data_5YVA # _entry.id 5YVA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.325 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5YVA WWPDB D_1300005938 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YVA _pdbx_database_status.recvd_initial_deposition_date 2017-11-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Niwa, H.' 1 ? 'Handa, N.' 2 ? 'Yokoyama, S.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Graph.Model. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1093-3263 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 99 _citation.language ? _citation.page_first 107599 _citation.page_last 107599 _citation.title ;Protein ligand interaction analysis against new CaMKK2 inhibitors by use of X-ray crystallography and the fragment molecular orbital (FMO) method. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmgm.2020.107599 _citation.pdbx_database_id_PubMed 32348940 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Takaya, D.' 1 ? primary 'Niwa, H.' 2 ? primary 'Mikuni, J.' 3 ? primary 'Nakamura, K.' 4 ? primary 'Handa, N.' 5 ? primary 'Tanaka, A.' 6 ? primary 'Yokoyama, S.' 7 ? primary 'Honma, T.' 8 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YVA _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.091 _cell.length_a_esd ? _cell.length_b 77.117 _cell.length_b_esd ? _cell.length_c 84.423 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Calcium/calmodulin-dependent protein kinase kinase 2' 33711.637 1 2.7.11.17 ? ? ? 2 non-polymer syn '3-(1H-tetrazol-5-yl)-10lambda~6~-thioxanthene-9,10,10-trione' 312.303 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 42 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CaMKK 2,Calcium/calmodulin-dependent protein kinase kinase beta,CaMKK beta' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPI EQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIH RDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPF MDERIM(CAS)LHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVTR ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPI EQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIH RDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPF MDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVTR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASP n 1 9 CYS n 1 10 VAL n 1 11 GLN n 1 12 LEU n 1 13 ASN n 1 14 GLN n 1 15 TYR n 1 16 THR n 1 17 LEU n 1 18 LYS n 1 19 ASP n 1 20 GLU n 1 21 ILE n 1 22 GLY n 1 23 LYS n 1 24 GLY n 1 25 SER n 1 26 TYR n 1 27 GLY n 1 28 VAL n 1 29 VAL n 1 30 LYS n 1 31 LEU n 1 32 ALA n 1 33 TYR n 1 34 ASN n 1 35 GLU n 1 36 ASN n 1 37 ASP n 1 38 ASN n 1 39 THR n 1 40 TYR n 1 41 TYR n 1 42 ALA n 1 43 MET n 1 44 LYS n 1 45 VAL n 1 46 LEU n 1 47 SER n 1 48 LYS n 1 49 LYS n 1 50 LYS n 1 51 LEU n 1 52 ILE n 1 53 ARG n 1 54 GLN n 1 55 ALA n 1 56 GLY n 1 57 PHE n 1 58 PRO n 1 59 ARG n 1 60 ARG n 1 61 PRO n 1 62 PRO n 1 63 PRO n 1 64 ARG n 1 65 GLY n 1 66 THR n 1 67 ARG n 1 68 PRO n 1 69 ALA n 1 70 PRO n 1 71 GLY n 1 72 GLY n 1 73 CYS n 1 74 ILE n 1 75 GLN n 1 76 PRO n 1 77 ARG n 1 78 GLY n 1 79 PRO n 1 80 ILE n 1 81 GLU n 1 82 GLN n 1 83 VAL n 1 84 TYR n 1 85 GLN n 1 86 GLU n 1 87 ILE n 1 88 ALA n 1 89 ILE n 1 90 LEU n 1 91 LYS n 1 92 LYS n 1 93 LEU n 1 94 ASP n 1 95 HIS n 1 96 PRO n 1 97 ASN n 1 98 VAL n 1 99 VAL n 1 100 LYS n 1 101 LEU n 1 102 VAL n 1 103 GLU n 1 104 VAL n 1 105 LEU n 1 106 ASP n 1 107 ASP n 1 108 PRO n 1 109 ASN n 1 110 GLU n 1 111 ASP n 1 112 HIS n 1 113 LEU n 1 114 TYR n 1 115 MET n 1 116 VAL n 1 117 PHE n 1 118 GLU n 1 119 LEU n 1 120 VAL n 1 121 ASN n 1 122 GLN n 1 123 GLY n 1 124 PRO n 1 125 VAL n 1 126 MET n 1 127 GLU n 1 128 VAL n 1 129 PRO n 1 130 THR n 1 131 LEU n 1 132 LYS n 1 133 PRO n 1 134 LEU n 1 135 SER n 1 136 GLU n 1 137 ASP n 1 138 GLN n 1 139 ALA n 1 140 ARG n 1 141 PHE n 1 142 TYR n 1 143 PHE n 1 144 GLN n 1 145 ASP n 1 146 LEU n 1 147 ILE n 1 148 LYS n 1 149 GLY n 1 150 ILE n 1 151 GLU n 1 152 TYR n 1 153 LEU n 1 154 HIS n 1 155 TYR n 1 156 GLN n 1 157 LYS n 1 158 ILE n 1 159 ILE n 1 160 HIS n 1 161 ARG n 1 162 ASP n 1 163 ILE n 1 164 LYS n 1 165 PRO n 1 166 SER n 1 167 ASN n 1 168 LEU n 1 169 LEU n 1 170 VAL n 1 171 GLY n 1 172 GLU n 1 173 ASP n 1 174 GLY n 1 175 HIS n 1 176 ILE n 1 177 LYS n 1 178 ILE n 1 179 ALA n 1 180 ASP n 1 181 PHE n 1 182 GLY n 1 183 VAL n 1 184 SER n 1 185 ASN n 1 186 GLU n 1 187 PHE n 1 188 LYS n 1 189 GLY n 1 190 SER n 1 191 ASP n 1 192 ALA n 1 193 LEU n 1 194 LEU n 1 195 SER n 1 196 ASN n 1 197 THR n 1 198 VAL n 1 199 GLY n 1 200 THR n 1 201 PRO n 1 202 ALA n 1 203 PHE n 1 204 MET n 1 205 ALA n 1 206 PRO n 1 207 GLU n 1 208 SER n 1 209 LEU n 1 210 SER n 1 211 GLU n 1 212 THR n 1 213 ARG n 1 214 LYS n 1 215 ILE n 1 216 PHE n 1 217 SER n 1 218 GLY n 1 219 LYS n 1 220 ALA n 1 221 LEU n 1 222 ASP n 1 223 VAL n 1 224 TRP n 1 225 ALA n 1 226 MET n 1 227 GLY n 1 228 VAL n 1 229 THR n 1 230 LEU n 1 231 TYR n 1 232 CYS n 1 233 PHE n 1 234 VAL n 1 235 PHE n 1 236 GLY n 1 237 GLN n 1 238 CYS n 1 239 PRO n 1 240 PHE n 1 241 MET n 1 242 ASP n 1 243 GLU n 1 244 ARG n 1 245 ILE n 1 246 MET n 1 247 CAS n 1 248 LEU n 1 249 HIS n 1 250 SER n 1 251 LYS n 1 252 ILE n 1 253 LYS n 1 254 SER n 1 255 GLN n 1 256 ALA n 1 257 LEU n 1 258 GLU n 1 259 PHE n 1 260 PRO n 1 261 ASP n 1 262 GLN n 1 263 PRO n 1 264 ASP n 1 265 ILE n 1 266 ALA n 1 267 GLU n 1 268 ASP n 1 269 LEU n 1 270 LYS n 1 271 ASP n 1 272 LEU n 1 273 ILE n 1 274 THR n 1 275 ARG n 1 276 MET n 1 277 LEU n 1 278 ASP n 1 279 LYS n 1 280 ASN n 1 281 PRO n 1 282 GLU n 1 283 SER n 1 284 ARG n 1 285 ILE n 1 286 VAL n 1 287 VAL n 1 288 PRO n 1 289 GLU n 1 290 ILE n 1 291 LYS n 1 292 LEU n 1 293 HIS n 1 294 PRO n 1 295 TRP n 1 296 VAL n 1 297 THR n 1 298 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 298 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CAMKK2, CAMKKB, KIAA0787' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'CELL-FREE SYNTHESIS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32644 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PX070406-05 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KKCC2_HUMAN _struct_ref.pdbx_db_accession Q96RR4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEI AILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSN LLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMC LHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVTR ; _struct_ref.pdbx_align_begin 158 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5YVA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 298 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96RR4 _struct_ref_seq.db_align_beg 158 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 448 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 158 _struct_ref_seq.pdbx_auth_seq_align_end 448 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YVA GLY A 1 ? UNP Q96RR4 ? ? 'expression tag' 151 1 1 5YVA SER A 2 ? UNP Q96RR4 ? ? 'expression tag' 152 2 1 5YVA SER A 3 ? UNP Q96RR4 ? ? 'expression tag' 153 3 1 5YVA GLY A 4 ? UNP Q96RR4 ? ? 'expression tag' 154 4 1 5YVA SER A 5 ? UNP Q96RR4 ? ? 'expression tag' 155 5 1 5YVA SER A 6 ? UNP Q96RR4 ? ? 'expression tag' 156 6 1 5YVA GLY A 7 ? UNP Q96RR4 ? ? 'expression tag' 157 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 91X non-polymer . '3-(1H-tetrazol-5-yl)-10lambda~6~-thioxanthene-9,10,10-trione' ? 'C14 H8 N4 O3 S' 312.303 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CAS 'L-peptide linking' n 'S-(DIMETHYLARSENIC)CYSTEINE' ? 'C5 H12 As N O2 S' 225.141 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YVA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 66.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M sodium cocodylate pH 6.5, 0.2M sodium acetate, 20% PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-09-16 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9537 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9537 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MX2 _diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YVA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.57 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14418 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.130 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.140 _reflns.pdbx_Rpim_I_all 0.052 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.57 _reflns_shell.d_res_low 2.61 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 698 _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.pdbx_Rsym_value 1.750 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.882 _reflns_shell.pdbx_Rpim_I_all 0.689 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.616 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YVA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.574 _refine.ls_d_res_low 38.558 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14418 _refine.ls_number_reflns_R_free 723 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.75 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1633 _refine.ls_R_factor_R_free 0.2204 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1605 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.09 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.47 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.35 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2094 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 2177 _refine_hist.d_res_high 2.574 _refine_hist.d_res_low 38.558 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 2180 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.965 ? 2949 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 13.588 ? 1315 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.056 ? 324 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 373 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.5742 2.6662 . . 132 2495 98.00 . . . 0.3585 . 0.2727 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6662 2.7729 . . 137 2535 100.00 . . . 0.2880 . 0.2470 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7729 2.8990 . . 115 2569 100.00 . . . 0.3995 . 0.2350 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8990 3.0518 . . 159 2505 100.00 . . . 0.2844 . 0.2202 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0518 3.2429 . . 138 2557 100.00 . . . 0.2752 . 0.2033 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2429 3.4932 . . 137 2540 100.00 . . . 0.2681 . 0.1800 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4932 3.8444 . . 131 2560 100.00 . . . 0.2455 . 0.1438 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8444 4.4000 . . 143 2543 100.00 . . . 0.1690 . 0.1273 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.4000 5.5410 . . 115 2564 100.00 . . . 0.1559 . 0.1233 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.5410 38.5628 . . 135 2533 100.00 . . . 0.1631 . 0.1376 . . . . . . . . . . # _struct.entry_id 5YVA _struct.title 'Structure of CaMKK2 in complex with CKI-010' _struct.pdbx_descriptor 'Calcium/calmodulin-dependent protein kinase kinase 2 (E.C.2.7.11.17)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YVA _struct_keywords.text 'ATP-BINDING, KINASE, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, PROTEIN-INHIBITOR COMPLEX' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 80 ? LEU A 93 ? ILE A 230 LEU A 243 1 ? 14 HELX_P HELX_P2 AA2 SER A 135 ? GLN A 156 ? SER A 285 GLN A 306 1 ? 22 HELX_P HELX_P3 AA3 LYS A 164 ? SER A 166 ? LYS A 314 SER A 316 5 ? 3 HELX_P HELX_P4 AA4 THR A 200 ? MET A 204 ? THR A 350 MET A 354 5 ? 5 HELX_P HELX_P5 AA5 ALA A 205 ? SER A 210 ? ALA A 355 SER A 360 5 ? 6 HELX_P HELX_P6 AA6 GLY A 218 ? GLY A 236 ? GLY A 368 GLY A 386 1 ? 19 HELX_P HELX_P7 AA7 ARG A 244 ? GLN A 255 ? ARG A 394 GLN A 405 1 ? 12 HELX_P HELX_P8 AA8 ALA A 266 ? LEU A 277 ? ALA A 416 LEU A 427 1 ? 12 HELX_P HELX_P9 AA9 VAL A 286 ? LYS A 291 ? VAL A 436 LYS A 441 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A MET 246 C ? ? ? 1_555 A CAS 247 N ? ? A MET 396 A CAS 397 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale both ? A CAS 247 C ? ? ? 1_555 A LEU 248 N ? ? A CAS 397 A LEU 398 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 VAL 128 A . ? VAL 278 A PRO 129 A ? PRO 279 A 1 1.05 2 GLN 262 A . ? GLN 412 A PRO 263 A ? PRO 413 A 1 -5.96 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 11 ? LEU A 12 ? GLN A 161 LEU A 162 AA1 2 TYR A 15 ? GLY A 22 ? TYR A 165 GLY A 172 AA1 3 VAL A 28 ? ASN A 34 ? VAL A 178 ASN A 184 AA1 4 THR A 39 ? SER A 47 ? THR A 189 SER A 197 AA1 5 HIS A 112 ? GLU A 118 ? HIS A 262 GLU A 268 AA1 6 LEU A 101 ? ASP A 106 ? LEU A 251 ASP A 256 AA2 1 GLY A 123 ? PRO A 124 ? GLY A 273 PRO A 274 AA2 2 LEU A 168 ? VAL A 170 ? LEU A 318 VAL A 320 AA2 3 ILE A 176 ? ILE A 178 ? ILE A 326 ILE A 328 AA3 1 ILE A 158 ? ILE A 159 ? ILE A 308 ILE A 309 AA3 2 ASN A 185 ? GLU A 186 ? ASN A 335 GLU A 336 AA4 1 LEU A 193 ? LEU A 194 ? LEU A 343 LEU A 344 AA4 2 PHE A 216 ? SER A 217 ? PHE A 366 SER A 367 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 12 ? N LEU A 162 O TYR A 15 ? O TYR A 165 AA1 2 3 N LYS A 18 ? N LYS A 168 O LEU A 31 ? O LEU A 181 AA1 3 4 N ALA A 32 ? N ALA A 182 O TYR A 41 ? O TYR A 191 AA1 4 5 N ALA A 42 ? N ALA A 192 O PHE A 117 ? O PHE A 267 AA1 5 6 O VAL A 116 ? O VAL A 266 N VAL A 102 ? N VAL A 252 AA2 1 2 N GLY A 123 ? N GLY A 273 O VAL A 170 ? O VAL A 320 AA2 2 3 N LEU A 169 ? N LEU A 319 O LYS A 177 ? O LYS A 327 AA3 1 2 N ILE A 159 ? N ILE A 309 O ASN A 185 ? O ASN A 335 AA4 1 2 N LEU A 194 ? N LEU A 344 O PHE A 216 ? O PHE A 366 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 91X 501 ? 11 'binding site for residue 91X A 501' AC2 Software A GOL 502 ? 1 'binding site for residue GOL A 502' AC3 Software A GOL 503 ? 5 'binding site for residue GOL A 503' AC4 Software A GOL 504 ? 6 'binding site for residue GOL A 504' AC5 Software A CL 505 ? 1 'binding site for residue CL A 505' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 ILE A 21 ? ILE A 171 . ? 1_555 ? 2 AC1 11 GLY A 22 ? GLY A 172 . ? 1_555 ? 3 AC1 11 VAL A 29 ? VAL A 179 . ? 1_555 ? 4 AC1 11 ALA A 42 ? ALA A 192 . ? 1_555 ? 5 AC1 11 LYS A 44 ? LYS A 194 . ? 1_555 ? 6 AC1 11 PHE A 117 ? PHE A 267 . ? 1_555 ? 7 AC1 11 LEU A 119 ? LEU A 269 . ? 1_555 ? 8 AC1 11 VAL A 120 ? VAL A 270 . ? 1_555 ? 9 AC1 11 LEU A 169 ? LEU A 319 . ? 1_555 ? 10 AC1 11 ASP A 180 ? ASP A 330 . ? 1_555 ? 11 AC1 11 HOH G . ? HOH A 606 . ? 1_555 ? 12 AC2 1 GLN A 138 ? GLN A 288 . ? 1_555 ? 13 AC3 5 ASN A 121 ? ASN A 271 . ? 3_545 ? 14 AC3 5 GLN A 122 ? GLN A 272 . ? 3_545 ? 15 AC3 5 LYS A 188 ? LYS A 338 . ? 1_555 ? 16 AC3 5 ASP A 191 ? ASP A 341 . ? 1_555 ? 17 AC3 5 LEU A 193 ? LEU A 343 . ? 1_555 ? 18 AC4 6 ARG A 244 ? ARG A 394 . ? 4_545 ? 19 AC4 6 GLU A 282 ? GLU A 432 . ? 1_555 ? 20 AC4 6 SER A 283 ? SER A 433 . ? 1_555 ? 21 AC4 6 ARG A 284 ? ARG A 434 . ? 1_555 ? 22 AC4 6 GLU A 289 ? GLU A 439 . ? 1_555 ? 23 AC4 6 HOH G . ? HOH A 630 . ? 1_555 ? 24 AC5 1 SER A 166 ? SER A 316 . ? 1_555 ? # _atom_sites.entry_id 5YVA _atom_sites.fract_transf_matrix[1][1] 0.014905 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012967 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011845 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AS C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 151 ? ? ? A . n A 1 2 SER 2 152 ? ? ? A . n A 1 3 SER 3 153 ? ? ? A . n A 1 4 GLY 4 154 ? ? ? A . n A 1 5 SER 5 155 ? ? ? A . n A 1 6 SER 6 156 ? ? ? A . n A 1 7 GLY 7 157 ? ? ? A . n A 1 8 ASP 8 158 ? ? ? A . n A 1 9 CYS 9 159 ? ? ? A . n A 1 10 VAL 10 160 160 VAL VAL A . n A 1 11 GLN 11 161 161 GLN GLN A . n A 1 12 LEU 12 162 162 LEU LEU A . n A 1 13 ASN 13 163 163 ASN ASN A . n A 1 14 GLN 14 164 164 GLN GLN A . n A 1 15 TYR 15 165 165 TYR TYR A . n A 1 16 THR 16 166 166 THR THR A . n A 1 17 LEU 17 167 167 LEU LEU A . n A 1 18 LYS 18 168 168 LYS LYS A . n A 1 19 ASP 19 169 169 ASP ASP A . n A 1 20 GLU 20 170 170 GLU GLU A . n A 1 21 ILE 21 171 171 ILE ILE A . n A 1 22 GLY 22 172 172 GLY GLY A . n A 1 23 LYS 23 173 173 LYS LYS A . n A 1 24 GLY 24 174 174 GLY GLY A . n A 1 25 SER 25 175 175 SER SER A . n A 1 26 TYR 26 176 176 TYR TYR A . n A 1 27 GLY 27 177 177 GLY GLY A . n A 1 28 VAL 28 178 178 VAL VAL A . n A 1 29 VAL 29 179 179 VAL VAL A . n A 1 30 LYS 30 180 180 LYS LYS A . n A 1 31 LEU 31 181 181 LEU LEU A . n A 1 32 ALA 32 182 182 ALA ALA A . n A 1 33 TYR 33 183 183 TYR TYR A . n A 1 34 ASN 34 184 184 ASN ASN A . n A 1 35 GLU 35 185 185 GLU GLU A . n A 1 36 ASN 36 186 186 ASN ASN A . n A 1 37 ASP 37 187 187 ASP ASP A . n A 1 38 ASN 38 188 188 ASN ASN A . n A 1 39 THR 39 189 189 THR THR A . n A 1 40 TYR 40 190 190 TYR TYR A . n A 1 41 TYR 41 191 191 TYR TYR A . n A 1 42 ALA 42 192 192 ALA ALA A . n A 1 43 MET 43 193 193 MET MET A . n A 1 44 LYS 44 194 194 LYS LYS A . n A 1 45 VAL 45 195 195 VAL VAL A . n A 1 46 LEU 46 196 196 LEU LEU A . n A 1 47 SER 47 197 197 SER SER A . n A 1 48 LYS 48 198 198 LYS LYS A . n A 1 49 LYS 49 199 199 LYS LYS A . n A 1 50 LYS 50 200 ? ? ? A . n A 1 51 LEU 51 201 ? ? ? A . n A 1 52 ILE 52 202 ? ? ? A . n A 1 53 ARG 53 203 ? ? ? A . n A 1 54 GLN 54 204 ? ? ? A . n A 1 55 ALA 55 205 ? ? ? A . n A 1 56 GLY 56 206 ? ? ? A . n A 1 57 PHE 57 207 ? ? ? A . n A 1 58 PRO 58 208 ? ? ? A . n A 1 59 ARG 59 209 ? ? ? A . n A 1 60 ARG 60 210 ? ? ? A . n A 1 61 PRO 61 211 ? ? ? A . n A 1 62 PRO 62 212 ? ? ? A . n A 1 63 PRO 63 213 ? ? ? A . n A 1 64 ARG 64 214 ? ? ? A . n A 1 65 GLY 65 215 ? ? ? A . n A 1 66 THR 66 216 ? ? ? A . n A 1 67 ARG 67 217 ? ? ? A . n A 1 68 PRO 68 218 ? ? ? A . n A 1 69 ALA 69 219 ? ? ? A . n A 1 70 PRO 70 220 ? ? ? A . n A 1 71 GLY 71 221 ? ? ? A . n A 1 72 GLY 72 222 ? ? ? A . n A 1 73 CYS 73 223 ? ? ? A . n A 1 74 ILE 74 224 ? ? ? A . n A 1 75 GLN 75 225 ? ? ? A . n A 1 76 PRO 76 226 ? ? ? A . n A 1 77 ARG 77 227 ? ? ? A . n A 1 78 GLY 78 228 ? ? ? A . n A 1 79 PRO 79 229 229 PRO PRO A . n A 1 80 ILE 80 230 230 ILE ILE A . n A 1 81 GLU 81 231 231 GLU GLU A . n A 1 82 GLN 82 232 232 GLN GLN A . n A 1 83 VAL 83 233 233 VAL VAL A . n A 1 84 TYR 84 234 234 TYR TYR A . n A 1 85 GLN 85 235 235 GLN GLN A . n A 1 86 GLU 86 236 236 GLU GLU A . n A 1 87 ILE 87 237 237 ILE ILE A . n A 1 88 ALA 88 238 238 ALA ALA A . n A 1 89 ILE 89 239 239 ILE ILE A . n A 1 90 LEU 90 240 240 LEU LEU A . n A 1 91 LYS 91 241 241 LYS LYS A . n A 1 92 LYS 92 242 242 LYS LYS A . n A 1 93 LEU 93 243 243 LEU LEU A . n A 1 94 ASP 94 244 244 ASP ASP A . n A 1 95 HIS 95 245 245 HIS HIS A . n A 1 96 PRO 96 246 246 PRO PRO A . n A 1 97 ASN 97 247 247 ASN ASN A . n A 1 98 VAL 98 248 248 VAL VAL A . n A 1 99 VAL 99 249 249 VAL VAL A . n A 1 100 LYS 100 250 250 LYS LYS A . n A 1 101 LEU 101 251 251 LEU LEU A . n A 1 102 VAL 102 252 252 VAL VAL A . n A 1 103 GLU 103 253 253 GLU GLU A . n A 1 104 VAL 104 254 254 VAL VAL A . n A 1 105 LEU 105 255 255 LEU LEU A . n A 1 106 ASP 106 256 256 ASP ASP A . n A 1 107 ASP 107 257 257 ASP ASP A . n A 1 108 PRO 108 258 258 PRO PRO A . n A 1 109 ASN 109 259 259 ASN ASN A . n A 1 110 GLU 110 260 260 GLU GLU A . n A 1 111 ASP 111 261 261 ASP ASP A . n A 1 112 HIS 112 262 262 HIS HIS A . n A 1 113 LEU 113 263 263 LEU LEU A . n A 1 114 TYR 114 264 264 TYR TYR A . n A 1 115 MET 115 265 265 MET MET A . n A 1 116 VAL 116 266 266 VAL VAL A . n A 1 117 PHE 117 267 267 PHE PHE A . n A 1 118 GLU 118 268 268 GLU GLU A . n A 1 119 LEU 119 269 269 LEU LEU A . n A 1 120 VAL 120 270 270 VAL VAL A . n A 1 121 ASN 121 271 271 ASN ASN A . n A 1 122 GLN 122 272 272 GLN GLN A . n A 1 123 GLY 123 273 273 GLY GLY A . n A 1 124 PRO 124 274 274 PRO PRO A . n A 1 125 VAL 125 275 275 VAL VAL A . n A 1 126 MET 126 276 276 MET MET A . n A 1 127 GLU 127 277 277 GLU GLU A . n A 1 128 VAL 128 278 278 VAL VAL A . n A 1 129 PRO 129 279 279 PRO PRO A . n A 1 130 THR 130 280 280 THR THR A . n A 1 131 LEU 131 281 281 LEU LEU A . n A 1 132 LYS 132 282 282 LYS LYS A . n A 1 133 PRO 133 283 283 PRO PRO A . n A 1 134 LEU 134 284 284 LEU LEU A . n A 1 135 SER 135 285 285 SER SER A . n A 1 136 GLU 136 286 286 GLU GLU A . n A 1 137 ASP 137 287 287 ASP ASP A . n A 1 138 GLN 138 288 288 GLN GLN A . n A 1 139 ALA 139 289 289 ALA ALA A . n A 1 140 ARG 140 290 290 ARG ARG A . n A 1 141 PHE 141 291 291 PHE PHE A . n A 1 142 TYR 142 292 292 TYR TYR A . n A 1 143 PHE 143 293 293 PHE PHE A . n A 1 144 GLN 144 294 294 GLN GLN A . n A 1 145 ASP 145 295 295 ASP ASP A . n A 1 146 LEU 146 296 296 LEU LEU A . n A 1 147 ILE 147 297 297 ILE ILE A . n A 1 148 LYS 148 298 298 LYS LYS A . n A 1 149 GLY 149 299 299 GLY GLY A . n A 1 150 ILE 150 300 300 ILE ILE A . n A 1 151 GLU 151 301 301 GLU GLU A . n A 1 152 TYR 152 302 302 TYR TYR A . n A 1 153 LEU 153 303 303 LEU LEU A . n A 1 154 HIS 154 304 304 HIS HIS A . n A 1 155 TYR 155 305 305 TYR TYR A . n A 1 156 GLN 156 306 306 GLN GLN A . n A 1 157 LYS 157 307 307 LYS LYS A . n A 1 158 ILE 158 308 308 ILE ILE A . n A 1 159 ILE 159 309 309 ILE ILE A . n A 1 160 HIS 160 310 310 HIS HIS A . n A 1 161 ARG 161 311 311 ARG ARG A . n A 1 162 ASP 162 312 312 ASP ASP A . n A 1 163 ILE 163 313 313 ILE ILE A . n A 1 164 LYS 164 314 314 LYS LYS A . n A 1 165 PRO 165 315 315 PRO PRO A . n A 1 166 SER 166 316 316 SER SER A . n A 1 167 ASN 167 317 317 ASN ASN A . n A 1 168 LEU 168 318 318 LEU LEU A . n A 1 169 LEU 169 319 319 LEU LEU A . n A 1 170 VAL 170 320 320 VAL VAL A . n A 1 171 GLY 171 321 321 GLY GLY A . n A 1 172 GLU 172 322 322 GLU GLU A . n A 1 173 ASP 173 323 323 ASP ASP A . n A 1 174 GLY 174 324 324 GLY GLY A . n A 1 175 HIS 175 325 325 HIS HIS A . n A 1 176 ILE 176 326 326 ILE ILE A . n A 1 177 LYS 177 327 327 LYS LYS A . n A 1 178 ILE 178 328 328 ILE ILE A . n A 1 179 ALA 179 329 329 ALA ALA A . n A 1 180 ASP 180 330 330 ASP ASP A . n A 1 181 PHE 181 331 331 PHE PHE A . n A 1 182 GLY 182 332 332 GLY GLY A . n A 1 183 VAL 183 333 333 VAL VAL A . n A 1 184 SER 184 334 334 SER SER A . n A 1 185 ASN 185 335 335 ASN ASN A . n A 1 186 GLU 186 336 336 GLU GLU A . n A 1 187 PHE 187 337 337 PHE PHE A . n A 1 188 LYS 188 338 338 LYS LYS A . n A 1 189 GLY 189 339 339 GLY GLY A . n A 1 190 SER 190 340 340 SER SER A . n A 1 191 ASP 191 341 341 ASP ASP A . n A 1 192 ALA 192 342 342 ALA ALA A . n A 1 193 LEU 193 343 343 LEU LEU A . n A 1 194 LEU 194 344 344 LEU LEU A . n A 1 195 SER 195 345 345 SER SER A . n A 1 196 ASN 196 346 346 ASN ASN A . n A 1 197 THR 197 347 347 THR THR A . n A 1 198 VAL 198 348 348 VAL VAL A . n A 1 199 GLY 199 349 349 GLY GLY A . n A 1 200 THR 200 350 350 THR THR A . n A 1 201 PRO 201 351 351 PRO PRO A . n A 1 202 ALA 202 352 352 ALA ALA A . n A 1 203 PHE 203 353 353 PHE PHE A . n A 1 204 MET 204 354 354 MET MET A . n A 1 205 ALA 205 355 355 ALA ALA A . n A 1 206 PRO 206 356 356 PRO PRO A . n A 1 207 GLU 207 357 357 GLU GLU A . n A 1 208 SER 208 358 358 SER SER A . n A 1 209 LEU 209 359 359 LEU LEU A . n A 1 210 SER 210 360 360 SER SER A . n A 1 211 GLU 211 361 361 GLU GLU A . n A 1 212 THR 212 362 362 THR THR A . n A 1 213 ARG 213 363 363 ARG ARG A . n A 1 214 LYS 214 364 364 LYS LYS A . n A 1 215 ILE 215 365 365 ILE ILE A . n A 1 216 PHE 216 366 366 PHE PHE A . n A 1 217 SER 217 367 367 SER SER A . n A 1 218 GLY 218 368 368 GLY GLY A . n A 1 219 LYS 219 369 369 LYS LYS A . n A 1 220 ALA 220 370 370 ALA ALA A . n A 1 221 LEU 221 371 371 LEU LEU A . n A 1 222 ASP 222 372 372 ASP ASP A . n A 1 223 VAL 223 373 373 VAL VAL A . n A 1 224 TRP 224 374 374 TRP TRP A . n A 1 225 ALA 225 375 375 ALA ALA A . n A 1 226 MET 226 376 376 MET MET A . n A 1 227 GLY 227 377 377 GLY GLY A . n A 1 228 VAL 228 378 378 VAL VAL A . n A 1 229 THR 229 379 379 THR THR A . n A 1 230 LEU 230 380 380 LEU LEU A . n A 1 231 TYR 231 381 381 TYR TYR A . n A 1 232 CYS 232 382 382 CYS CYS A . n A 1 233 PHE 233 383 383 PHE PHE A . n A 1 234 VAL 234 384 384 VAL VAL A . n A 1 235 PHE 235 385 385 PHE PHE A . n A 1 236 GLY 236 386 386 GLY GLY A . n A 1 237 GLN 237 387 387 GLN GLN A . n A 1 238 CYS 238 388 388 CYS CYS A . n A 1 239 PRO 239 389 389 PRO PRO A . n A 1 240 PHE 240 390 390 PHE PHE A . n A 1 241 MET 241 391 391 MET MET A . n A 1 242 ASP 242 392 392 ASP ASP A . n A 1 243 GLU 243 393 393 GLU GLU A . n A 1 244 ARG 244 394 394 ARG ARG A . n A 1 245 ILE 245 395 395 ILE ILE A . n A 1 246 MET 246 396 396 MET MET A . n A 1 247 CAS 247 397 397 CAS CAS A . n A 1 248 LEU 248 398 398 LEU LEU A . n A 1 249 HIS 249 399 399 HIS HIS A . n A 1 250 SER 250 400 400 SER SER A . n A 1 251 LYS 251 401 401 LYS LYS A . n A 1 252 ILE 252 402 402 ILE ILE A . n A 1 253 LYS 253 403 403 LYS LYS A . n A 1 254 SER 254 404 404 SER SER A . n A 1 255 GLN 255 405 405 GLN GLN A . n A 1 256 ALA 256 406 406 ALA ALA A . n A 1 257 LEU 257 407 407 LEU LEU A . n A 1 258 GLU 258 408 408 GLU GLU A . n A 1 259 PHE 259 409 409 PHE PHE A . n A 1 260 PRO 260 410 410 PRO PRO A . n A 1 261 ASP 261 411 411 ASP ASP A . n A 1 262 GLN 262 412 412 GLN GLN A . n A 1 263 PRO 263 413 413 PRO PRO A . n A 1 264 ASP 264 414 414 ASP ASP A . n A 1 265 ILE 265 415 415 ILE ILE A . n A 1 266 ALA 266 416 416 ALA ALA A . n A 1 267 GLU 267 417 417 GLU GLU A . n A 1 268 ASP 268 418 418 ASP ASP A . n A 1 269 LEU 269 419 419 LEU LEU A . n A 1 270 LYS 270 420 420 LYS LYS A . n A 1 271 ASP 271 421 421 ASP ASP A . n A 1 272 LEU 272 422 422 LEU LEU A . n A 1 273 ILE 273 423 423 ILE ILE A . n A 1 274 THR 274 424 424 THR THR A . n A 1 275 ARG 275 425 425 ARG ARG A . n A 1 276 MET 276 426 426 MET MET A . n A 1 277 LEU 277 427 427 LEU LEU A . n A 1 278 ASP 278 428 428 ASP ASP A . n A 1 279 LYS 279 429 429 LYS LYS A . n A 1 280 ASN 280 430 430 ASN ASN A . n A 1 281 PRO 281 431 431 PRO PRO A . n A 1 282 GLU 282 432 432 GLU GLU A . n A 1 283 SER 283 433 433 SER SER A . n A 1 284 ARG 284 434 434 ARG ARG A . n A 1 285 ILE 285 435 435 ILE ILE A . n A 1 286 VAL 286 436 436 VAL VAL A . n A 1 287 VAL 287 437 437 VAL VAL A . n A 1 288 PRO 288 438 438 PRO PRO A . n A 1 289 GLU 289 439 439 GLU GLU A . n A 1 290 ILE 290 440 440 ILE ILE A . n A 1 291 LYS 291 441 441 LYS LYS A . n A 1 292 LEU 292 442 442 LEU LEU A . n A 1 293 HIS 293 443 443 HIS HIS A . n A 1 294 PRO 294 444 444 PRO PRO A . n A 1 295 TRP 295 445 445 TRP TRP A . n A 1 296 VAL 296 446 446 VAL VAL A . n A 1 297 THR 297 447 447 THR THR A . n A 1 298 ARG 298 448 448 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 91X 1 501 501 91X C10 A . C 3 GOL 1 502 601 GOL GOL A . D 3 GOL 1 503 602 GOL GOL A . E 3 GOL 1 504 603 GOL GOL A . F 4 CL 1 505 701 CL CL A . G 5 HOH 1 601 24 HOH HOH A . G 5 HOH 2 602 7 HOH HOH A . G 5 HOH 3 603 21 HOH HOH A . G 5 HOH 4 604 27 HOH HOH A . G 5 HOH 5 605 15 HOH HOH A . G 5 HOH 6 606 1 HOH HOH A . G 5 HOH 7 607 3 HOH HOH A . G 5 HOH 8 608 2 HOH HOH A . G 5 HOH 9 609 14 HOH HOH A . G 5 HOH 10 610 22 HOH HOH A . G 5 HOH 11 611 17 HOH HOH A . G 5 HOH 12 612 8 HOH HOH A . G 5 HOH 13 613 29 HOH HOH A . G 5 HOH 14 614 28 HOH HOH A . G 5 HOH 15 615 9 HOH HOH A . G 5 HOH 16 616 10 HOH HOH A . G 5 HOH 17 617 26 HOH HOH A . G 5 HOH 18 618 35 HOH HOH A . G 5 HOH 19 619 18 HOH HOH A . G 5 HOH 20 620 36 HOH HOH A . G 5 HOH 21 621 19 HOH HOH A . G 5 HOH 22 622 33 HOH HOH A . G 5 HOH 23 623 6 HOH HOH A . G 5 HOH 24 624 32 HOH HOH A . G 5 HOH 25 625 16 HOH HOH A . G 5 HOH 26 626 13 HOH HOH A . G 5 HOH 27 627 37 HOH HOH A . G 5 HOH 28 628 25 HOH HOH A . G 5 HOH 29 629 41 HOH HOH A . G 5 HOH 30 630 42 HOH HOH A . G 5 HOH 31 631 11 HOH HOH A . G 5 HOH 32 632 40 HOH HOH A . G 5 HOH 33 633 30 HOH HOH A . G 5 HOH 34 634 4 HOH HOH A . G 5 HOH 35 635 31 HOH HOH A . G 5 HOH 36 636 20 HOH HOH A . G 5 HOH 37 637 12 HOH HOH A . G 5 HOH 38 638 39 HOH HOH A . G 5 HOH 39 639 5 HOH HOH A . G 5 HOH 40 640 38 HOH HOH A . G 5 HOH 41 641 23 HOH HOH A . G 5 HOH 42 642 34 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CAS _pdbx_struct_mod_residue.label_seq_id 247 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CAS _pdbx_struct_mod_residue.auth_seq_id 397 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 780 ? 1 MORE -12 ? 1 'SSA (A^2)' 13060 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-05 2 'Structure model' 1 1 2019-06-19 3 'Structure model' 1 2 2020-05-20 4 'Structure model' 1 3 2020-06-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' struct 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 4 'Structure model' struct # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct.title' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' 13 4 'Structure model' '_struct.title' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -2.6025 -9.6649 34.9625 0.7105 0.4973 0.3536 -0.0264 0.0876 0.0368 5.4158 7.4510 5.3614 0.0829 -0.2042 -0.6561 0.0105 -0.6523 -0.0358 1.4547 -0.0781 0.4960 0.8515 -0.2843 0.0671 'X-RAY DIFFRACTION' 2 ? refined -0.2153 -14.8806 17.8486 0.2650 0.3498 0.3780 0.0323 0.0094 0.0635 2.4372 4.5995 3.8367 -0.1865 0.4943 1.2483 0.0888 -0.0358 0.0570 0.3036 0.0242 0.0185 0.0108 -0.2583 -0.1173 'X-RAY DIFFRACTION' 3 ? refined -4.4988 -15.0696 1.0804 0.4055 0.4914 0.2830 0.0695 -0.0125 0.0698 8.3273 4.6084 3.6178 1.0539 0.4648 -0.0317 0.0773 0.5976 0.4700 -0.5603 0.0916 0.3319 -0.1818 -0.4993 -0.1932 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 161 through 243 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 244 through 386 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 387 through 448 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 163 ? ? 64.93 -115.05 2 1 LYS A 168 ? ? -114.94 -146.71 3 1 TYR A 176 ? ? -127.13 -99.91 4 1 ASP A 312 ? ? -148.64 42.93 5 1 ASP A 330 ? ? 68.45 82.08 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 VAL _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 270 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 271 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -144.05 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 151 ? A GLY 1 2 1 Y 1 A SER 152 ? A SER 2 3 1 Y 1 A SER 153 ? A SER 3 4 1 Y 1 A GLY 154 ? A GLY 4 5 1 Y 1 A SER 155 ? A SER 5 6 1 Y 1 A SER 156 ? A SER 6 7 1 Y 1 A GLY 157 ? A GLY 7 8 1 Y 1 A ASP 158 ? A ASP 8 9 1 Y 1 A CYS 159 ? A CYS 9 10 1 Y 1 A LYS 200 ? A LYS 50 11 1 Y 1 A LEU 201 ? A LEU 51 12 1 Y 1 A ILE 202 ? A ILE 52 13 1 Y 1 A ARG 203 ? A ARG 53 14 1 Y 1 A GLN 204 ? A GLN 54 15 1 Y 1 A ALA 205 ? A ALA 55 16 1 Y 1 A GLY 206 ? A GLY 56 17 1 Y 1 A PHE 207 ? A PHE 57 18 1 Y 1 A PRO 208 ? A PRO 58 19 1 Y 1 A ARG 209 ? A ARG 59 20 1 Y 1 A ARG 210 ? A ARG 60 21 1 Y 1 A PRO 211 ? A PRO 61 22 1 Y 1 A PRO 212 ? A PRO 62 23 1 Y 1 A PRO 213 ? A PRO 63 24 1 Y 1 A ARG 214 ? A ARG 64 25 1 Y 1 A GLY 215 ? A GLY 65 26 1 Y 1 A THR 216 ? A THR 66 27 1 Y 1 A ARG 217 ? A ARG 67 28 1 Y 1 A PRO 218 ? A PRO 68 29 1 Y 1 A ALA 219 ? A ALA 69 30 1 Y 1 A PRO 220 ? A PRO 70 31 1 Y 1 A GLY 221 ? A GLY 71 32 1 Y 1 A GLY 222 ? A GLY 72 33 1 Y 1 A CYS 223 ? A CYS 73 34 1 Y 1 A ILE 224 ? A ILE 74 35 1 Y 1 A GLN 225 ? A GLN 75 36 1 Y 1 A PRO 226 ? A PRO 76 37 1 Y 1 A ARG 227 ? A ARG 77 38 1 Y 1 A GLY 228 ? A GLY 78 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 91X _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 91X _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-(1H-tetrazol-5-yl)-10lambda~6~-thioxanthene-9,10,10-trione' 91X 3 GLYCEROL GOL 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #