data_5YZE # _entry.id 5YZE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YZE pdb_00005yze 10.2210/pdb5yze/pdb WWPDB D_1300006165 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-17 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 3 0 2021-01-20 4 'Structure model' 3 1 2024-03-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Polymer sequence' 8 3 'Structure model' 'Structure summary' 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' chem_comp 4 2 'Structure model' entity 5 2 'Structure model' pdbx_branch_scheme 6 2 'Structure model' pdbx_chem_comp_identifier 7 2 'Structure model' pdbx_entity_branch 8 2 'Structure model' pdbx_entity_branch_descriptor 9 2 'Structure model' pdbx_entity_branch_link 10 2 'Structure model' pdbx_entity_branch_list 11 2 'Structure model' pdbx_entity_nonpoly 12 2 'Structure model' pdbx_nonpoly_scheme 13 2 'Structure model' pdbx_struct_assembly_gen 14 2 'Structure model' pdbx_struct_conn_angle 15 2 'Structure model' pdbx_validate_close_contact 16 2 'Structure model' struct_asym 17 2 'Structure model' struct_conn 18 2 'Structure model' struct_conn_type 19 2 'Structure model' struct_site 20 2 'Structure model' struct_site_gen 21 3 'Structure model' chem_comp 22 3 'Structure model' entity_poly 23 3 'Structure model' struct_conn 24 4 'Structure model' chem_comp_atom 25 4 'Structure model' chem_comp_bond 26 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_asym_id' 10 2 'Structure model' '_atom_site.label_atom_id' 11 2 'Structure model' '_atom_site.label_comp_id' 12 2 'Structure model' '_atom_site.label_entity_id' 13 2 'Structure model' '_atom_site.type_symbol' 14 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 15 2 'Structure model' '_atom_site_anisotrop.U[1][2]' 16 2 'Structure model' '_atom_site_anisotrop.U[1][3]' 17 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 18 2 'Structure model' '_atom_site_anisotrop.U[2][3]' 19 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 20 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 21 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 22 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 23 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 24 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 25 2 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 26 2 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 27 2 'Structure model' '_atom_site_anisotrop.type_symbol' 28 2 'Structure model' '_chem_comp.mon_nstd_flag' 29 2 'Structure model' '_chem_comp.name' 30 2 'Structure model' '_chem_comp.type' 31 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 32 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 33 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 34 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 35 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 36 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 37 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 38 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 39 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 40 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 41 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 42 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 43 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 44 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 45 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 46 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 47 2 'Structure model' '_pdbx_struct_conn_angle.value' 48 2 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 49 2 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 50 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 51 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 52 2 'Structure model' '_struct_conn.conn_type_id' 53 2 'Structure model' '_struct_conn.id' 54 2 'Structure model' '_struct_conn.pdbx_dist_value' 55 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 56 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 57 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 58 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 59 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 60 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 61 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 62 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 63 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 64 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 65 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 66 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 67 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 68 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 69 2 'Structure model' '_struct_conn_type.id' 70 3 'Structure model' '_chem_comp.pdbx_synonyms' 71 3 'Structure model' '_entity_poly.type' 72 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 73 4 'Structure model' '_database_2.pdbx_DOI' 74 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YZE _pdbx_database_status.recvd_initial_deposition_date 2017-12-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, M.H.' 1 ? 'Chen, Y.W.' 2 ? 'Wu, P.C.' 3 ? 'Satange, R.B.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int J Mol Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1422-0067 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'CoII(Chromomycin)2 Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/ijms19092796 _citation.pdbx_database_id_PubMed 30227633 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, Y.W.' 1 ? primary 'Satange, R.' 2 ? primary 'Wu, P.C.' 3 ? primary 'Jhan, C.R.' 4 ? primary 'Chang, C.K.' 5 ? primary 'Chung, K.R.' 6 ? primary 'Waring, M.J.' 7 ? primary 'Lin, S.W.' 8 ? primary 'Hsieh, L.C.' 9 ? primary 'Hou, M.H.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*A)-3') ; 3295.150 2 ? ? ? ? 2 branched man ;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol ; 432.506 2 ? ? ? ? 3 branched man '2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 2 ? ? ? ? 4 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 2 ? ? ? ? 5 non-polymer syn 'COBALT (II) ION' 58.933 3 ? ? ? ? 6 water nat water 18.015 77 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCCGCCGCCGA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH 5 'COBALT (II) ION' CO 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DG n 1 8 DC n 1 9 DC n 1 10 DG n 1 11 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ? 3 3 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 4 3 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 1 CDR C3 H3 2 CDR O1 HO1 sing ? 2 2 2 CDR C3 H3 3 ERI O1 HO1 sing ? 3 3 1 ARI C3 H3 2 1GL O1 HO1 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose ;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose ; 'C7 H14 O4' 162.184 ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194 CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose ;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose ; 'C9 H16 O5' 204.220 HOH non-polymer . WATER ? 'H2 O' 18.015 # _pdbx_chem_comp_identifier.comp_id 1GL _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 ? ? ? A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DA 11 11 11 DA DA A . n B 1 1 DT 1 12 12 DT DT B . n B 1 2 DC 2 13 ? ? ? B . n B 1 3 DC 3 14 14 DC DC B . n B 1 4 DG 4 15 15 DG DG B . n B 1 5 DC 5 16 16 DC DC B . n B 1 6 DC 6 17 17 DC DC B . n B 1 7 DG 7 18 18 DG DG B . n B 1 8 DC 8 19 19 DC DC B . n B 1 9 DC 9 20 20 DC DC B . n B 1 10 DG 10 21 21 DG DG B . n B 1 11 DA 11 22 22 DA DA B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 CDR 1 C CDR 1 A CDR 101 n C 2 CDR 2 C CDR 2 A CDR 102 n C 2 ERI 3 C ERI 3 A ERI 103 n D 3 ARI 1 D ARI 1 A ARI 105 n D 3 1GL 2 D 1GL 2 A 1GL 104 n E 3 ARI 1 E ARI 1 B ARI 102 n E 3 1GL 2 E 1GL 2 B 1GL 101 n F 2 CDR 1 F CDR 1 B CDR 104 n F 2 CDR 2 F CDR 2 B CDR 105 n F 2 ERI 3 F ERI 3 B ERI 106 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CPH 1 106 106 CPH CPH A . H 5 CO 1 107 107 CO CO A . I 5 CO 1 108 108 CO CO A . J 4 CPH 1 103 103 CPH CPH B . K 5 CO 1 107 107 CO CO B . L 6 HOH 1 201 201 HOH HOH A . L 6 HOH 2 202 202 HOH HOH A . L 6 HOH 3 203 203 HOH HOH A . L 6 HOH 4 204 204 HOH HOH A . L 6 HOH 5 205 205 HOH HOH A . L 6 HOH 6 206 206 HOH HOH A . L 6 HOH 7 207 207 HOH HOH A . L 6 HOH 8 208 208 HOH HOH A . L 6 HOH 9 209 209 HOH HOH A . L 6 HOH 10 210 210 HOH HOH A . L 6 HOH 11 211 211 HOH HOH A . L 6 HOH 12 212 212 HOH HOH A . L 6 HOH 13 213 213 HOH HOH A . L 6 HOH 14 214 214 HOH HOH A . L 6 HOH 15 215 215 HOH HOH A . L 6 HOH 16 216 216 HOH HOH A . L 6 HOH 17 217 217 HOH HOH A . L 6 HOH 18 218 218 HOH HOH A . L 6 HOH 19 219 219 HOH HOH A . L 6 HOH 20 220 220 HOH HOH A . L 6 HOH 21 221 221 HOH HOH A . L 6 HOH 22 222 222 HOH HOH A . L 6 HOH 23 223 223 HOH HOH A . L 6 HOH 24 224 224 HOH HOH A . L 6 HOH 25 225 225 HOH HOH A . L 6 HOH 26 226 226 HOH HOH A . L 6 HOH 27 227 227 HOH HOH A . L 6 HOH 28 228 228 HOH HOH A . L 6 HOH 29 229 229 HOH HOH A . L 6 HOH 30 230 230 HOH HOH A . L 6 HOH 31 231 231 HOH HOH A . L 6 HOH 32 232 232 HOH HOH A . L 6 HOH 33 233 233 HOH HOH A . L 6 HOH 34 234 234 HOH HOH A . L 6 HOH 35 235 235 HOH HOH A . L 6 HOH 36 236 236 HOH HOH A . L 6 HOH 37 237 237 HOH HOH A . M 6 HOH 1 201 201 HOH HOH B . M 6 HOH 2 202 202 HOH HOH B . M 6 HOH 3 203 203 HOH HOH B . M 6 HOH 4 204 204 HOH HOH B . M 6 HOH 5 205 205 HOH HOH B . M 6 HOH 6 206 206 HOH HOH B . M 6 HOH 7 207 207 HOH HOH B . M 6 HOH 8 208 208 HOH HOH B . M 6 HOH 9 209 209 HOH HOH B . M 6 HOH 10 210 210 HOH HOH B . M 6 HOH 11 211 211 HOH HOH B . M 6 HOH 12 212 212 HOH HOH B . M 6 HOH 13 213 213 HOH HOH B . M 6 HOH 14 214 214 HOH HOH B . M 6 HOH 15 215 215 HOH HOH B . M 6 HOH 16 216 216 HOH HOH B . M 6 HOH 17 217 217 HOH HOH B . M 6 HOH 18 218 218 HOH HOH B . M 6 HOH 19 219 219 HOH HOH B . M 6 HOH 20 220 220 HOH HOH B . M 6 HOH 21 221 221 HOH HOH B . M 6 HOH 22 222 222 HOH HOH B . M 6 HOH 23 223 223 HOH HOH B . M 6 HOH 24 224 224 HOH HOH B . M 6 HOH 25 225 225 HOH HOH B . M 6 HOH 26 226 226 HOH HOH B . M 6 HOH 27 227 227 HOH HOH B . M 6 HOH 28 228 228 HOH HOH B . M 6 HOH 29 229 229 HOH HOH B . M 6 HOH 30 230 230 HOH HOH B . M 6 HOH 31 231 231 HOH HOH B . M 6 HOH 32 232 232 HOH HOH B . M 6 HOH 33 233 233 HOH HOH B . M 6 HOH 34 234 234 HOH HOH B . M 6 HOH 35 235 235 HOH HOH B . M 6 HOH 36 236 236 HOH HOH B . M 6 HOH 37 237 237 HOH HOH B . M 6 HOH 38 238 238 HOH HOH B . M 6 HOH 39 239 239 HOH HOH B . M 6 HOH 40 240 240 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 5 # _cell.entry_id 5YZE _cell.length_a 46.401 _cell.length_b 46.401 _cell.length_c 73.822 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YZE _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YZE _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.64 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 66.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.75mM DNA, 1.5mM Chro, 3mM Cobalt, 50mM Sodium Cacodylate (pH= 6.0), 1mM MgCl2, 1% MPD eqillibriated against 30% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-09-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.56418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.56418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5YZE _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.200 _reflns.d_resolution_high 1.870 _reflns.number_obs 7726 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_netI_over_sigmaI 44.5500 _reflns.B_iso_Wilson_estimate 31.27 _reflns.pdbx_redundancy 4.000 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.87 _reflns_shell.d_res_low 1.94 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.171 _reflns_shell.pdbx_Rsym_value 0.171 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 775 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YZE _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7708 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.18 _refine.ls_d_res_high 1.87 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.196 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.252 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.593 _refine.ls_number_reflns_R_free 354 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 47.48 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method NONE _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.142 _refine.pdbx_overall_phase_error 30.171 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 398 _refine_hist.pdbx_number_atoms_ligand 169 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 644 _refine_hist.d_res_high 1.87 _refine_hist.d_res_low 27.18 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 622 'X-RAY DIFFRACTION' ? f_angle_d 1.008 ? ? 914 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 26.219 ? ? 276 'X-RAY DIFFRACTION' ? f_chiral_restr 0.050 ? ? 120 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 26 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.8702 2.1407 2420 0.1855 100.00 0.2465 . . 106 . . . . 'X-RAY DIFFRACTION' . 2.1407 2.6967 2442 0.2374 100.00 0.2930 . . 120 . . . . 'X-RAY DIFFRACTION' . 2.6967 27.1866 2492 0.1819 100.00 0.2395 . . 128 . . . . # _struct.entry_id 5YZE _struct.title 'Crystal structure of the [Co2+-(chromomycin A3)2]-d(CCG)3 complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YZE _struct_keywords.text 'Drug-DNA complex, Chromomycin A3, CCG repeats, i-motif, flipout, DNA, ANTIBIOTICS-DNA complex' _struct_keywords.pdbx_keywords ANTIBIOTICS/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 4 ? K N N 5 ? L N N 6 ? M N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5YZE _struct_ref.pdbx_db_accession 5YZE _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YZE A 1 ? 11 ? 5YZE 1 ? 11 ? 1 11 2 1 5YZE B 1 ? 11 ? 5YZE 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 990 ? 1 MORE -20 ? 1 'SSA (A^2)' 4140 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? G CPH . C6 ? ? ? 1_555 D ARI . O1 ? ? A CPH 106 D ARI 1 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale2 covale one ? G CPH . C2 ? ? ? 1_555 F CDR . O1 ? ? A CPH 106 F CDR 1 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale3 covale one ? J CPH . C2 ? ? ? 1_555 C CDR . O1 ? ? B CPH 103 C CDR 1 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale4 covale one ? J CPH . C6 ? ? ? 1_555 E ARI . O1 ? ? B CPH 103 E ARI 1 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale5 covale one ? C CDR . C3 ? ? ? 1_555 C CDR . O1 ? ? C CDR 1 C CDR 2 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale6 covale one ? C CDR . C3 ? ? ? 1_555 C ERI . O1 ? ? C CDR 2 C ERI 3 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale7 covale one ? D ARI . C3 ? ? ? 1_555 D 1GL . O1 ? ? D ARI 1 D 1GL 2 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale8 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale9 covale one ? F CDR . C3 ? ? ? 1_555 F CDR . O1 ? ? F CDR 1 F CDR 2 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale10 covale one ? F CDR . C3 ? ? ? 1_555 F ERI . O1 ? ? F CDR 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.378 ? ? metalc1 metalc ? ? A DG 7 N7 ? ? ? 1_555 I CO . CO ? ? A DG 7 A CO 108 1_555 ? ? ? ? ? ? ? 2.194 ? ? metalc2 metalc ? ? G CPH . O1 ? ? ? 1_555 H CO . CO ? ? A CPH 106 A CO 107 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc3 metalc ? ? G CPH . O9 ? ? ? 1_555 H CO . CO ? ? A CPH 106 A CO 107 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc4 metalc ? ? H CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 107 A HOH 202 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc5 metalc ? ? H CO . CO ? ? ? 1_555 J CPH . O9 ? ? A CO 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.953 ? ? metalc6 metalc ? ? H CO . CO ? ? ? 1_555 J CPH . O1 ? ? A CO 107 B CPH 103 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc7 metalc ? ? H CO . CO ? ? ? 1_555 M HOH . O ? ? A CO 107 B HOH 208 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc8 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 201 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc9 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 203 1_555 ? ? ? ? ? ? ? 2.028 ? ? metalc10 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 217 1_555 ? ? ? ? ? ? ? 2.199 ? ? metalc11 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 221 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc12 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 229 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc13 metalc ? ? B DG 7 N7 ? ? ? 1_555 K CO . CO ? ? B DG 18 B CO 107 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc14 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 202 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc15 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 206 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc16 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 216 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc17 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 220 1_555 ? ? ? ? ? ? ? 1.936 ? ? metalc18 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 235 1_555 ? ? ? ? ? ? ? 2.198 ? ? hydrog1 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 8 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 8 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 8 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 201 ? 1_555 94.4 ? 2 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 203 ? 1_555 93.5 ? 3 O ? L HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 203 ? 1_555 92.1 ? 4 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 88.7 ? 5 O ? L HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 171.4 ? 6 O ? L HOH . ? A HOH 203 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 95.8 ? 7 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 91.1 ? 8 O ? L HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 86.5 ? 9 O ? L HOH . ? A HOH 203 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 175.3 ? 10 O ? L HOH . ? A HOH 217 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 85.4 ? 11 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 175.7 ? 12 O ? L HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 82.9 ? 13 O ? L HOH . ? A HOH 203 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 83.2 ? 14 O ? L HOH . ? A HOH 217 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 94.5 ? 15 O ? L HOH . ? A HOH 221 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 92.2 ? 16 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? G CPH . ? A CPH 106 ? 1_555 81.2 ? 17 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 94.8 ? 18 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 94.7 ? 19 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 97.4 ? 20 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 178.6 ? 21 O ? L HOH . ? A HOH 202 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 85.2 ? 22 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 83.1 ? 23 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 96.9 ? 24 O ? L HOH . ? A HOH 202 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 167.8 ? 25 O9 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 83.1 ? 26 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 165.4 ? 27 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 86.0 ? 28 O ? L HOH . ? A HOH 202 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 93.1 ? 29 O9 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 95.4 ? 30 O1 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 91.6 ? 31 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 202 ? 1_555 95.8 ? 32 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 206 ? 1_555 93.1 ? 33 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 206 ? 1_555 88.8 ? 34 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 88.7 ? 35 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 175.4 ? 36 O ? M HOH . ? B HOH 206 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 91.3 ? 37 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 220 ? 1_555 92.4 ? 38 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 220 ? 1_555 90.2 ? 39 O ? M HOH . ? B HOH 206 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 220 ? 1_555 174.5 ? 40 O ? M HOH . ? B HOH 216 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 220 ? 1_555 89.3 ? 41 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 175.8 ? 42 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 88.2 ? 43 O ? M HOH . ? B HOH 206 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 88.1 ? 44 O ? M HOH . ? B HOH 216 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 87.2 ? 45 O ? M HOH . ? B HOH 220 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 86.5 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 C4 _pdbx_validate_close_contact.auth_asym_id_1 F _pdbx_validate_close_contact.auth_comp_id_1 CDR _pdbx_validate_close_contact.auth_seq_id_1 2 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O1 _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 ERI _pdbx_validate_close_contact.auth_seq_id_2 3 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+2/3 3 -x+y,-x,z+1/3 4 -y,-x,-z+1/3 5 -x+y,y,-z+2/3 6 x,x-y,-z # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -5.6046 18.0452 7.7904 0.2848 0.2422 0.3881 -0.0020 0.0108 -0.0256 4.0819 9.5702 5.4422 -0.0868 -0.3230 2.4569 0.1027 -0.5846 0.3419 -0.1725 -0.0314 1.3332 -0.1212 0.3643 -0.4439 'X-RAY DIFFRACTION' 2 ? refined -5.6415 8.7299 4.4588 0.3199 0.2330 0.3730 0.0117 -0.0225 -0.0258 4.1510 9.2141 4.6953 0.2600 -0.6464 1.7979 0.2656 -0.5161 0.3668 0.3566 0.1111 1.1762 0.1964 -0.1666 -0.3674 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 11 ;chain 'A' and (resid 1 through 11 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 12 B 22 ;chain 'B' and (resid 12 through 22 ) ; ? ? ? ? ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 236 ? . 6.65 2 1 O ? A HOH 237 ? . 8.48 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DC 2 ? A DC 2 2 1 Y 1 B DC 13 ? B DC 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1GL O1 O N N 1 1GL C1 C N S 2 1GL C2 C N N 3 1GL C3 C N R 4 1GL O3 O N N 5 1GL C4 C N R 6 1GL O4 O N N 7 1GL CME C N N 8 1GL C5 C N R 9 1GL O5 O N N 10 1GL C6 C N N 11 1GL HO1 H N N 12 1GL H1 H N N 13 1GL H2 H N N 14 1GL H22 H N N 15 1GL H3 H N N 16 1GL HO3 H N N 17 1GL H4 H N N 18 1GL HM41 H N N 19 1GL HM42 H N N 20 1GL HM43 H N N 21 1GL H5 H N N 22 1GL H61 H N N 23 1GL H62 H N N 24 1GL H63 H N N 25 ARI O1 O N N 26 ARI C1 C N R 27 ARI C2 C N N 28 ARI C3 C N N 29 ARI C4 C N R 30 ARI O4 O N N 31 ARI CME C N N 32 ARI CO4 C N N 33 ARI OC4 O N N 34 ARI C5 C N R 35 ARI O5 O N N 36 ARI C6 C N N 37 ARI HO1 H N N 38 ARI H1 H N N 39 ARI H2 H N N 40 ARI H22 H N N 41 ARI H3 H N N 42 ARI H32 H N N 43 ARI H4 H N N 44 ARI H41 H N N 45 ARI H42 H N N 46 ARI H43 H N N 47 ARI H5 H N N 48 ARI H61 H N N 49 ARI H62 H N N 50 ARI H63 H N N 51 CDR O1 O N N 52 CDR C1 C N R 53 CDR C2 C N N 54 CDR C3 C N N 55 CDR C4 C N S 56 CDR O4 O N N 57 CDR C5 C N R 58 CDR O5 O N N 59 CDR C6 C N N 60 CDR HO1 H N N 61 CDR H1 H N N 62 CDR H2 H N N 63 CDR H22 H N N 64 CDR H3 H N N 65 CDR H32 H N N 66 CDR H4 H N N 67 CDR HO4 H N N 68 CDR H5 H N N 69 CDR H61 H N N 70 CDR H62 H N N 71 CDR H63 H N N 72 CO CO CO N N 73 CPH C1 C N N 74 CPH O1 O N N 75 CPH C2 C N S 76 CPH C3 C N R 77 CPH C4 C N N 78 CPH C5 C Y N 79 CPH C6 C Y N 80 CPH C7 C Y N 81 CPH C8 C Y N 82 CPH O8 O N N 83 CPH C9 C Y N 84 CPH O9 O N N 85 CPH "C1'" C N S 86 CPH "O1'" O N N 87 CPH C10 C Y N 88 CPH "C2'" C N N 89 CPH "O2'" O N N 90 CPH "C3'" C N S 91 CPH "O3'" O N N 92 CPH "C4'" C N R 93 CPH "O4'" O N N 94 CPH C4A C Y N 95 CPH "C5'" C N N 96 CPH C5A C Y N 97 CPH C8A C Y N 98 CPH C9A C Y N 99 CPH CC7 C N N 100 CPH O6 O N N 101 CPH O2 O N N 102 CPH CME C N N 103 CPH H2 H N N 104 CPH H3 H N N 105 CPH H4 H N N 106 CPH H4A H N N 107 CPH H5 H N N 108 CPH HO8 H N N 109 CPH HO9 H N N 110 CPH "H1'" H N N 111 CPH H10 H N N 112 CPH "H3'" H N N 113 CPH "HO3'" H N N 114 CPH "H4'" H N N 115 CPH "HO4'" H N N 116 CPH "H5'" H N N 117 CPH "H5'A" H N N 118 CPH "H5'B" H N N 119 CPH HC7 H N N 120 CPH HC7A H N N 121 CPH HC7B H N N 122 CPH HO6 H N N 123 CPH HO2 H N N 124 CPH HME H N N 125 CPH HMEA H N N 126 CPH HMEB H N N 127 DA OP3 O N N 128 DA P P N N 129 DA OP1 O N N 130 DA OP2 O N N 131 DA "O5'" O N N 132 DA "C5'" C N N 133 DA "C4'" C N R 134 DA "O4'" O N N 135 DA "C3'" C N S 136 DA "O3'" O N N 137 DA "C2'" C N N 138 DA "C1'" C N R 139 DA N9 N Y N 140 DA C8 C Y N 141 DA N7 N Y N 142 DA C5 C Y N 143 DA C6 C Y N 144 DA N6 N N N 145 DA N1 N Y N 146 DA C2 C Y N 147 DA N3 N Y N 148 DA C4 C Y N 149 DA HOP3 H N N 150 DA HOP2 H N N 151 DA "H5'" H N N 152 DA "H5''" H N N 153 DA "H4'" H N N 154 DA "H3'" H N N 155 DA "HO3'" H N N 156 DA "H2'" H N N 157 DA "H2''" H N N 158 DA "H1'" H N N 159 DA H8 H N N 160 DA H61 H N N 161 DA H62 H N N 162 DA H2 H N N 163 DC OP3 O N N 164 DC P P N N 165 DC OP1 O N N 166 DC OP2 O N N 167 DC "O5'" O N N 168 DC "C5'" C N N 169 DC "C4'" C N R 170 DC "O4'" O N N 171 DC "C3'" C N S 172 DC "O3'" O N N 173 DC "C2'" C N N 174 DC "C1'" C N R 175 DC N1 N N N 176 DC C2 C N N 177 DC O2 O N N 178 DC N3 N N N 179 DC C4 C N N 180 DC N4 N N N 181 DC C5 C N N 182 DC C6 C N N 183 DC HOP3 H N N 184 DC HOP2 H N N 185 DC "H5'" H N N 186 DC "H5''" H N N 187 DC "H4'" H N N 188 DC "H3'" H N N 189 DC "HO3'" H N N 190 DC "H2'" H N N 191 DC "H2''" H N N 192 DC "H1'" H N N 193 DC H41 H N N 194 DC H42 H N N 195 DC H5 H N N 196 DC H6 H N N 197 DG OP3 O N N 198 DG P P N N 199 DG OP1 O N N 200 DG OP2 O N N 201 DG "O5'" O N N 202 DG "C5'" C N N 203 DG "C4'" C N R 204 DG "O4'" O N N 205 DG "C3'" C N S 206 DG "O3'" O N N 207 DG "C2'" C N N 208 DG "C1'" C N R 209 DG N9 N Y N 210 DG C8 C Y N 211 DG N7 N Y N 212 DG C5 C Y N 213 DG C6 C N N 214 DG O6 O N N 215 DG N1 N N N 216 DG C2 C N N 217 DG N2 N N N 218 DG N3 N N N 219 DG C4 C Y N 220 DG HOP3 H N N 221 DG HOP2 H N N 222 DG "H5'" H N N 223 DG "H5''" H N N 224 DG "H4'" H N N 225 DG "H3'" H N N 226 DG "HO3'" H N N 227 DG "H2'" H N N 228 DG "H2''" H N N 229 DG "H1'" H N N 230 DG H8 H N N 231 DG H1 H N N 232 DG H21 H N N 233 DG H22 H N N 234 DT OP3 O N N 235 DT P P N N 236 DT OP1 O N N 237 DT OP2 O N N 238 DT "O5'" O N N 239 DT "C5'" C N N 240 DT "C4'" C N R 241 DT "O4'" O N N 242 DT "C3'" C N S 243 DT "O3'" O N N 244 DT "C2'" C N N 245 DT "C1'" C N R 246 DT N1 N N N 247 DT C2 C N N 248 DT O2 O N N 249 DT N3 N N N 250 DT C4 C N N 251 DT O4 O N N 252 DT C5 C N N 253 DT C7 C N N 254 DT C6 C N N 255 DT HOP3 H N N 256 DT HOP2 H N N 257 DT "H5'" H N N 258 DT "H5''" H N N 259 DT "H4'" H N N 260 DT "H3'" H N N 261 DT "HO3'" H N N 262 DT "H2'" H N N 263 DT "H2''" H N N 264 DT "H1'" H N N 265 DT H3 H N N 266 DT H71 H N N 267 DT H72 H N N 268 DT H73 H N N 269 DT H6 H N N 270 ERI O1 O N N 271 ERI C1 C N R 272 ERI C2 C N N 273 ERI C3 C N S 274 ERI O3 O N N 275 ERI CC3 C N N 276 ERI C4 C N S 277 ERI O4 O N N 278 ERI CME C N N 279 ERI CO4 C N N 280 ERI OC4 O N N 281 ERI C5 C N S 282 ERI O5 O N N 283 ERI C6 C N N 284 ERI HO1 H N N 285 ERI H1 H N N 286 ERI H21 H N N 287 ERI H22 H N N 288 ERI HO3 H N N 289 ERI H31 H N N 290 ERI H32 H N N 291 ERI H33 H N N 292 ERI H4 H N N 293 ERI H41 H N N 294 ERI H42 H N N 295 ERI H43 H N N 296 ERI H5 H N N 297 ERI H61 H N N 298 ERI H62 H N N 299 ERI H63 H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1GL O1 C1 sing N N 1 1GL O1 HO1 sing N N 2 1GL C1 C2 sing N N 3 1GL C1 O5 sing N N 4 1GL C1 H1 sing N N 5 1GL C2 C3 sing N N 6 1GL C2 H2 sing N N 7 1GL C2 H22 sing N N 8 1GL C3 O3 sing N N 9 1GL C3 C4 sing N N 10 1GL C3 H3 sing N N 11 1GL O3 HO3 sing N N 12 1GL C4 O4 sing N N 13 1GL C4 C5 sing N N 14 1GL C4 H4 sing N N 15 1GL O4 CME sing N N 16 1GL CME HM41 sing N N 17 1GL CME HM42 sing N N 18 1GL CME HM43 sing N N 19 1GL C5 O5 sing N N 20 1GL C5 C6 sing N N 21 1GL C5 H5 sing N N 22 1GL C6 H61 sing N N 23 1GL C6 H62 sing N N 24 1GL C6 H63 sing N N 25 ARI O1 C1 sing N N 26 ARI O1 HO1 sing N N 27 ARI C1 C2 sing N N 28 ARI C1 O5 sing N N 29 ARI C1 H1 sing N N 30 ARI C2 C3 sing N N 31 ARI C2 H2 sing N N 32 ARI C2 H22 sing N N 33 ARI C3 C4 sing N N 34 ARI C3 H3 sing N N 35 ARI C3 H32 sing N N 36 ARI C4 O4 sing N N 37 ARI C4 C5 sing N N 38 ARI C4 H4 sing N N 39 ARI O4 CO4 sing N N 40 ARI CME CO4 sing N N 41 ARI CME H41 sing N N 42 ARI CME H42 sing N N 43 ARI CME H43 sing N N 44 ARI CO4 OC4 doub N N 45 ARI C5 O5 sing N N 46 ARI C5 C6 sing N N 47 ARI C5 H5 sing N N 48 ARI C6 H61 sing N N 49 ARI C6 H62 sing N N 50 ARI C6 H63 sing N N 51 CDR O1 C1 sing N N 52 CDR O1 HO1 sing N N 53 CDR C1 C2 sing N N 54 CDR C1 O5 sing N N 55 CDR C1 H1 sing N N 56 CDR C2 C3 sing N N 57 CDR C2 H2 sing N N 58 CDR C2 H22 sing N N 59 CDR C3 C4 sing N N 60 CDR C3 H3 sing N N 61 CDR C3 H32 sing N N 62 CDR C4 O4 sing N N 63 CDR C4 C5 sing N N 64 CDR C4 H4 sing N N 65 CDR O4 HO4 sing N N 66 CDR C5 O5 sing N N 67 CDR C5 C6 sing N N 68 CDR C5 H5 sing N N 69 CDR C6 H61 sing N N 70 CDR C6 H62 sing N N 71 CDR C6 H63 sing N N 72 CPH O1 C1 doub N N 73 CPH C9A C1 sing N N 74 CPH C1 C2 sing N N 75 CPH C2 O2 sing N N 76 CPH C2 C3 sing N N 77 CPH C2 H2 sing N N 78 CPH C3 C4 sing N N 79 CPH C3 "C1'" sing N N 80 CPH C3 H3 sing N N 81 CPH C4A C4 sing N N 82 CPH C4 H4 sing N N 83 CPH C4 H4A sing N N 84 CPH C6 C5 doub Y N 85 CPH C5 C5A sing Y N 86 CPH C5 H5 sing N N 87 CPH C7 C6 sing Y N 88 CPH O6 C6 sing N N 89 CPH CC7 C7 sing N N 90 CPH C7 C8 doub Y N 91 CPH O8 C8 sing N N 92 CPH C8 C8A sing Y N 93 CPH O8 HO8 sing N N 94 CPH O9 C9 sing N N 95 CPH C8A C9 doub Y N 96 CPH C9 C9A sing Y N 97 CPH O9 HO9 sing N N 98 CPH "C2'" "C1'" sing N N 99 CPH "C1'" "O1'" sing N N 100 CPH "C1'" "H1'" sing N N 101 CPH "O1'" CME sing N N 102 CPH C5A C10 doub Y N 103 CPH C10 C4A sing Y N 104 CPH C10 H10 sing N N 105 CPH "O2'" "C2'" doub N N 106 CPH "C2'" "C3'" sing N N 107 CPH "O3'" "C3'" sing N N 108 CPH "C3'" "C4'" sing N N 109 CPH "C3'" "H3'" sing N N 110 CPH "O3'" "HO3'" sing N N 111 CPH "O4'" "C4'" sing N N 112 CPH "C4'" "C5'" sing N N 113 CPH "C4'" "H4'" sing N N 114 CPH "O4'" "HO4'" sing N N 115 CPH C9A C4A doub Y N 116 CPH "C5'" "H5'" sing N N 117 CPH "C5'" "H5'A" sing N N 118 CPH "C5'" "H5'B" sing N N 119 CPH C8A C5A sing Y N 120 CPH CC7 HC7 sing N N 121 CPH CC7 HC7A sing N N 122 CPH CC7 HC7B sing N N 123 CPH O6 HO6 sing N N 124 CPH O2 HO2 sing N N 125 CPH CME HME sing N N 126 CPH CME HMEA sing N N 127 CPH CME HMEB sing N N 128 DA OP3 P sing N N 129 DA OP3 HOP3 sing N N 130 DA P OP1 doub N N 131 DA P OP2 sing N N 132 DA P "O5'" sing N N 133 DA OP2 HOP2 sing N N 134 DA "O5'" "C5'" sing N N 135 DA "C5'" "C4'" sing N N 136 DA "C5'" "H5'" sing N N 137 DA "C5'" "H5''" sing N N 138 DA "C4'" "O4'" sing N N 139 DA "C4'" "C3'" sing N N 140 DA "C4'" "H4'" sing N N 141 DA "O4'" "C1'" sing N N 142 DA "C3'" "O3'" sing N N 143 DA "C3'" "C2'" sing N N 144 DA "C3'" "H3'" sing N N 145 DA "O3'" "HO3'" sing N N 146 DA "C2'" "C1'" sing N N 147 DA "C2'" "H2'" sing N N 148 DA "C2'" "H2''" sing N N 149 DA "C1'" N9 sing N N 150 DA "C1'" "H1'" sing N N 151 DA N9 C8 sing Y N 152 DA N9 C4 sing Y N 153 DA C8 N7 doub Y N 154 DA C8 H8 sing N N 155 DA N7 C5 sing Y N 156 DA C5 C6 sing Y N 157 DA C5 C4 doub Y N 158 DA C6 N6 sing N N 159 DA C6 N1 doub Y N 160 DA N6 H61 sing N N 161 DA N6 H62 sing N N 162 DA N1 C2 sing Y N 163 DA C2 N3 doub Y N 164 DA C2 H2 sing N N 165 DA N3 C4 sing Y N 166 DC OP3 P sing N N 167 DC OP3 HOP3 sing N N 168 DC P OP1 doub N N 169 DC P OP2 sing N N 170 DC P "O5'" sing N N 171 DC OP2 HOP2 sing N N 172 DC "O5'" "C5'" sing N N 173 DC "C5'" "C4'" sing N N 174 DC "C5'" "H5'" sing N N 175 DC "C5'" "H5''" sing N N 176 DC "C4'" "O4'" sing N N 177 DC "C4'" "C3'" sing N N 178 DC "C4'" "H4'" sing N N 179 DC "O4'" "C1'" sing N N 180 DC "C3'" "O3'" sing N N 181 DC "C3'" "C2'" sing N N 182 DC "C3'" "H3'" sing N N 183 DC "O3'" "HO3'" sing N N 184 DC "C2'" "C1'" sing N N 185 DC "C2'" "H2'" sing N N 186 DC "C2'" "H2''" sing N N 187 DC "C1'" N1 sing N N 188 DC "C1'" "H1'" sing N N 189 DC N1 C2 sing N N 190 DC N1 C6 sing N N 191 DC C2 O2 doub N N 192 DC C2 N3 sing N N 193 DC N3 C4 doub N N 194 DC C4 N4 sing N N 195 DC C4 C5 sing N N 196 DC N4 H41 sing N N 197 DC N4 H42 sing N N 198 DC C5 C6 doub N N 199 DC C5 H5 sing N N 200 DC C6 H6 sing N N 201 DG OP3 P sing N N 202 DG OP3 HOP3 sing N N 203 DG P OP1 doub N N 204 DG P OP2 sing N N 205 DG P "O5'" sing N N 206 DG OP2 HOP2 sing N N 207 DG "O5'" "C5'" sing N N 208 DG "C5'" "C4'" sing N N 209 DG "C5'" "H5'" sing N N 210 DG "C5'" "H5''" sing N N 211 DG "C4'" "O4'" sing N N 212 DG "C4'" "C3'" sing N N 213 DG "C4'" "H4'" sing N N 214 DG "O4'" "C1'" sing N N 215 DG "C3'" "O3'" sing N N 216 DG "C3'" "C2'" sing N N 217 DG "C3'" "H3'" sing N N 218 DG "O3'" "HO3'" sing N N 219 DG "C2'" "C1'" sing N N 220 DG "C2'" "H2'" sing N N 221 DG "C2'" "H2''" sing N N 222 DG "C1'" N9 sing N N 223 DG "C1'" "H1'" sing N N 224 DG N9 C8 sing Y N 225 DG N9 C4 sing Y N 226 DG C8 N7 doub Y N 227 DG C8 H8 sing N N 228 DG N7 C5 sing Y N 229 DG C5 C6 sing N N 230 DG C5 C4 doub Y N 231 DG C6 O6 doub N N 232 DG C6 N1 sing N N 233 DG N1 C2 sing N N 234 DG N1 H1 sing N N 235 DG C2 N2 sing N N 236 DG C2 N3 doub N N 237 DG N2 H21 sing N N 238 DG N2 H22 sing N N 239 DG N3 C4 sing N N 240 DT OP3 P sing N N 241 DT OP3 HOP3 sing N N 242 DT P OP1 doub N N 243 DT P OP2 sing N N 244 DT P "O5'" sing N N 245 DT OP2 HOP2 sing N N 246 DT "O5'" "C5'" sing N N 247 DT "C5'" "C4'" sing N N 248 DT "C5'" "H5'" sing N N 249 DT "C5'" "H5''" sing N N 250 DT "C4'" "O4'" sing N N 251 DT "C4'" "C3'" sing N N 252 DT "C4'" "H4'" sing N N 253 DT "O4'" "C1'" sing N N 254 DT "C3'" "O3'" sing N N 255 DT "C3'" "C2'" sing N N 256 DT "C3'" "H3'" sing N N 257 DT "O3'" "HO3'" sing N N 258 DT "C2'" "C1'" sing N N 259 DT "C2'" "H2'" sing N N 260 DT "C2'" "H2''" sing N N 261 DT "C1'" N1 sing N N 262 DT "C1'" "H1'" sing N N 263 DT N1 C2 sing N N 264 DT N1 C6 sing N N 265 DT C2 O2 doub N N 266 DT C2 N3 sing N N 267 DT N3 C4 sing N N 268 DT N3 H3 sing N N 269 DT C4 O4 doub N N 270 DT C4 C5 sing N N 271 DT C5 C7 sing N N 272 DT C5 C6 doub N N 273 DT C7 H71 sing N N 274 DT C7 H72 sing N N 275 DT C7 H73 sing N N 276 DT C6 H6 sing N N 277 ERI O1 C1 sing N N 278 ERI O1 HO1 sing N N 279 ERI C1 C2 sing N N 280 ERI C1 O5 sing N N 281 ERI C1 H1 sing N N 282 ERI C2 C3 sing N N 283 ERI C2 H21 sing N N 284 ERI C2 H22 sing N N 285 ERI C3 O3 sing N N 286 ERI C3 CC3 sing N N 287 ERI C3 C4 sing N N 288 ERI O3 HO3 sing N N 289 ERI CC3 H31 sing N N 290 ERI CC3 H32 sing N N 291 ERI CC3 H33 sing N N 292 ERI C4 O4 sing N N 293 ERI C4 C5 sing N N 294 ERI C4 H4 sing N N 295 ERI O4 CO4 sing N N 296 ERI CME CO4 sing N N 297 ERI CME H41 sing N N 298 ERI CME H42 sing N N 299 ERI CME H43 sing N N 300 ERI CO4 OC4 doub N N 301 ERI C5 O5 sing N N 302 ERI C5 C6 sing N N 303 ERI C5 H5 sing N N 304 ERI C6 H61 sing N N 305 ERI C6 H62 sing N N 306 ERI C6 H63 sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 # _ndb_struct_conf_na.entry_id 5YZE _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 3 1_555 B DG 10 1_555 0.046 -0.133 0.251 2.448 -12.458 -1.906 1 A_DC3:DG21_B A 3 ? B 21 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.141 -0.167 -0.020 -1.984 -11.822 1.051 2 A_DG4:DC20_B A 4 ? B 20 ? 19 1 1 A DG 7 1_555 B DC 8 1_555 -0.466 -0.182 0.196 1.148 -10.009 0.496 3 A_DG7:DC19_B A 7 ? B 19 ? 19 1 1 A DC 8 1_555 B DG 7 1_555 0.401 -0.219 0.242 -1.407 -9.769 0.062 4 A_DC8:DG18_B A 8 ? B 18 ? 19 1 1 A DC 9 1_555 B DG 4 1_555 0.066 -0.224 -0.049 2.249 -13.059 0.484 5 A_DC9:DG15_B A 9 ? B 15 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.322 -0.062 0.241 -5.685 -17.482 2.767 6 A_DG10:DC14_B A 10 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 0.859 0.252 3.532 2.966 4.702 37.579 -0.270 -0.906 3.592 7.251 -4.573 37.974 1 AA_DC3DG4:DC20DG21_BB A 3 ? B 21 ? A 4 ? B 20 ? 1 A DG 4 1_555 B DC 9 1_555 A DG 7 1_555 B DC 8 1_555 2.185 -1.945 3.125 -0.944 7.712 18.580 -8.487 -6.610 2.047 22.646 2.772 20.126 2 AA_DG4DG7:DC19DC20_BB A 4 ? B 20 ? A 7 ? B 19 ? 1 A DG 7 1_555 B DC 8 1_555 A DC 8 1_555 B DG 7 1_555 0.019 -2.151 3.288 -0.029 0.200 37.542 -3.369 -0.033 3.277 0.311 0.045 37.542 3 AA_DG7DC8:DG18DC19_BB A 7 ? B 19 ? A 8 ? B 18 ? 1 A DC 8 1_555 B DG 7 1_555 A DC 9 1_555 B DG 4 1_555 -2.166 -1.977 3.103 1.222 7.929 18.455 -8.608 6.657 1.947 23.345 -3.599 20.109 4 AA_DC8DC9:DG15DG18_BB A 8 ? B 18 ? A 9 ? B 15 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.787 0.283 3.568 -2.059 6.760 36.087 -0.570 0.938 3.599 10.785 3.284 36.750 5 AA_DC9DG10:DC14DG15_BB A 9 ? B 15 ? A 10 ? B 14 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 CDR 1 n 2 CDR 2 n 2 ERI 3 n 3 ARI 1 n 3 1GL 2 n # _space_group.name_H-M_alt 'P 32 1 2' _space_group.name_Hall 'P 32 2 (x,y,z+1/6)' _space_group.IT_number 153 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 5YZE _atom_sites.fract_transf_matrix[1][1] 0.021551 _atom_sites.fract_transf_matrix[1][2] 0.012443 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024885 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013546 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CO ? ? 21.85313 5.04979 2.45200 36.11361 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 1.42069 35.72801 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_