR B 44 ? ALA B 56 TYR B 63 AA8 3 ILE B 26 ? CYS B 33 ? ILE B 45 CYS B 52 AA8 4 GLU B 67 ? GLU B 72 ? GLU B 86 GLU B 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 2 ? N ILE A 21 O ALA A 140 ? O ALA A 159 AA1 2 3 O LEU A 136 ? O LEU A 155 N LEU A 7 ? N LEU A 26 AA2 1 2 N ILE A 2 ? N ILE A 21 O ALA A 140 ? O ALA A 159 AA2 2 3 O HIS A 139 ? O HIS A 158 N LYS A 123 ? N LYS A 142 AA2 3 4 O GLY A 127 ? O GLY A 146 N PHE A 15 ? N PHE A 34 AA3 1 2 O VAL A 47 ? O VAL A 66 N TYR A 44 ? N TYR A 63 AA3 2 3 N ILE A 40 ? N ILE A 59 O TRP A 52 ? O TRP A 71 AA4 1 2 O VAL A 47 ? O VAL A 66 N TYR A 44 ? N TYR A 63 AA4 2 3 O LYS A 41 ? O LYS A 60 N GLU A 30 ? N GLU A 49 AA4 3 4 N MET A 31 ? N MET A 50 O VAL A 69 ? O VAL A 88 AA5 1 2 O GLN A 91 ? O GLN A 110 N THR A 85 ? N THR A 104 AA5 2 3 N ALA A 82 ? N ALA A 101 O VAL A 116 ? O VAL A 135 AA5 3 4 N THR A 115 ? N THR A 134 O LEU B 117 ? O LEU B 136 AA5 4 5 O VAL B 116 ? O VAL B 135 N ALA B 82 ? N ALA B 101 AA5 5 6 N THR B 85 ? N THR B 104 O GLN B 91 ? O GLN B 110 AA6 1 2 N LEU B 7 ? N LEU B 26 O LEU B 136 ? O LEU B 155 AA6 2 3 O ARG B 137 ? O ARG B 156 N SER B 126 ? N SER B 145 AA6 3 4 O GLY B 127 ? O GLY B 146 N PHE B 15 ? N PHE B 34 AA7 1 2 O VAL B 47 ? O VAL B 66 N TYR B 44 ? N TYR B 63 AA7 2 3 N ILE B 40 ? N ILE B 59 O TRP B 52 ? O TRP B 71 AA8 1 2 O VAL B 47 ? O VAL B 66 N TYR B 44 ? N TYR B 63 AA8 2 3 O LYS B 41 ? O LYS B 60 N GLU B 30 ? N GLU B 49 AA8 3 4 N MET B 31 ? N MET B 50 O VAL B 69 ? O VAL B 88 # _atom_sites.entry_id 5YRF _atom_sites.fract_transf_matrix[1][1] 0.021983 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019826 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008696 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 20 20 GLU GLU A . n A 1 2 ILE 2 21 21 ILE ILE A . n A 1 3 ALA 3 22 22 ALA ALA A . n A 1 4 SER 4 23 23 SER SER A . n A 1 5 GLU 5 24 24 GLU GLU A . n A 1 6 TYR 6 25 25 TYR TYR A . n A 1 7 LEU 7 26 26 LEU LEU A . n A 1 8 GLY 8 27 27 GLY GLY A . n A 1 9 GLY 9 28 28 GLY GLY A . n A 1 10 PRO 10 29 29 PRO PRO A . n A 1 11 GLY 11 30 30 GLY GLY A . n A 1 12 GLY 12 31 31 GLY GLY A . n A 1 13 ASP 13 32 32 ASP ASP A . n A 1 14 ALA 14 33 33 ALA ALA A . n A 1 15 PHE 15 34 34 PHE PHE A . n A 1 16 ASP 16 35 35 ASP ASP A . n A 1 17 ASP 17 36 36 ASP ASP A . n A 1 18 LYS 18 37 37 LYS LYS A . n A 1 19 ALA 19 38 38 ALA ALA A . n A 1 20 VAL 20 39 39 VAL VAL A . n A 1 21 ALA 21 40 40 ALA ALA A . n A 1 22 GLN 22 41 41 GLN GLN A . n A 1 23 ASN 23 42 42 ASN ASN A . n A 1 24 GLY 24 43 43 GLY GLY A . n A 1 25 ASP 25 44 44 ASP ASP A . n A 1 26 ILE 26 45 45 ILE ILE A . n A 1 27 THR 27 46 46 THR THR A . n A 1 28 ARG 28 47 47 ARG ARG A . n A 1 29 ILE 29 48 48 ILE ILE A . n A 1 30 GLU 30 49 49 GLU GLU A . n A 1 31 MET 31 50 50 MET MET A . n A 1 32 GLN 32 51 51 GLN GLN A . n A 1 33 CYS 33 52 52 CYS CYS A . n A 1 34 THR 34 53 53 THR THR A . n A 1 35 ASP 35 54 54 ASP ASP A . n A 1 36 VAL 36 55 55 VAL VAL A . n A 1 37 ALA 37 56 56 ALA ALA A . n A 1 38 THR 38 57 57 THR THR A . n A 1 39 TYR 39 58 58 TYR TYR A . n A 1 40 ILE 40 59 59 ILE ILE A . n A 1 41 LYS 41 60 60 LYS LYS A . n A 1 42 LEU 42 61 61 LEU LEU A . n A 1 43 ARG 43 62 62 ARG ARG A . n A 1 44 TYR 44 63 63 TYR TYR A . n A 1 45 GLY 45 64 64 GLY GLY A . n A 1 46 LYS 46 65 65 LYS LYS A . n A 1 47 VAL 47 66 66 VAL VAL A . n A 1 48 ASP 48 67 67 ASP ASP A . n A 1 49 SER 49 68 68 SER SER A . n A 1 50 ARG 50 69 69 ARG ARG A . n A 1 51 GLN 51 70 70 GLN GLN A . n A 1 52 TRP 52 71 71 TRP TRP A . n A 1 53 GLY 53 72 72 GLY GLY A . n A 1 54 TRP 54 73 73 TRP TRP A . n A 1 55 GLY 55 74 74 GLY ALA A . n A 1 56 ASN 56 75 75 ASN ASN A . n A 1 57 GLU 57 76 76 GLU GLU A . n A 1 58 ASN 58 77 77 ASN ASN A . n A 1 59 CYS 59 78 78 CYS CYS A . n A 1 60 ILE 60 79 79 ILE ILE A . n A 1 61 GLN 61 80 80 GLN GLN A . n A 1 62 TRP 62 81 81 TRP TRP A . n A 1 63 SER 63 82 82 SER SER A . n A 1 64 LYS 64 83 83 LYS LYS A . n A 1 65 LYS 65 84 84 LYS LYS A . n A 1 66 GLY 66 85 85 GLY GLY A . n A 1 67 GLU 67 86 86 GLU GLU A . n A 1 68 LYS 68 87 87 LYS LYS A . n A 1 69 VAL 69 88 88 VAL VAL A . n A 1 70 VAL 70 89 89 VAL VAL A . n A 1 71 HIS 71 90 90 HIS HIS A . n A 1 72 GLU 72 91 91 GLU GLU A . n A 1 73 LEU 73 92 92 LEU LEU A . n A 1 74 SER 74 93 93 SER SER A . n A 1 75 SER 75 94 94 SER SER A . n A 1 76 GLY 76 95 95 GLY GLY A . n A 1 77 GLU 77 96 96 GLU GLU A . n A 1 78 TYR 78 97 97 TYR TYR A . n A 1 79 ILE 79 98 98 ILE ILE A . n A 1 80 THR 80 99 99 THR THR A . n A 1 81 SER 81 100 100 SER SER A . n A 1 82 ALA 82 101 101 ALA ALA A . n A 1 83 ILE 83 102 102 ILE ILE A . n A 1 84 VAL 84 103 103 VAL VAL A . n A 1 85 THR 85 104 104 THR THR A . n A 1 86 TYR 86 105 105 TYR TYR A . n A 1 87 GLY 87 106 106 GLY GLY A . n A 1 88 LYS 88 107 107 LYS LYS A . n A 1 89 TYR 89 108 108 TYR TYR A . n A 1 90 VAL 90 109 109 VAL VAL A . n A 1 91 GLN 91 110 110 GLN GLN A . n A 1 92 SER 92 111 111 SER SER A . n A 1 93 ILE 93 112 112 ILE ILE A . n A 1 94 THR 94 113 113 THR THR A . n A 1 95 PHE 95 114 114 PHE PHE A . n A 1 96 LYS 96 115 115 LYS LYS A . n A 1 97 THR 97 116 116 THR THR A . n A 1 98 ASN 98 117 117 ASN ASN A . n A 1 99 LYS 99 118 118 LYS LYS A . n A 1 100 ARG 100 119 119 ARG ARG A . n A 1 101 THR 101 120 120 THR THR A . n A 1 102 LEU 102 121 121 LEU LEU A . n A 1 103 PRO 103 122 122 PRO PRO A . n A 1 104 ARG 104 123 123 ARG ARG A . n A 1 105 CYS 105 124 124 CYS CYS A . n A 1 106 GLY 106 125 125 GLY GLY A . n A 1 107 THR 107 126 126 THR THR A . n A 1 108 SER 108 127 127 SER SER A . n A 1 109 ALA 109 128 128 ALA ALA A . n A 1 110 THR 110 129 129 THR THR A . n A 1 111 GLU 111 130 130 GLU GLU A . n A 1 112 LYS 112 131 131 LYS LYS A . n A 1 113 SER 113 132 132 SER SER A . n A 1 114 VAL 114 133 133 VAL VAL A . n A 1 115 THR 115 134 134 THR THR A . n A 1 116 VAL 116 135 135 VAL VAL A . n A 1 117 LEU 117 136 136 LEU LEU A . n A 1 118 ILE 118 137 137 ILE ILE A . n A 1 119 PRO 119 138 138 PRO PRO A . n A 1 120 GLY 120 139 139 GLY GLY A . n A 1 121 GLY 121 140 140 GLY GLY A . n A 1 122 LEU 122 141 141 LEU LEU A . n A 1 123 LYS 123 142 142 LYS LYS A . n A 1 124 TYR 124 143 143 TYR TYR A . n A 1 125 ILE 125 144 144 ILE ILE A . n A 1 126 SER 126 145 145 SER SER A . n A 1 127 GLY 127 146 146 GLY GLY A . n A 1 128 ARG 128 147 147 ARG ARG A . n A 1 129 TRP 129 148 148 TRP TRP A . n A 1 130 GLY 130 149 149 GLY GLY A . n A 1 131 CYS 131 150 150 CYS CYS A . n A 1 132 ARG 132 151 151 ARG ARG A . n A 1 133 ILE 133 152 152 ILE ILE A . n A 1 134 ASP 134 153 153 ASP ASP A . n A 1 135 GLY 135 154 154 GLY GLY A . n A 1 136 LEU 136 155 155 LEU LEU A . n A 1 137 ARG 137 156 156 ARG ARG A . n A 1 138 PHE 138 157 157 PHE PHE A . n A 1 139 HIS 139 158 158 HIS HIS A . n A 1 140 ALA 140 159 159 ALA ALA A . n A 1 141 LYS 141 160 160 LYS LYS A . n A 1 142 CYS 142 161 161 CYS CYS A . n B 2 1 PCA 1 20 20 PCA PCA B . n B 2 2 VAL 2 21 21 VAL VAL B . n B 2 3 ALA 3 22 22 ALA ALA B . n B 2 4 SER 4 23 23 SER SER B . n B 2 5 GLU 5 24 24 GLU GLU B . n B 2 6 TYR 6 25 25 TYR TYR B . n B 2 7 LEU 7 26 26 LEU LEU B . n B 2 8 GLY 8 27 27 GLY GLY B . n B 2 9 GLY 9 28 28 GLY GLY B . n B 2 10 PRO 10 29 29 PRO PRO B . n B 2 11 GLY 11 30 30 GLY GLY B . n B 2 12 GLY 12 31 31 GLY GLY B . n B 2 13 ASP 13 32 32 ASP ASP B . n B 2 14 ALA 14 33 33 ALA ALA B . n B 2 15 PHE 15 34 34 PHE PHE B . n B 2 16 ASP 16 35 35 ASP ASP B . n B 2 17 ASP 17 36 36 ASP ASP B . n B 2 18 LYS 18 37 37 LYS LYS B . n B 2 19 ALA 19 38 38 ALA ALA B . n B 2 20 VAL 20 39 39 VAL VAL B . n B 2 21 ALA 21 40 40 ALA ALA B . n B 2 22 GLN 22 41 41 GLN GLN B . n B 2 23 ASN 23 42 42 ASN ASN B . n B 2 24 GLY 24 43 43 GLY GLY B . n B 2 25 ASP 25 44 44 ASP ASP B . n B 2 26 ILE 26 45 45 ILE ILE B . n B 2 27 THR 27 46 46 THR THR B . n B 2 28 ARG 28 47 47 ARG ARG B . n B 2 29 ILE 29 48 48 ILE ILE B . n B 2 30 GLU 30 49 49 GLU GLU B . n B 2 31 MET 31 50 50 MET MET B . n B 2 32 GLN 32 51 51 GLN GLN B . n B 2 33 CYS 33 52 52 CYS CYS B . n B 2 34 THR 34 53 53 THR THR B . n B 2 35 ASP 35 54 54 ASP ASP B . n B 2 36 VAL 36 55 55 VAL VAL B . n B 2 37 ALA 37 56 56 ALA ALA B . n B 2 38 THR 38 57 57 THR THR B . n B 2 39 TYR 39 58 58 TYR TYR B . n B 2 40 ILE 40 59 59 ILE ILE B . n B 2 41 LYS 41 60 60 LYS LYS B . n B 2 42 LEU 42 61 61 LEU LEU B . n B 2 43 ARG 43 62 62 ARG ARG B . n B 2 44 TYR 44 63 63 TYR TYR B . n B 2 45 GLY 45 64 64 GLY GLY B . n B 2 46 LYS 46 65 65 LYS LYS B . n B 2 47 VAL 47 66 66 VAL VAL B . n B 2 48 ASP 48 67 67 ASP ASP B . n B 2 49 SER 49 68 68 SER SER B . n B 2 50 ARG 50 69 69 ARG ARG B . n B 2 51 GLN 51 70 70 GLN GLN B . n B 2 52 TRP 52 71 71 TRP TRP B . n B 2 53 GLY 53 72 72 GLY GLY B . n B 2 54 TRP 54 73 73 TRP TRP B . n B 2 55 GLY 55 74 74 GLY ALA B . n B 2 56 ASN 56 75 75 ASN ASN B . n B 2 57 GLU 57 76 76 GLU GLU B . n B 2 58 ASN 58 77 77 ASN ASN B . n B 2 59 CYS 59 78 78 CYS CYS B . n B 2 60 ILE 60 79 79 ILE ILE B . n B 2 61 GLN 61 80 80 GLN GLN B . n B 2 62 TRP 62 81 81 TRP TRP B . n B 2 63 SER 63 82 82 SER SER B . n B 2 64 LYS 64 83 83 LYS LYS B . n B 2 65 LYS 65 84 84 LYS LYS B . n B 2 66 GLY 66 85 85 GLY GLY B . n B 2 67 GLU 67 86 86 GLU GLU B . n B 2 68 LYS 68 87 87 LYS LYS B . n B 2 69 VAL 69 88 88 VAL VAL B . n B 2 70 VAL 70 89 89 VAL VAL B . n B 2 71 HIS 71 90 90 HIS HIS B . n B 2 72 GLU 72 91 91 GLU GLU B . n B 2 73 LEU 73 92 92 LEU LEU B . n B 2 74 SER 74 93 93 SER SER B . n B 2 75 SER 75 94 94 SER SER B . n B 2 76 GLY 76 95 95 GLY GLY B . n B 2 77 GLU 77 96 96 GLU GLU B . n B 2 78 TYR 78 97 97 TYR TYR B . n B 2 79 ILE 79 98 98 ILE ILE B . n B 2 80 THR 80 99 99 THR THR B . n B 2 81 SER 81 100 100 SER SER B . n B 2 82 ALA 82 101 101 ALA ALA B . n B 2 83 ILE 83 102 102 ILE ILE B . n B 2 84 VAL 84 103 103 VAL VAL B . n B 2 85 THR 85 104 104 THR THR B . n B 2 86 TYR 86 105 105 TYR TYR B . n B 2 87 GLY 87 106 106 GLY GLY B . n B 2 88 LYS 88 107 107 LYS LYS B . n B 2 89 TYR 89 108 108 TYR TYR B . n B 2 90 VAL 90 109 109 VAL VAL B . n B 2 91 GLN 91 110 110 GLN GLN B . n B 2 92 SER 92 111 111 SER SER B . n B 2 93 ILE 93 112 112 ILE ILE B . n B 2 94 THR 94 113 113 THR THR B . n B 2 95 PHE 95 114 114 PHE PHE B . n B 2 96 LYS 96 115 115 LYS LYS B . n B 2 97 THR 97 116 116 THR THR B . n B 2 98 ASN 98 117 117 ASN ASN B . n B 2 99 LYS 99 118 118 LYS LYS B . n B 2 100 ARG 100 119 119 ARG ARG B . n B 2 101 THR 101 120 120 THR THR B . n B 2 102 LEU 102 121 121 LEU LEU B . n B 2 103 PRO 103 122 122 PRO PRO B . n B 2 104 ARG 104 123 123 ARG ARG B . n B 2 105 CYS 105 124 124 CYS CYS B . n B 2 106 GLY 106 125 125 GLY GLY B . n B 2 107 THR 107 126 126 THR THR B . n B 2 108 SER 108 127 127 SER SER B . n B 2 109 ALA 109 128 128 ALA ALA B . n B 2 110 THR 110 129 129 THR THR B . n B 2 111 GLU 111 130 130 GLU GLU B . n B 2 112 LYS 112 131 131 LYS LYS B . n B 2 113 SER 113 132 132 SER SER B . n B 2 114 VAL 114 133 133 VAL VAL B . n B 2 115 THR 115 134 134 THR THR B . n B 2 116 VAL 116 135 135 VAL VAL B . n B 2 117 LEU 117 136 136 LEU LEU B . n B 2 118 ILE 118 137 137 ILE ILE B . n B 2 119 PRO 119 138 138 PRO PRO B . n B 2 120 GLY 120 139 139 GLY GLY B . n B 2 121 GLY 121 140 140 GLY GLY B . n B 2 122 LEU 122 141 141 LEU LEU B . n B 2 123 LYS 123 142 142 LYS LYS B . n B 2 124 TYR 124 143 143 TYR TYR B . n B 2 125 ILE 125 144 144 ILE ILE B . n B 2 126 SER 126 145 145 SER SER B . n B 2 127 GLY 127 146 146 GLY GLY B . n B 2 128 ARG 128 147 147 ARG ARG B . n B 2 129 TRP 129 148 148 TRP TRP B . n B 2 130 GLY 130 149 149 GLY GLY B . n B 2 131 CYS 131 150 150 CYS CYS B . n B 2 132 ARG 132 151 151 ARG ARG B . n B 2 133 ILE 133 152 152 ILE ILE B . n B 2 134 ASP 134 153 153 ASP ASP B . n B 2 135 GLY 135 154 154 GLY GLY B . n B 2 136 LEU 136 155 155 LEU LEU B . n B 2 137 ARG 137 156 156 ARG ARG B . n B 2 138 PHE 138 157 157 PHE PHE B . n B 2 139 HIS 139 158 158 HIS HIS B . n B 2 140 ALA 140 159 159 ALA ALA B . n B 2 141 LYS 141 160 160 LYS LYS B . n B 2 142 CYS 142 161 161 CYS CYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GLC 1 201 1 GLC GLC A . E 4 GLC 1 202 2 GLC GLC A . F 5 SO4 1 203 2 SO4 SO4 A . G 5 SO4 1 204 3 SO4 SO4 A . H 5 SO4 1 205 6 SO4 SO4 A . I 5 SO4 1 203 5 SO4 SO4 B . J 6 HOH 1 301 145 HOH HOH A . J 6 HOH 2 302 349 HOH HOH A . J 6 HOH 3 303 345 HOH HOH A . J 6 HOH 4 304 164 HOH HOH A . J 6 HOH 5 305 321 HOH HOH A . J 6 HOH 6 306 282 HOH HOH A . J 6 HOH 7 307 97 HOH HOH A . J 6 HOH 8 308 160 HOH HOH A . J 6 HOH 9 309 119 HOH HOH A . J 6 HOH 10 310 301 HOH HOH A . J 6 HOH 11 311 100 HOH HOH A . J 6 HOH 12 312 340 HOH HOH A . J 6 HOH 13 313 215 HOH HOH A . J 6 HOH 14 314 28 HOH HOH A . J 6 HOH 15 315 233 HOH HOH A . J 6 HOH 16 316 487 HOH HOH A . J 6 HOH 17 317 404 HOH HOH A . J 6 HOH 18 318 170 HOH HOH A . J 6 HOH 19 319 291 HOH HOH A . J 6 HOH 20 320 468 HOH HOH A . J 6 HOH 21 321 359 HOH HOH A . J 6 HOH 22 322 43 HOH HOH A . J 6 HOH 23 323 422 HOH HOH A . J 6 HOH 24 324 75 HOH HOH A . J 6 HOH 25 325 153 HOH HOH A . J 6 HOH 26 326 11 HOH HOH A . J 6 HOH 27 327 48 HOH HOH A . J 6 HOH 28 328 182 HOH HOH A . J 6 HOH 29 329 130 HOH HOH A . J 6 HOH 30 330 287 HOH HOH A . J 6 HOH 31 331 37 HOH HOH A . J 6 HOH 32 332 6 HOH HOH A . J 6 HOH 33 333 204 HOH HOH A . J 6 HOH 34 334 283 HOH HOH A . J 6 HOH 35 335 356 HOH HOH A . J 6 HOH 36 336 74 HOH HOH A . J 6 HOH 37 337 216 HOH HOH A . J 6 HOH 38 338 20 HOH HOH A . J 6 HOH 39 339 41 HOH HOH A . J 6 HOH 40 340 149 HOH HOH A . J 6 HOH 41 341 334 HOH HOH A . J 6 HOH 42 342 230 HOH HOH A . J 6 HOH 43 343 240 HOH HOH A . J 6 HOH 44 344 133 HOH HOH A . J 6 HOH 45 345 31 HOH HOH A . J 6 HOH 46 346 137 HOH HOH A . J 6 HOH 47 347 445 HOH HOH A . J 6 HOH 48 348 375 HOH HOH A . J 6 HOH 49 349 85 HOH HOH A . J 6 HOH 50 350 173 HOH HOH A . J 6 HOH 51 351 256 HOH HOH A . J 6 HOH 52 352 98 HOH HOH A . J 6 HOH 53 353 32 HOH HOH A . J 6 HOH 54 354 44 HOH HOH A . J 6 HOH 55 355 16 HOH HOH A . J 6 HOH 56 356 309 HOH HOH A . J 6 HOH 57 357 243 HOH HOH A . J 6 HOH 58 358 118 HOH HOH A . J 6 HOH 59 359 62 HOH HOH A . J 6 HOH 60 360 102 HOH HOH A . J 6 HOH 61 361 482 HOH HOH A . J 6 HOH 62 362 381 HOH HOH A . J 6 HOH 63 363 188 HOH HOH A . J 6 HOH 64 364 58 HOH HOH A . J 6 HOH 65 365 24 HOH HOH A . J 6 HOH 66 366 81 HOH HOH A . J 6 HOH 67 367 131 HOH HOH A . J 6 HOH 68 368 478 HOH HOH A . J 6 HOH 69 369 34 HOH HOH A . J 6 HOH 70 370 106 HOH HOH A . J 6 HOH 71 371 79 HOH HOH A . J 6 HOH 72 372 264 HOH HOH A . J 6 HOH 73 373 461 HOH HOH A . J 6 HOH 74 374 194 HOH HOH A . J 6 HOH 75 375 56 HOH HOH A . J 6 HOH 76 376 407 HOH HOH A . J 6 HOH 77 377 172 HOH HOH A . J 6 HOH 78 378 59 HOH HOH A . J 6 HOH 79 379 191 HOH HOH A . J 6 HOH 80 380 395 HOH HOH A . J 6 HOH 81 381 52 HOH HOH A . J 6 HOH 82 382 33 HOH HOH A . J 6 HOH 83 383 294 HOH HOH A . J 6 HOH 84 384 126 HOH HOH A . J 6 HOH 85 385 57 HOH HOH A . J 6 HOH 86 386 70 HOH HOH A . J 6 HOH 87 387 236 HOH HOH A . J 6 HOH 88 388 155 HOH HOH A . J 6 HOH 89 389 80 HOH HOH A . J 6 HOH 90 390 327 HOH HOH A . J 6 HOH 91 391 311 HOH HOH A . J 6 HOH 92 392 150 HOH HOH A . J 6 HOH 93 393 115 HOH HOH A . J 6 HOH 94 394 174 HOH HOH A . J 6 HOH 95 395 372 HOH HOH A . J 6 HOH 96 396 246 HOH HOH A . J 6 HOH 97 397 25 HOH HOH A . J 6 HOH 98 398 451 HOH HOH A . J 6 HOH 99 399 329 HOH HOH A . J 6 HOH 100 400 71 HOH HOH A . J 6 HOH 101 401 83 HOH HOH A . J 6 HOH 102 402 18 HOH HOH A . J 6 HOH 103 403 265 HOH HOH A . J 6 HOH 104 404 14 HOH HOH A . J 6 HOH 105 405 122 HOH HOH A . J 6 HOH 106 406 9 HOH HOH A . J 6 HOH 107 407 177 HOH HOH A . J 6 HOH 108 408 69 HOH HOH A . J 6 HOH 109 409 184 HOH HOH A . J 6 HOH 110 410 227 HOH HOH A . J 6 HOH 111 411 307 HOH HOH A . J 6 HOH 112 412 107 HOH HOH A . J 6 HOH 113 413 292 HOH HOH A . J 6 HOH 114 414 332 HOH HOH A . J 6 HOH 115 415 225 HOH HOH A . J 6 HOH 116 416 221 HOH HOH A . J 6 HOH 117 417 36 HOH HOH A . J 6 HOH 118 418 290 HOH HOH A . J 6 HOH 119 419 231 HOH HOH A . J 6 HOH 120 420 365 HOH HOH A . J 6 HOH 121 421 156 HOH HOH A . J 6 HOH 122 422 186 HOH HOH A . J 6 HOH 123 423 312 HOH HOH A . J 6 HOH 124 424 245 HOH HOH A . J 6 HOH 125 425 82 HOH HOH A . J 6 HOH 126 426 348 HOH HOH A . J 6 HOH 127 427 192 HOH HOH A . J 6 HOH 128 428 238 HOH HOH A . J 6 HOH 129 429 380 HOH HOH A . J 6 HOH 130 430 166 HOH HOH A . J 6 HOH 131 431 388 HOH HOH A . J 6 HOH 132 432 88 HOH HOH A . J 6 HOH 133 433 146 HOH HOH A . J 6 HOH 134 434 324 HOH HOH A . J 6 HOH 135 435 459 HOH HOH A . J 6 HOH 136 436 339 HOH HOH A . J 6 HOH 137 437 463 HOH HOH A . J 6 HOH 138 438 158 HOH HOH A . J 6 HOH 139 439 295 HOH HOH A . J 6 HOH 140 440 317 HOH HOH A . J 6 HOH 141 441 35 HOH HOH A . J 6 HOH 142 442 128 HOH HOH A . J 6 HOH 143 443 421 HOH HOH A . J 6 HOH 144 444 222 HOH HOH A . J 6 HOH 145 445 218 HOH HOH A . J 6 HOH 146 446 448 HOH HOH A . J 6 HOH 147 447 368 HOH HOH A . J 6 HOH 148 448 436 HOH HOH A . J 6 HOH 149 449 428 HOH HOH A . J 6 HOH 150 450 39 HOH HOH A . J 6 HOH 151 451 331 HOH HOH A . J 6 HOH 152 452 362 HOH HOH A . J 6 HOH 153 453 360 HOH HOH A . J 6 HOH 154 454 148 HOH HOH A . J 6 HOH 155 455 235 HOH HOH A . J 6 HOH 156 456 377 HOH HOH A . J 6 HOH 157 457 61 HOH HOH A . J 6 HOH 158 458 136 HOH HOH A . J 6 HOH 159 459 446 HOH HOH A . J 6 HOH 160 460 178 HOH HOH A . J 6 HOH 161 461 369 HOH HOH A . J 6 HOH 162 462 469 HOH HOH A . J 6 HOH 163 463 416 HOH HOH A . J 6 HOH 164 464 481 HOH HOH A . J 6 HOH 165 465 429 HOH HOH A . J 6 HOH 166 466 284 HOH HOH A . J 6 HOH 167 467 195 HOH HOH A . J 6 HOH 168 468 176 HOH HOH A . J 6 HOH 169 469 223 HOH HOH A . J 6 HOH 170 470 373 HOH HOH A . J 6 HOH 171 471 379 HOH HOH A . J 6 HOH 172 472 399 HOH HOH A . J 6 HOH 173 473 352 HOH HOH A . J 6 HOH 174 474 343 HOH HOH A . J 6 HOH 175 475 219 HOH HOH A . J 6 HOH 176 476 376 HOH HOH A . J 6 HOH 177 477 420 HOH HOH A . J 6 HOH 178 478 280 HOH HOH A . J 6 HOH 179 479 116 HOH HOH A . J 6 HOH 180 480 273 HOH HOH A . J 6 HOH 181 481 320 HOH HOH A . J 6 HOH 182 482 78 HOH HOH A . J 6 HOH 183 483 452 HOH HOH A . J 6 HOH 184 484 168 HOH HOH A . J 6 HOH 185 485 257 HOH HOH A . J 6 HOH 186 486 313 HOH HOH A . J 6 HOH 187 487 274 HOH HOH A . J 6 HOH 188 488 455 HOH HOH A . J 6 HOH 189 489 260 HOH HOH A . J 6 HOH 190 490 396 HOH HOH A . J 6 HOH 191 491 483 HOH HOH A . J 6 HOH 192 492 247 HOH HOH A . J 6 HOH 193 493 171 HOH HOH A . J 6 HOH 194 494 476 HOH HOH A . J 6 HOH 195 495 358 HOH HOH A . J 6 HOH 196 496 438 HOH HOH A . J 6 HOH 197 497 408 HOH HOH A . J 6 HOH 198 498 234 HOH HOH A . J 6 HOH 199 499 363 HOH HOH A . J 6 HOH 200 500 185 HOH HOH A . J 6 HOH 201 501 269 HOH HOH A . J 6 HOH 202 502 440 HOH HOH A . J 6 HOH 203 503 333 HOH HOH A . J 6 HOH 204 504 444 HOH HOH A . J 6 HOH 205 505 447 HOH HOH A . J 6 HOH 206 506 367 HOH HOH A . J 6 HOH 207 507 322 HOH HOH A . J 6 HOH 208 508 370 HOH HOH A . J 6 HOH 209 509 415 HOH HOH A . J 6 HOH 210 510 355 HOH HOH A . J 6 HOH 211 511 437 HOH HOH A . J 6 HOH 212 512 196 HOH HOH A . J 6 HOH 213 513 477 HOH HOH A . J 6 HOH 214 514 441 HOH HOH A . K 6 HOH 1 301 211 HOH HOH B . K 6 HOH 2 302 239 HOH HOH B . K 6 HOH 3 303 288 HOH HOH B . K 6 HOH 4 304 179 HOH HOH B . K 6 HOH 5 305 293 HOH HOH B . K 6 HOH 6 306 465 HOH HOH B . K 6 HOH 7 307 297 HOH HOH B . K 6 HOH 8 308 304 HOH HOH B . K 6 HOH 9 309 262 HOH HOH B . K 6 HOH 10 310 354 HOH HOH B . K 6 HOH 11 311 151 HOH HOH B . K 6 HOH 12 312 200 HOH HOH B . K 6 HOH 13 313 135 HOH HOH B . K 6 HOH 14 314 190 HOH HOH B . K 6 HOH 15 315 163 HOH HOH B . K 6 HOH 16 316 212 HOH HOH B . K 6 HOH 17 317 1 HOH HOH B . K 6 HOH 18 318 198 HOH HOH B . K 6 HOH 19 319 197 HOH HOH B . K 6 HOH 20 320 12 HOH HOH B . K 6 HOH 21 321 8 HOH HOH B . K 6 HOH 22 322 42 HOH HOH B . K 6 HOH 23 323 72 HOH HOH B . K 6 HOH 24 324 13 HOH HOH B . K 6 HOH 25 325 64 HOH HOH B . K 6 HOH 26 326 266 HOH HOH B . K 6 HOH 27 327 3 HOH HOH B . K 6 HOH 28 328 86 HOH HOH B . K 6 HOH 29 329 134 HOH HOH B . K 6 HOH 30 330 60 HOH HOH B . K 6 HOH 31 331 113 HOH HOH B . K 6 HOH 32 332 117 HOH HOH B . K 6 HOH 33 333 53 HOH HOH B . K 6 HOH 34 334 254 HOH HOH B . K 6 HOH 35 335 484 HOH HOH B . K 6 HOH 36 336 244 HOH HOH B . K 6 HOH 37 337 10 HOH HOH B . K 6 HOH 38 338 241 HOH HOH B . K 6 HOH 39 339 15 HOH HOH B . K 6 HOH 40 340 29 HOH HOH B . K 6 HOH 41 341 93 HOH HOH B . K 6 HOH 42 342 220 HOH HOH B . K 6 HOH 43 343 129 HOH HOH B . K 6 HOH 44 344 300 HOH HOH B . K 6 HOH 45 345 434 HOH HOH B . K 6 HOH 46 346 77 HOH HOH B . K 6 HOH 47 347 138 HOH HOH B . K 6 HOH 48 348 242 HOH HOH B . K 6 HOH 49 349 187 HOH HOH B . K 6 HOH 50 350 4 HOH HOH B . K 6 HOH 51 351 47 HOH HOH B . K 6 HOH 52 352 63 HOH HOH B . K 6 HOH 53 353 325 HOH HOH B . K 6 HOH 54 354 263 HOH HOH B . K 6 HOH 55 355 55 HOH HOH B . K 6 HOH 56 356 68 HOH HOH B . K 6 HOH 57 357 17 HOH HOH B . K 6 HOH 58 358 162 HOH HOH B . K 6 HOH 59 359 267 HOH HOH B . K 6 HOH 60 360 91 HOH HOH B . K 6 HOH 61 361 157 HOH HOH B . K 6 HOH 62 362 193 HOH HOH B . K 6 HOH 63 363 26 HOH HOH B . K 6 HOH 64 364 5 HOH HOH B . K 6 HOH 65 365 237 HOH HOH B . K 6 HOH 66 366 2 HOH HOH B . K 6 HOH 67 367 252 HOH HOH B . K 6 HOH 68 368 175 HOH HOH B . K 6 HOH 69 369 412 HOH HOH B . K 6 HOH 70 370 127 HOH HOH B . K 6 HOH 71 371 30 HOH HOH B . K 6 HOH 72 372 281 HOH HOH B . K 6 HOH 73 373 419 HOH HOH B . K 6 HOH 74 374 306 HOH HOH B . K 6 HOH 75 375 201 HOH HOH B . K 6 HOH 76 376 248 HOH HOH B . K 6 HOH 77 377 181 HOH HOH B . K 6 HOH 78 378 73 HOH HOH B . K 6 HOH 79 379 89 HOH HOH B . K 6 HOH 80 380 251 HOH HOH B . K 6 HOH 81 381 19 HOH HOH B . K 6 HOH 82 382 108 HOH HOH B . K 6 HOH 83 383 390 HOH HOH B . K 6 HOH 84 384 111 HOH HOH B . K 6 HOH 85 385 84 HOH HOH B . K 6 HOH 86 386 22 HOH HOH B . K 6 HOH 87 387 397 HOH HOH B . K 6 HOH 88 388 87 HOH HOH B . K 6 HOH 89 389 132 HOH HOH B . K 6 HOH 90 390 51 HOH HOH B . K 6 HOH 91 391 45 HOH HOH B . K 6 HOH 92 392 112 HOH HOH B . K 6 HOH 93 393 426 HOH HOH B . K 6 HOH 94 394 121 HOH HOH B . K 6 HOH 95 395 40 HOH HOH B . K 6 HOH 96 396 7 HOH HOH B . K 6 HOH 97 397 169 HOH HOH B . K 6 HOH 98 398 124 HOH HOH B . K 6 HOH 99 399 23 HOH HOH B . K 6 HOH 100 400 206 HOH HOH B . K 6 HOH 101 401 454 HOH HOH B . K 6 HOH 102 402 180 HOH HOH B . K 6 HOH 103 403 104 HOH HOH B . K 6 HOH 104 404 154 HOH HOH B . K 6 HOH 105 405 54 HOH HOH B . K 6 HOH 106 406 486 HOH HOH B . K 6 HOH 107 407 46 HOH HOH B . K 6 HOH 108 408 139 HOH HOH B . K 6 HOH 109 409 285 HOH HOH B . K 6 HOH 110 410 96 HOH HOH B . K 6 HOH 111 411 253 HOH HOH B . K 6 HOH 112 412 103 HOH HOH B . K 6 HOH 113 413 210 HOH HOH B . K 6 HOH 114 414 90 HOH HOH B . K 6 HOH 115 415 315 HOH HOH B . K 6 HOH 116 416 27 HOH HOH B . K 6 HOH 117 417 271 HOH HOH B . K 6 HOH 118 418 435 HOH HOH B . K 6 HOH 119 419 261 HOH HOH B . K 6 HOH 120 420 66 HOH HOH B . K 6 HOH 121 421 50 HOH HOH B . K 6 HOH 122 422 391 HOH HOH B . K 6 HOH 123 423 473 HOH HOH B . K 6 HOH 124 424 318 HOH HOH B . K 6 HOH 125 425 143 HOH HOH B . K 6 HOH 126 426 142 HOH HOH B . K 6 HOH 127 427 94 HOH HOH B . K 6 HOH 128 428 443 HOH HOH B . K 6 HOH 129 429 203 HOH HOH B . K 6 HOH 130 430 378 HOH HOH B . K 6 HOH 131 431 299 HOH HOH B . K 6 HOH 132 432 319 HOH HOH B . K 6 HOH 133 433 393 HOH HOH B . K 6 HOH 134 434 161 HOH HOH B . K 6 HOH 135 435 199 HOH HOH B . K 6 HOH 136 436 76 HOH HOH B . K 6 HOH 137 437 458 HOH HOH B . K 6 HOH 138 438 471 HOH HOH B . K 6 HOH 139 439 400 HOH HOH B . K 6 HOH 140 440 152 HOH HOH B . K 6 HOH 141 441 305 HOH HOH B . K 6 HOH 142 442 366 HOH HOH B . K 6 HOH 143 443 65 HOH HOH B . K 6 HOH 144 444 167 HOH HOH B . K 6 HOH 145 445 336 HOH HOH B . K 6 HOH 146 446 226 HOH HOH B . K 6 HOH 147 447 383 HOH HOH B . K 6 HOH 148 448 255 HOH HOH B . K 6 HOH 149 449 302 HOH HOH B . K 6 HOH 150 450 95 HOH HOH B . K 6 HOH 151 451 385 HOH HOH B . K 6 HOH 152 452 147 HOH HOH B . K 6 HOH 153 453 417 HOH HOH B . K 6 HOH 154 454 21 HOH HOH B . K 6 HOH 155 455 338 HOH HOH B . K 6 HOH 156 456 123 HOH HOH B . K 6 HOH 157 457 275 HOH HOH B . K 6 HOH 158 458 272 HOH HOH B . K 6 HOH 159 459 120 HOH HOH B . K 6 HOH 160 460 460 HOH HOH B . K 6 HOH 161 461 310 HOH HOH B . K 6 HOH 162 462 140 HOH HOH B . K 6 HOH 163 463 418 HOH HOH B . K 6 HOH 164 464 403 HOH HOH B . K 6 HOH 165 465 228 HOH HOH B . K 6 HOH 166 466 466 HOH HOH B . K 6 HOH 167 467 314 HOH HOH B . K 6 HOH 168 468 109 HOH HOH B . K 6 HOH 169 469 202 HOH HOH B . K 6 HOH 170 470 101 HOH HOH B . K 6 HOH 171 471 217 HOH HOH B . K 6 HOH 172 472 213 HOH HOH B . K 6 HOH 173 473 394 HOH HOH B . K 6 HOH 174 474 479 HOH HOH B . K 6 HOH 175 475 258 HOH HOH B . K 6 HOH 176 476 353 HOH HOH B . K 6 HOH 177 477 344 HOH HOH B . K 6 HOH 178 478 323 HOH HOH B . K 6 HOH 179 479 485 HOH HOH B . K 6 HOH 180 480 296 HOH HOH B . K 6 HOH 181 481 276 HOH HOH B . K 6 HOH 182 482 141 HOH HOH B . K 6 HOH 183 483 442 HOH HOH B . K 6 HOH 184 484 110 HOH HOH B . K 6 HOH 185 485 410 HOH HOH B . K 6 HOH 186 486 289 HOH HOH B . K 6 HOH 187 487 208 HOH HOH B . K 6 HOH 188 488 105 HOH HOH B . K 6 HOH 189 489 49 HOH HOH B . K 6 HOH 190 490 67 HOH HOH B . K 6 HOH 191 491 308 HOH HOH B . K 6 HOH 192 492 341 HOH HOH B . K 6 HOH 193 493 328 HOH HOH B . K 6 HOH 194 494 382 HOH HOH B . K 6 HOH 195 495 205 HOH HOH B . K 6 HOH 196 496 337 HOH HOH B . K 6 HOH 197 497 144 HOH HOH B . K 6 HOH 198 498 209 HOH HOH B . K 6 HOH 199 499 114 HOH HOH B . K 6 HOH 200 500 316 HOH HOH B . K 6 HOH 201 501 384 HOH HOH B . K 6 HOH 202 502 165 HOH HOH B . K 6 HOH 203 503 342 HOH HOH B . K 6 HOH 204 504 387 HOH HOH B . K 6 HOH 205 505 278 HOH HOH B . K 6 HOH 206 506 357 HOH HOH B . K 6 HOH 207 507 398 HOH HOH B . K 6 HOH 208 508 474 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900006 _pdbx_molecule_features.name trehalose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900006 _pdbx_molecule.asym_id C # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id PCA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id PCA _pdbx_struct_mod_residue.auth_seq_id 20 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLN _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2070 ? 1 MORE -50 ? 1 'SSA (A^2)' 13210 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-29 2 'Structure model' 2 0 2020-01-01 3 'Structure model' 3 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Polymer sequence' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Atomic model' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' entity 3 2 'Structure model' entity_poly 4 2 'Structure model' pdbx_struct_mod_residue 5 2 'Structure model' struct_ref_seq_dif 6 3 'Structure model' atom_site 7 3 'Structure model' chem_comp 8 3 'Structure model' entity 9 3 'Structure model' entity_name_com 10 3 'Structure model' pdbx_branch_scheme 11 3 'Structure model' pdbx_chem_comp_identifier 12 3 'Structure model' pdbx_entity_branch 13 3 'Structure model' pdbx_entity_branch_descriptor 14 3 'Structure model' pdbx_entity_branch_link 15 3 'Structure model' pdbx_entity_branch_list 16 3 'Structure model' pdbx_entity_nonpoly 17 3 'Structure model' pdbx_molecule_features 18 3 'Structure model' pdbx_nonpoly_scheme 19 3 'Structure model' pdbx_struct_assembly_gen 20 3 'Structure model' struct_asym 21 3 'Structure model' struct_conn 22 3 'Structure model' struct_site 23 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.type' 2 2 'Structure model' '_entity.pdbx_description' 3 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 4 3 'Structure model' '_atom_site.B_iso_or_equiv' 5 3 'Structure model' '_atom_site.Cartn_x' 6 3 'Structure model' '_atom_site.Cartn_y' 7 3 'Structure model' '_atom_site.Cartn_z' 8 3 'Structure model' '_atom_site.auth_asym_id' 9 3 'Structure model' '_atom_site.auth_atom_id' 10 3 'Structure model' '_atom_site.auth_comp_id' 11 3 'Structure model' '_atom_site.auth_seq_id' 12 3 'Structure model' '_atom_site.label_asym_id' 13 3 'Structure model' '_atom_site.label_atom_id' 14 3 'Structure model' '_atom_site.label_comp_id' 15 3 'Structure model' '_atom_site.label_entity_id' 16 3 'Structure model' '_atom_site.type_symbol' 17 3 'Structure model' '_chem_comp.name' 18 3 'Structure model' '_chem_comp.type' 19 3 'Structure model' '_pdbx_entity_nonpoly.entity_id' 20 3 'Structure model' '_pdbx_entity_nonpoly.name' 21 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 22 3 'Structure model' '_struct_conn.pdbx_dist_value' 23 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5YRF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;The N-terminus of subunit after signal peptide removal is Gln20-Val21 from mRNA, but is changed to pGlu20-Val21 or Gln20-Ile21 because of post-translational modifications. The genebank accession for PPL3-a is AB425240.2. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 53 ? ? -139.05 -133.91 2 1 TRP A 73 ? ? 39.43 56.59 3 1 LYS A 84 ? ? -93.73 -64.97 4 1 THR B 53 ? ? -135.52 -134.23 5 1 ASN B 117 ? ? -67.26 0.76 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 514 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.99 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal MEXT Japan JP17H01818 1 AMED Japan 17am0101069j0001 2 MEXT Japan '#25107703' 3 MEXT Japan '#23107505' 4 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 GLC 1 C GLC 1 D GLC 1 n C 3 GLC 2 C GLC 2 D GLC 2 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGlcpa1-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a1-b1' WURCS PDB2Glycan 1.1.0 3 3 '[][a-D-Glcp]{[(1+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 GLC 1 n 3 GLC 2 n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GLC _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GLC _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 alpha-D-glucopyranose GLC 5 'SULFATE ION' SO4 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #