data_5YSI # _entry.id 5YSI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.296 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5YSI WWPDB D_1300005830 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YSI _pdbx_database_status.recvd_initial_deposition_date 2017-11-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kim, L.' 1 ? 'Kwon, D.H.' 2 ? 'Song, H.K.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Mol. Biol.' _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 430 _citation.language ? _citation.page_first 2843 _citation.page_last 2856 _citation.title ;Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila ; _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2018.05.043 _citation.pdbx_database_id_PubMed 29870726 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, L.' 1 ? primary 'Kwon, D.H.' 2 ? primary 'Kim, B.H.' 3 ? primary 'Kim, J.' 4 ? primary 'Park, M.R.' 5 ? primary 'Park, Z.Y.' 6 ? primary 'Song, H.K.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YSI _cell.details ? _cell.formula_units_Z ? _cell.length_a 37.867 _cell.length_a_esd ? _cell.length_b 75.698 _cell.length_b_esd ? _cell.length_c 84.682 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitinating/deubiquitinating enzyme SdeA' 16923.611 1 3.4.22.-,2.3.2.-,2.4.2.31 'E860A, E862A' 'UNP residues 761-960' ? 2 non-polymer syn NICOTINAMIDE 122.125 1 ? ? ? ? 3 water nat water 18.015 32 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Effector protein SdeA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSQAKPPTRLFRGLNLSEEFTKGLIDQANA(MSE)IANTTERLFTDHSPEAFKQIKLNDLSK(MSE)SGRTNASTTTEI KLVKETWDSNVIFE(MSE)LDPDGLLHSKQVGRHGEGTASAFSVYLPEDVALVPVKVTLDGKTQKGENRYVFTFVAVKSP DFTP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSQAKPPTRLFRGLNLSEEFTKGLIDQANAMIANTTERLFTDHSPEAFKQIKLNDLSKMSGRTNASTTTEIKLVKETWD SNVIFEMLDPDGLLHSKQVGRHGEGTASAFSVYLPEDVALVPVKVTLDGKTQKGENRYVFTFVAVKSPDFTP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLN n 1 5 ALA n 1 6 LYS n 1 7 PRO n 1 8 PRO n 1 9 THR n 1 10 ARG n 1 11 LEU n 1 12 PHE n 1 13 ARG n 1 14 GLY n 1 15 LEU n 1 16 ASN n 1 17 LEU n 1 18 SER n 1 19 GLU n 1 20 GLU n 1 21 PHE n 1 22 THR n 1 23 LYS n 1 24 GLY n 1 25 LEU n 1 26 ILE n 1 27 ASP n 1 28 GLN n 1 29 ALA n 1 30 ASN n 1 31 ALA n 1 32 MSE n 1 33 ILE n 1 34 ALA n 1 35 ASN n 1 36 THR n 1 37 THR n 1 38 GLU n 1 39 ARG n 1 40 LEU n 1 41 PHE n 1 42 THR n 1 43 ASP n 1 44 HIS n 1 45 SER n 1 46 PRO n 1 47 GLU n 1 48 ALA n 1 49 PHE n 1 50 LYS n 1 51 GLN n 1 52 ILE n 1 53 LYS n 1 54 LEU n 1 55 ASN n 1 56 ASP n 1 57 LEU n 1 58 SER n 1 59 LYS n 1 60 MSE n 1 61 SER n 1 62 GLY n 1 63 ARG n 1 64 THR n 1 65 ASN n 1 66 ALA n 1 67 SER n 1 68 THR n 1 69 THR n 1 70 THR n 1 71 GLU n 1 72 ILE n 1 73 LYS n 1 74 LEU n 1 75 VAL n 1 76 LYS n 1 77 GLU n 1 78 THR n 1 79 TRP n 1 80 ASP n 1 81 SER n 1 82 ASN n 1 83 VAL n 1 84 ILE n 1 85 PHE n 1 86 GLU n 1 87 MSE n 1 88 LEU n 1 89 ASP n 1 90 PRO n 1 91 ASP n 1 92 GLY n 1 93 LEU n 1 94 LEU n 1 95 HIS n 1 96 SER n 1 97 LYS n 1 98 GLN n 1 99 VAL n 1 100 GLY n 1 101 ARG n 1 102 HIS n 1 103 GLY n 1 104 GLU n 1 105 GLY n 1 106 THR n 1 107 ALA n 1 108 SER n 1 109 ALA n 1 110 PHE n 1 111 SER n 1 112 VAL n 1 113 TYR n 1 114 LEU n 1 115 PRO n 1 116 GLU n 1 117 ASP n 1 118 VAL n 1 119 ALA n 1 120 LEU n 1 121 VAL n 1 122 PRO n 1 123 VAL n 1 124 LYS n 1 125 VAL n 1 126 THR n 1 127 LEU n 1 128 ASP n 1 129 GLY n 1 130 LYS n 1 131 THR n 1 132 GLN n 1 133 LYS n 1 134 GLY n 1 135 GLU n 1 136 ASN n 1 137 ARG n 1 138 TYR n 1 139 VAL n 1 140 PHE n 1 141 THR n 1 142 PHE n 1 143 VAL n 1 144 ALA n 1 145 VAL n 1 146 LYS n 1 147 SER n 1 148 PRO n 1 149 ASP n 1 150 PHE n 1 151 THR n 1 152 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 152 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene sdeA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Philadelphia 1' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Legionella pneumophila subsp. pneumophila str. Philadelphia 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272624 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6RCR0_LEGPN _struct_ref.pdbx_db_accession Q6RCR0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SQAKPPTRLFRGLNLSEEFTKGLIDQANAMIANTTERLFTDHSPEAFKQIKLNDLSKMSGRTNASTTTEIKLVKETWDSN VIFEMLDPDGLLHSKQVGRHGEGTESEFSVYLPEDVALVPVKVTLDGKTQKGENRYVFTFVAVKSPDFTP ; _struct_ref.pdbx_align_begin 761 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5YSI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6RCR0 _struct_ref_seq.db_align_beg 761 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 910 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 756 _struct_ref_seq.pdbx_auth_seq_align_end 905 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YSI GLY A 1 ? UNP Q6RCR0 ? ? 'expression tag' 754 1 1 5YSI SER A 2 ? UNP Q6RCR0 ? ? 'expression tag' 755 2 1 5YSI ALA A 107 ? UNP Q6RCR0 GLU 865 'engineered mutation' 860 3 1 5YSI ALA A 109 ? UNP Q6RCR0 GLU 867 'engineered mutation' 862 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NCA non-polymer . NICOTINAMIDE ? 'C6 H6 N2 O' 122.125 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YSI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.78 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 30.93 _exptl_crystal.description 'THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS.' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG400, Tris' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 193 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YSI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.546 _reflns.d_resolution_low 34.555 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 36284 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.56 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 32.37 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.546 _reflns_shell.d_res_low 1.602 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1754 _reflns_shell.percent_possible_all 97.33 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.542 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YSI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.546 _refine.ls_d_res_low 34.555 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 34139 _refine.ls_number_reflns_R_free 3400 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.21 _refine.ls_percent_reflns_R_free 9.96 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2080 _refine.ls_R_factor_R_free 0.2458 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2038 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.65 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.20 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1141 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1182 _refine_hist.d_res_high 1.546 _refine_hist.d_res_low 34.555 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 ? 1172 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.091 ? 1584 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.995 ? 707 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.059 ? 181 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 205 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5462 1.5683 . . 137 1227 93.00 . . . 0.3283 . 0.2634 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5683 1.5917 . . 136 1240 99.00 . . . 0.3011 . 0.2612 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5917 1.6166 . . 149 1317 100.00 . . . 0.2746 . 0.2614 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6166 1.6431 . . 141 1308 99.00 . . . 0.3199 . 0.2501 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6431 1.6714 . . 137 1241 100.00 . . . 0.3404 . 0.2663 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6714 1.7018 . . 145 1320 100.00 . . . 0.2563 . 0.2439 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7018 1.7346 . . 136 1251 100.00 . . . 0.2553 . 0.2270 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7346 1.7700 . . 146 1298 100.00 . . . 0.2597 . 0.2196 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7700 1.8085 . . 144 1281 100.00 . . . 0.2846 . 0.2155 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8085 1.8505 . . 143 1303 100.00 . . . 0.2407 . 0.2059 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8505 1.8968 . . 139 1299 100.00 . . . 0.2659 . 0.1978 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8968 1.9481 . . 137 1263 100.00 . . . 0.2481 . 0.2065 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9481 2.0054 . . 146 1302 99.00 . . . 0.2774 . 0.2109 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0054 2.0701 . . 141 1276 100.00 . . . 0.2321 . 0.2119 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0701 2.1441 . . 142 1287 100.00 . . . 0.2440 . 0.2080 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1441 2.2299 . . 146 1304 99.00 . . . 0.3197 . 0.2065 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2299 2.3314 . . 140 1249 99.00 . . . 0.2491 . 0.2109 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3314 2.4543 . . 141 1273 100.00 . . . 0.2287 . 0.1947 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4543 2.6080 . . 141 1286 99.00 . . . 0.2818 . 0.1986 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6080 2.8093 . . 141 1294 100.00 . . . 0.2403 . 0.2111 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8093 3.0918 . . 136 1273 99.00 . . . 0.2211 . 0.2189 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0918 3.5388 . . 148 1285 99.00 . . . 0.2618 . 0.2052 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5388 4.4571 . . 143 1279 99.00 . . . 0.2232 . 0.1708 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.4571 34.5632 . . 145 1283 99.00 . . . 0.2066 . 0.1925 . . . . . . . . . . # _struct.entry_id 5YSI _struct.title 'SdeA mART-C domain EE/AA NCA complex' _struct.pdbx_descriptor SdeA _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YSI _struct_keywords.text 'SdeA, E3 ligase, Legionella, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 18 ? THR A 36 ? SER A 771 THR A 789 1 ? 19 HELX_P HELX_P2 AA2 THR A 36 ? HIS A 44 ? THR A 789 HIS A 797 1 ? 9 HELX_P HELX_P3 AA3 SER A 45 ? ASP A 56 ? SER A 798 ASP A 809 1 ? 12 HELX_P HELX_P4 AA4 GLU A 71 ? TRP A 79 ? GLU A 824 TRP A 832 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ALA 31 C ? ? ? 1_555 A MSE 32 N ? ? A ALA 784 A MSE 785 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale both ? A MSE 32 C ? ? ? 1_555 A ILE 33 N ? ? A MSE 785 A ILE 786 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale both ? A LYS 59 C ? ? ? 1_555 A MSE 60 N ? ? A LYS 812 A MSE 813 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale both ? A MSE 60 C ? ? ? 1_555 A SER 61 N ? ? A MSE 813 A SER 814 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale both ? A GLU 86 C ? ? ? 1_555 A MSE 87 N ? ? A GLU 839 A MSE 840 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale both ? A MSE 87 C ? ? ? 1_555 A LEU 88 N ? ? A MSE 840 A LEU 841 1_555 ? ? ? ? ? ? ? 1.333 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 10 ? LEU A 15 ? ARG A 763 LEU A 768 AA1 2 VAL A 83 ? LEU A 88 ? VAL A 836 LEU A 841 AA1 3 ASN A 136 ? LYS A 146 ? ASN A 889 LYS A 899 AA1 4 VAL A 118 ? LYS A 130 ? VAL A 871 LYS A 883 AA2 1 ALA A 66 ? THR A 68 ? ALA A 819 THR A 821 AA2 2 ALA A 109 ? TYR A 113 ? ALA A 862 TYR A 866 AA2 3 HIS A 95 ? VAL A 99 ? HIS A 848 VAL A 852 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 13 ? N ARG A 766 O PHE A 85 ? O PHE A 838 AA1 2 3 N GLU A 86 ? N GLU A 839 O PHE A 140 ? O PHE A 893 AA1 3 4 O THR A 141 ? O THR A 894 N VAL A 123 ? N VAL A 876 AA2 1 2 N ALA A 66 ? N ALA A 819 O VAL A 112 ? O VAL A 865 AA2 2 3 O SER A 111 ? O SER A 864 N LYS A 97 ? N LYS A 850 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NCA _struct_site.pdbx_auth_seq_id 1001 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'binding site for residue NCA A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 PHE A 12 ? PHE A 765 . ? 1_555 ? 2 AC1 8 ARG A 13 ? ARG A 766 . ? 1_555 ? 3 AC1 8 GLY A 14 ? GLY A 767 . ? 1_555 ? 4 AC1 8 SER A 67 ? SER A 820 . ? 1_555 ? 5 AC1 8 THR A 68 ? THR A 821 . ? 1_555 ? 6 AC1 8 THR A 69 ? THR A 822 . ? 1_555 ? 7 AC1 8 VAL A 75 ? VAL A 828 . ? 1_555 ? 8 AC1 8 TRP A 79 ? TRP A 832 . ? 1_555 ? # _atom_sites.entry_id 5YSI _atom_sites.fract_transf_matrix[1][1] 0.026408 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013210 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011809 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 754 ? ? ? A . n A 1 2 SER 2 755 ? ? ? A . n A 1 3 SER 3 756 ? ? ? A . n A 1 4 GLN 4 757 ? ? ? A . n A 1 5 ALA 5 758 758 ALA ALA A . n A 1 6 LYS 6 759 759 LYS LYS A . n A 1 7 PRO 7 760 760 PRO PRO A . n A 1 8 PRO 8 761 761 PRO PRO A . n A 1 9 THR 9 762 762 THR THR A . n A 1 10 ARG 10 763 763 ARG ARG A . n A 1 11 LEU 11 764 764 LEU LEU A . n A 1 12 PHE 12 765 765 PHE PHE A . n A 1 13 ARG 13 766 766 ARG ARG A . n A 1 14 GLY 14 767 767 GLY GLY A . n A 1 15 LEU 15 768 768 LEU LEU A . n A 1 16 ASN 16 769 769 ASN ASN A . n A 1 17 LEU 17 770 770 LEU LEU A . n A 1 18 SER 18 771 771 SER SER A . n A 1 19 GLU 19 772 772 GLU GLU A . n A 1 20 GLU 20 773 773 GLU GLU A . n A 1 21 PHE 21 774 774 PHE PHE A . n A 1 22 THR 22 775 775 THR THR A . n A 1 23 LYS 23 776 776 LYS LYS A . n A 1 24 GLY 24 777 777 GLY GLY A . n A 1 25 LEU 25 778 778 LEU LEU A . n A 1 26 ILE 26 779 779 ILE ILE A . n A 1 27 ASP 27 780 780 ASP ASP A . n A 1 28 GLN 28 781 781 GLN GLN A . n A 1 29 ALA 29 782 782 ALA ALA A . n A 1 30 ASN 30 783 783 ASN ASN A . n A 1 31 ALA 31 784 784 ALA ALA A . n A 1 32 MSE 32 785 785 MSE MSE A . n A 1 33 ILE 33 786 786 ILE ILE A . n A 1 34 ALA 34 787 787 ALA ALA A . n A 1 35 ASN 35 788 788 ASN ASN A . n A 1 36 THR 36 789 789 THR THR A . n A 1 37 THR 37 790 790 THR THR A . n A 1 38 GLU 38 791 791 GLU GLU A . n A 1 39 ARG 39 792 792 ARG ARG A . n A 1 40 LEU 40 793 793 LEU LEU A . n A 1 41 PHE 41 794 794 PHE PHE A . n A 1 42 THR 42 795 795 THR THR A . n A 1 43 ASP 43 796 796 ASP ASP A . n A 1 44 HIS 44 797 797 HIS HIS A . n A 1 45 SER 45 798 798 SER SER A . n A 1 46 PRO 46 799 799 PRO PRO A . n A 1 47 GLU 47 800 800 GLU GLU A . n A 1 48 ALA 48 801 801 ALA ALA A . n A 1 49 PHE 49 802 802 PHE PHE A . n A 1 50 LYS 50 803 803 LYS LYS A . n A 1 51 GLN 51 804 804 GLN GLN A . n A 1 52 ILE 52 805 805 ILE ILE A . n A 1 53 LYS 53 806 806 LYS LYS A . n A 1 54 LEU 54 807 807 LEU LEU A . n A 1 55 ASN 55 808 808 ASN ASN A . n A 1 56 ASP 56 809 809 ASP ASP A . n A 1 57 LEU 57 810 810 LEU LEU A . n A 1 58 SER 58 811 811 SER SER A . n A 1 59 LYS 59 812 812 LYS LYS A . n A 1 60 MSE 60 813 813 MSE MSE A . n A 1 61 SER 61 814 814 SER SER A . n A 1 62 GLY 62 815 815 GLY GLY A . n A 1 63 ARG 63 816 816 ARG ARG A . n A 1 64 THR 64 817 817 THR THR A . n A 1 65 ASN 65 818 818 ASN ASN A . n A 1 66 ALA 66 819 819 ALA ALA A . n A 1 67 SER 67 820 820 SER SER A . n A 1 68 THR 68 821 821 THR THR A . n A 1 69 THR 69 822 822 THR THR A . n A 1 70 THR 70 823 823 THR THR A . n A 1 71 GLU 71 824 824 GLU GLU A . n A 1 72 ILE 72 825 825 ILE ILE A . n A 1 73 LYS 73 826 826 LYS LYS A . n A 1 74 LEU 74 827 827 LEU LEU A . n A 1 75 VAL 75 828 828 VAL VAL A . n A 1 76 LYS 76 829 829 LYS LYS A . n A 1 77 GLU 77 830 830 GLU GLU A . n A 1 78 THR 78 831 831 THR THR A . n A 1 79 TRP 79 832 832 TRP TRP A . n A 1 80 ASP 80 833 833 ASP ASP A . n A 1 81 SER 81 834 834 SER SER A . n A 1 82 ASN 82 835 835 ASN ASN A . n A 1 83 VAL 83 836 836 VAL VAL A . n A 1 84 ILE 84 837 837 ILE ILE A . n A 1 85 PHE 85 838 838 PHE PHE A . n A 1 86 GLU 86 839 839 GLU GLU A . n A 1 87 MSE 87 840 840 MSE MSE A . n A 1 88 LEU 88 841 841 LEU LEU A . n A 1 89 ASP 89 842 842 ASP ASP A . n A 1 90 PRO 90 843 843 PRO PRO A . n A 1 91 ASP 91 844 844 ASP ASP A . n A 1 92 GLY 92 845 845 GLY GLY A . n A 1 93 LEU 93 846 846 LEU LEU A . n A 1 94 LEU 94 847 847 LEU LEU A . n A 1 95 HIS 95 848 848 HIS HIS A . n A 1 96 SER 96 849 849 SER SER A . n A 1 97 LYS 97 850 850 LYS LYS A . n A 1 98 GLN 98 851 851 GLN GLN A . n A 1 99 VAL 99 852 852 VAL VAL A . n A 1 100 GLY 100 853 853 GLY GLY A . n A 1 101 ARG 101 854 854 ARG ARG A . n A 1 102 HIS 102 855 855 HIS HIS A . n A 1 103 GLY 103 856 856 GLY GLY A . n A 1 104 GLU 104 857 857 GLU GLU A . n A 1 105 GLY 105 858 858 GLY GLY A . n A 1 106 THR 106 859 859 THR THR A . n A 1 107 ALA 107 860 860 ALA ALA A . n A 1 108 SER 108 861 861 SER SER A . n A 1 109 ALA 109 862 862 ALA ALA A . n A 1 110 PHE 110 863 863 PHE PHE A . n A 1 111 SER 111 864 864 SER SER A . n A 1 112 VAL 112 865 865 VAL VAL A . n A 1 113 TYR 113 866 866 TYR TYR A . n A 1 114 LEU 114 867 867 LEU LEU A . n A 1 115 PRO 115 868 868 PRO PRO A . n A 1 116 GLU 116 869 869 GLU GLU A . n A 1 117 ASP 117 870 870 ASP ASP A . n A 1 118 VAL 118 871 871 VAL VAL A . n A 1 119 ALA 119 872 872 ALA ALA A . n A 1 120 LEU 120 873 873 LEU LEU A . n A 1 121 VAL 121 874 874 VAL VAL A . n A 1 122 PRO 122 875 875 PRO PRO A . n A 1 123 VAL 123 876 876 VAL VAL A . n A 1 124 LYS 124 877 877 LYS LYS A . n A 1 125 VAL 125 878 878 VAL VAL A . n A 1 126 THR 126 879 879 THR THR A . n A 1 127 LEU 127 880 880 LEU LEU A . n A 1 128 ASP 128 881 881 ASP ASP A . n A 1 129 GLY 129 882 882 GLY GLY A . n A 1 130 LYS 130 883 883 LYS LYS A . n A 1 131 THR 131 884 884 THR THR A . n A 1 132 GLN 132 885 885 GLN GLN A . n A 1 133 LYS 133 886 886 LYS LYS A . n A 1 134 GLY 134 887 887 GLY GLY A . n A 1 135 GLU 135 888 888 GLU GLU A . n A 1 136 ASN 136 889 889 ASN ASN A . n A 1 137 ARG 137 890 890 ARG ARG A . n A 1 138 TYR 138 891 891 TYR TYR A . n A 1 139 VAL 139 892 892 VAL VAL A . n A 1 140 PHE 140 893 893 PHE PHE A . n A 1 141 THR 141 894 894 THR THR A . n A 1 142 PHE 142 895 895 PHE PHE A . n A 1 143 VAL 143 896 896 VAL VAL A . n A 1 144 ALA 144 897 897 ALA ALA A . n A 1 145 VAL 145 898 898 VAL VAL A . n A 1 146 LYS 146 899 899 LYS LYS A . n A 1 147 SER 147 900 900 SER SER A . n A 1 148 PRO 148 901 901 PRO PRO A . n A 1 149 ASP 149 902 902 ASP ASP A . n A 1 150 PHE 150 903 903 PHE PHE A . n A 1 151 THR 151 904 ? ? ? A . n A 1 152 PRO 152 905 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCA 1 1001 1 NCA NCA A . C 3 HOH 1 1101 36 HOH HOH A . C 3 HOH 2 1102 20 HOH HOH A . C 3 HOH 3 1103 7 HOH HOH A . C 3 HOH 4 1104 29 HOH HOH A . C 3 HOH 5 1105 14 HOH HOH A . C 3 HOH 6 1106 16 HOH HOH A . C 3 HOH 7 1107 27 HOH HOH A . C 3 HOH 8 1108 22 HOH HOH A . C 3 HOH 9 1109 15 HOH HOH A . C 3 HOH 10 1110 12 HOH HOH A . C 3 HOH 11 1111 2 HOH HOH A . C 3 HOH 12 1112 13 HOH HOH A . C 3 HOH 13 1113 9 HOH HOH A . C 3 HOH 14 1114 1 HOH HOH A . C 3 HOH 15 1115 4 HOH HOH A . C 3 HOH 16 1116 11 HOH HOH A . C 3 HOH 17 1117 8 HOH HOH A . C 3 HOH 18 1118 5 HOH HOH A . C 3 HOH 19 1119 3 HOH HOH A . C 3 HOH 20 1120 18 HOH HOH A . C 3 HOH 21 1121 10 HOH HOH A . C 3 HOH 22 1122 6 HOH HOH A . C 3 HOH 23 1123 26 HOH HOH A . C 3 HOH 24 1124 23 HOH HOH A . C 3 HOH 25 1125 21 HOH HOH A . C 3 HOH 26 1126 19 HOH HOH A . C 3 HOH 27 1127 17 HOH HOH A . C 3 HOH 28 1128 35 HOH HOH A . C 3 HOH 29 1129 39 HOH HOH A . C 3 HOH 30 1130 38 HOH HOH A . C 3 HOH 31 1131 28 HOH HOH A . C 3 HOH 32 1132 81 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 32 A MSE 785 ? MET 'modified residue' 2 A MSE 60 A MSE 813 ? MET 'modified residue' 3 A MSE 87 A MSE 840 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 340 ? 1 MORE 5 ? 1 'SSA (A^2)' 8110 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2018-08-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 839 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 1101 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 844 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OD1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ASP _pdbx_validate_symm_contact.auth_seq_id_2 844 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 789 ? ? -134.89 -44.72 2 1 ASN A 818 ? ? -147.48 46.58 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 754 ? A GLY 1 2 1 Y 1 A SER 755 ? A SER 2 3 1 Y 1 A SER 756 ? A SER 3 4 1 Y 1 A GLN 757 ? A GLN 4 5 1 Y 1 A THR 904 ? A THR 151 6 1 Y 1 A PRO 905 ? A PRO 152 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NICOTINAMIDE NCA 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #