data_5AY2 # _entry.id 5AY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5AY2 pdb_00005ay2 10.2210/pdb5ay2/pdb WWPDB D_1300000150 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-21 2 'Structure model' 1 1 2015-11-11 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' diffrn_source 3 3 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 3 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_struct_conn.conn_type_id' 7 4 'Structure model' '_struct_conn.id' 8 4 'Structure model' '_struct_conn.pdbx_dist_value' 9 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 4 'Structure model' '_struct_conn_type.id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5AY2 _pdbx_database_status.recvd_initial_deposition_date 2015-08-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5AY3 PDB . unspecified 5AY4 PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Tada, Y.' 2 'Dairaku, T.' 3 'Saneyoshi, H.' 4 'Okamoto, I.' 5 'Tanaka, Y.' 6 'Ono, A.' 7 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 54 _citation.language ? _citation.page_first 13323 _citation.page_last 13326 _citation.title 'High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201507894 _citation.pdbx_database_id_PubMed 26448329 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Tada, Y.' 2 ? primary 'Dairaku, T.' 3 ? primary 'Saneyoshi, H.' 4 ? primary 'Okamoto, I.' 5 ? primary 'Tanaka, Y.' 6 ? primary 'Ono, A.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3') ; 3850.208 4 ? ? ? ? 2 non-polymer syn 'SILVER ION' 107.868 4 ? ? ? ? 3 water nat water 18.015 328 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGACU(CBR)GACUCC' _entity_poly.pdbx_seq_one_letter_code_can GGACUCGACUCC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SILVER ION' AG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 U n 1 6 CBR n 1 7 G n 1 8 A n 1 9 C n 1 10 U n 1 11 C n 1 12 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 CBR 6 6 6 CBR CBR A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 U 10 10 10 U U A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 A 3 3 3 A A B . n B 1 4 C 4 4 4 C C B . n B 1 5 U 5 5 5 U U B . n B 1 6 CBR 6 6 6 CBR CBR B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 C 9 9 9 C C B . n B 1 10 U 10 10 10 U U B . n B 1 11 C 11 11 11 C C B . n B 1 12 C 12 12 12 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 G 2 2 2 G G C . n C 1 3 A 3 3 3 A A C . n C 1 4 C 4 4 4 C C C . n C 1 5 U 5 5 5 U U C . n C 1 6 CBR 6 6 6 CBR CBR C . n C 1 7 G 7 7 7 G G C . n C 1 8 A 8 8 8 A A C . n C 1 9 C 9 9 9 C C C . n C 1 10 U 10 10 10 U U C . n C 1 11 C 11 11 11 C C C . n C 1 12 C 12 12 12 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 G 2 2 2 G G D . n D 1 3 A 3 3 3 A A D . n D 1 4 C 4 4 4 C C D . n D 1 5 U 5 5 5 U U D . n D 1 6 CBR 6 6 6 CBR CBR D . n D 1 7 G 7 7 7 G G D . n D 1 8 A 8 8 8 A A D . n D 1 9 C 9 9 9 C C D . n D 1 10 U 10 10 10 U U D . n D 1 11 C 11 11 11 C C D . n D 1 12 C 12 12 12 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AG 1 101 3 AG AG A . F 2 AG 1 102 4 AG AG A . G 2 AG 1 101 1 AG AG C . H 2 AG 1 102 2 AG AG C . I 3 HOH 1 201 195 HOH HOH A . I 3 HOH 2 202 273 HOH HOH A . I 3 HOH 3 203 175 HOH HOH A . I 3 HOH 4 204 154 HOH HOH A . I 3 HOH 5 205 409 HOH HOH A . I 3 HOH 6 206 207 HOH HOH A . I 3 HOH 7 207 153 HOH HOH A . I 3 HOH 8 208 427 HOH HOH A . I 3 HOH 9 209 379 HOH HOH A . I 3 HOH 10 210 223 HOH HOH A . I 3 HOH 11 211 349 HOH HOH A . I 3 HOH 12 212 352 HOH HOH A . I 3 HOH 13 213 193 HOH HOH A . I 3 HOH 14 214 327 HOH HOH A . I 3 HOH 15 215 291 HOH HOH A . I 3 HOH 16 216 144 HOH HOH A . I 3 HOH 17 217 258 HOH HOH A . I 3 HOH 18 218 228 HOH HOH A . I 3 HOH 19 219 138 HOH HOH A . I 3 HOH 20 220 337 HOH HOH A . I 3 HOH 21 221 179 HOH HOH A . I 3 HOH 22 222 365 HOH HOH A . I 3 HOH 23 223 331 HOH HOH A . I 3 HOH 24 224 375 HOH HOH A . I 3 HOH 25 225 367 HOH HOH A . I 3 HOH 26 226 149 HOH HOH A . I 3 HOH 27 227 348 HOH HOH A . I 3 HOH 28 228 346 HOH HOH A . I 3 HOH 29 229 215 HOH HOH A . I 3 HOH 30 230 412 HOH HOH A . I 3 HOH 31 231 103 HOH HOH A . I 3 HOH 32 232 241 HOH HOH A . I 3 HOH 33 233 192 HOH HOH A . I 3 HOH 34 234 353 HOH HOH A . I 3 HOH 35 235 188 HOH HOH A . I 3 HOH 36 236 124 HOH HOH A . I 3 HOH 37 237 229 HOH HOH A . I 3 HOH 38 238 255 HOH HOH A . I 3 HOH 39 239 139 HOH HOH A . I 3 HOH 40 240 187 HOH HOH A . I 3 HOH 41 241 110 HOH HOH A . I 3 HOH 42 242 155 HOH HOH A . I 3 HOH 43 243 422 HOH HOH A . I 3 HOH 44 244 146 HOH HOH A . I 3 HOH 45 245 177 HOH HOH A . I 3 HOH 46 246 322 HOH HOH A . I 3 HOH 47 247 357 HOH HOH A . I 3 HOH 48 248 162 HOH HOH A . I 3 HOH 49 249 160 HOH HOH A . I 3 HOH 50 250 108 HOH HOH A . I 3 HOH 51 251 232 HOH HOH A . I 3 HOH 52 252 253 HOH HOH A . I 3 HOH 53 253 251 HOH HOH A . I 3 HOH 54 254 185 HOH HOH A . I 3 HOH 55 255 201 HOH HOH A . I 3 HOH 56 256 226 HOH HOH A . I 3 HOH 57 257 339 HOH HOH A . I 3 HOH 58 258 421 HOH HOH A . I 3 HOH 59 259 264 HOH HOH A . I 3 HOH 60 260 227 HOH HOH A . I 3 HOH 61 261 121 HOH HOH A . I 3 HOH 62 262 167 HOH HOH A . I 3 HOH 63 263 354 HOH HOH A . I 3 HOH 64 264 408 HOH HOH A . I 3 HOH 65 265 217 HOH HOH A . I 3 HOH 66 266 168 HOH HOH A . I 3 HOH 67 267 423 HOH HOH A . I 3 HOH 68 268 120 HOH HOH A . I 3 HOH 69 269 118 HOH HOH A . I 3 HOH 70 270 130 HOH HOH A . I 3 HOH 71 271 362 HOH HOH A . I 3 HOH 72 272 133 HOH HOH A . I 3 HOH 73 273 388 HOH HOH A . I 3 HOH 74 274 366 HOH HOH A . I 3 HOH 75 275 371 HOH HOH A . I 3 HOH 76 276 328 HOH HOH A . I 3 HOH 77 277 341 HOH HOH A . I 3 HOH 78 278 163 HOH HOH A . I 3 HOH 79 279 368 HOH HOH A . I 3 HOH 80 280 428 HOH HOH A . I 3 HOH 81 281 411 HOH HOH A . I 3 HOH 82 282 311 HOH HOH A . I 3 HOH 83 283 372 HOH HOH A . I 3 HOH 84 284 245 HOH HOH A . I 3 HOH 85 285 267 HOH HOH A . I 3 HOH 86 286 406 HOH HOH A . I 3 HOH 87 287 335 HOH HOH A . I 3 HOH 88 288 420 HOH HOH A . I 3 HOH 89 289 355 HOH HOH A . I 3 HOH 90 290 294 HOH HOH A . I 3 HOH 91 291 364 HOH HOH A . J 3 HOH 1 101 230 HOH HOH B . J 3 HOH 2 102 307 HOH HOH B . J 3 HOH 3 103 286 HOH HOH B . J 3 HOH 4 104 259 HOH HOH B . J 3 HOH 5 105 105 HOH HOH B . J 3 HOH 6 106 396 HOH HOH B . J 3 HOH 7 107 199 HOH HOH B . J 3 HOH 8 108 219 HOH HOH B . J 3 HOH 9 109 272 HOH HOH B . J 3 HOH 10 110 426 HOH HOH B . J 3 HOH 11 111 356 HOH HOH B . J 3 HOH 12 112 276 HOH HOH B . J 3 HOH 13 113 270 HOH HOH B . J 3 HOH 14 114 249 HOH HOH B . J 3 HOH 15 115 216 HOH HOH B . J 3 HOH 16 116 206 HOH HOH B . J 3 HOH 17 117 145 HOH HOH B . J 3 HOH 18 118 181 HOH HOH B . J 3 HOH 19 119 174 HOH HOH B . J 3 HOH 20 120 129 HOH HOH B . J 3 HOH 21 121 275 HOH HOH B . J 3 HOH 22 122 166 HOH HOH B . J 3 HOH 23 123 300 HOH HOH B . J 3 HOH 24 124 285 HOH HOH B . J 3 HOH 25 125 109 HOH HOH B . J 3 HOH 26 126 336 HOH HOH B . J 3 HOH 27 127 156 HOH HOH B . J 3 HOH 28 128 399 HOH HOH B . J 3 HOH 29 129 150 HOH HOH B . J 3 HOH 30 130 400 HOH HOH B . J 3 HOH 31 131 292 HOH HOH B . J 3 HOH 32 132 405 HOH HOH B . J 3 HOH 33 133 415 HOH HOH B . J 3 HOH 34 134 113 HOH HOH B . J 3 HOH 35 135 101 HOH HOH B . J 3 HOH 36 136 325 HOH HOH B . J 3 HOH 37 137 178 HOH HOH B . J 3 HOH 38 138 403 HOH HOH B . J 3 HOH 39 139 296 HOH HOH B . J 3 HOH 40 140 404 HOH HOH B . J 3 HOH 41 141 127 HOH HOH B . J 3 HOH 42 142 141 HOH HOH B . J 3 HOH 43 143 142 HOH HOH B . J 3 HOH 44 144 345 HOH HOH B . J 3 HOH 45 145 317 HOH HOH B . J 3 HOH 46 146 205 HOH HOH B . J 3 HOH 47 147 169 HOH HOH B . J 3 HOH 48 148 395 HOH HOH B . J 3 HOH 49 149 361 HOH HOH B . J 3 HOH 50 150 137 HOH HOH B . J 3 HOH 51 151 116 HOH HOH B . J 3 HOH 52 152 298 HOH HOH B . J 3 HOH 53 153 263 HOH HOH B . J 3 HOH 54 154 136 HOH HOH B . J 3 HOH 55 155 209 HOH HOH B . J 3 HOH 56 156 170 HOH HOH B . J 3 HOH 57 157 140 HOH HOH B . J 3 HOH 58 158 247 HOH HOH B . J 3 HOH 59 159 358 HOH HOH B . J 3 HOH 60 160 104 HOH HOH B . J 3 HOH 61 161 225 HOH HOH B . J 3 HOH 62 162 301 HOH HOH B . J 3 HOH 63 163 256 HOH HOH B . J 3 HOH 64 164 111 HOH HOH B . J 3 HOH 65 165 212 HOH HOH B . J 3 HOH 66 166 236 HOH HOH B . J 3 HOH 67 167 102 HOH HOH B . J 3 HOH 68 168 203 HOH HOH B . J 3 HOH 69 169 190 HOH HOH B . J 3 HOH 70 170 122 HOH HOH B . J 3 HOH 71 171 299 HOH HOH B . J 3 HOH 72 172 268 HOH HOH B . J 3 HOH 73 173 202 HOH HOH B . J 3 HOH 74 174 243 HOH HOH B . J 3 HOH 75 175 321 HOH HOH B . J 3 HOH 76 176 315 HOH HOH B . J 3 HOH 77 177 390 HOH HOH B . J 3 HOH 78 178 290 HOH HOH B . J 3 HOH 79 179 334 HOH HOH B . J 3 HOH 80 180 222 HOH HOH B . J 3 HOH 81 181 389 HOH HOH B . J 3 HOH 82 182 413 HOH HOH B . J 3 HOH 83 183 359 HOH HOH B . J 3 HOH 84 184 333 HOH HOH B . J 3 HOH 85 185 231 HOH HOH B . J 3 HOH 86 186 293 HOH HOH B . J 3 HOH 87 187 287 HOH HOH B . J 3 HOH 88 188 401 HOH HOH B . J 3 HOH 89 189 329 HOH HOH B . K 3 HOH 1 201 198 HOH HOH C . K 3 HOH 2 202 238 HOH HOH C . K 3 HOH 3 203 119 HOH HOH C . K 3 HOH 4 204 158 HOH HOH C . K 3 HOH 5 205 271 HOH HOH C . K 3 HOH 6 206 176 HOH HOH C . K 3 HOH 7 207 117 HOH HOH C . K 3 HOH 8 208 342 HOH HOH C . K 3 HOH 9 209 377 HOH HOH C . K 3 HOH 10 210 425 HOH HOH C . K 3 HOH 11 211 126 HOH HOH C . K 3 HOH 12 212 310 HOH HOH C . K 3 HOH 13 213 347 HOH HOH C . K 3 HOH 14 214 252 HOH HOH C . K 3 HOH 15 215 214 HOH HOH C . K 3 HOH 16 216 254 HOH HOH C . K 3 HOH 17 217 147 HOH HOH C . K 3 HOH 18 218 189 HOH HOH C . K 3 HOH 19 219 302 HOH HOH C . K 3 HOH 20 220 418 HOH HOH C . K 3 HOH 21 221 430 HOH HOH C . K 3 HOH 22 222 183 HOH HOH C . K 3 HOH 23 223 246 HOH HOH C . K 3 HOH 24 224 424 HOH HOH C . K 3 HOH 25 225 277 HOH HOH C . K 3 HOH 26 226 295 HOH HOH C . K 3 HOH 27 227 289 HOH HOH C . K 3 HOH 28 228 350 HOH HOH C . K 3 HOH 29 229 380 HOH HOH C . K 3 HOH 30 230 274 HOH HOH C . K 3 HOH 31 231 224 HOH HOH C . K 3 HOH 32 232 235 HOH HOH C . K 3 HOH 33 233 304 HOH HOH C . K 3 HOH 34 234 363 HOH HOH C . K 3 HOH 35 235 330 HOH HOH C . K 3 HOH 36 236 303 HOH HOH C . K 3 HOH 37 237 191 HOH HOH C . K 3 HOH 38 238 237 HOH HOH C . K 3 HOH 39 239 204 HOH HOH C . K 3 HOH 40 240 159 HOH HOH C . K 3 HOH 41 241 381 HOH HOH C . K 3 HOH 42 242 148 HOH HOH C . K 3 HOH 43 243 417 HOH HOH C . K 3 HOH 44 244 260 HOH HOH C . K 3 HOH 45 245 262 HOH HOH C . K 3 HOH 46 246 151 HOH HOH C . K 3 HOH 47 247 234 HOH HOH C . K 3 HOH 48 248 248 HOH HOH C . K 3 HOH 49 249 135 HOH HOH C . K 3 HOH 50 250 197 HOH HOH C . K 3 HOH 51 251 338 HOH HOH C . K 3 HOH 52 252 370 HOH HOH C . K 3 HOH 53 253 318 HOH HOH C . K 3 HOH 54 254 316 HOH HOH C . K 3 HOH 55 255 134 HOH HOH C . K 3 HOH 56 256 284 HOH HOH C . K 3 HOH 57 257 242 HOH HOH C . K 3 HOH 58 258 398 HOH HOH C . K 3 HOH 59 259 165 HOH HOH C . K 3 HOH 60 260 305 HOH HOH C . K 3 HOH 61 261 414 HOH HOH C . K 3 HOH 62 262 309 HOH HOH C . K 3 HOH 63 263 278 HOH HOH C . K 3 HOH 64 264 313 HOH HOH C . K 3 HOH 65 265 123 HOH HOH C . K 3 HOH 66 266 281 HOH HOH C . K 3 HOH 67 267 429 HOH HOH C . K 3 HOH 68 268 391 HOH HOH C . K 3 HOH 69 269 269 HOH HOH C . K 3 HOH 70 270 308 HOH HOH C . K 3 HOH 71 271 387 HOH HOH C . K 3 HOH 72 272 373 HOH HOH C . K 3 HOH 73 273 383 HOH HOH C . K 3 HOH 74 274 385 HOH HOH C . K 3 HOH 75 275 211 HOH HOH C . K 3 HOH 76 276 312 HOH HOH C . K 3 HOH 77 277 374 HOH HOH C . L 3 HOH 1 201 279 HOH HOH D . L 3 HOH 2 202 320 HOH HOH D . L 3 HOH 3 203 194 HOH HOH D . L 3 HOH 4 204 182 HOH HOH D . L 3 HOH 5 205 410 HOH HOH D . L 3 HOH 6 206 186 HOH HOH D . L 3 HOH 7 207 164 HOH HOH D . L 3 HOH 8 208 132 HOH HOH D . L 3 HOH 9 209 112 HOH HOH D . L 3 HOH 10 210 340 HOH HOH D . L 3 HOH 11 211 288 HOH HOH D . L 3 HOH 12 212 239 HOH HOH D . L 3 HOH 13 213 161 HOH HOH D . L 3 HOH 14 214 173 HOH HOH D . L 3 HOH 15 215 210 HOH HOH D . L 3 HOH 16 216 114 HOH HOH D . L 3 HOH 17 217 344 HOH HOH D . L 3 HOH 18 218 393 HOH HOH D . L 3 HOH 19 219 397 HOH HOH D . L 3 HOH 20 220 128 HOH HOH D . L 3 HOH 21 221 171 HOH HOH D . L 3 HOH 22 222 143 HOH HOH D . L 3 HOH 23 223 184 HOH HOH D . L 3 HOH 24 224 213 HOH HOH D . L 3 HOH 25 225 200 HOH HOH D . L 3 HOH 26 226 208 HOH HOH D . L 3 HOH 27 227 392 HOH HOH D . L 3 HOH 28 228 221 HOH HOH D . L 3 HOH 29 229 324 HOH HOH D . L 3 HOH 30 230 250 HOH HOH D . L 3 HOH 31 231 265 HOH HOH D . L 3 HOH 32 232 261 HOH HOH D . L 3 HOH 33 233 240 HOH HOH D . L 3 HOH 34 234 244 HOH HOH D . L 3 HOH 35 235 107 HOH HOH D . L 3 HOH 36 236 402 HOH HOH D . L 3 HOH 37 237 220 HOH HOH D . L 3 HOH 38 238 280 HOH HOH D . L 3 HOH 39 239 257 HOH HOH D . L 3 HOH 40 240 115 HOH HOH D . L 3 HOH 41 241 172 HOH HOH D . L 3 HOH 42 242 407 HOH HOH D . L 3 HOH 43 243 180 HOH HOH D . L 3 HOH 44 244 378 HOH HOH D . L 3 HOH 45 245 218 HOH HOH D . L 3 HOH 46 246 131 HOH HOH D . L 3 HOH 47 247 419 HOH HOH D . L 3 HOH 48 248 306 HOH HOH D . L 3 HOH 49 249 106 HOH HOH D . L 3 HOH 50 250 233 HOH HOH D . L 3 HOH 51 251 351 HOH HOH D . L 3 HOH 52 252 394 HOH HOH D . L 3 HOH 53 253 384 HOH HOH D . L 3 HOH 54 254 125 HOH HOH D . L 3 HOH 55 255 319 HOH HOH D . L 3 HOH 56 256 360 HOH HOH D . L 3 HOH 57 257 297 HOH HOH D . L 3 HOH 58 258 196 HOH HOH D . L 3 HOH 59 259 157 HOH HOH D . L 3 HOH 60 260 266 HOH HOH D . L 3 HOH 61 261 382 HOH HOH D . L 3 HOH 62 262 282 HOH HOH D . L 3 HOH 63 263 332 HOH HOH D . L 3 HOH 64 264 323 HOH HOH D . L 3 HOH 65 265 386 HOH HOH D . L 3 HOH 66 266 343 HOH HOH D . L 3 HOH 67 267 416 HOH HOH D . L 3 HOH 68 268 369 HOH HOH D . L 3 HOH 69 269 376 HOH HOH D . L 3 HOH 70 270 283 HOH HOH D . L 3 HOH 71 271 314 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? CNS ? ? ? 1.3 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _cell.entry_id 5AY2 _cell.length_a 29.480 _cell.length_b 46.860 _cell.length_c 89.940 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5AY2 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5AY2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MPD, Spermine, Lithium Nitrate, MOPS' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-11-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5AY2 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.000 _reflns.d_resolution_high 1.300 _reflns.number_obs 31405 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.03200 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.0200 _reflns.B_iso_Wilson_estimate 19.71 _reflns.pdbx_redundancy 6.300 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.33 _reflns_shell.percent_possible_all 98.2 _reflns_shell.Rmerge_I_obs 0.21000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.280 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5AY2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 31405 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.00 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.174 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.174 _refine.ls_R_factor_R_free 0.189 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 3145 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.51 _refine.aniso_B[1][1] 0.38200 _refine.aniso_B[2][2] 1.21900 _refine.aniso_B[3][3] -1.60100 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol 40.68 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1000 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 328 _refine_hist.number_atoms_total 1332 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 45.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.003 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 0.000 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 0.000 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.170 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 1.657 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.30 _refine_ls_shell.d_res_low 1.35 _refine_ls_shell.number_reflns_R_work 2756 _refine_ls_shell.R_factor_R_work 0.2435 _refine_ls_shell.percent_reflns_obs 97.90 _refine_ls_shell.R_factor_R_free 0.2806 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 282 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 BRU.PARAM ? 'X-RAY DIFFRACTION' 2 DNA-RNA_FREE.PARAM ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ION.PARAM ? # _struct.entry_id 5AY2 _struct.title 'Crystal structure of RNA duplex containing C-Ag(I)-C base pairs' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5AY2 _struct_keywords.text 'RNA, metallo base pair, Ag(I)' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5AY2 _struct_ref.pdbx_db_accession 5AY2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5AY2 A 1 ? 12 ? 5AY2 1 ? 12 ? 1 12 2 1 5AY2 B 1 ? 12 ? 5AY2 1 ? 12 ? 1 12 3 1 5AY2 C 1 ? 12 ? 5AY2 1 ? 12 ? 1 12 4 1 5AY2 D 1 ? 12 ? 5AY2 1 ? 12 ? 1 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2630 ? 1 MORE -15 ? 1 'SSA (A^2)' 4050 ? 2 'ABSA (A^2)' 2610 ? 2 MORE -15 ? 2 'SSA (A^2)' 4090 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 5 "O3'" ? ? ? 1_555 A CBR 6 P ? ? A U 5 A CBR 6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A CBR 6 "O3'" ? ? ? 1_555 A G 7 P ? ? A CBR 6 A G 7 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale3 covale both ? B U 5 "O3'" ? ? ? 1_555 B CBR 6 P ? ? B U 5 B CBR 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale both ? B CBR 6 "O3'" ? ? ? 1_555 B G 7 P ? ? B CBR 6 B G 7 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale5 covale both ? C U 5 "O3'" ? ? ? 1_555 C CBR 6 P ? ? C U 5 C CBR 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale6 covale both ? C CBR 6 "O3'" ? ? ? 1_555 C G 7 P ? ? C CBR 6 C G 7 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale7 covale both ? D U 5 "O3'" ? ? ? 1_555 D CBR 6 P ? ? D U 5 D CBR 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale8 covale both ? D CBR 6 "O3'" ? ? ? 1_555 D G 7 P ? ? D CBR 6 D G 7 1_555 ? ? ? ? ? ? ? 1.602 ? ? metalc1 metalc ? ? A C 4 N3 ? ? ? 1_555 F AG . AG ? ? A C 4 A AG 102 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc2 metalc ? ? A C 9 N3 ? ? ? 1_555 E AG . AG ? ? A C 9 A AG 101 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc3 metalc ? ? E AG . AG ? ? ? 1_555 B C 4 N3 ? ? A AG 101 B C 4 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc4 metalc ? ? F AG . AG ? ? ? 1_555 B C 9 N3 ? ? A AG 102 B C 9 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc5 metalc ? ? C C 4 N3 ? ? ? 1_555 H AG . AG ? ? C C 4 C AG 102 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc6 metalc ? ? C C 9 N3 ? ? ? 1_555 G AG . AG ? ? C C 9 C AG 101 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc7 metalc ? ? G AG . AG ? ? ? 1_555 D C 4 N3 ? ? C AG 101 D C 4 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc8 metalc ? ? H AG . AG ? ? ? 1_555 D C 9 N3 ? ? C AG 102 D C 9 1_555 ? ? ? ? ? ? ? 2.302 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 10 N3 ? ? A A 3 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 10 O4 ? ? A A 3 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 B A 8 N1 ? ? A U 5 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 B A 8 N6 ? ? A U 5 B A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A CBR 6 N3 ? ? ? 1_555 B G 7 N1 ? ? A CBR 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A CBR 6 N4 ? ? ? 1_555 B G 7 O6 ? ? A CBR 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A CBR 6 O2 ? ? ? 1_555 B G 7 N2 ? ? A CBR 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 B CBR 6 N3 ? ? A G 7 B CBR 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 B CBR 6 O2 ? ? A G 7 B CBR 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 B CBR 6 N4 ? ? A G 7 B CBR 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 8 N1 ? ? ? 1_555 B U 5 N3 ? ? A A 8 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N6 ? ? ? 1_555 B U 5 O4 ? ? A A 8 B U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 10 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 10 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 10 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 10 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C A 3 N1 ? ? ? 1_555 D U 10 N3 ? ? C A 3 D U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C A 3 N6 ? ? ? 1_555 D U 10 O4 ? ? C A 3 D U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C U 5 N3 ? ? ? 1_555 D A 8 N1 ? ? C U 5 D A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C U 5 O4 ? ? ? 1_555 D A 8 N6 ? ? C U 5 D A 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C CBR 6 N3 ? ? ? 1_555 D G 7 N1 ? ? C CBR 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C CBR 6 N4 ? ? ? 1_555 D G 7 O6 ? ? C CBR 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C CBR 6 O2 ? ? ? 1_555 D G 7 N2 ? ? C CBR 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 7 N1 ? ? ? 1_555 D CBR 6 N3 ? ? C G 7 D CBR 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 7 N2 ? ? ? 1_555 D CBR 6 O2 ? ? C G 7 D CBR 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 7 O6 ? ? ? 1_555 D CBR 6 N4 ? ? C G 7 D CBR 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C A 8 N1 ? ? ? 1_555 D U 5 N3 ? ? C A 8 D U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C A 8 N6 ? ? ? 1_555 D U 5 O4 ? ? C A 8 D U 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C U 10 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 10 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C U 10 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 10 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A C 4 ? A C 4 ? 1_555 AG ? F AG . ? A AG 102 ? 1_555 N3 ? B C 9 ? B C 9 ? 1_555 179.3 ? 2 N3 ? A C 9 ? A C 9 ? 1_555 AG ? E AG . ? A AG 101 ? 1_555 N3 ? B C 4 ? B C 4 ? 1_555 177.6 ? 3 N3 ? C C 4 ? C C 4 ? 1_555 AG ? H AG . ? C AG 102 ? 1_555 N3 ? D C 9 ? D C 9 ? 1_555 177.2 ? 4 N3 ? C C 9 ? C C 9 ? 1_555 AG ? G AG . ? C AG 101 ? 1_555 N3 ? D C 4 ? D C 4 ? 1_555 179.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AG 101 ? 6 'binding site for residue AG A 101' AC2 Software A AG 102 ? 6 'binding site for residue AG A 102' AC3 Software C AG 101 ? 6 'binding site for residue AG C 101' AC4 Software C AG 102 ? 5 'binding site for residue AG C 102' AC5 Software B CBR 6 ? 19 'binding site for Di-nucleotide CBR B 6 and G B 7' AC6 Software C CBR 6 ? 22 'binding site for Di-nucleotide CBR C 6 and G C 7' AC7 Software D CBR 6 ? 22 'binding site for Di-nucleotide CBR D 6 and G D 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 8 ? A A 8 . ? 1_555 ? 2 AC1 6 C A 9 ? C A 9 . ? 1_555 ? 3 AC1 6 U A 10 ? U A 10 . ? 1_555 ? 4 AC1 6 A B 3 ? A B 3 . ? 1_555 ? 5 AC1 6 C B 4 ? C B 4 . ? 1_555 ? 6 AC1 6 U B 5 ? U B 5 . ? 1_555 ? 7 AC2 6 A A 3 ? A A 3 . ? 1_555 ? 8 AC2 6 C A 4 ? C A 4 . ? 1_555 ? 9 AC2 6 U A 5 ? U A 5 . ? 1_555 ? 10 AC2 6 A B 8 ? A B 8 . ? 1_555 ? 11 AC2 6 C B 9 ? C B 9 . ? 1_555 ? 12 AC2 6 U B 10 ? U B 10 . ? 1_555 ? 13 AC3 6 A C 8 ? A C 8 . ? 1_555 ? 14 AC3 6 C C 9 ? C C 9 . ? 1_555 ? 15 AC3 6 U C 10 ? U C 10 . ? 1_555 ? 16 AC3 6 A D 3 ? A D 3 . ? 1_555 ? 17 AC3 6 C D 4 ? C D 4 . ? 1_555 ? 18 AC3 6 U D 5 ? U D 5 . ? 1_555 ? 19 AC4 5 A C 3 ? A C 3 . ? 1_555 ? 20 AC4 5 C C 4 ? C C 4 . ? 1_555 ? 21 AC4 5 A D 8 ? A D 8 . ? 1_555 ? 22 AC4 5 C D 9 ? C D 9 . ? 1_555 ? 23 AC4 5 U D 10 ? U D 10 . ? 1_555 ? 24 AC5 19 CBR A 6 ? CBR A 6 . ? 1_555 ? 25 AC5 19 G A 7 ? G A 7 . ? 1_555 ? 26 AC5 19 A A 8 ? A A 8 . ? 1_555 ? 27 AC5 19 HOH I . ? HOH A 206 . ? 4_445 ? 28 AC5 19 U B 5 ? U B 5 . ? 1_555 ? 29 AC5 19 A B 8 ? A B 8 . ? 1_555 ? 30 AC5 19 HOH J . ? HOH B 111 . ? 1_555 ? 31 AC5 19 HOH J . ? HOH B 114 . ? 1_555 ? 32 AC5 19 HOH J . ? HOH B 116 . ? 1_555 ? 33 AC5 19 HOH J . ? HOH B 117 . ? 1_555 ? 34 AC5 19 HOH J . ? HOH B 118 . ? 1_555 ? 35 AC5 19 HOH J . ? HOH B 137 . ? 1_555 ? 36 AC5 19 HOH J . ? HOH B 140 . ? 1_555 ? 37 AC5 19 HOH J . ? HOH B 144 . ? 1_555 ? 38 AC5 19 HOH J . ? HOH B 148 . ? 1_555 ? 39 AC5 19 HOH J . ? HOH B 166 . ? 1_555 ? 40 AC5 19 HOH J . ? HOH B 171 . ? 1_555 ? 41 AC5 19 HOH J . ? HOH B 172 . ? 1_555 ? 42 AC5 19 HOH K . ? HOH C 246 . ? 1_555 ? 43 AC6 22 U B 10 ? U B 10 . ? 2_454 ? 44 AC6 22 C B 11 ? C B 11 . ? 2_454 ? 45 AC6 22 HOH J . ? HOH B 105 . ? 2_454 ? 46 AC6 22 U C 5 ? U C 5 . ? 1_555 ? 47 AC6 22 A C 8 ? A C 8 . ? 1_555 ? 48 AC6 22 HOH K . ? HOH C 201 . ? 1_555 ? 49 AC6 22 HOH K . ? HOH C 203 . ? 1_555 ? 50 AC6 22 HOH K . ? HOH C 210 . ? 1_555 ? 51 AC6 22 HOH K . ? HOH C 213 . ? 1_555 ? 52 AC6 22 HOH K . ? HOH C 215 . ? 1_555 ? 53 AC6 22 HOH K . ? HOH C 216 . ? 1_555 ? 54 AC6 22 HOH K . ? HOH C 219 . ? 1_555 ? 55 AC6 22 HOH K . ? HOH C 222 . ? 1_555 ? 56 AC6 22 HOH K . ? HOH C 233 . ? 1_555 ? 57 AC6 22 HOH K . ? HOH C 245 . ? 1_555 ? 58 AC6 22 HOH K . ? HOH C 252 . ? 1_555 ? 59 AC6 22 HOH K . ? HOH C 253 . ? 1_555 ? 60 AC6 22 HOH K . ? HOH C 262 . ? 1_555 ? 61 AC6 22 CBR D 6 ? CBR D 6 . ? 1_555 ? 62 AC6 22 G D 7 ? G D 7 . ? 1_555 ? 63 AC6 22 A D 8 ? A D 8 . ? 1_555 ? 64 AC6 22 C D 12 ? C D 12 . ? 3_644 ? 65 AC7 22 HOH I . ? HOH A 216 . ? 1_555 ? 66 AC7 22 CBR C 6 ? CBR C 6 . ? 1_555 ? 67 AC7 22 G C 7 ? G C 7 . ? 1_555 ? 68 AC7 22 A C 8 ? A C 8 . ? 1_555 ? 69 AC7 22 U D 5 ? U D 5 . ? 1_555 ? 70 AC7 22 A D 8 ? A D 8 . ? 1_555 ? 71 AC7 22 C D 11 ? C D 11 . ? 3_644 ? 72 AC7 22 C D 12 ? C D 12 . ? 3_644 ? 73 AC7 22 HOH L . ? HOH D 207 . ? 1_555 ? 74 AC7 22 HOH L . ? HOH D 212 . ? 1_555 ? 75 AC7 22 HOH L . ? HOH D 214 . ? 1_555 ? 76 AC7 22 HOH L . ? HOH D 222 . ? 1_555 ? 77 AC7 22 HOH L . ? HOH D 223 . ? 1_555 ? 78 AC7 22 HOH L . ? HOH D 225 . ? 1_555 ? 79 AC7 22 HOH L . ? HOH D 232 . ? 1_555 ? 80 AC7 22 HOH L . ? HOH D 238 . ? 1_555 ? 81 AC7 22 HOH L . ? HOH D 244 . ? 1_555 ? 82 AC7 22 HOH L . ? HOH D 247 . ? 1_555 ? 83 AC7 22 HOH L . ? HOH D 248 . ? 1_555 ? 84 AC7 22 HOH L . ? HOH D 251 . ? 1_555 ? 85 AC7 22 HOH L . ? HOH D 252 . ? 1_555 ? 86 AC7 22 HOH L . ? HOH D 259 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AG AG AG N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 CBR BR BR N N 74 CBR P P N N 75 CBR OP1 O N N 76 CBR OP2 O N N 77 CBR "O5'" O N N 78 CBR N1 N N N 79 CBR C6 C N N 80 CBR C2 C N N 81 CBR O2 O N N 82 CBR N3 N N N 83 CBR C4 C N N 84 CBR N4 N N N 85 CBR C5 C N N 86 CBR "C2'" C N N 87 CBR "C5'" C N N 88 CBR "C4'" C N R 89 CBR "O4'" O N N 90 CBR "C1'" C N R 91 CBR "C3'" C N S 92 CBR "O3'" O N N 93 CBR OP3 O N N 94 CBR HOP2 H N N 95 CBR H6 H N N 96 CBR H41 H N N 97 CBR H42 H N N 98 CBR "H2'" H N N 99 CBR "H2''" H N N 100 CBR "H5'" H N N 101 CBR "H5''" H N N 102 CBR "H4'" H N N 103 CBR "H1'" H N N 104 CBR "H3'" H N N 105 CBR "HO3'" H N N 106 CBR HOP3 H N N 107 G OP3 O N N 108 G P P N N 109 G OP1 O N N 110 G OP2 O N N 111 G "O5'" O N N 112 G "C5'" C N N 113 G "C4'" C N R 114 G "O4'" O N N 115 G "C3'" C N S 116 G "O3'" O N N 117 G "C2'" C N R 118 G "O2'" O N N 119 G "C1'" C N R 120 G N9 N Y N 121 G C8 C Y N 122 G N7 N Y N 123 G C5 C Y N 124 G C6 C N N 125 G O6 O N N 126 G N1 N N N 127 G C2 C N N 128 G N2 N N N 129 G N3 N N N 130 G C4 C Y N 131 G HOP3 H N N 132 G HOP2 H N N 133 G "H5'" H N N 134 G "H5''" H N N 135 G "H4'" H N N 136 G "H3'" H N N 137 G "HO3'" H N N 138 G "H2'" H N N 139 G "HO2'" H N N 140 G "H1'" H N N 141 G H8 H N N 142 G H1 H N N 143 G H21 H N N 144 G H22 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CBR BR C5 sing N N 76 CBR P OP1 doub N N 77 CBR P OP2 sing N N 78 CBR P "O5'" sing N N 79 CBR P OP3 sing N N 80 CBR OP2 HOP2 sing N N 81 CBR "O5'" "C5'" sing N N 82 CBR N1 C6 sing N N 83 CBR N1 C2 sing N N 84 CBR N1 "C1'" sing N N 85 CBR C6 C5 doub N N 86 CBR C6 H6 sing N N 87 CBR C2 O2 doub N N 88 CBR C2 N3 sing N N 89 CBR N3 C4 doub N N 90 CBR C4 N4 sing N N 91 CBR C4 C5 sing N N 92 CBR N4 H41 sing N N 93 CBR N4 H42 sing N N 94 CBR "C2'" "C1'" sing N N 95 CBR "C2'" "C3'" sing N N 96 CBR "C2'" "H2'" sing N N 97 CBR "C2'" "H2''" sing N N 98 CBR "C5'" "C4'" sing N N 99 CBR "C5'" "H5'" sing N N 100 CBR "C5'" "H5''" sing N N 101 CBR "C4'" "O4'" sing N N 102 CBR "C4'" "C3'" sing N N 103 CBR "C4'" "H4'" sing N N 104 CBR "O4'" "C1'" sing N N 105 CBR "C1'" "H1'" sing N N 106 CBR "C3'" "O3'" sing N N 107 CBR "C3'" "H3'" sing N N 108 CBR "O3'" "HO3'" sing N N 109 CBR OP3 HOP3 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5AY2 'double helix' 5AY2 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 12 1_555 -0.142 -0.197 0.219 -2.371 -6.928 -2.618 1 A_G1:C12_B A 1 ? B 12 ? 19 1 1 A G 2 1_555 B C 11 1_555 -0.289 -0.171 -0.051 -0.930 -12.118 -1.691 2 A_G2:C11_B A 2 ? B 11 ? 19 1 1 A A 3 1_555 B U 10 1_555 0.049 -0.145 0.171 7.382 -15.098 6.451 3 A_A3:U10_B A 3 ? B 10 ? 20 1 1 A U 5 1_555 B A 8 1_555 -0.006 -0.108 0.299 -12.240 -9.341 3.314 4 A_U5:A8_B A 5 ? B 8 ? 20 1 1 A CBR 6 1_555 B G 7 1_555 0.273 -0.151 -0.032 1.822 -8.517 -1.896 5 A_CBR6:G7_B A 6 ? B 7 ? 19 1 1 A G 7 1_555 B CBR 6 1_555 -0.168 -0.169 0.120 2.139 -9.809 -0.379 6 A_G7:CBR6_B A 7 ? B 6 ? 19 1 1 A A 8 1_555 B U 5 1_555 0.067 -0.143 0.089 1.915 -14.694 3.744 7 A_A8:U5_B A 8 ? B 5 ? 20 1 1 A U 10 1_555 B A 3 1_555 -0.021 -0.141 -0.060 -1.546 -10.951 3.455 8 A_U10:A3_B A 10 ? B 3 ? 20 1 1 A C 11 1_555 B G 2 1_555 0.299 -0.172 -0.044 1.943 -8.544 0.666 9 A_C11:G2_B A 11 ? B 2 ? 19 1 1 A C 12 1_555 B G 1 1_555 0.209 -0.117 0.111 1.511 -7.531 -0.636 10 A_C12:G1_B A 12 ? B 1 ? 19 1 1 C G 1 1_555 D C 12 1_555 -0.306 -0.152 0.331 0.419 -11.199 -1.014 11 C_G1:C12_D C 1 ? D 12 ? 19 1 1 C G 2 1_555 D C 11 1_555 -0.459 -0.065 0.020 3.823 -14.301 0.192 12 C_G2:C11_D C 2 ? D 11 ? 19 1 1 C A 3 1_555 D U 10 1_555 -0.011 -0.157 0.172 8.713 -13.993 0.401 13 C_A3:U10_D C 3 ? D 10 ? 20 1 1 C U 5 1_555 D A 8 1_555 -0.014 -0.103 0.212 -7.216 -13.728 4.219 14 C_U5:A8_D C 5 ? D 8 ? 20 1 1 C CBR 6 1_555 D G 7 1_555 0.216 -0.142 0.093 -0.253 -8.588 -0.108 15 C_CBR6:G7_D C 6 ? D 7 ? 19 1 1 C G 7 1_555 D CBR 6 1_555 -0.152 -0.170 0.024 1.109 -8.103 -0.550 16 C_G7:CBR6_D C 7 ? D 6 ? 19 1 1 C A 8 1_555 D U 5 1_555 0.071 -0.145 -0.047 1.473 -10.761 3.589 17 C_A8:U5_D C 8 ? D 5 ? 20 1 1 C U 10 1_555 D A 3 1_555 -0.021 -0.132 0.002 1.254 -10.956 1.989 18 C_U10:A3_D C 10 ? D 3 ? 20 1 1 C C 11 1_555 D G 2 1_555 0.353 -0.118 -0.114 6.587 -8.641 2.423 19 C_C11:G2_D C 11 ? D 2 ? 19 1 1 C C 12 1_555 D G 1 1_555 0.247 -0.150 0.017 3.800 -11.428 0.610 20 C_C12:G1_D C 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 12 1_555 A G 2 1_555 B C 11 1_555 -0.577 -1.848 3.155 -0.565 7.434 33.750 -4.155 0.892 2.708 12.614 0.959 34.540 1 AA_G1G2:C11C12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A G 2 1_555 B C 11 1_555 A A 3 1_555 B U 10 1_555 0.597 -0.927 2.980 -0.939 6.236 32.146 -2.594 -1.201 2.739 11.127 1.676 32.742 2 AA_G2A3:U10C11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A A 3 1_555 B U 10 1_555 A U 5 1_555 B A 8 1_555 -0.200 -3.200 6.491 -1.428 31.651 69.255 -4.386 0.084 4.865 26.508 1.196 75.327 3 AA_A3U5:A8U10_BB A 3 ? B 10 ? A 5 ? B 8 ? 1 A U 5 1_555 B A 8 1_555 A CBR 6 1_555 B G 7 1_555 -0.363 -1.279 2.931 2.430 4.817 29.201 -3.368 1.149 2.653 9.452 -4.768 29.684 4 AA_U5CBR6:G7A8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A CBR 6 1_555 B G 7 1_555 A G 7 1_555 B CBR 6 1_555 0.209 -1.445 3.064 -1.098 12.065 30.064 -4.414 -0.541 2.319 22.161 2.017 32.361 5 AA_CBR6G7:CBR6G7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A G 7 1_555 B CBR 6 1_555 A A 8 1_555 B U 5 1_555 0.563 -1.656 3.201 0.467 6.465 32.158 -3.970 -0.923 2.831 11.526 -0.833 32.788 6 AA_G7A8:U5CBR6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A A 8 1_555 B U 5 1_555 A U 10 1_555 B A 3 1_555 -0.048 -3.002 6.167 0.440 26.179 65.873 -4.227 0.069 4.831 23.153 -0.389 70.337 7 AA_A8U10:A3U5_BB A 8 ? B 5 ? A 10 ? B 3 ? 1 A U 10 1_555 B A 3 1_555 A C 11 1_555 B G 2 1_555 0.761 -2.166 3.039 3.421 10.650 25.096 -6.704 -0.917 2.050 23.101 -7.420 27.439 8 AA_U10C11:G2A3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A C 11 1_555 B G 2 1_555 A C 12 1_555 B G 1 1_555 0.131 -2.080 3.202 1.071 5.533 32.376 -4.557 -0.061 2.820 9.831 -1.902 32.850 9 AA_C11C12:G1G2_BB A 11 ? B 2 ? A 12 ? B 1 ? 1 C G 1 1_555 D C 12 1_555 C G 2 1_555 D C 11 1_555 -0.394 -1.312 3.130 -1.281 5.879 33.359 -3.126 0.485 2.876 10.138 2.210 33.882 10 CC_G1G2:C11C12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 C G 2 1_555 D C 11 1_555 C A 3 1_555 D U 10 1_555 -0.018 -1.075 3.017 -2.483 5.774 33.495 -2.658 -0.323 2.792 9.911 4.261 34.063 11 CC_G2A3:U10C11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C A 3 1_555 D U 10 1_555 C U 5 1_555 D A 8 1_555 0.161 -3.009 6.390 -1.593 28.894 71.402 -3.996 -0.216 5.046 23.818 1.314 76.315 12 CC_A3U5:A8U10_DD C 3 ? D 10 ? C 5 ? D 8 ? 1 C U 5 1_555 D A 8 1_555 C CBR 6 1_555 D G 7 1_555 -0.468 -1.401 2.990 -0.069 6.425 31.178 -3.580 0.843 2.656 11.798 0.126 31.817 13 CC_U5CBR6:G7A8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C CBR 6 1_555 D G 7 1_555 C G 7 1_555 D CBR 6 1_555 -0.246 -1.493 3.071 -0.282 12.723 29.831 -4.589 0.398 2.264 23.419 0.519 32.375 14 CC_CBR6G7:CBR6G7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C G 7 1_555 D CBR 6 1_555 C A 8 1_555 D U 5 1_555 0.800 -1.756 3.227 1.075 5.919 31.807 -4.137 -1.257 2.886 10.680 -1.940 32.356 15 CC_G7A8:U5CBR6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 C A 8 1_555 D U 5 1_555 C U 10 1_555 D A 3 1_555 -0.184 -3.531 6.101 -0.602 25.031 65.200 -4.660 0.124 4.647 22.391 0.538 69.344 16 CC_A8U10:A3U5_DD C 8 ? D 5 ? C 10 ? D 3 ? 1 C U 10 1_555 D A 3 1_555 C C 11 1_555 D G 2 1_555 0.410 -2.380 3.050 2.152 9.799 21.392 -8.385 -0.438 1.828 24.722 -5.430 23.603 17 CC_U10C11:G2A3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 C C 11 1_555 D G 2 1_555 C C 12 1_555 D G 1 1_555 0.322 -2.130 3.218 0.970 7.415 34.441 -4.533 -0.399 2.723 12.343 -1.615 35.220 18 CC_C11C12:G1G2_DD C 11 ? D 2 ? C 12 ? D 1 ? # _atom_sites.entry_id 5AY2 _atom_sites.fract_transf_matrix[1][1] 0.033921 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021340 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011119 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AG BR C N O P # loop_