data_5YRI # _entry.id 5YRI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YRI pdb_00005yri 10.2210/pdb5yri/pdb WWPDB D_1300005770 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YRI _pdbx_database_status.recvd_initial_deposition_date 2017-11-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nakae, S.' 1 ? 'Shionyu, M.' 2 ? 'Ogawa, T.' 3 ? 'Shirai, T.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proteins _citation.journal_id_ASTM PSFGEY _citation.journal_id_CSD 0867 _citation.journal_id_ISSN 1097-0134 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 86 _citation.language ? _citation.page_first 644 _citation.page_last 653 _citation.title 'Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/prot.25491 _citation.pdbx_database_id_PubMed 29524263 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nakae, S.' 1 ? primary 'Shionyu, M.' 2 ? primary 'Ogawa, T.' 3 0000-0001-8700-6330 primary 'Shirai, T.' 4 0000-0002-2506-5738 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YRI _cell.details ? _cell.formula_units_Z ? _cell.length_a 45.320 _cell.length_a_esd ? _cell.length_b 50.430 _cell.length_b_esd ? _cell.length_c 108.370 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat PPL3-a 15754.878 1 ? ? ? ? 2 polymer nat PPL3-b 15720.907 1 ? ? ? ? 3 branched man 'alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 4 non-polymer man alpha-D-glucopyranose 180.156 2 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 6 water nat water 18.015 391 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name trehalose # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EIASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; ;EIASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; A ? 2 'polypeptide(L)' no yes ;(PCA)VASEYLGGPGGDAFDDKALAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWANENCIQWSKKGVKVVHELSSG EYITSAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; ;QVASEYLGGPGGDAFDDKALAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWANENCIQWSKKGVKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ILE n 1 3 ALA n 1 4 SER n 1 5 GLU n 1 6 TYR n 1 7 LEU n 1 8 GLY n 1 9 GLY n 1 10 PRO n 1 11 GLY n 1 12 GLY n 1 13 ASP n 1 14 ALA n 1 15 PHE n 1 16 ASP n 1 17 ASP n 1 18 LYS n 1 19 ALA n 1 20 VAL n 1 21 ALA n 1 22 GLN n 1 23 ASN n 1 24 GLY n 1 25 ASP n 1 26 ILE n 1 27 THR n 1 28 ARG n 1 29 ILE n 1 30 GLU n 1 31 MET n 1 32 GLN n 1 33 CYS n 1 34 THR n 1 35 ASP n 1 36 VAL n 1 37 ALA n 1 38 THR n 1 39 TYR n 1 40 ILE n 1 41 LYS n 1 42 LEU n 1 43 ARG n 1 44 TYR n 1 45 GLY n 1 46 LYS n 1 47 VAL n 1 48 ASP n 1 49 SER n 1 50 ARG n 1 51 GLN n 1 52 TRP n 1 53 GLY n 1 54 TRP n 1 55 GLY n 1 56 ASN n 1 57 GLU n 1 58 ASN n 1 59 CYS n 1 60 ILE n 1 61 GLN n 1 62 TRP n 1 63 SER n 1 64 LYS n 1 65 LYS n 1 66 GLY n 1 67 GLU n 1 68 LYS n 1 69 VAL n 1 70 VAL n 1 71 HIS n 1 72 GLU n 1 73 LEU n 1 74 SER n 1 75 SER n 1 76 GLY n 1 77 GLU n 1 78 TYR n 1 79 ILE n 1 80 THR n 1 81 SER n 1 82 ALA n 1 83 ILE n 1 84 VAL n 1 85 THR n 1 86 TYR n 1 87 GLY n 1 88 LYS n 1 89 TYR n 1 90 VAL n 1 91 GLN n 1 92 SER n 1 93 ILE n 1 94 THR n 1 95 PHE n 1 96 LYS n 1 97 THR n 1 98 ASN n 1 99 LYS n 1 100 ARG n 1 101 THR n 1 102 LEU n 1 103 PRO n 1 104 ARG n 1 105 CYS n 1 106 GLY n 1 107 THR n 1 108 SER n 1 109 ALA n 1 110 THR n 1 111 GLU n 1 112 LYS n 1 113 SER n 1 114 VAL n 1 115 THR n 1 116 VAL n 1 117 LEU n 1 118 ILE n 1 119 PRO n 1 120 GLY n 1 121 GLY n 1 122 LEU n 1 123 LYS n 1 124 TYR n 1 125 ILE n 1 126 SER n 1 127 GLY n 1 128 ARG n 1 129 TRP n 1 130 GLY n 1 131 CYS n 1 132 ARG n 1 133 ILE n 1 134 ASP n 1 135 GLY n 1 136 LEU n 1 137 ARG n 1 138 PHE n 1 139 HIS n 1 140 ALA n 1 141 LYS n 1 142 CYS n 2 1 PCA n 2 2 VAL n 2 3 ALA n 2 4 SER n 2 5 GLU n 2 6 TYR n 2 7 LEU n 2 8 GLY n 2 9 GLY n 2 10 PRO n 2 11 GLY n 2 12 GLY n 2 13 ASP n 2 14 ALA n 2 15 PHE n 2 16 ASP n 2 17 ASP n 2 18 LYS n 2 19 ALA n 2 20 LEU n 2 21 ALA n 2 22 GLN n 2 23 ASN n 2 24 GLY n 2 25 ASP n 2 26 ILE n 2 27 THR n 2 28 ARG n 2 29 ILE n 2 30 GLU n 2 31 MET n 2 32 GLN n 2 33 CYS n 2 34 THR n 2 35 ASP n 2 36 VAL n 2 37 ALA n 2 38 THR n 2 39 TYR n 2 40 ILE n 2 41 LYS n 2 42 LEU n 2 43 ARG n 2 44 TYR n 2 45 GLY n 2 46 LYS n 2 47 VAL n 2 48 ASP n 2 49 SER n 2 50 ARG n 2 51 GLN n 2 52 TRP n 2 53 GLY n 2 54 TRP n 2 55 ALA n 2 56 ASN n 2 57 GLU n 2 58 ASN n 2 59 CYS n 2 60 ILE n 2 61 GLN n 2 62 TRP n 2 63 SER n 2 64 LYS n 2 65 LYS n 2 66 GLY n 2 67 VAL n 2 68 LYS n 2 69 VAL n 2 70 VAL n 2 71 HIS n 2 72 GLU n 2 73 LEU n 2 74 SER n 2 75 SER n 2 76 GLY n 2 77 GLU n 2 78 TYR n 2 79 ILE n 2 80 THR n 2 81 SER n 2 82 ALA n 2 83 ILE n 2 84 VAL n 2 85 THR n 2 86 TYR n 2 87 GLY n 2 88 LYS n 2 89 TYR n 2 90 VAL n 2 91 GLN n 2 92 SER n 2 93 ILE n 2 94 THR n 2 95 PHE n 2 96 LYS n 2 97 THR n 2 98 ASN n 2 99 LYS n 2 100 ARG n 2 101 THR n 2 102 LEU n 2 103 PRO n 2 104 ARG n 2 105 CYS n 2 106 GLY n 2 107 THR n 2 108 SER n 2 109 ALA n 2 110 THR n 2 111 GLU n 2 112 LYS n 2 113 SER n 2 114 VAL n 2 115 THR n 2 116 VAL n 2 117 LEU n 2 118 ILE n 2 119 PRO n 2 120 GLY n 2 121 GLY n 2 122 LEU n 2 123 LYS n 2 124 TYR n 2 125 ILE n 2 126 SER n 2 127 GLY n 2 128 ARG n 2 129 TRP n 2 130 GLY n 2 131 CYS n 2 132 ARG n 2 133 ILE n 2 134 ASP n 2 135 GLY n 2 136 LEU n 2 137 ARG n 2 138 PHE n 2 139 HIS n 2 140 ALA n 2 141 LYS n 2 142 CYS n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 142 'Winged pearl oyster' 'Pteria penguin' 113549 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 142 ? 'Pteria penguin' 113549 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP B6F0T7_PTEPN B6F0T7 ? 1 ;QVASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSRQWGWGNENCIQWSKKGEKVVHELSSGEYIT SAIVTYGKYVQSITFKTNKRTLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC ; 20 2 PDB 5YRI 5YRI ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YRI A 1 ? 142 ? B6F0T7 20 ? 161 ? 20 161 2 2 5YRI B 1 ? 142 ? 5YRI 20 ? 161 ? 20 161 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YRI GLU A 1 ? UNP B6F0T7 GLN 20 'see sequence details' 20 1 1 5YRI ILE A 2 ? UNP B6F0T7 VAL 21 'see sequence details' 21 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose 'alpha-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YRI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2M ammonium sulfate, 25%(w/v) PEG 3350, 0.1M Tris buffer pH 5.5 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YRI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 20.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28190 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.8 _reflns.pdbx_Rmerge_I_obs 0.028 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 18.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.74 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 6.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 4002 _reflns_shell.percent_possible_all 90.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.119 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YRI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.650 _refine.ls_d_res_low 19.913 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28124 _refine.ls_number_reflns_R_free 1413 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 91.76 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1798 _refine.ls_R_factor_R_free 0.2447 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1763 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5YRK _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.74 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.24 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2202 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 391 _refine_hist.number_atoms_total 2643 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 19.913 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 2336 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.144 ? 3166 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 17.306 ? 886 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.359 ? 349 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 394 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6500 1.7089 . . 124 2601 90.00 . . . 0.3522 . 0.2818 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7089 1.7773 . . 137 2573 90.00 . . . 0.3265 . 0.2389 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7773 1.8582 . . 129 2578 90.00 . . . 0.3080 . 0.2197 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8582 1.9560 . . 143 2604 90.00 . . . 0.2895 . 0.1933 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9560 2.0785 . . 154 2600 91.00 . . . 0.2697 . 0.1804 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0785 2.2388 . . 133 2636 91.00 . . . 0.2356 . 0.1620 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2388 2.4637 . . 128 2641 91.00 . . . 0.2521 . 0.1663 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4637 2.8193 . . 137 2660 90.00 . . . 0.2398 . 0.1732 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8193 3.5488 . . 157 2746 94.00 . . . 0.2128 . 0.1511 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5488 19.9142 . . 171 3072 100.00 . . . 0.2100 . 0.1621 . . . . . . . . . . # _struct.entry_id 5YRI _struct.title 'PPL3B-trehalose complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YRI _struct_keywords.text 'Lectin, Biomineralization, Post-translational modification, Calcite, Docking simulation, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 19 ? GLY A 24 ? ALA A 38 GLY A 43 5 ? 6 HELX_P HELX_P2 AA2 ASN A 56 ? TRP A 62 ? ASN A 75 TRP A 81 5 ? 7 HELX_P HELX_P3 AA3 ALA B 19 ? GLY B 24 ? ALA B 38 GLY B 43 5 ? 6 HELX_P HELX_P4 AA4 ASN B 56 ? TRP B 62 ? ASN B 75 TRP B 81 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 52 A CYS 124 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 131 SG ? ? A CYS 78 A CYS 150 1_555 ? ? ? ? ? ? ? 2.008 ? ? disulf3 disulf ? ? A CYS 142 SG A ? ? 1_555 B CYS 142 SG A ? A CYS 161 B CYS 161 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf4 disulf ? ? A CYS 142 SG B ? ? 1_555 B CYS 142 SG B ? A CYS 161 B CYS 161 1_555 ? ? ? ? ? ? ? 2.013 ? ? disulf5 disulf ? ? B CYS 33 SG ? ? ? 1_555 B CYS 105 SG ? ? B CYS 52 B CYS 124 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf6 disulf ? ? B CYS 59 SG ? ? ? 1_555 B CYS 131 SG ? ? B CYS 78 B CYS 150 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale one ? D GLC . C1 ? ? ? 1_555 E GLC . O5 ? ? A GLC 201 A GLC 202 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale2 covale both ? B PCA 1 C ? ? ? 1_555 B VAL 2 N ? ? B PCA 20 B VAL 21 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale3 covale both ? C GLC . C1 ? ? ? 1_555 C GLC . O1 ? ? C GLC 1 C GLC 2 1_555 ? ? ? ? ? ? ? 1.389 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 3 ? AA4 ? 4 ? AA5 ? 6 ? AA6 ? 4 ? AA7 ? 3 ? AA8 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 2 ? ALA A 3 ? ILE A 21 ALA A 22 AA1 2 ILE A 133 ? ALA A 140 ? ILE A 152 ALA A 159 AA1 3 LEU A 7 ? GLY A 8 ? LEU A 26 GLY A 27 AA2 1 ILE A 2 ? ALA A 3 ? ILE A 21 ALA A 22 AA2 2 ILE A 133 ? ALA A 140 ? ILE A 152 ALA A 159 AA2 3 LEU A 122 ? TRP A 129 ? LEU A 141 TRP A 148 AA2 4 ASP A 13 ? ASP A 16 ? ASP A 32 ASP A 35 AA3 1 VAL A 47 ? ASP A 48 ? VAL A 66 ASP A 67 AA3 2 ALA A 37 ? TYR A 44 ? ALA A 56 TYR A 63 AA3 3 TRP A 52 ? GLY A 53 ? TRP A 71 GLY A 72 AA4 1 VAL A 47 ? ASP A 48 ? VAL A 66 ASP A 67 AA4 2 ALA A 37 ? TYR A 44 ? ALA A 56 TYR A 63 AA4 3 ILE A 26 ? CYS A 33 ? ILE A 45 CYS A 52 AA4 4 GLU A 67 ? GLU A 72 ? GLU A 86 GLU A 91 AA5 1 VAL A 90 ? THR A 97 ? VAL A 109 THR A 116 AA5 2 ILE A 79 ? TYR A 86 ? ILE A 98 TYR A 105 AA5 3 SER A 113 ? LEU A 117 ? SER A 132 LEU A 136 AA5 4 LYS B 112 ? LEU B 117 ? LYS B 131 LEU B 136 AA5 5 ILE B 79 ? TYR B 86 ? ILE B 98 TYR B 105 AA5 6 VAL B 90 ? THR B 97 ? VAL B 109 THR B 116 AA6 1 LEU B 7 ? GLY B 8 ? LEU B 26 GLY B 27 AA6 2 ILE B 133 ? HIS B 139 ? ILE B 152 HIS B 158 AA6 3 TYR B 124 ? TRP B 129 ? TYR B 143 TRP B 148 AA6 4 ASP B 13 ? ASP B 16 ? ASP B 32 ASP B 35 AA7 1 VAL B 47 ? ASP B 48 ? VAL B 66 ASP B 67 AA7 2 ALA B 37 ? TYR B 44 ? ALA B 56 TYR B 63 AA7 3 TRP B 52 ? GLY B 53 ? TRP B 71 GLY B 72 AA8 1 VAL B 47 ? ASP B 48 ? VAL B 66 ASP B 67 AA8 2 ALA B 37 ? TYR B 44 ? ALA B 56 TYR B 63 AA8 3 ILE B 26 ? CYS B 33 ? ILE B 45 CYS B 52 AA8 4 VAL B 67 ? GLU B 72 ? VAL B 86 GLU B 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 2 ? N ILE A 21 O ALA A 140 ? O ALA A 159 AA1 2 3 O LEU A 136 ? O LEU A 155 N LEU A 7 ? N LEU A 26 AA2 1 2 N ILE A 2 ? N ILE A 21 O ALA A 140 ? O ALA A 159 AA2 2 3 O HIS A 139 ? O HIS A 158 N LYS A 123 ? N LYS A 142 AA2 3 4 O GLY A 127 ? O GLY A 146 N PHE A 15 ? N PHE A 34 AA3 1 2 O VAL A 47 ? O VAL A 66 N TYR A 44 ? N TYR A 63 AA3 2 3 N ILE A 40 ? N ILE A 59 O TRP A 52 ? O TRP A 71 AA4 1 2 O VAL A 47 ? O VAL A 66 N TYR A 44 ? N TYR A 63 AA4 2 3 O LYS A 41 ? O LYS A 60 N GLU A 30 ? N GLU A 49 AA4 3 4 N MET A 31 ? N MET A 50 O VAL A 69 ? O VAL A 88 AA5 1 2 O GLN A 91 ? O GLN A 110 N THR A 85 ? N THR A 104 AA5 2 3 N ALA A 82 ? N ALA A 101 O VAL A 116 ? O VAL A 135 AA5 3 4 N THR A 115 ? N THR A 134 O THR B 115 ? O THR B 134 AA5 4 5 O VAL B 116 ? O VAL B 135 N ALA B 82 ? N ALA B 101 AA5 5 6 N ILE B 83 ? N ILE B 102 O THR B 94 ? O THR B 113 AA6 1 2 N LEU B 7 ? N LEU B 26 O LEU B 136 ? O LEU B 155 AA6 2 3 O ARG B 137 ? O ARG B 156 N SER B 126 ? N SER B 145 AA6 3 4 O TRP B 129 ? O TRP B 148 N ASP B 13 ? N ASP B 32 AA7 1 2 O VAL B 47 ? O VAL B 66 N TYR B 44 ? N TYR B 63 AA7 2 3 N ILE B 40 ? N ILE B 59 O TRP B 52 ? O TRP B 71 AA8 1 2 O VAL B 47 ? O VAL B 66 N TYR B 44 ? N TYR B 63 AA8 2 3 O LYS B 41 ? O LYS B 60 N GLU B 30 ? N GLU B 49 AA8 3 4 N MET B 31 ? N MET B 50 O VAL B 69 ? O VAL B 88 # _atom_sites.entry_id 5YRI _atom_sites.fract_transf_matrix[1][1] 0.022065 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019829 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009228 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 20 20 GLU GLU A . n A 1 2 ILE 2 21 21 ILE ILE A . n A 1 3 ALA 3 22 22 ALA ALA A . n A 1 4 SER 4 23 23 SER SER A . n A 1 5 GLU 5 24 24 GLU GLU A . n A 1 6 TYR 6 25 25 TYR TYR A . n A 1 7 LEU 7 26 26 LEU LEU A . n A 1 8 GLY 8 27 27 GLY GLY A . n A 1 9 GLY 9 28 28 GLY GLY A . n A 1 10 PRO 10 29 29 PRO PRO A . n A 1 11 GLY 11 30 30 GLY GLY A . n A 1 12 GLY 12 31 31 GLY GLY A . n A 1 13 ASP 13 32 32 ASP ASP A . n A 1 14 ALA 14 33 33 ALA ALA A . n A 1 15 PHE 15 34 34 PHE PHE A . n A 1 16 ASP 16 35 35 ASP ASP A . n A 1 17 ASP 17 36 36 ASP ASP A . n A 1 18 LYS 18 37 37 LYS LYS A . n A 1 19 ALA 19 38 38 ALA ALA A . n A 1 20 VAL 20 39 39 VAL VAL A . n A 1 21 ALA 21 40 40 ALA ALA A . n A 1 22 GLN 22 41 41 GLN GLN A . n A 1 23 ASN 23 42 42 ASN ASN A . n A 1 24 GLY 24 43 43 GLY GLY A . n A 1 25 ASP 25 44 44 ASP ASP A . n A 1 26 ILE 26 45 45 ILE ILE A . n A 1 27 THR 27 46 46 THR THR A . n A 1 28 ARG 28 47 47 ARG ARG A . n A 1 29 ILE 29 48 48 ILE ILE A . n A 1 30 GLU 30 49 49 GLU GLU A . n A 1 31 MET 31 50 50 MET MET A . n A 1 32 GLN 32 51 51 GLN GLN A . n A 1 33 CYS 33 52 52 CYS CYS A . n A 1 34 THR 34 53 53 THR THR A . n A 1 35 ASP 35 54 54 ASP ASP A . n A 1 36 VAL 36 55 55 VAL VAL A . n A 1 37 ALA 37 56 56 ALA ALA A . n A 1 38 THR 38 57 57 THR THR A . n A 1 39 TYR 39 58 58 TYR TYR A . n A 1 40 ILE 40 59 59 ILE ILE A . n A 1 41 LYS 41 60 60 LYS LYS A . n A 1 42 LEU 42 61 61 LEU LEU A . n A 1 43 ARG 43 62 62 ARG ARG A . n A 1 44 TYR 44 63 63 TYR TYR A . n A 1 45 GLY 45 64 64 GLY GLY A . n A 1 46 LYS 46 65 65 LYS LYS A . n A 1 47 VAL 47 66 66 VAL VAL A . n A 1 48 ASP 48 67 67 ASP ASP A . n A 1 49 SER 49 68 68 SER SER A . n A 1 50 ARG 50 69 69 ARG ARG A . n A 1 51 GLN 51 70 70 GLN GLN A . n A 1 52 TRP 52 71 71 TRP TRP A . n A 1 53 GLY 53 72 72 GLY GLY A . n A 1 54 TRP 54 73 73 TRP TRP A . n A 1 55 GLY 55 74 74 GLY ALA A . n A 1 56 ASN 56 75 75 ASN ASN A . n A 1 57 GLU 57 76 76 GLU GLU A . n A 1 58 ASN 58 77 77 ASN ASN A . n A 1 59 CYS 59 78 78 CYS CYS A . n A 1 60 ILE 60 79 79 ILE ILE A . n A 1 61 GLN 61 80 80 GLN GLN A . n A 1 62 TRP 62 81 81 TRP TRP A . n A 1 63 SER 63 82 82 SER SER A . n A 1 64 LYS 64 83 83 LYS LYS A . n A 1 65 LYS 65 84 84 LYS LYS A . n A 1 66 GLY 66 85 85 GLY GLY A . n A 1 67 GLU 67 86 86 GLU GLU A . n A 1 68 LYS 68 87 87 LYS LYS A . n A 1 69 VAL 69 88 88 VAL VAL A . n A 1 70 VAL 70 89 89 VAL VAL A . n A 1 71 HIS 71 90 90 HIS HIS A . n A 1 72 GLU 72 91 91 GLU GLU A . n A 1 73 LEU 73 92 92 LEU LEU A . n A 1 74 SER 74 93 93 SER SER A . n A 1 75 SER 75 94 94 SER SER A . n A 1 76 GLY 76 95 95 GLY GLY A . n A 1 77 GLU 77 96 96 GLU GLU A . n A 1 78 TYR 78 97 97 TYR TYR A . n A 1 79 ILE 79 98 98 ILE ILE A . n A 1 80 THR 80 99 99 THR THR A . n A 1 81 SER 81 100 100 SER SER A . n A 1 82 ALA 82 101 101 ALA ALA A . n A 1 83 ILE 83 102 102 ILE ILE A . n A 1 84 VAL 84 103 103 VAL VAL A . n A 1 85 THR 85 104 104 THR THR A . n A 1 86 TYR 86 105 105 TYR TYR A . n A 1 87 GLY 87 106 106 GLY GLY A . n A 1 88 LYS 88 107 107 LYS LYS A . n A 1 89 TYR 89 108 108 TYR TYR A . n A 1 90 VAL 90 109 109 VAL VAL A . n A 1 91 GLN 91 110 110 GLN GLN A . n A 1 92 SER 92 111 111 SER SER A . n A 1 93 ILE 93 112 112 ILE ILE A . n A 1 94 THR 94 113 113 THR THR A . n A 1 95 PHE 95 114 114 PHE PHE A . n A 1 96 LYS 96 115 115 LYS LYS A . n A 1 97 THR 97 116 116 THR THR A . n A 1 98 ASN 98 117 117 ASN ASN A . n A 1 99 LYS 99 118 118 LYS LYS A . n A 1 100 ARG 100 119 119 ARG ARG A . n A 1 101 THR 101 120 120 THR THR A . n A 1 102 LEU 102 121 121 LEU LEU A . n A 1 103 PRO 103 122 122 PRO PRO A . n A 1 104 ARG 104 123 123 ARG ARG A . n A 1 105 CYS 105 124 124 CYS CYS A . n A 1 106 GLY 106 125 125 GLY GLY A . n A 1 107 THR 107 126 126 THR THR A . n A 1 108 SER 108 127 127 SER SER A . n A 1 109 ALA 109 128 128 ALA ALA A . n A 1 110 THR 110 129 129 THR THR A . n A 1 111 GLU 111 130 130 GLU GLU A . n A 1 112 LYS 112 131 131 LYS LYS A . n A 1 113 SER 113 132 132 SER SER A . n A 1 114 VAL 114 133 133 VAL VAL A . n A 1 115 THR 115 134 134 THR THR A . n A 1 116 VAL 116 135 135 VAL VAL A . n A 1 117 LEU 117 136 136 LEU LEU A . n A 1 118 ILE 118 137 137 ILE ILE A . n A 1 119 PRO 119 138 138 PRO PRO A . n A 1 120 GLY 120 139 139 GLY GLY A . n A 1 121 GLY 121 140 140 GLY GLY A . n A 1 122 LEU 122 141 141 LEU LEU A . n A 1 123 LYS 123 142 142 LYS LYS A . n A 1 124 TYR 124 143 143 TYR TYR A . n A 1 125 ILE 125 144 144 ILE ILE A . n A 1 126 SER 126 145 145 SER SER A . n A 1 127 GLY 127 146 146 GLY GLY A . n A 1 128 ARG 128 147 147 ARG ARG A . n A 1 129 TRP 129 148 148 TRP TRP A . n A 1 130 GLY 130 149 149 GLY GLY A . n A 1 131 CYS 131 150 150 CYS CYS A . n A 1 132 ARG 132 151 151 ARG ARG A . n A 1 133 ILE 133 152 152 ILE ILE A . n A 1 134 ASP 134 153 153 ASP ASP A . n A 1 135 GLY 135 154 154 GLY GLY A . n A 1 136 LEU 136 155 155 LEU LEU A . n A 1 137 ARG 137 156 156 ARG ARG A . n A 1 138 PHE 138 157 157 PHE PHE A . n A 1 139 HIS 139 158 158 HIS HIS A . n A 1 140 ALA 140 159 159 ALA ALA A . n A 1 141 LYS 141 160 160 LYS LYS A . n A 1 142 CYS 142 161 161 CYS CYS A . n B 2 1 PCA 1 20 20 PCA PCA B . n B 2 2 VAL 2 21 21 VAL VAL B . n B 2 3 ALA 3 22 22 ALA ALA B . n B 2 4 SER 4 23 23 SER SER B . n B 2 5 GLU 5 24 24 GLU GLU B . n B 2 6 TYR 6 25 25 TYR TYR B . n B 2 7 LEU 7 26 26 LEU LEU B . n B 2 8 GLY 8 27 27 GLY GLY B . n B 2 9 GLY 9 28 28 GLY GLY B . n B 2 10 PRO 10 29 29 PRO PRO B . n B 2 11 GLY 11 30 30 GLY GLY B . n B 2 12 GLY 12 31 31 GLY GLY B . n B 2 13 ASP 13 32 32 ASP ASP B . n B 2 14 ALA 14 33 33 ALA ALA B . n B 2 15 PHE 15 34 34 PHE PHE B . n B 2 16 ASP 16 35 35 ASP ASP B . n B 2 17 ASP 17 36 36 ASP ASP B . n B 2 18 LYS 18 37 37 LYS LYS B . n B 2 19 ALA 19 38 38 ALA ALA B . n B 2 20 LEU 20 39 39 LEU LEU B . n B 2 21 ALA 21 40 40 ALA ALA B . n B 2 22 GLN 22 41 41 GLN GLN B . n B 2 23 ASN 23 42 42 ASN ASN B . n B 2 24 GLY 24 43 43 GLY GLY B . n B 2 25 ASP 25 44 44 ASP ASP B . n B 2 26 ILE 26 45 45 ILE ILE B . n B 2 27 THR 27 46 46 THR THR B . n B 2 28 ARG 28 47 47 ARG ARG B . n B 2 29 ILE 29 48 48 ILE ILE B . n B 2 30 GLU 30 49 49 GLU GLU B . n B 2 31 MET 31 50 50 MET MET B . n B 2 32 GLN 32 51 51 GLN GLN B . n B 2 33 CYS 33 52 52 CYS CYS B . n B 2 34 THR 34 53 53 THR THR B . n B 2 35 ASP 35 54 54 ASP ASP B . n B 2 36 VAL 36 55 55 VAL VAL B . n B 2 37 ALA 37 56 56 ALA ALA B . n B 2 38 THR 38 57 57 THR THR B . n B 2 39 TYR 39 58 58 TYR TYR B . n B 2 40 ILE 40 59 59 ILE ILE B . n B 2 41 LYS 41 60 60 LYS LYS B . n B 2 42 LEU 42 61 61 LEU LEU B . n B 2 43 ARG 43 62 62 ARG ARG B . n B 2 44 TYR 44 63 63 TYR TYR B . n B 2 45 GLY 45 64 64 GLY GLY B . n B 2 46 LYS 46 65 65 LYS LYS B . n B 2 47 VAL 47 66 66 VAL VAL B . n B 2 48 ASP 48 67 67 ASP ASP B . n B 2 49 SER 49 68 68 SER SER B . n B 2 50 ARG 50 69 69 ARG ARG B . n B 2 51 GLN 51 70 70 GLN GLN B . n B 2 52 TRP 52 71 71 TRP TRP B . n B 2 53 GLY 53 72 72 GLY GLY B . n B 2 54 TRP 54 73 73 TRP TRP B . n B 2 55 ALA 55 74 74 ALA ALA B . n B 2 56 ASN 56 75 75 ASN ASN B . n B 2 57 GLU 57 76 76 GLU GLU B . n B 2 58 ASN 58 77 77 ASN ASN B . n B 2 59 CYS 59 78 78 CYS CYS B . n B 2 60 ILE 60 79 79 ILE ILE B . n B 2 61 GLN 61 80 80 GLN GLN B . n B 2 62 TRP 62 81 81 TRP TRP B . n B 2 63 SER 63 82 82 SER SER B . n B 2 64 LYS 64 83 83 LYS LYS B . n B 2 65 LYS 65 84 84 LYS LYS B . n B 2 66 GLY 66 85 85 GLY GLY B . n B 2 67 VAL 67 86 86 VAL VAL B . n B 2 68 LYS 68 87 87 LYS LYS B . n B 2 69 VAL 69 88 88 VAL VAL B . n B 2 70 VAL 70 89 89 VAL VAL B . n B 2 71 HIS 71 90 90 HIS HIS B . n B 2 72 GLU 72 91 91 GLU GLU B . n B 2 73 LEU 73 92 92 LEU LEU B . n B 2 74 SER 74 93 93 SER SER B . n B 2 75 SER 75 94 94 SER SER B . n B 2 76 GLY 76 95 95 GLY GLY B . n B 2 77 GLU 77 96 96 GLU GLU B . n B 2 78 TYR 78 97 97 TYR TYR B . n B 2 79 ILE 79 98 98 ILE ILE B . n B 2 80 THR 80 99 99 THR THR B . n B 2 81 SER 81 100 100 SER SER B . n B 2 82 ALA 82 101 101 ALA ALA B . n B 2 83 ILE 83 102 102 ILE ILE B . n B 2 84 VAL 84 103 103 VAL VAL B . n B 2 85 THR 85 104 104 THR THR B . n B 2 86 TYR 86 105 105 TYR TYR B . n B 2 87 GLY 87 106 106 GLY GLY B . n B 2 88 LYS 88 107 107 LYS LYS B . n B 2 89 TYR 89 108 108 TYR TYR B . n B 2 90 VAL 90 109 109 VAL VAL B . n B 2 91 GLN 91 110 110 GLN GLN B . n B 2 92 SER 92 111 111 SER SER B . n B 2 93 ILE 93 112 112 ILE ILE B . n B 2 94 THR 94 113 113 THR THR B . n B 2 95 PHE 95 114 114 PHE PHE B . n B 2 96 LYS 96 115 115 LYS LYS B . n B 2 97 THR 97 116 116 THR THR B . n B 2 98 ASN 98 117 117 ASN ASN B . n B 2 99 LYS 99 118 118 LYS LYS B . n B 2 100 ARG 100 119 119 ARG ARG B . n B 2 101 THR 101 120 120 THR THR B . n B 2 102 LEU 102 121 121 LEU LEU B . n B 2 103 PRO 103 122 122 PRO PRO B . n B 2 104 ARG 104 123 123 ARG ARG B . n B 2 105 CYS 105 124 124 CYS CYS B . n B 2 106 GLY 106 125 125 GLY GLY B . n B 2 107 THR 107 126 126 THR THR B . n B 2 108 SER 108 127 127 SER SER B . n B 2 109 ALA 109 128 128 ALA ALA B . n B 2 110 THR 110 129 129 THR THR B . n B 2 111 GLU 111 130 130 GLU GLU B . n B 2 112 LYS 112 131 131 LYS LYS B . n B 2 113 SER 113 132 132 SER SER B . n B 2 114 VAL 114 133 133 VAL VAL B . n B 2 115 THR 115 134 134 THR THR B . n B 2 116 VAL 116 135 135 VAL VAL B . n B 2 117 LEU 117 136 136 LEU LEU B . n B 2 118 ILE 118 137 137 ILE ILE B . n B 2 119 PRO 119 138 138 PRO PRO B . n B 2 120 GLY 120 139 139 GLY GLY B . n B 2 121 GLY 121 140 140 GLY GLY B . n B 2 122 LEU 122 141 141 LEU LEU B . n B 2 123 LYS 123 142 142 LYS LYS B . n B 2 124 TYR 124 143 143 TYR TYR B . n B 2 125 ILE 125 144 144 ILE ILE B . n B 2 126 SER 126 145 145 SER SER B . n B 2 127 GLY 127 146 146 GLY GLY B . n B 2 128 ARG 128 147 147 ARG ARG B . n B 2 129 TRP 129 148 148 TRP TRP B . n B 2 130 GLY 130 149 149 GLY GLY B . n B 2 131 CYS 131 150 150 CYS CYS B . n B 2 132 ARG 132 151 151 ARG ARG B . n B 2 133 ILE 133 152 152 ILE ILE B . n B 2 134 ASP 134 153 153 ASP ASP B . n B 2 135 GLY 135 154 154 GLY GLY B . n B 2 136 LEU 136 155 155 LEU LEU B . n B 2 137 ARG 137 156 156 ARG ARG B . n B 2 138 PHE 138 157 157 PHE PHE B . n B 2 139 HIS 139 158 158 HIS HIS B . n B 2 140 ALA 140 159 159 ALA ALA B . n B 2 141 LYS 141 160 160 LYS LYS B . n B 2 142 CYS 142 161 161 CYS CYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GLC 1 201 1 GLC GLC A . E 4 GLC 1 202 2 GLC GLC A . F 5 SO4 1 203 2 SO4 SO4 A . G 5 SO4 1 203 1 SO4 SO4 B . H 5 SO4 1 204 3 SO4 SO4 B . I 6 HOH 1 301 175 HOH HOH A . I 6 HOH 2 302 166 HOH HOH A . I 6 HOH 3 303 31 HOH HOH A . I 6 HOH 4 304 178 HOH HOH A . I 6 HOH 5 305 229 HOH HOH A . I 6 HOH 6 306 198 HOH HOH A . I 6 HOH 7 307 400 HOH HOH A . I 6 HOH 8 308 248 HOH HOH A . I 6 HOH 9 309 199 HOH HOH A . I 6 HOH 10 310 288 HOH HOH A . I 6 HOH 11 311 99 HOH HOH A . I 6 HOH 12 312 67 HOH HOH A . I 6 HOH 13 313 297 HOH HOH A . I 6 HOH 14 314 119 HOH HOH A . I 6 HOH 15 315 239 HOH HOH A . I 6 HOH 16 316 219 HOH HOH A . I 6 HOH 17 317 151 HOH HOH A . I 6 HOH 18 318 100 HOH HOH A . I 6 HOH 19 319 177 HOH HOH A . I 6 HOH 20 320 183 HOH HOH A . I 6 HOH 21 321 125 HOH HOH A . I 6 HOH 22 322 189 HOH HOH A . I 6 HOH 23 323 217 HOH HOH A . I 6 HOH 24 324 4 HOH HOH A . I 6 HOH 25 325 24 HOH HOH A . I 6 HOH 26 326 231 HOH HOH A . I 6 HOH 27 327 35 HOH HOH A . I 6 HOH 28 328 169 HOH HOH A . I 6 HOH 29 329 7 HOH HOH A . I 6 HOH 30 330 156 HOH HOH A . I 6 HOH 31 331 18 HOH HOH A . I 6 HOH 32 332 425 HOH HOH A . I 6 HOH 33 333 182 HOH HOH A . I 6 HOH 34 334 349 HOH HOH A . I 6 HOH 35 335 139 HOH HOH A . I 6 HOH 36 336 74 HOH HOH A . I 6 HOH 37 337 358 HOH HOH A . I 6 HOH 38 338 10 HOH HOH A . I 6 HOH 39 339 141 HOH HOH A . I 6 HOH 40 340 94 HOH HOH A . I 6 HOH 41 341 355 HOH HOH A . I 6 HOH 42 342 255 HOH HOH A . I 6 HOH 43 343 92 HOH HOH A . I 6 HOH 44 344 95 HOH HOH A . I 6 HOH 45 345 120 HOH HOH A . I 6 HOH 46 346 33 HOH HOH A . I 6 HOH 47 347 278 HOH HOH A . I 6 HOH 48 348 127 HOH HOH A . I 6 HOH 49 349 338 HOH HOH A . I 6 HOH 50 350 25 HOH HOH A . I 6 HOH 51 351 21 HOH HOH A . I 6 HOH 52 352 89 HOH HOH A . I 6 HOH 53 353 333 HOH HOH A . I 6 HOH 54 354 16 HOH HOH A . I 6 HOH 55 355 9 HOH HOH A . I 6 HOH 56 356 20 HOH HOH A . I 6 HOH 57 357 19 HOH HOH A . I 6 HOH 58 358 161 HOH HOH A . I 6 HOH 59 359 28 HOH HOH A . I 6 HOH 60 360 5 HOH HOH A . I 6 HOH 61 361 157 HOH HOH A . I 6 HOH 62 362 85 HOH HOH A . I 6 HOH 63 363 109 HOH HOH A . I 6 HOH 64 364 52 HOH HOH A . I 6 HOH 65 365 116 HOH HOH A . I 6 HOH 66 366 361 HOH HOH A . I 6 HOH 67 367 202 HOH HOH A . I 6 HOH 68 368 57 HOH HOH A . I 6 HOH 69 369 167 HOH HOH A . I 6 HOH 70 370 26 HOH HOH A . I 6 HOH 71 371 45 HOH HOH A . I 6 HOH 72 372 328 HOH HOH A . I 6 HOH 73 373 47 HOH HOH A . I 6 HOH 74 374 131 HOH HOH A . I 6 HOH 75 375 326 HOH HOH A . I 6 HOH 76 376 220 HOH HOH A . I 6 HOH 77 377 424 HOH HOH A . I 6 HOH 78 378 179 HOH HOH A . I 6 HOH 79 379 206 HOH HOH A . I 6 HOH 80 380 111 HOH HOH A . I 6 HOH 81 381 75 HOH HOH A . I 6 HOH 82 382 3 HOH HOH A . I 6 HOH 83 383 56 HOH HOH A . I 6 HOH 84 384 50 HOH HOH A . I 6 HOH 85 385 370 HOH HOH A . I 6 HOH 86 386 237 HOH HOH A . I 6 HOH 87 387 290 HOH HOH A . I 6 HOH 88 388 36 HOH HOH A . I 6 HOH 89 389 72 HOH HOH A . I 6 HOH 90 390 386 HOH HOH A . I 6 HOH 91 391 391 HOH HOH A . I 6 HOH 92 392 421 HOH HOH A . I 6 HOH 93 393 8 HOH HOH A . I 6 HOH 94 394 375 HOH HOH A . I 6 HOH 95 395 245 HOH HOH A . I 6 HOH 96 396 222 HOH HOH A . I 6 HOH 97 397 261 HOH HOH A . I 6 HOH 98 398 281 HOH HOH A . I 6 HOH 99 399 17 HOH HOH A . I 6 HOH 100 400 246 HOH HOH A . I 6 HOH 101 401 14 HOH HOH A . I 6 HOH 102 402 83 HOH HOH A . I 6 HOH 103 403 145 HOH HOH A . I 6 HOH 104 404 314 HOH HOH A . I 6 HOH 105 405 103 HOH HOH A . I 6 HOH 106 406 395 HOH HOH A . I 6 HOH 107 407 86 HOH HOH A . I 6 HOH 108 408 23 HOH HOH A . I 6 HOH 109 409 254 HOH HOH A . I 6 HOH 110 410 354 HOH HOH A . I 6 HOH 111 411 240 HOH HOH A . I 6 HOH 112 412 374 HOH HOH A . I 6 HOH 113 413 128 HOH HOH A . I 6 HOH 114 414 153 HOH HOH A . I 6 HOH 115 415 336 HOH HOH A . I 6 HOH 116 416 115 HOH HOH A . I 6 HOH 117 417 107 HOH HOH A . I 6 HOH 118 418 42 HOH HOH A . I 6 HOH 119 419 332 HOH HOH A . I 6 HOH 120 420 150 HOH HOH A . I 6 HOH 121 421 195 HOH HOH A . I 6 HOH 122 422 140 HOH HOH A . I 6 HOH 123 423 299 HOH HOH A . I 6 HOH 124 424 80 HOH HOH A . I 6 HOH 125 425 228 HOH HOH A . I 6 HOH 126 426 371 HOH HOH A . I 6 HOH 127 427 149 HOH HOH A . I 6 HOH 128 428 300 HOH HOH A . I 6 HOH 129 429 155 HOH HOH A . I 6 HOH 130 430 352 HOH HOH A . I 6 HOH 131 431 313 HOH HOH A . I 6 HOH 132 432 312 HOH HOH A . I 6 HOH 133 433 320 HOH HOH A . I 6 HOH 134 434 286 HOH HOH A . I 6 HOH 135 435 262 HOH HOH A . I 6 HOH 136 436 272 HOH HOH A . I 6 HOH 137 437 303 HOH HOH A . I 6 HOH 138 438 408 HOH HOH A . I 6 HOH 139 439 233 HOH HOH A . I 6 HOH 140 440 163 HOH HOH A . I 6 HOH 141 441 266 HOH HOH A . I 6 HOH 142 442 159 HOH HOH A . I 6 HOH 143 443 407 HOH HOH A . I 6 HOH 144 444 236 HOH HOH A . I 6 HOH 145 445 211 HOH HOH A . I 6 HOH 146 446 271 HOH HOH A . I 6 HOH 147 447 104 HOH HOH A . I 6 HOH 148 448 382 HOH HOH A . I 6 HOH 149 449 351 HOH HOH A . I 6 HOH 150 450 191 HOH HOH A . I 6 HOH 151 451 423 HOH HOH A . I 6 HOH 152 452 135 HOH HOH A . I 6 HOH 153 453 347 HOH HOH A . I 6 HOH 154 454 295 HOH HOH A . I 6 HOH 155 455 88 HOH HOH A . I 6 HOH 156 456 158 HOH HOH A . I 6 HOH 157 457 426 HOH HOH A . I 6 HOH 158 458 186 HOH HOH A . I 6 HOH 159 459 249 HOH HOH A . I 6 HOH 160 460 162 HOH HOH A . I 6 HOH 161 461 308 HOH HOH A . I 6 HOH 162 462 250 HOH HOH A . I 6 HOH 163 463 188 HOH HOH A . I 6 HOH 164 464 144 HOH HOH A . I 6 HOH 165 465 224 HOH HOH A . I 6 HOH 166 466 285 HOH HOH A . I 6 HOH 167 467 373 HOH HOH A . I 6 HOH 168 468 362 HOH HOH A . I 6 HOH 169 469 160 HOH HOH A . I 6 HOH 170 470 197 HOH HOH A . I 6 HOH 171 471 147 HOH HOH A . I 6 HOH 172 472 232 HOH HOH A . I 6 HOH 173 473 345 HOH HOH A . I 6 HOH 174 474 227 HOH HOH A . I 6 HOH 175 475 403 HOH HOH A . I 6 HOH 176 476 399 HOH HOH A . I 6 HOH 177 477 389 HOH HOH A . I 6 HOH 178 478 366 HOH HOH A . I 6 HOH 179 479 305 HOH HOH A . I 6 HOH 180 480 401 HOH HOH A . I 6 HOH 181 481 306 HOH HOH A . I 6 HOH 182 482 404 HOH HOH A . I 6 HOH 183 483 234 HOH HOH A . I 6 HOH 184 484 256 HOH HOH A . I 6 HOH 185 485 319 HOH HOH A . I 6 HOH 186 486 302 HOH HOH A . I 6 HOH 187 487 363 HOH HOH A . I 6 HOH 188 488 315 HOH HOH A . I 6 HOH 189 489 208 HOH HOH A . I 6 HOH 190 490 282 HOH HOH A . I 6 HOH 191 491 291 HOH HOH A . I 6 HOH 192 492 390 HOH HOH A . I 6 HOH 193 493 152 HOH HOH A . I 6 HOH 194 494 394 HOH HOH A . I 6 HOH 195 495 242 HOH HOH A . I 6 HOH 196 496 221 HOH HOH A . I 6 HOH 197 497 309 HOH HOH A . I 6 HOH 198 498 279 HOH HOH A . I 6 HOH 199 499 327 HOH HOH A . J 6 HOH 1 301 215 HOH HOH B . J 6 HOH 2 302 324 HOH HOH B . J 6 HOH 3 303 137 HOH HOH B . J 6 HOH 4 304 294 HOH HOH B . J 6 HOH 5 305 263 HOH HOH B . J 6 HOH 6 306 251 HOH HOH B . J 6 HOH 7 307 112 HOH HOH B . J 6 HOH 8 308 429 HOH HOH B . J 6 HOH 9 309 264 HOH HOH B . J 6 HOH 10 310 68 HOH HOH B . J 6 HOH 11 311 38 HOH HOH B . J 6 HOH 12 312 84 HOH HOH B . J 6 HOH 13 313 76 HOH HOH B . J 6 HOH 14 314 292 HOH HOH B . J 6 HOH 15 315 11 HOH HOH B . J 6 HOH 16 316 387 HOH HOH B . J 6 HOH 17 317 101 HOH HOH B . J 6 HOH 18 318 129 HOH HOH B . J 6 HOH 19 319 82 HOH HOH B . J 6 HOH 20 320 165 HOH HOH B . J 6 HOH 21 321 87 HOH HOH B . J 6 HOH 22 322 34 HOH HOH B . J 6 HOH 23 323 411 HOH HOH B . J 6 HOH 24 324 81 HOH HOH B . J 6 HOH 25 325 383 HOH HOH B . J 6 HOH 26 326 368 HOH HOH B . J 6 HOH 27 327 146 HOH HOH B . J 6 HOH 28 328 118 HOH HOH B . J 6 HOH 29 329 171 HOH HOH B . J 6 HOH 30 330 49 HOH HOH B . J 6 HOH 31 331 126 HOH HOH B . J 6 HOH 32 332 330 HOH HOH B . J 6 HOH 33 333 257 HOH HOH B . J 6 HOH 34 334 134 HOH HOH B . J 6 HOH 35 335 343 HOH HOH B . J 6 HOH 36 336 415 HOH HOH B . J 6 HOH 37 337 37 HOH HOH B . J 6 HOH 38 338 138 HOH HOH B . J 6 HOH 39 339 90 HOH HOH B . J 6 HOH 40 340 301 HOH HOH B . J 6 HOH 41 341 318 HOH HOH B . J 6 HOH 42 342 32 HOH HOH B . J 6 HOH 43 343 64 HOH HOH B . J 6 HOH 44 344 53 HOH HOH B . J 6 HOH 45 345 105 HOH HOH B . J 6 HOH 46 346 122 HOH HOH B . J 6 HOH 47 347 6 HOH HOH B . J 6 HOH 48 348 260 HOH HOH B . J 6 HOH 49 349 61 HOH HOH B . J 6 HOH 50 350 173 HOH HOH B . J 6 HOH 51 351 55 HOH HOH B . J 6 HOH 52 352 316 HOH HOH B . J 6 HOH 53 353 70 HOH HOH B . J 6 HOH 54 354 143 HOH HOH B . J 6 HOH 55 355 44 HOH HOH B . J 6 HOH 56 356 275 HOH HOH B . J 6 HOH 57 357 27 HOH HOH B . J 6 HOH 58 358 428 HOH HOH B . J 6 HOH 59 359 148 HOH HOH B . J 6 HOH 60 360 218 HOH HOH B . J 6 HOH 61 361 369 HOH HOH B . J 6 HOH 62 362 225 HOH HOH B . J 6 HOH 63 363 2 HOH HOH B . J 6 HOH 64 364 1 HOH HOH B . J 6 HOH 65 365 322 HOH HOH B . J 6 HOH 66 366 78 HOH HOH B . J 6 HOH 67 367 22 HOH HOH B . J 6 HOH 68 368 46 HOH HOH B . J 6 HOH 69 369 54 HOH HOH B . J 6 HOH 70 370 58 HOH HOH B . J 6 HOH 71 371 60 HOH HOH B . J 6 HOH 72 372 96 HOH HOH B . J 6 HOH 73 373 214 HOH HOH B . J 6 HOH 74 374 79 HOH HOH B . J 6 HOH 75 375 13 HOH HOH B . J 6 HOH 76 376 379 HOH HOH B . J 6 HOH 77 377 185 HOH HOH B . J 6 HOH 78 378 43 HOH HOH B . J 6 HOH 79 379 12 HOH HOH B . J 6 HOH 80 380 350 HOH HOH B . J 6 HOH 81 381 77 HOH HOH B . J 6 HOH 82 382 365 HOH HOH B . J 6 HOH 83 383 15 HOH HOH B . J 6 HOH 84 384 59 HOH HOH B . J 6 HOH 85 385 210 HOH HOH B . J 6 HOH 86 386 226 HOH HOH B . J 6 HOH 87 387 51 HOH HOH B . J 6 HOH 88 388 65 HOH HOH B . J 6 HOH 89 389 201 HOH HOH B . J 6 HOH 90 390 108 HOH HOH B . J 6 HOH 91 391 39 HOH HOH B . J 6 HOH 92 392 106 HOH HOH B . J 6 HOH 93 393 293 HOH HOH B . J 6 HOH 94 394 29 HOH HOH B . J 6 HOH 95 395 154 HOH HOH B . J 6 HOH 96 396 30 HOH HOH B . J 6 HOH 97 397 396 HOH HOH B . J 6 HOH 98 398 321 HOH HOH B . J 6 HOH 99 399 172 HOH HOH B . J 6 HOH 100 400 114 HOH HOH B . J 6 HOH 101 401 97 HOH HOH B . J 6 HOH 102 402 367 HOH HOH B . J 6 HOH 103 403 212 HOH HOH B . J 6 HOH 104 404 164 HOH HOH B . J 6 HOH 105 405 334 HOH HOH B . J 6 HOH 106 406 130 HOH HOH B . J 6 HOH 107 407 174 HOH HOH B . J 6 HOH 108 408 41 HOH HOH B . J 6 HOH 109 409 98 HOH HOH B . J 6 HOH 110 410 48 HOH HOH B . J 6 HOH 111 411 63 HOH HOH B . J 6 HOH 112 412 73 HOH HOH B . J 6 HOH 113 413 69 HOH HOH B . J 6 HOH 114 414 62 HOH HOH B . J 6 HOH 115 415 91 HOH HOH B . J 6 HOH 116 416 93 HOH HOH B . J 6 HOH 117 417 102 HOH HOH B . J 6 HOH 118 418 384 HOH HOH B . J 6 HOH 119 419 40 HOH HOH B . J 6 HOH 120 420 66 HOH HOH B . J 6 HOH 121 421 230 HOH HOH B . J 6 HOH 122 422 276 HOH HOH B . J 6 HOH 123 423 427 HOH HOH B . J 6 HOH 124 424 381 HOH HOH B . J 6 HOH 125 425 419 HOH HOH B . J 6 HOH 126 426 117 HOH HOH B . J 6 HOH 127 427 244 HOH HOH B . J 6 HOH 128 428 142 HOH HOH B . J 6 HOH 129 429 393 HOH HOH B . J 6 HOH 130 430 346 HOH HOH B . J 6 HOH 131 431 247 HOH HOH B . J 6 HOH 132 432 252 HOH HOH B . J 6 HOH 133 433 238 HOH HOH B . J 6 HOH 134 434 409 HOH HOH B . J 6 HOH 135 435 340 HOH HOH B . J 6 HOH 136 436 270 HOH HOH B . J 6 HOH 137 437 121 HOH HOH B . J 6 HOH 138 438 357 HOH HOH B . J 6 HOH 139 439 385 HOH HOH B . J 6 HOH 140 440 289 HOH HOH B . J 6 HOH 141 441 180 HOH HOH B . J 6 HOH 142 442 372 HOH HOH B . J 6 HOH 143 443 331 HOH HOH B . J 6 HOH 144 444 417 HOH HOH B . J 6 HOH 145 445 170 HOH HOH B . J 6 HOH 146 446 422 HOH HOH B . J 6 HOH 147 447 110 HOH HOH B . J 6 HOH 148 448 193 HOH HOH B . J 6 HOH 149 449 235 HOH HOH B . J 6 HOH 150 450 430 HOH HOH B . J 6 HOH 151 451 339 HOH HOH B . J 6 HOH 152 452 431 HOH HOH B . J 6 HOH 153 453 273 HOH HOH B . J 6 HOH 154 454 196 HOH HOH B . J 6 HOH 155 455 207 HOH HOH B . J 6 HOH 156 456 398 HOH HOH B . J 6 HOH 157 457 132 HOH HOH B . J 6 HOH 158 458 304 HOH HOH B . J 6 HOH 159 459 241 HOH HOH B . J 6 HOH 160 460 123 HOH HOH B . J 6 HOH 161 461 192 HOH HOH B . J 6 HOH 162 462 287 HOH HOH B . J 6 HOH 163 463 113 HOH HOH B . J 6 HOH 164 464 200 HOH HOH B . J 6 HOH 165 465 71 HOH HOH B . J 6 HOH 166 466 418 HOH HOH B . J 6 HOH 167 467 307 HOH HOH B . J 6 HOH 168 468 269 HOH HOH B . J 6 HOH 169 469 268 HOH HOH B . J 6 HOH 170 470 280 HOH HOH B . J 6 HOH 171 471 329 HOH HOH B . J 6 HOH 172 472 187 HOH HOH B . J 6 HOH 173 473 133 HOH HOH B . J 6 HOH 174 474 364 HOH HOH B . J 6 HOH 175 475 258 HOH HOH B . J 6 HOH 176 476 243 HOH HOH B . J 6 HOH 177 477 253 HOH HOH B . J 6 HOH 178 478 380 HOH HOH B . J 6 HOH 179 479 190 HOH HOH B . J 6 HOH 180 480 176 HOH HOH B . J 6 HOH 181 481 402 HOH HOH B . J 6 HOH 182 482 416 HOH HOH B . J 6 HOH 183 483 223 HOH HOH B . J 6 HOH 184 484 376 HOH HOH B . J 6 HOH 185 485 341 HOH HOH B . J 6 HOH 186 486 344 HOH HOH B . J 6 HOH 187 487 337 HOH HOH B . J 6 HOH 188 488 298 HOH HOH B . J 6 HOH 189 489 356 HOH HOH B . J 6 HOH 190 490 412 HOH HOH B . J 6 HOH 191 491 342 HOH HOH B . J 6 HOH 192 492 265 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900006 _pdbx_molecule_features.name trehalose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900006 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2430 ? 1 MORE -32 ? 1 'SSA (A^2)' 12920 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-29 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 2 1 2023-11-22 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Polymer sequence' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' 'Refinement description' 10 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' entity_name_com 5 2 'Structure model' entity_poly 6 2 'Structure model' pdbx_branch_scheme 7 2 'Structure model' pdbx_chem_comp_identifier 8 2 'Structure model' pdbx_entity_branch 9 2 'Structure model' pdbx_entity_branch_descriptor 10 2 'Structure model' pdbx_entity_branch_link 11 2 'Structure model' pdbx_entity_branch_list 12 2 'Structure model' pdbx_entity_nonpoly 13 2 'Structure model' pdbx_molecule_features 14 2 'Structure model' pdbx_nonpoly_scheme 15 2 'Structure model' pdbx_struct_assembly_gen 16 2 'Structure model' struct_asym 17 2 'Structure model' struct_conn 18 2 'Structure model' struct_site 19 2 'Structure model' struct_site_gen 20 3 'Structure model' chem_comp 21 3 'Structure model' chem_comp_atom 22 3 'Structure model' chem_comp_bond 23 3 'Structure model' database_2 24 3 'Structure model' pdbx_initial_refinement_model 25 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_asym_id' 10 2 'Structure model' '_atom_site.label_atom_id' 11 2 'Structure model' '_atom_site.label_comp_id' 12 2 'Structure model' '_atom_site.label_entity_id' 13 2 'Structure model' '_atom_site.type_symbol' 14 2 'Structure model' '_chem_comp.name' 15 2 'Structure model' '_chem_comp.type' 16 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 17 2 'Structure model' '_pdbx_entity_nonpoly.entity_id' 18 2 'Structure model' '_pdbx_entity_nonpoly.name' 19 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 20 2 'Structure model' '_struct_conn.pdbx_dist_value' 21 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 3 'Structure model' '_chem_comp.pdbx_synonyms' 37 3 'Structure model' '_database_2.pdbx_DOI' 38 3 'Structure model' '_database_2.pdbx_database_accession' 39 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5YRI _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;The genebank accession for PPL3-a is AB425240.2. For PPL3-b, the genebank assession is LC334154.1. The N-terminus of subunit after signal peptide removal is Gln20-Val21 from mRNA, but is changed to pGlu20-Val21 or Gln20-Ile21 because of post-translational modifications. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 53 ? ? -125.31 -137.72 2 1 TRP A 73 ? ? 33.70 62.22 3 1 LYS A 84 ? ? -96.33 -68.23 4 1 THR B 53 ? ? -137.83 -135.00 5 1 TRP B 73 ? ? 37.57 61.59 6 1 ARG B 151 ? ? -136.49 -156.52 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 499 ? 5.90 . 2 1 O ? B HOH 492 ? 6.33 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TRP 81 ? CG ? A TRP 62 CG 2 1 Y 1 A TRP 81 ? CD1 ? A TRP 62 CD1 3 1 Y 1 A TRP 81 ? CD2 ? A TRP 62 CD2 4 1 Y 1 A TRP 81 ? NE1 ? A TRP 62 NE1 5 1 Y 1 A TRP 81 ? CE2 ? A TRP 62 CE2 6 1 Y 1 A TRP 81 ? CE3 ? A TRP 62 CE3 7 1 Y 1 A TRP 81 ? CZ2 ? A TRP 62 CZ2 8 1 Y 1 A TRP 81 ? CZ3 ? A TRP 62 CZ3 9 1 Y 1 A TRP 81 ? CH2 ? A TRP 62 CH2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLC C1 C N S 88 GLC C2 C N R 89 GLC C3 C N S 90 GLC C4 C N S 91 GLC C5 C N R 92 GLC C6 C N N 93 GLC O1 O N N 94 GLC O2 O N N 95 GLC O3 O N N 96 GLC O4 O N N 97 GLC O5 O N N 98 GLC O6 O N N 99 GLC H1 H N N 100 GLC H2 H N N 101 GLC H3 H N N 102 GLC H4 H N N 103 GLC H5 H N N 104 GLC H61 H N N 105 GLC H62 H N N 106 GLC HO1 H N N 107 GLC HO2 H N N 108 GLC HO3 H N N 109 GLC HO4 H N N 110 GLC HO6 H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MET N N N N 254 MET CA C N S 255 MET C C N N 256 MET O O N N 257 MET CB C N N 258 MET CG C N N 259 MET SD S N N 260 MET CE C N N 261 MET OXT O N N 262 MET H H N N 263 MET H2 H N N 264 MET HA H N N 265 MET HB2 H N N 266 MET HB3 H N N 267 MET HG2 H N N 268 MET HG3 H N N 269 MET HE1 H N N 270 MET HE2 H N N 271 MET HE3 H N N 272 MET HXT H N N 273 PCA N N N N 274 PCA CA C N S 275 PCA CB C N N 276 PCA CG C N N 277 PCA CD C N N 278 PCA OE O N N 279 PCA C C N N 280 PCA O O N N 281 PCA OXT O N N 282 PCA H H N N 283 PCA HA H N N 284 PCA HB2 H N N 285 PCA HB3 H N N 286 PCA HG2 H N N 287 PCA HG3 H N N 288 PCA HXT H N N 289 PHE N N N N 290 PHE CA C N S 291 PHE C C N N 292 PHE O O N N 293 PHE CB C N N 294 PHE CG C Y N 295 PHE CD1 C Y N 296 PHE CD2 C Y N 297 PHE CE1 C Y N 298 PHE CE2 C Y N 299 PHE CZ C Y N 300 PHE OXT O N N 301 PHE H H N N 302 PHE H2 H N N 303 PHE HA H N N 304 PHE HB2 H N N 305 PHE HB3 H N N 306 PHE HD1 H N N 307 PHE HD2 H N N 308 PHE HE1 H N N 309 PHE HE2 H N N 310 PHE HZ H N N 311 PHE HXT H N N 312 PRO N N N N 313 PRO CA C N S 314 PRO C C N N 315 PRO O O N N 316 PRO CB C N N 317 PRO CG C N N 318 PRO CD C N N 319 PRO OXT O N N 320 PRO H H N N 321 PRO HA H N N 322 PRO HB2 H N N 323 PRO HB3 H N N 324 PRO HG2 H N N 325 PRO HG3 H N N 326 PRO HD2 H N N 327 PRO HD3 H N N 328 PRO HXT H N N 329 SER N N N N 330 SER CA C N S 331 SER C C N N 332 SER O O N N 333 SER CB C N N 334 SER OG O N N 335 SER OXT O N N 336 SER H H N N 337 SER H2 H N N 338 SER HA H N N 339 SER HB2 H N N 340 SER HB3 H N N 341 SER HG H N N 342 SER HXT H N N 343 SO4 S S N N 344 SO4 O1 O N N 345 SO4 O2 O N N 346 SO4 O3 O N N 347 SO4 O4 O N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TRP N N N N 366 TRP CA C N S 367 TRP C C N N 368 TRP O O N N 369 TRP CB C N N 370 TRP CG C Y N 371 TRP CD1 C Y N 372 TRP CD2 C Y N 373 TRP NE1 N Y N 374 TRP CE2 C Y N 375 TRP CE3 C Y N 376 TRP CZ2 C Y N 377 TRP CZ3 C Y N 378 TRP CH2 C Y N 379 TRP OXT O N N 380 TRP H H N N 381 TRP H2 H N N 382 TRP HA H N N 383 TRP HB2 H N N 384 TRP HB3 H N N 385 TRP HD1 H N N 386 TRP HE1 H N N 387 TRP HE3 H N N 388 TRP HZ2 H N N 389 TRP HZ3 H N N 390 TRP HH2 H N N 391 TRP HXT H N N 392 TYR N N N N 393 TYR CA C N S 394 TYR C C N N 395 TYR O O N N 396 TYR CB C N N 397 TYR CG C Y N 398 TYR CD1 C Y N 399 TYR CD2 C Y N 400 TYR CE1 C Y N 401 TYR CE2 C Y N 402 TYR CZ C Y N 403 TYR OH O N N 404 TYR OXT O N N 405 TYR H H N N 406 TYR H2 H N N 407 TYR HA H N N 408 TYR HB2 H N N 409 TYR HB3 H N N 410 TYR HD1 H N N 411 TYR HD2 H N N 412 TYR HE1 H N N 413 TYR HE2 H N N 414 TYR HH H N N 415 TYR HXT H N N 416 VAL N N N N 417 VAL CA C N S 418 VAL C C N N 419 VAL O O N N 420 VAL CB C N N 421 VAL CG1 C N N 422 VAL CG2 C N N 423 VAL OXT O N N 424 VAL H H N N 425 VAL H2 H N N 426 VAL HA H N N 427 VAL HB H N N 428 VAL HG11 H N N 429 VAL HG12 H N N 430 VAL HG13 H N N 431 VAL HG21 H N N 432 VAL HG22 H N N 433 VAL HG23 H N N 434 VAL HXT H N N 435 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLC C1 C2 sing N N 83 GLC C1 O1 sing N N 84 GLC C1 O5 sing N N 85 GLC C1 H1 sing N N 86 GLC C2 C3 sing N N 87 GLC C2 O2 sing N N 88 GLC C2 H2 sing N N 89 GLC C3 C4 sing N N 90 GLC C3 O3 sing N N 91 GLC C3 H3 sing N N 92 GLC C4 C5 sing N N 93 GLC C4 O4 sing N N 94 GLC C4 H4 sing N N 95 GLC C5 C6 sing N N 96 GLC C5 O5 sing N N 97 GLC C5 H5 sing N N 98 GLC C6 O6 sing N N 99 GLC C6 H61 sing N N 100 GLC C6 H62 sing N N 101 GLC O1 HO1 sing N N 102 GLC O2 HO2 sing N N 103 GLC O3 HO3 sing N N 104 GLC O4 HO4 sing N N 105 GLC O6 HO6 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MET N CA sing N N 242 MET N H sing N N 243 MET N H2 sing N N 244 MET CA C sing N N 245 MET CA CB sing N N 246 MET CA HA sing N N 247 MET C O doub N N 248 MET C OXT sing N N 249 MET CB CG sing N N 250 MET CB HB2 sing N N 251 MET CB HB3 sing N N 252 MET CG SD sing N N 253 MET CG HG2 sing N N 254 MET CG HG3 sing N N 255 MET SD CE sing N N 256 MET CE HE1 sing N N 257 MET CE HE2 sing N N 258 MET CE HE3 sing N N 259 MET OXT HXT sing N N 260 PCA N CA sing N N 261 PCA N CD sing N N 262 PCA N H sing N N 263 PCA CA CB sing N N 264 PCA CA C sing N N 265 PCA CA HA sing N N 266 PCA CB CG sing N N 267 PCA CB HB2 sing N N 268 PCA CB HB3 sing N N 269 PCA CG CD sing N N 270 PCA CG HG2 sing N N 271 PCA CG HG3 sing N N 272 PCA CD OE doub N N 273 PCA C O doub N N 274 PCA C OXT sing N N 275 PCA OXT HXT sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 SO4 S O1 doub N N 330 SO4 S O2 doub N N 331 SO4 S O3 sing N N 332 SO4 S O4 sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TRP N CA sing N N 350 TRP N H sing N N 351 TRP N H2 sing N N 352 TRP CA C sing N N 353 TRP CA CB sing N N 354 TRP CA HA sing N N 355 TRP C O doub N N 356 TRP C OXT sing N N 357 TRP CB CG sing N N 358 TRP CB HB2 sing N N 359 TRP CB HB3 sing N N 360 TRP CG CD1 doub Y N 361 TRP CG CD2 sing Y N 362 TRP CD1 NE1 sing Y N 363 TRP CD1 HD1 sing N N 364 TRP CD2 CE2 doub Y N 365 TRP CD2 CE3 sing Y N 366 TRP NE1 CE2 sing Y N 367 TRP NE1 HE1 sing N N 368 TRP CE2 CZ2 sing Y N 369 TRP CE3 CZ3 doub Y N 370 TRP CE3 HE3 sing N N 371 TRP CZ2 CH2 doub Y N 372 TRP CZ2 HZ2 sing N N 373 TRP CZ3 CH2 sing Y N 374 TRP CZ3 HZ3 sing N N 375 TRP CH2 HH2 sing N N 376 TRP OXT HXT sing N N 377 TYR N CA sing N N 378 TYR N H sing N N 379 TYR N H2 sing N N 380 TYR CA C sing N N 381 TYR CA CB sing N N 382 TYR CA HA sing N N 383 TYR C O doub N N 384 TYR C OXT sing N N 385 TYR CB CG sing N N 386 TYR CB HB2 sing N N 387 TYR CB HB3 sing N N 388 TYR CG CD1 doub Y N 389 TYR CG CD2 sing Y N 390 TYR CD1 CE1 sing Y N 391 TYR CD1 HD1 sing N N 392 TYR CD2 CE2 doub Y N 393 TYR CD2 HD2 sing N N 394 TYR CE1 CZ doub Y N 395 TYR CE1 HE1 sing N N 396 TYR CE2 CZ sing Y N 397 TYR CE2 HE2 sing N N 398 TYR CZ OH sing N N 399 TYR OH HH sing N N 400 TYR OXT HXT sing N N 401 VAL N CA sing N N 402 VAL N H sing N N 403 VAL N H2 sing N N 404 VAL CA C sing N N 405 VAL CA CB sing N N 406 VAL CA HA sing N N 407 VAL C O doub N N 408 VAL C OXT sing N N 409 VAL CB CG1 sing N N 410 VAL CB CG2 sing N N 411 VAL CB HB sing N N 412 VAL CG1 HG11 sing N N 413 VAL CG1 HG12 sing N N 414 VAL CG1 HG13 sing N N 415 VAL CG2 HG21 sing N N 416 VAL CG2 HG22 sing N N 417 VAL CG2 HG23 sing N N 418 VAL OXT HXT sing N N 419 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal MEXT Japan JP17H01818 1 AMED Japan 17am0101069j0001 2 MEXT Japan '#25107703' 3 MEXT Japan '#23107505' 4 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 GLC 1 C GLC 1 D GLC 1 n C 3 GLC 2 C GLC 2 D GLC 2 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGlcpa1-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a1-b1' WURCS PDB2Glycan 1.1.0 3 3 '[][a-D-Glcp]{[(1+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 GLC 1 n 3 GLC 2 n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GLC _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GLC _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 alpha-D-glucopyranose GLC 5 'SULFATE ION' SO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5YRK _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #