data_5AHZ # _entry.id 5AHZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5AHZ pdb_00005ahz 10.2210/pdb5ahz/pdb PDBE EBI-63004 ? ? WWPDB D_1290063004 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-22 2 'Structure model' 1 1 2015-05-13 3 'Structure model' 1 2 2015-06-17 4 'Structure model' 1 3 2016-12-14 5 'Structure model' 1 4 2019-05-08 6 'Structure model' 1 5 2019-09-25 7 'Structure model' 1 6 2020-07-29 8 'Structure model' 1 7 2024-01-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 7 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Experimental preparation' 7 5 'Structure model' Other 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Experimental preparation' 10 6 'Structure model' Other 11 7 'Structure model' 'Data collection' 12 7 'Structure model' 'Derived calculations' 13 7 'Structure model' 'Structure summary' 14 8 'Structure model' 'Data collection' 15 8 'Structure model' 'Database references' 16 8 'Structure model' 'Refinement description' 17 8 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' exptl_crystal_grow 2 5 'Structure model' pdbx_database_proc 3 5 'Structure model' pdbx_database_status 4 5 'Structure model' struct_conn 5 6 'Structure model' exptl_crystal_grow 6 6 'Structure model' pdbx_database_status 7 7 'Structure model' chem_comp 8 7 'Structure model' entity 9 7 'Structure model' pdbx_chem_comp_identifier 10 7 'Structure model' pdbx_entity_nonpoly 11 7 'Structure model' struct_site 12 7 'Structure model' struct_site_gen 13 8 'Structure model' chem_comp 14 8 'Structure model' chem_comp_atom 15 8 'Structure model' chem_comp_bond 16 8 'Structure model' database_2 17 8 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_exptl_crystal_grow.temp' 2 5 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_exptl_crystal_grow.method' 5 6 'Structure model' '_pdbx_database_status.status_code_sf' 6 7 'Structure model' '_chem_comp.mon_nstd_flag' 7 7 'Structure model' '_chem_comp.name' 8 7 'Structure model' '_chem_comp.type' 9 7 'Structure model' '_entity.pdbx_description' 10 7 'Structure model' '_pdbx_entity_nonpoly.name' 11 8 'Structure model' '_chem_comp.pdbx_synonyms' 12 8 'Structure model' '_database_2.pdbx_DOI' 13 8 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5AHZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2015-02-11 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 5AHY _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'HALORHODOPSIN FROM HALOBACTERIUM SALINARUM IN A NEW RHOMBOHEDRAL CRYSTAL FORM' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schreiner, M.' 1 'Schlesinger, R.' 2 'Heberle, J.' 3 'Niemann, H.H.' 4 # _citation.id primary _citation.title 'Structure of Halorhodopsin from Halobacterium Salinarum in a New Crystal Form that Imposes Little Restraint on the E-F Loop.' _citation.journal_abbrev J.Struct.Biol. _citation.journal_volume 190 _citation.page_first 373 _citation.page_last ? _citation.year 2015 _citation.journal_id_ASTM JSBIEM _citation.country US _citation.journal_id_ISSN 1047-8477 _citation.journal_id_CSD 0803 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25916754 _citation.pdbx_database_id_DOI 10.1016/J.JSB.2015.04.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schreiner, M.' 1 ? primary 'Schlesinger, R.' 2 ? primary 'Heberle, J.' 3 ? primary 'Niemann, H.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man HALORHODOPSIN 27945.709 1 ? ? 'RESIDUES 20-274' 'IMINE BOND (SCHIFF BASE) BETWEEN NZ OF LYS242 AND C15 OF THE RETINAL LIGAND' 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? 3 non-polymer syn 'BROMIDE ION' 79.904 2 ? ? ? ? 4 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 1 ? ? ? ? 5 water nat water 18.015 24 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAAVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAG EMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLSAL VTDWAASASSAGTAEIFDTLRVLTVVLWLGYPIVWAVGVEGLALVQSVGVTSWAYSVLDVFAKYVFAFILLRWVANNERT VAVAGQTLGTMSSDDHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;AAAVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAG EMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLSAL VTDWAASASSAGTAEIFDTLRVLTVVLWLGYPIVWAVGVEGLALVQSVGVTSWAYSVLDVFAKYVFAFILLRWVANNERT VAVAGQTLGTMSSDDHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINAL RET 3 'BROMIDE ION' BR 4 'octyl beta-D-glucopyranoside' BOG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 ALA n 1 4 VAL n 1 5 ARG n 1 6 GLU n 1 7 ASN n 1 8 ALA n 1 9 LEU n 1 10 LEU n 1 11 SER n 1 12 SER n 1 13 SER n 1 14 LEU n 1 15 TRP n 1 16 VAL n 1 17 ASN n 1 18 VAL n 1 19 ALA n 1 20 LEU n 1 21 ALA n 1 22 GLY n 1 23 ILE n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 VAL n 1 28 PHE n 1 29 VAL n 1 30 TYR n 1 31 MET n 1 32 GLY n 1 33 ARG n 1 34 THR n 1 35 ILE n 1 36 ARG n 1 37 PRO n 1 38 GLY n 1 39 ARG n 1 40 PRO n 1 41 ARG n 1 42 LEU n 1 43 ILE n 1 44 TRP n 1 45 GLY n 1 46 ALA n 1 47 THR n 1 48 LEU n 1 49 MET n 1 50 ILE n 1 51 PRO n 1 52 LEU n 1 53 VAL n 1 54 SER n 1 55 ILE n 1 56 SER n 1 57 SER n 1 58 TYR n 1 59 LEU n 1 60 GLY n 1 61 LEU n 1 62 LEU n 1 63 SER n 1 64 GLY n 1 65 LEU n 1 66 THR n 1 67 VAL n 1 68 GLY n 1 69 MET n 1 70 ILE n 1 71 GLU n 1 72 MET n 1 73 PRO n 1 74 ALA n 1 75 GLY n 1 76 HIS n 1 77 ALA n 1 78 LEU n 1 79 ALA n 1 80 GLY n 1 81 GLU n 1 82 MET n 1 83 VAL n 1 84 ARG n 1 85 SER n 1 86 GLN n 1 87 TRP n 1 88 GLY n 1 89 ARG n 1 90 TYR n 1 91 LEU n 1 92 THR n 1 93 TRP n 1 94 ALA n 1 95 LEU n 1 96 SER n 1 97 THR n 1 98 PRO n 1 99 MET n 1 100 ILE n 1 101 LEU n 1 102 LEU n 1 103 ALA n 1 104 LEU n 1 105 GLY n 1 106 LEU n 1 107 LEU n 1 108 ALA n 1 109 ASP n 1 110 VAL n 1 111 ASP n 1 112 LEU n 1 113 GLY n 1 114 SER n 1 115 LEU n 1 116 PHE n 1 117 THR n 1 118 VAL n 1 119 ILE n 1 120 ALA n 1 121 ALA n 1 122 ASP n 1 123 ILE n 1 124 GLY n 1 125 MET n 1 126 CYS n 1 127 VAL n 1 128 THR n 1 129 GLY n 1 130 LEU n 1 131 ALA n 1 132 ALA n 1 133 ALA n 1 134 MET n 1 135 THR n 1 136 THR n 1 137 SER n 1 138 ALA n 1 139 LEU n 1 140 LEU n 1 141 PHE n 1 142 ARG n 1 143 TRP n 1 144 ALA n 1 145 PHE n 1 146 TYR n 1 147 ALA n 1 148 ILE n 1 149 SER n 1 150 CYS n 1 151 ALA n 1 152 PHE n 1 153 PHE n 1 154 VAL n 1 155 VAL n 1 156 VAL n 1 157 LEU n 1 158 SER n 1 159 ALA n 1 160 LEU n 1 161 VAL n 1 162 THR n 1 163 ASP n 1 164 TRP n 1 165 ALA n 1 166 ALA n 1 167 SER n 1 168 ALA n 1 169 SER n 1 170 SER n 1 171 ALA n 1 172 GLY n 1 173 THR n 1 174 ALA n 1 175 GLU n 1 176 ILE n 1 177 PHE n 1 178 ASP n 1 179 THR n 1 180 LEU n 1 181 ARG n 1 182 VAL n 1 183 LEU n 1 184 THR n 1 185 VAL n 1 186 VAL n 1 187 LEU n 1 188 TRP n 1 189 LEU n 1 190 GLY n 1 191 TYR n 1 192 PRO n 1 193 ILE n 1 194 VAL n 1 195 TRP n 1 196 ALA n 1 197 VAL n 1 198 GLY n 1 199 VAL n 1 200 GLU n 1 201 GLY n 1 202 LEU n 1 203 ALA n 1 204 LEU n 1 205 VAL n 1 206 GLN n 1 207 SER n 1 208 VAL n 1 209 GLY n 1 210 VAL n 1 211 THR n 1 212 SER n 1 213 TRP n 1 214 ALA n 1 215 TYR n 1 216 SER n 1 217 VAL n 1 218 LEU n 1 219 ASP n 1 220 VAL n 1 221 PHE n 1 222 ALA n 1 223 LYS n 1 224 TYR n 1 225 VAL n 1 226 PHE n 1 227 ALA n 1 228 PHE n 1 229 ILE n 1 230 LEU n 1 231 LEU n 1 232 ARG n 1 233 TRP n 1 234 VAL n 1 235 ALA n 1 236 ASN n 1 237 ASN n 1 238 GLU n 1 239 ARG n 1 240 THR n 1 241 VAL n 1 242 ALA n 1 243 VAL n 1 244 ALA n 1 245 GLY n 1 246 GLN n 1 247 THR n 1 248 LEU n 1 249 GLY n 1 250 THR n 1 251 MET n 1 252 SER n 1 253 SER n 1 254 ASP n 1 255 ASP n 1 256 HIS n 1 257 HIS n 1 258 HIS n 1 259 HIS n 1 260 HIS n 1 261 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain L33 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HALOBACTERIUM SALINARUM' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2242 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'HALOBACTERIUM SALINARUM' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 2242 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain L33 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' 'Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside' 'C14 H28 O6' 292.369 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 20 20 ALA ALA A . n A 1 2 ALA 2 21 21 ALA ALA A . n A 1 3 ALA 3 22 22 ALA ALA A . n A 1 4 VAL 4 23 23 VAL VAL A . n A 1 5 ARG 5 24 24 ARG ARG A . n A 1 6 GLU 6 25 25 GLU GLU A . n A 1 7 ASN 7 26 26 ASN ASN A . n A 1 8 ALA 8 27 27 ALA ALA A . n A 1 9 LEU 9 28 28 LEU LEU A . n A 1 10 LEU 10 29 29 LEU LEU A . n A 1 11 SER 11 30 30 SER SER A . n A 1 12 SER 12 31 31 SER SER A . n A 1 13 SER 13 32 32 SER SER A . n A 1 14 LEU 14 33 33 LEU LEU A . n A 1 15 TRP 15 34 34 TRP TRP A . n A 1 16 VAL 16 35 35 VAL VAL A . n A 1 17 ASN 17 36 36 ASN ASN A . n A 1 18 VAL 18 37 37 VAL VAL A . n A 1 19 ALA 19 38 38 ALA ALA A . n A 1 20 LEU 20 39 39 LEU LEU A . n A 1 21 ALA 21 40 40 ALA ALA A . n A 1 22 GLY 22 41 41 GLY GLY A . n A 1 23 ILE 23 42 42 ILE ILE A . n A 1 24 ALA 24 43 43 ALA ALA A . n A 1 25 ILE 25 44 44 ILE ILE A . n A 1 26 LEU 26 45 45 LEU LEU A . n A 1 27 VAL 27 46 46 VAL VAL A . n A 1 28 PHE 28 47 47 PHE PHE A . n A 1 29 VAL 29 48 48 VAL VAL A . n A 1 30 TYR 30 49 49 TYR TYR A . n A 1 31 MET 31 50 50 MET MET A . n A 1 32 GLY 32 51 51 GLY GLY A . n A 1 33 ARG 33 52 52 ARG ARG A . n A 1 34 THR 34 53 53 THR THR A . n A 1 35 ILE 35 54 54 ILE ILE A . n A 1 36 ARG 36 55 55 ARG ARG A . n A 1 37 PRO 37 56 56 PRO PRO A . n A 1 38 GLY 38 57 57 GLY GLY A . n A 1 39 ARG 39 58 58 ARG ARG A . n A 1 40 PRO 40 59 59 PRO PRO A . n A 1 41 ARG 41 60 60 ARG ARG A . n A 1 42 LEU 42 61 61 LEU LEU A . n A 1 43 ILE 43 62 62 ILE ILE A . n A 1 44 TRP 44 63 63 TRP TRP A . n A 1 45 GLY 45 64 64 GLY GLY A . n A 1 46 ALA 46 65 65 ALA ALA A . n A 1 47 THR 47 66 66 THR THR A . n A 1 48 LEU 48 67 67 LEU LEU A . n A 1 49 MET 49 68 68 MET MET A . n A 1 50 ILE 50 69 69 ILE ILE A . n A 1 51 PRO 51 70 70 PRO PRO A . n A 1 52 LEU 52 71 71 LEU LEU A . n A 1 53 VAL 53 72 72 VAL VAL A . n A 1 54 SER 54 73 73 SER SER A . n A 1 55 ILE 55 74 74 ILE ILE A . n A 1 56 SER 56 75 75 SER SER A . n A 1 57 SER 57 76 76 SER SER A . n A 1 58 TYR 58 77 77 TYR TYR A . n A 1 59 LEU 59 78 78 LEU LEU A . n A 1 60 GLY 60 79 79 GLY GLY A . n A 1 61 LEU 61 80 80 LEU LEU A . n A 1 62 LEU 62 81 81 LEU LEU A . n A 1 63 SER 63 82 82 SER SER A . n A 1 64 GLY 64 83 83 GLY GLY A . n A 1 65 LEU 65 84 84 LEU LEU A . n A 1 66 THR 66 85 85 THR THR A . n A 1 67 VAL 67 86 86 VAL VAL A . n A 1 68 GLY 68 87 87 GLY GLY A . n A 1 69 MET 69 88 88 MET MET A . n A 1 70 ILE 70 89 89 ILE ILE A . n A 1 71 GLU 71 90 90 GLU GLU A . n A 1 72 MET 72 91 91 MET MET A . n A 1 73 PRO 73 92 92 PRO PRO A . n A 1 74 ALA 74 93 93 ALA ALA A . n A 1 75 GLY 75 94 94 GLY GLY A . n A 1 76 HIS 76 95 95 HIS HIS A . n A 1 77 ALA 77 96 96 ALA ALA A . n A 1 78 LEU 78 97 97 LEU LEU A . n A 1 79 ALA 79 98 98 ALA ALA A . n A 1 80 GLY 80 99 99 GLY GLY A . n A 1 81 GLU 81 100 100 GLU GLU A . n A 1 82 MET 82 101 101 MET MET A . n A 1 83 VAL 83 102 102 VAL VAL A . n A 1 84 ARG 84 103 103 ARG ARG A . n A 1 85 SER 85 104 104 SER SER A . n A 1 86 GLN 86 105 105 GLN GLN A . n A 1 87 TRP 87 106 106 TRP TRP A . n A 1 88 GLY 88 107 107 GLY GLY A . n A 1 89 ARG 89 108 108 ARG ARG A . n A 1 90 TYR 90 109 109 TYR TYR A . n A 1 91 LEU 91 110 110 LEU LEU A . n A 1 92 THR 92 111 111 THR THR A . n A 1 93 TRP 93 112 112 TRP TRP A . n A 1 94 ALA 94 113 113 ALA ALA A . n A 1 95 LEU 95 114 114 LEU LEU A . n A 1 96 SER 96 115 115 SER SER A . n A 1 97 THR 97 116 116 THR THR A . n A 1 98 PRO 98 117 117 PRO PRO A . n A 1 99 MET 99 118 118 MET MET A . n A 1 100 ILE 100 119 119 ILE ILE A . n A 1 101 LEU 101 120 120 LEU LEU A . n A 1 102 LEU 102 121 121 LEU LEU A . n A 1 103 ALA 103 122 122 ALA ALA A . n A 1 104 LEU 104 123 123 LEU LEU A . n A 1 105 GLY 105 124 124 GLY GLY A . n A 1 106 LEU 106 125 125 LEU LEU A . n A 1 107 LEU 107 126 126 LEU LEU A . n A 1 108 ALA 108 127 127 ALA ALA A . n A 1 109 ASP 109 128 128 ASP ASP A . n A 1 110 VAL 110 129 129 VAL VAL A . n A 1 111 ASP 111 130 130 ASP ASP A . n A 1 112 LEU 112 131 131 LEU LEU A . n A 1 113 GLY 113 132 132 GLY GLY A . n A 1 114 SER 114 133 133 SER SER A . n A 1 115 LEU 115 134 134 LEU LEU A . n A 1 116 PHE 116 135 135 PHE PHE A . n A 1 117 THR 117 136 136 THR THR A . n A 1 118 VAL 118 137 137 VAL VAL A . n A 1 119 ILE 119 138 138 ILE ILE A . n A 1 120 ALA 120 139 139 ALA ALA A . n A 1 121 ALA 121 140 140 ALA ALA A . n A 1 122 ASP 122 141 141 ASP ASP A . n A 1 123 ILE 123 142 142 ILE ILE A . n A 1 124 GLY 124 143 143 GLY GLY A . n A 1 125 MET 125 144 144 MET MET A . n A 1 126 CYS 126 145 145 CYS CYS A . n A 1 127 VAL 127 146 146 VAL VAL A . n A 1 128 THR 128 147 147 THR THR A . n A 1 129 GLY 129 148 148 GLY GLY A . n A 1 130 LEU 130 149 149 LEU LEU A . n A 1 131 ALA 131 150 150 ALA ALA A . n A 1 132 ALA 132 151 151 ALA ALA A . n A 1 133 ALA 133 152 152 ALA ALA A . n A 1 134 MET 134 153 153 MET MET A . n A 1 135 THR 135 154 154 THR THR A . n A 1 136 THR 136 155 155 THR THR A . n A 1 137 SER 137 156 156 SER SER A . n A 1 138 ALA 138 157 157 ALA ALA A . n A 1 139 LEU 139 158 158 LEU LEU A . n A 1 140 LEU 140 159 159 LEU LEU A . n A 1 141 PHE 141 160 160 PHE PHE A . n A 1 142 ARG 142 161 161 ARG ARG A . n A 1 143 TRP 143 162 162 TRP TRP A . n A 1 144 ALA 144 163 163 ALA ALA A . n A 1 145 PHE 145 164 164 PHE PHE A . n A 1 146 TYR 146 165 165 TYR TYR A . n A 1 147 ALA 147 166 166 ALA ALA A . n A 1 148 ILE 148 167 167 ILE ILE A . n A 1 149 SER 149 168 168 SER SER A . n A 1 150 CYS 150 169 169 CYS CYS A . n A 1 151 ALA 151 170 170 ALA ALA A . n A 1 152 PHE 152 171 171 PHE PHE A . n A 1 153 PHE 153 172 172 PHE PHE A . n A 1 154 VAL 154 173 173 VAL VAL A . n A 1 155 VAL 155 174 174 VAL VAL A . n A 1 156 VAL 156 175 175 VAL VAL A . n A 1 157 LEU 157 176 176 LEU LEU A . n A 1 158 SER 158 177 177 SER SER A . n A 1 159 ALA 159 178 178 ALA ALA A . n A 1 160 LEU 160 179 179 LEU LEU A . n A 1 161 VAL 161 180 180 VAL VAL A . n A 1 162 THR 162 181 181 THR THR A . n A 1 163 ASP 163 182 182 ASP ASP A . n A 1 164 TRP 164 183 183 TRP TRP A . n A 1 165 ALA 165 184 184 ALA ALA A . n A 1 166 ALA 166 185 185 ALA ALA A . n A 1 167 SER 167 186 186 SER SER A . n A 1 168 ALA 168 187 187 ALA ALA A . n A 1 169 SER 169 188 188 SER SER A . n A 1 170 SER 170 189 189 SER SER A . n A 1 171 ALA 171 190 190 ALA ALA A . n A 1 172 GLY 172 191 191 GLY GLY A . n A 1 173 THR 173 192 192 THR THR A . n A 1 174 ALA 174 193 193 ALA ALA A . n A 1 175 GLU 175 194 194 GLU GLU A . n A 1 176 ILE 176 195 195 ILE ILE A . n A 1 177 PHE 177 196 196 PHE PHE A . n A 1 178 ASP 178 197 197 ASP ASP A . n A 1 179 THR 179 198 198 THR THR A . n A 1 180 LEU 180 199 199 LEU LEU A . n A 1 181 ARG 181 200 200 ARG ARG A . n A 1 182 VAL 182 201 201 VAL VAL A . n A 1 183 LEU 183 202 202 LEU LEU A . n A 1 184 THR 184 203 203 THR THR A . n A 1 185 VAL 185 204 204 VAL VAL A . n A 1 186 VAL 186 205 205 VAL VAL A . n A 1 187 LEU 187 206 206 LEU LEU A . n A 1 188 TRP 188 207 207 TRP TRP A . n A 1 189 LEU 189 208 208 LEU LEU A . n A 1 190 GLY 190 209 209 GLY GLY A . n A 1 191 TYR 191 210 210 TYR TYR A . n A 1 192 PRO 192 211 211 PRO PRO A . n A 1 193 ILE 193 212 212 ILE ILE A . n A 1 194 VAL 194 213 213 VAL VAL A . n A 1 195 TRP 195 214 214 TRP TRP A . n A 1 196 ALA 196 215 215 ALA ALA A . n A 1 197 VAL 197 216 216 VAL VAL A . n A 1 198 GLY 198 217 217 GLY GLY A . n A 1 199 VAL 199 218 218 VAL VAL A . n A 1 200 GLU 200 219 219 GLU GLU A . n A 1 201 GLY 201 220 220 GLY GLY A . n A 1 202 LEU 202 221 221 LEU LEU A . n A 1 203 ALA 203 222 222 ALA ALA A . n A 1 204 LEU 204 223 223 LEU LEU A . n A 1 205 VAL 205 224 224 VAL VAL A . n A 1 206 GLN 206 225 225 GLN GLN A . n A 1 207 SER 207 226 226 SER SER A . n A 1 208 VAL 208 227 227 VAL VAL A . n A 1 209 GLY 209 228 228 GLY GLY A . n A 1 210 VAL 210 229 229 VAL VAL A . n A 1 211 THR 211 230 230 THR THR A . n A 1 212 SER 212 231 231 SER SER A . n A 1 213 TRP 213 232 232 TRP TRP A . n A 1 214 ALA 214 233 233 ALA ALA A . n A 1 215 TYR 215 234 234 TYR TYR A . n A 1 216 SER 216 235 235 SER SER A . n A 1 217 VAL 217 236 236 VAL VAL A . n A 1 218 LEU 218 237 237 LEU LEU A . n A 1 219 ASP 219 238 238 ASP ASP A . n A 1 220 VAL 220 239 239 VAL VAL A . n A 1 221 PHE 221 240 240 PHE PHE A . n A 1 222 ALA 222 241 241 ALA ALA A . n A 1 223 LYS 223 242 242 LYS LYS A . n A 1 224 TYR 224 243 243 TYR TYR A . n A 1 225 VAL 225 244 244 VAL VAL A . n A 1 226 PHE 226 245 245 PHE PHE A . n A 1 227 ALA 227 246 246 ALA ALA A . n A 1 228 PHE 228 247 247 PHE PHE A . n A 1 229 ILE 229 248 248 ILE ILE A . n A 1 230 LEU 230 249 249 LEU LEU A . n A 1 231 LEU 231 250 250 LEU LEU A . n A 1 232 ARG 232 251 251 ARG ARG A . n A 1 233 TRP 233 252 252 TRP TRP A . n A 1 234 VAL 234 253 253 VAL VAL A . n A 1 235 ALA 235 254 254 ALA ALA A . n A 1 236 ASN 236 255 255 ASN ASN A . n A 1 237 ASN 237 256 256 ASN ASN A . n A 1 238 GLU 238 257 257 GLU GLU A . n A 1 239 ARG 239 258 258 ARG ARG A . n A 1 240 THR 240 259 259 THR THR A . n A 1 241 VAL 241 260 260 VAL VAL A . n A 1 242 ALA 242 261 261 ALA ALA A . n A 1 243 VAL 243 262 262 VAL VAL A . n A 1 244 ALA 244 263 ? ? ? A . n A 1 245 GLY 245 264 ? ? ? A . n A 1 246 GLN 246 265 ? ? ? A . n A 1 247 THR 247 266 ? ? ? A . n A 1 248 LEU 248 267 ? ? ? A . n A 1 249 GLY 249 268 ? ? ? A . n A 1 250 THR 250 269 ? ? ? A . n A 1 251 MET 251 270 ? ? ? A . n A 1 252 SER 252 271 ? ? ? A . n A 1 253 SER 253 272 ? ? ? A . n A 1 254 ASP 254 273 ? ? ? A . n A 1 255 ASP 255 274 ? ? ? A . n A 1 256 HIS 256 275 ? ? ? A . n A 1 257 HIS 257 276 ? ? ? A . n A 1 258 HIS 258 277 ? ? ? A . n A 1 259 HIS 259 278 ? ? ? A . n A 1 260 HIS 260 279 ? ? ? A . n A 1 261 HIS 261 280 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET 1 900 900 RET RET A . C 3 BR 1 1263 1263 BR BR A . D 3 BR 1 1264 1264 BR BR A . E 4 BOG 1 1265 1265 BOG BOG A . F 5 HOH 1 2001 2001 HOH HOH A . F 5 HOH 2 2002 2002 HOH HOH A . F 5 HOH 3 2003 2003 HOH HOH A . F 5 HOH 4 2004 2004 HOH HOH A . F 5 HOH 5 2005 2005 HOH HOH A . F 5 HOH 6 2006 2006 HOH HOH A . F 5 HOH 7 2007 2007 HOH HOH A . F 5 HOH 8 2008 2008 HOH HOH A . F 5 HOH 9 2009 2009 HOH HOH A . F 5 HOH 10 2010 2010 HOH HOH A . F 5 HOH 11 2011 2011 HOH HOH A . F 5 HOH 12 2012 2012 HOH HOH A . F 5 HOH 13 2013 2013 HOH HOH A . F 5 HOH 14 2014 2014 HOH HOH A . F 5 HOH 15 2015 2015 HOH HOH A . F 5 HOH 16 2016 2016 HOH HOH A . F 5 HOH 17 2017 2017 HOH HOH A . F 5 HOH 18 2018 2018 HOH HOH A . F 5 HOH 19 2019 2019 HOH HOH A . F 5 HOH 20 2020 2020 HOH HOH A . F 5 HOH 21 2021 2021 HOH HOH A . F 5 HOH 22 2022 2022 HOH HOH A . F 5 HOH 23 2023 2023 HOH HOH A . F 5 HOH 24 2024 2024 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE)' ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XSCALE 'data scaling' . ? 3 ? ? ? ? PHENIX phasing . ? 4 ? ? ? ? # _cell.entry_id 5AHZ _cell.length_a 104.040 _cell.length_b 104.040 _cell.length_c 138.310 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AHZ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # _exptl.entry_id 5AHZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_percent_sol 55.82 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;RESERVOIR SOLUTION: 100 MM CITRATE PH 8, 150 MM NABR, 2.3 M (NH4)2SO4. VAPOR DIFFUSION AT 296 K WITH DROP RATIO OF 1.2 TO 0.8 UL PROTEIN TO RESERVOIR. PROTEIN CONCENTRATION 7 MG/ML. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2013-07-22 _diffrn_detector.details 'PT COATED SI MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CRYSTAL SI (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.8726 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AHZ _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.80 _reflns.d_resolution_high 2.45 _reflns.number_obs 10814 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.30 _reflns.B_iso_Wilson_estimate 40.53 _reflns.pdbx_redundancy 6.2 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.45 _reflns_shell.d_res_low 2.54 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.06 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.98 _reflns_shell.pdbx_redundancy 6.3 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AHZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10804 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.836 _refine.ls_d_res_high 2.450 _refine.ls_percent_reflns_obs 99.92 _refine.ls_R_factor_obs 0.1903 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1877 _refine.ls_R_factor_R_free 0.2398 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 528 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 41.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'RESIDUES 263-274 AS WELL AS THE C-TERMINAL HEXAHISTIDINE-TAG ARE DISORDERED' _refine.pdbx_starting_model 'ISOMORPHOUS STRUCTURE OF CHLORIDE-BOUND HALORHODOPSIN, PDB ID 5AHY' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.32 _refine.pdbx_overall_phase_error 26.80 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1829 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 1895 _refine_hist.d_res_high 2.450 _refine_hist.d_res_low 42.836 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 1923 'X-RAY DIFFRACTION' ? f_angle_d 1.152 ? ? 2636 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.564 ? ? 639 'X-RAY DIFFRACTION' ? f_chiral_restr 0.039 ? ? 329 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 313 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.4501 2.6966 2537 0.2107 100.00 0.3119 . . 123 . . . . 'X-RAY DIFFRACTION' . 2.6966 3.0867 2533 0.1905 100.00 0.2641 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.0867 3.8885 2557 0.1786 100.00 0.2390 . . 130 . . . . 'X-RAY DIFFRACTION' . 3.8885 42.8421 2649 0.1862 100.00 0.2173 . . 137 . . . . # _database_PDB_matrix.entry_id 5AHZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5AHZ _struct.title 'Bromide-bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5AHZ _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;MEMBRANE PROTEIN, TRANSPORT PROTEIN, HALOPHILIC ARCHAEA, ARCHAEAL RHODOPSIN, LIGHT DRIVEN ION PUMP, RETINAL PROTEIN, ION TRANSMEMBRANE TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BACH_HALS3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession B0R2U4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5AHZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 255 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B0R2U4 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 274 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 274 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5AHZ HIS A 256 ? UNP B0R2U4 ? ? 'expression tag' 275 1 1 5AHZ HIS A 257 ? UNP B0R2U4 ? ? 'expression tag' 276 2 1 5AHZ HIS A 258 ? UNP B0R2U4 ? ? 'expression tag' 277 3 1 5AHZ HIS A 259 ? UNP B0R2U4 ? ? 'expression tag' 278 4 1 5AHZ HIS A 260 ? UNP B0R2U4 ? ? 'expression tag' 279 5 1 5AHZ HIS A 261 ? UNP B0R2U4 ? ? 'expression tag' 280 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8650 ? 1 MORE -72.7 ? 1 'SSA (A^2)' 27950 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 2 ? GLY A 32 ? ALA A 21 GLY A 51 1 ? 31 HELX_P HELX_P2 2 ARG A 33 ? ILE A 35 ? ARG A 52 ILE A 54 5 ? 3 HELX_P HELX_P3 3 GLY A 38 ? SER A 63 ? GLY A 57 SER A 82 1 ? 26 HELX_P HELX_P4 4 GLN A 86 ? ASP A 109 ? GLN A 105 ASP A 128 1 ? 24 HELX_P HELX_P5 5 ASP A 111 ? THR A 135 ? ASP A 130 THR A 154 1 ? 25 HELX_P HELX_P6 6 ALA A 138 ? THR A 162 ? ALA A 157 THR A 181 1 ? 25 HELX_P HELX_P7 7 THR A 162 ? SER A 170 ? THR A 181 SER A 189 1 ? 9 HELX_P HELX_P8 8 THR A 173 ? GLY A 198 ? THR A 192 GLY A 217 1 ? 26 HELX_P HELX_P9 9 SER A 207 ? LYS A 223 ? SER A 226 LYS A 242 1 ? 17 HELX_P HELX_P10 10 LYS A 223 ? ASN A 237 ? LYS A 242 ASN A 256 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 223 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 242 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 900 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.358 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 68 ? GLU A 71 ? GLY A 87 GLU A 90 AA 2 MET A 82 ? SER A 85 ? MET A 101 SER A 104 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 70 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 89 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 83 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 102 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 181 ? ? -120.40 -84.24 2 1 ALA A 222 ? ? 73.56 37.50 3 1 LYS A 242 ? ? -105.08 -67.65 4 1 THR A 259 ? ? -59.41 -6.96 # _pdbx_entry_details.entry_id 5AHZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;RETINAL (RET): RETINAL IS COVALENTLY LINKED TO LYS242 BY IMINE BOND ; _pdbx_entry_details.sequence_details ;AMINO ACIDS 1-19 ARE MISSING (CLEAVED SIGNAL PEPTIDE), C- TERMINAL HEXAHISTIDIN-TAG ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 263 ? A ALA 244 2 1 Y 1 A GLY 264 ? A GLY 245 3 1 Y 1 A GLN 265 ? A GLN 246 4 1 Y 1 A THR 266 ? A THR 247 5 1 Y 1 A LEU 267 ? A LEU 248 6 1 Y 1 A GLY 268 ? A GLY 249 7 1 Y 1 A THR 269 ? A THR 250 8 1 Y 1 A MET 270 ? A MET 251 9 1 Y 1 A SER 271 ? A SER 252 10 1 Y 1 A SER 272 ? A SER 253 11 1 Y 1 A ASP 273 ? A ASP 254 12 1 Y 1 A ASP 274 ? A ASP 255 13 1 Y 1 A HIS 275 ? A HIS 256 14 1 Y 1 A HIS 276 ? A HIS 257 15 1 Y 1 A HIS 277 ? A HIS 258 16 1 Y 1 A HIS 278 ? A HIS 259 17 1 Y 1 A HIS 279 ? A HIS 260 18 1 Y 1 A HIS 280 ? A HIS 261 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BOG C1 C N R 74 BOG O1 O N N 75 BOG C2 C N R 76 BOG O2 O N N 77 BOG C3 C N S 78 BOG O3 O N N 79 BOG C4 C N S 80 BOG O4 O N N 81 BOG C5 C N R 82 BOG O5 O N N 83 BOG C6 C N N 84 BOG O6 O N N 85 BOG "C1'" C N N 86 BOG "C2'" C N N 87 BOG "C3'" C N N 88 BOG "C4'" C N N 89 BOG "C5'" C N N 90 BOG "C6'" C N N 91 BOG "C7'" C N N 92 BOG "C8'" C N N 93 BOG H1 H N N 94 BOG H2 H N N 95 BOG HO2 H N N 96 BOG H3 H N N 97 BOG HO3 H N N 98 BOG H4 H N N 99 BOG HO4 H N N 100 BOG H5 H N N 101 BOG H61 H N N 102 BOG H62 H N N 103 BOG HO6 H N N 104 BOG "H1'1" H N N 105 BOG "H1'2" H N N 106 BOG "H2'1" H N N 107 BOG "H2'2" H N N 108 BOG "H3'1" H N N 109 BOG "H3'2" H N N 110 BOG "H4'1" H N N 111 BOG "H4'2" H N N 112 BOG "H5'1" H N N 113 BOG "H5'2" H N N 114 BOG "H6'1" H N N 115 BOG "H6'2" H N N 116 BOG "H7'1" H N N 117 BOG "H7'2" H N N 118 BOG "H8'1" H N N 119 BOG "H8'2" H N N 120 BOG "H8'3" H N N 121 BR BR BR N N 122 CYS N N N N 123 CYS CA C N R 124 CYS C C N N 125 CYS O O N N 126 CYS CB C N N 127 CYS SG S N N 128 CYS OXT O N N 129 CYS H H N N 130 CYS H2 H N N 131 CYS HA H N N 132 CYS HB2 H N N 133 CYS HB3 H N N 134 CYS HG H N N 135 CYS HXT H N N 136 GLN N N N N 137 GLN CA C N S 138 GLN C C N N 139 GLN O O N N 140 GLN CB C N N 141 GLN CG C N N 142 GLN CD C N N 143 GLN OE1 O N N 144 GLN NE2 N N N 145 GLN OXT O N N 146 GLN H H N N 147 GLN H2 H N N 148 GLN HA H N N 149 GLN HB2 H N N 150 GLN HB3 H N N 151 GLN HG2 H N N 152 GLN HG3 H N N 153 GLN HE21 H N N 154 GLN HE22 H N N 155 GLN HXT H N N 156 GLU N N N N 157 GLU CA C N S 158 GLU C C N N 159 GLU O O N N 160 GLU CB C N N 161 GLU CG C N N 162 GLU CD C N N 163 GLU OE1 O N N 164 GLU OE2 O N N 165 GLU OXT O N N 166 GLU H H N N 167 GLU H2 H N N 168 GLU HA H N N 169 GLU HB2 H N N 170 GLU HB3 H N N 171 GLU HG2 H N N 172 GLU HG3 H N N 173 GLU HE2 H N N 174 GLU HXT H N N 175 GLY N N N N 176 GLY CA C N N 177 GLY C C N N 178 GLY O O N N 179 GLY OXT O N N 180 GLY H H N N 181 GLY H2 H N N 182 GLY HA2 H N N 183 GLY HA3 H N N 184 GLY HXT H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 RET C1 C N N 339 RET C2 C N N 340 RET C3 C N N 341 RET C4 C N N 342 RET C5 C N N 343 RET C6 C N N 344 RET C7 C N N 345 RET C8 C N N 346 RET C9 C N N 347 RET C10 C N N 348 RET C11 C N N 349 RET C12 C N N 350 RET C13 C N N 351 RET C14 C N N 352 RET C15 C N N 353 RET O1 O N N 354 RET C16 C N N 355 RET C17 C N N 356 RET C18 C N N 357 RET C19 C N N 358 RET C20 C N N 359 RET H21 H N N 360 RET H22 H N N 361 RET H31 H N N 362 RET H32 H N N 363 RET H41 H N N 364 RET H42 H N N 365 RET H7 H N N 366 RET H8 H N N 367 RET H10 H N N 368 RET H11 H N N 369 RET H12 H N N 370 RET H14 H N N 371 RET H15 H N N 372 RET H161 H N N 373 RET H162 H N N 374 RET H163 H N N 375 RET H171 H N N 376 RET H172 H N N 377 RET H173 H N N 378 RET H181 H N N 379 RET H182 H N N 380 RET H183 H N N 381 RET H191 H N N 382 RET H192 H N N 383 RET H193 H N N 384 RET H201 H N N 385 RET H202 H N N 386 RET H203 H N N 387 SER N N N N 388 SER CA C N S 389 SER C C N N 390 SER O O N N 391 SER CB C N N 392 SER OG O N N 393 SER OXT O N N 394 SER H H N N 395 SER H2 H N N 396 SER HA H N N 397 SER HB2 H N N 398 SER HB3 H N N 399 SER HG H N N 400 SER HXT H N N 401 THR N N N N 402 THR CA C N S 403 THR C C N N 404 THR O O N N 405 THR CB C N R 406 THR OG1 O N N 407 THR CG2 C N N 408 THR OXT O N N 409 THR H H N N 410 THR H2 H N N 411 THR HA H N N 412 THR HB H N N 413 THR HG1 H N N 414 THR HG21 H N N 415 THR HG22 H N N 416 THR HG23 H N N 417 THR HXT H N N 418 TRP N N N N 419 TRP CA C N S 420 TRP C C N N 421 TRP O O N N 422 TRP CB C N N 423 TRP CG C Y N 424 TRP CD1 C Y N 425 TRP CD2 C Y N 426 TRP NE1 N Y N 427 TRP CE2 C Y N 428 TRP CE3 C Y N 429 TRP CZ2 C Y N 430 TRP CZ3 C Y N 431 TRP CH2 C Y N 432 TRP OXT O N N 433 TRP H H N N 434 TRP H2 H N N 435 TRP HA H N N 436 TRP HB2 H N N 437 TRP HB3 H N N 438 TRP HD1 H N N 439 TRP HE1 H N N 440 TRP HE3 H N N 441 TRP HZ2 H N N 442 TRP HZ3 H N N 443 TRP HH2 H N N 444 TRP HXT H N N 445 TYR N N N N 446 TYR CA C N S 447 TYR C C N N 448 TYR O O N N 449 TYR CB C N N 450 TYR CG C Y N 451 TYR CD1 C Y N 452 TYR CD2 C Y N 453 TYR CE1 C Y N 454 TYR CE2 C Y N 455 TYR CZ C Y N 456 TYR OH O N N 457 TYR OXT O N N 458 TYR H H N N 459 TYR H2 H N N 460 TYR HA H N N 461 TYR HB2 H N N 462 TYR HB3 H N N 463 TYR HD1 H N N 464 TYR HD2 H N N 465 TYR HE1 H N N 466 TYR HE2 H N N 467 TYR HH H N N 468 TYR HXT H N N 469 VAL N N N N 470 VAL CA C N S 471 VAL C C N N 472 VAL O O N N 473 VAL CB C N N 474 VAL CG1 C N N 475 VAL CG2 C N N 476 VAL OXT O N N 477 VAL H H N N 478 VAL H2 H N N 479 VAL HA H N N 480 VAL HB H N N 481 VAL HG11 H N N 482 VAL HG12 H N N 483 VAL HG13 H N N 484 VAL HG21 H N N 485 VAL HG22 H N N 486 VAL HG23 H N N 487 VAL HXT H N N 488 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BOG C1 O1 sing N N 70 BOG C1 C2 sing N N 71 BOG C1 O5 sing N N 72 BOG C1 H1 sing N N 73 BOG O1 "C1'" sing N N 74 BOG C2 O2 sing N N 75 BOG C2 C3 sing N N 76 BOG C2 H2 sing N N 77 BOG O2 HO2 sing N N 78 BOG C3 O3 sing N N 79 BOG C3 C4 sing N N 80 BOG C3 H3 sing N N 81 BOG O3 HO3 sing N N 82 BOG C4 O4 sing N N 83 BOG C4 C5 sing N N 84 BOG C4 H4 sing N N 85 BOG O4 HO4 sing N N 86 BOG C5 O5 sing N N 87 BOG C5 C6 sing N N 88 BOG C5 H5 sing N N 89 BOG C6 O6 sing N N 90 BOG C6 H61 sing N N 91 BOG C6 H62 sing N N 92 BOG O6 HO6 sing N N 93 BOG "C1'" "C2'" sing N N 94 BOG "C1'" "H1'1" sing N N 95 BOG "C1'" "H1'2" sing N N 96 BOG "C2'" "C3'" sing N N 97 BOG "C2'" "H2'1" sing N N 98 BOG "C2'" "H2'2" sing N N 99 BOG "C3'" "C4'" sing N N 100 BOG "C3'" "H3'1" sing N N 101 BOG "C3'" "H3'2" sing N N 102 BOG "C4'" "C5'" sing N N 103 BOG "C4'" "H4'1" sing N N 104 BOG "C4'" "H4'2" sing N N 105 BOG "C5'" "C6'" sing N N 106 BOG "C5'" "H5'1" sing N N 107 BOG "C5'" "H5'2" sing N N 108 BOG "C6'" "C7'" sing N N 109 BOG "C6'" "H6'1" sing N N 110 BOG "C6'" "H6'2" sing N N 111 BOG "C7'" "C8'" sing N N 112 BOG "C7'" "H7'1" sing N N 113 BOG "C7'" "H7'2" sing N N 114 BOG "C8'" "H8'1" sing N N 115 BOG "C8'" "H8'2" sing N N 116 BOG "C8'" "H8'3" sing N N 117 CYS N CA sing N N 118 CYS N H sing N N 119 CYS N H2 sing N N 120 CYS CA C sing N N 121 CYS CA CB sing N N 122 CYS CA HA sing N N 123 CYS C O doub N N 124 CYS C OXT sing N N 125 CYS CB SG sing N N 126 CYS CB HB2 sing N N 127 CYS CB HB3 sing N N 128 CYS SG HG sing N N 129 CYS OXT HXT sing N N 130 GLN N CA sing N N 131 GLN N H sing N N 132 GLN N H2 sing N N 133 GLN CA C sing N N 134 GLN CA CB sing N N 135 GLN CA HA sing N N 136 GLN C O doub N N 137 GLN C OXT sing N N 138 GLN CB CG sing N N 139 GLN CB HB2 sing N N 140 GLN CB HB3 sing N N 141 GLN CG CD sing N N 142 GLN CG HG2 sing N N 143 GLN CG HG3 sing N N 144 GLN CD OE1 doub N N 145 GLN CD NE2 sing N N 146 GLN NE2 HE21 sing N N 147 GLN NE2 HE22 sing N N 148 GLN OXT HXT sing N N 149 GLU N CA sing N N 150 GLU N H sing N N 151 GLU N H2 sing N N 152 GLU CA C sing N N 153 GLU CA CB sing N N 154 GLU CA HA sing N N 155 GLU C O doub N N 156 GLU C OXT sing N N 157 GLU CB CG sing N N 158 GLU CB HB2 sing N N 159 GLU CB HB3 sing N N 160 GLU CG CD sing N N 161 GLU CG HG2 sing N N 162 GLU CG HG3 sing N N 163 GLU CD OE1 doub N N 164 GLU CD OE2 sing N N 165 GLU OE2 HE2 sing N N 166 GLU OXT HXT sing N N 167 GLY N CA sing N N 168 GLY N H sing N N 169 GLY N H2 sing N N 170 GLY CA C sing N N 171 GLY CA HA2 sing N N 172 GLY CA HA3 sing N N 173 GLY C O doub N N 174 GLY C OXT sing N N 175 GLY OXT HXT sing N N 176 HIS N CA sing N N 177 HIS N H sing N N 178 HIS N H2 sing N N 179 HIS CA C sing N N 180 HIS CA CB sing N N 181 HIS CA HA sing N N 182 HIS C O doub N N 183 HIS C OXT sing N N 184 HIS CB CG sing N N 185 HIS CB HB2 sing N N 186 HIS CB HB3 sing N N 187 HIS CG ND1 sing Y N 188 HIS CG CD2 doub Y N 189 HIS ND1 CE1 doub Y N 190 HIS ND1 HD1 sing N N 191 HIS CD2 NE2 sing Y N 192 HIS CD2 HD2 sing N N 193 HIS CE1 NE2 sing Y N 194 HIS CE1 HE1 sing N N 195 HIS NE2 HE2 sing N N 196 HIS OXT HXT sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 ILE N CA sing N N 200 ILE N H sing N N 201 ILE N H2 sing N N 202 ILE CA C sing N N 203 ILE CA CB sing N N 204 ILE CA HA sing N N 205 ILE C O doub N N 206 ILE C OXT sing N N 207 ILE CB CG1 sing N N 208 ILE CB CG2 sing N N 209 ILE CB HB sing N N 210 ILE CG1 CD1 sing N N 211 ILE CG1 HG12 sing N N 212 ILE CG1 HG13 sing N N 213 ILE CG2 HG21 sing N N 214 ILE CG2 HG22 sing N N 215 ILE CG2 HG23 sing N N 216 ILE CD1 HD11 sing N N 217 ILE CD1 HD12 sing N N 218 ILE CD1 HD13 sing N N 219 ILE OXT HXT sing N N 220 LEU N CA sing N N 221 LEU N H sing N N 222 LEU N H2 sing N N 223 LEU CA C sing N N 224 LEU CA CB sing N N 225 LEU CA HA sing N N 226 LEU C O doub N N 227 LEU C OXT sing N N 228 LEU CB CG sing N N 229 LEU CB HB2 sing N N 230 LEU CB HB3 sing N N 231 LEU CG CD1 sing N N 232 LEU CG CD2 sing N N 233 LEU CG HG sing N N 234 LEU CD1 HD11 sing N N 235 LEU CD1 HD12 sing N N 236 LEU CD1 HD13 sing N N 237 LEU CD2 HD21 sing N N 238 LEU CD2 HD22 sing N N 239 LEU CD2 HD23 sing N N 240 LEU OXT HXT sing N N 241 LYS N CA sing N N 242 LYS N H sing N N 243 LYS N H2 sing N N 244 LYS CA C sing N N 245 LYS CA CB sing N N 246 LYS CA HA sing N N 247 LYS C O doub N N 248 LYS C OXT sing N N 249 LYS CB CG sing N N 250 LYS CB HB2 sing N N 251 LYS CB HB3 sing N N 252 LYS CG CD sing N N 253 LYS CG HG2 sing N N 254 LYS CG HG3 sing N N 255 LYS CD CE sing N N 256 LYS CD HD2 sing N N 257 LYS CD HD3 sing N N 258 LYS CE NZ sing N N 259 LYS CE HE2 sing N N 260 LYS CE HE3 sing N N 261 LYS NZ HZ1 sing N N 262 LYS NZ HZ2 sing N N 263 LYS NZ HZ3 sing N N 264 LYS OXT HXT sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 PHE N CA sing N N 285 PHE N H sing N N 286 PHE N H2 sing N N 287 PHE CA C sing N N 288 PHE CA CB sing N N 289 PHE CA HA sing N N 290 PHE C O doub N N 291 PHE C OXT sing N N 292 PHE CB CG sing N N 293 PHE CB HB2 sing N N 294 PHE CB HB3 sing N N 295 PHE CG CD1 doub Y N 296 PHE CG CD2 sing Y N 297 PHE CD1 CE1 sing Y N 298 PHE CD1 HD1 sing N N 299 PHE CD2 CE2 doub Y N 300 PHE CD2 HD2 sing N N 301 PHE CE1 CZ doub Y N 302 PHE CE1 HE1 sing N N 303 PHE CE2 CZ sing Y N 304 PHE CE2 HE2 sing N N 305 PHE CZ HZ sing N N 306 PHE OXT HXT sing N N 307 PRO N CA sing N N 308 PRO N CD sing N N 309 PRO N H sing N N 310 PRO CA C sing N N 311 PRO CA CB sing N N 312 PRO CA HA sing N N 313 PRO C O doub N N 314 PRO C OXT sing N N 315 PRO CB CG sing N N 316 PRO CB HB2 sing N N 317 PRO CB HB3 sing N N 318 PRO CG CD sing N N 319 PRO CG HG2 sing N N 320 PRO CG HG3 sing N N 321 PRO CD HD2 sing N N 322 PRO CD HD3 sing N N 323 PRO OXT HXT sing N N 324 RET C1 C2 sing N N 325 RET C1 C6 sing N N 326 RET C1 C16 sing N N 327 RET C1 C17 sing N N 328 RET C2 C3 sing N N 329 RET C2 H21 sing N N 330 RET C2 H22 sing N N 331 RET C3 C4 sing N N 332 RET C3 H31 sing N N 333 RET C3 H32 sing N N 334 RET C4 C5 sing N N 335 RET C4 H41 sing N N 336 RET C4 H42 sing N N 337 RET C5 C6 doub N N 338 RET C5 C18 sing N N 339 RET C6 C7 sing N N 340 RET C7 C8 doub N E 341 RET C7 H7 sing N N 342 RET C8 C9 sing N N 343 RET C8 H8 sing N N 344 RET C9 C10 doub N E 345 RET C9 C19 sing N N 346 RET C10 C11 sing N N 347 RET C10 H10 sing N N 348 RET C11 C12 doub N E 349 RET C11 H11 sing N N 350 RET C12 C13 sing N N 351 RET C12 H12 sing N N 352 RET C13 C14 doub N E 353 RET C13 C20 sing N N 354 RET C14 C15 sing N N 355 RET C14 H14 sing N N 356 RET C15 O1 doub N N 357 RET C15 H15 sing N N 358 RET C16 H161 sing N N 359 RET C16 H162 sing N N 360 RET C16 H163 sing N N 361 RET C17 H171 sing N N 362 RET C17 H172 sing N N 363 RET C17 H173 sing N N 364 RET C18 H181 sing N N 365 RET C18 H182 sing N N 366 RET C18 H183 sing N N 367 RET C19 H191 sing N N 368 RET C19 H192 sing N N 369 RET C19 H193 sing N N 370 RET C20 H201 sing N N 371 RET C20 H202 sing N N 372 RET C20 H203 sing N N 373 SER N CA sing N N 374 SER N H sing N N 375 SER N H2 sing N N 376 SER CA C sing N N 377 SER CA CB sing N N 378 SER CA HA sing N N 379 SER C O doub N N 380 SER C OXT sing N N 381 SER CB OG sing N N 382 SER CB HB2 sing N N 383 SER CB HB3 sing N N 384 SER OG HG sing N N 385 SER OXT HXT sing N N 386 THR N CA sing N N 387 THR N H sing N N 388 THR N H2 sing N N 389 THR CA C sing N N 390 THR CA CB sing N N 391 THR CA HA sing N N 392 THR C O doub N N 393 THR C OXT sing N N 394 THR CB OG1 sing N N 395 THR CB CG2 sing N N 396 THR CB HB sing N N 397 THR OG1 HG1 sing N N 398 THR CG2 HG21 sing N N 399 THR CG2 HG22 sing N N 400 THR CG2 HG23 sing N N 401 THR OXT HXT sing N N 402 TRP N CA sing N N 403 TRP N H sing N N 404 TRP N H2 sing N N 405 TRP CA C sing N N 406 TRP CA CB sing N N 407 TRP CA HA sing N N 408 TRP C O doub N N 409 TRP C OXT sing N N 410 TRP CB CG sing N N 411 TRP CB HB2 sing N N 412 TRP CB HB3 sing N N 413 TRP CG CD1 doub Y N 414 TRP CG CD2 sing Y N 415 TRP CD1 NE1 sing Y N 416 TRP CD1 HD1 sing N N 417 TRP CD2 CE2 doub Y N 418 TRP CD2 CE3 sing Y N 419 TRP NE1 CE2 sing Y N 420 TRP NE1 HE1 sing N N 421 TRP CE2 CZ2 sing Y N 422 TRP CE3 CZ3 doub Y N 423 TRP CE3 HE3 sing N N 424 TRP CZ2 CH2 doub Y N 425 TRP CZ2 HZ2 sing N N 426 TRP CZ3 CH2 sing Y N 427 TRP CZ3 HZ3 sing N N 428 TRP CH2 HH2 sing N N 429 TRP OXT HXT sing N N 430 TYR N CA sing N N 431 TYR N H sing N N 432 TYR N H2 sing N N 433 TYR CA C sing N N 434 TYR CA CB sing N N 435 TYR CA HA sing N N 436 TYR C O doub N N 437 TYR C OXT sing N N 438 TYR CB CG sing N N 439 TYR CB HB2 sing N N 440 TYR CB HB3 sing N N 441 TYR CG CD1 doub Y N 442 TYR CG CD2 sing Y N 443 TYR CD1 CE1 sing Y N 444 TYR CD1 HD1 sing N N 445 TYR CD2 CE2 doub Y N 446 TYR CD2 HD2 sing N N 447 TYR CE1 CZ doub Y N 448 TYR CE1 HE1 sing N N 449 TYR CE2 CZ sing Y N 450 TYR CE2 HE2 sing N N 451 TYR CZ OH sing N N 452 TYR OH HH sing N N 453 TYR OXT HXT sing N N 454 VAL N CA sing N N 455 VAL N H sing N N 456 VAL N H2 sing N N 457 VAL CA C sing N N 458 VAL CA CB sing N N 459 VAL CA HA sing N N 460 VAL C O doub N N 461 VAL C OXT sing N N 462 VAL CB CG1 sing N N 463 VAL CB CG2 sing N N 464 VAL CB HB sing N N 465 VAL CG1 HG11 sing N N 466 VAL CG1 HG12 sing N N 467 VAL CG1 HG13 sing N N 468 VAL CG2 HG21 sing N N 469 VAL CG2 HG22 sing N N 470 VAL CG2 HG23 sing N N 471 VAL OXT HXT sing N N 472 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5AHY _pdbx_initial_refinement_model.details 'ISOMORPHOUS STRUCTURE OF CHLORIDE-BOUND HALORHODOPSIN, PDB ID 5AHY' # _atom_sites.entry_id 5AHZ _atom_sites.fract_transf_matrix[1][1] 0.009612 _atom_sites.fract_transf_matrix[1][2] 0.005549 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011099 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007230 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_