data_5DMP # _entry.id 5DMP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DMP pdb_00005dmp 10.2210/pdb5dmp/pdb WWPDB D_1000213448 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-07 2 'Structure model' 1 1 2016-03-30 3 'Structure model' 1 2 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DMP _pdbx_database_status.recvd_initial_deposition_date 2015-09-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brissett, N.C.' 1 'Bartlett, E.J.' 2 'Doherty, A.J.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 2173 _citation.page_last 2186 _citation.title 'Molecular basis for DNA strand displacement by NHEJ repair polymerases.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkv965 _citation.pdbx_database_id_PubMed 26405198 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bartlett, E.J.' 1 ? primary 'Brissett, N.C.' 2 ? primary 'Plocinski, P.' 3 ? primary 'Carlberg, T.' 4 ? primary 'Doherty, A.J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 19062.793 1 ? ? 'UNP residues 30-198' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 7 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'oxido(dioxo)vanadium' 98.940 1 ? ? ? ? 5 water nat water 18.015 90 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IKHPIYVIQKHDASHLHYDLRLEMGGVLKSWAVPKGPSLDPKVKRLAMPTEDHPIGYATFEGVIPEGQYGGGTVMVWDIG TYRNLREEKPEGSRMTIEQSYDQGKIEVFLEGKKLKGSYALIRTGGIEKRGWLFFKMKEPHEGSYEDIEKAAPDSVLTGR TMDEIAKEG ; _entity_poly.pdbx_seq_one_letter_code_can ;IKHPIYVIQKHDASHLHYDLRLEMGGVLKSWAVPKGPSLDPKVKRLAMPTEDHPIGYATFEGVIPEGQYGGGTVMVWDIG TYRNLREEKPEGSRMTIEQSYDQGKIEVFLEGKKLKGSYALIRTGGIEKRGWLFFKMKEPHEGSYEDIEKAAPDSVLTGR TMDEIAKEG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'MAGNESIUM ION' MG 4 'oxido(dioxo)vanadium' VN4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 LYS n 1 3 HIS n 1 4 PRO n 1 5 ILE n 1 6 TYR n 1 7 VAL n 1 8 ILE n 1 9 GLN n 1 10 LYS n 1 11 HIS n 1 12 ASP n 1 13 ALA n 1 14 SER n 1 15 HIS n 1 16 LEU n 1 17 HIS n 1 18 TYR n 1 19 ASP n 1 20 LEU n 1 21 ARG n 1 22 LEU n 1 23 GLU n 1 24 MET n 1 25 GLY n 1 26 GLY n 1 27 VAL n 1 28 LEU n 1 29 LYS n 1 30 SER n 1 31 TRP n 1 32 ALA n 1 33 VAL n 1 34 PRO n 1 35 LYS n 1 36 GLY n 1 37 PRO n 1 38 SER n 1 39 LEU n 1 40 ASP n 1 41 PRO n 1 42 LYS n 1 43 VAL n 1 44 LYS n 1 45 ARG n 1 46 LEU n 1 47 ALA n 1 48 MET n 1 49 PRO n 1 50 THR n 1 51 GLU n 1 52 ASP n 1 53 HIS n 1 54 PRO n 1 55 ILE n 1 56 GLY n 1 57 TYR n 1 58 ALA n 1 59 THR n 1 60 PHE n 1 61 GLU n 1 62 GLY n 1 63 VAL n 1 64 ILE n 1 65 PRO n 1 66 GLU n 1 67 GLY n 1 68 GLN n 1 69 TYR n 1 70 GLY n 1 71 GLY n 1 72 GLY n 1 73 THR n 1 74 VAL n 1 75 MET n 1 76 VAL n 1 77 TRP n 1 78 ASP n 1 79 ILE n 1 80 GLY n 1 81 THR n 1 82 TYR n 1 83 ARG n 1 84 ASN n 1 85 LEU n 1 86 ARG n 1 87 GLU n 1 88 GLU n 1 89 LYS n 1 90 PRO n 1 91 GLU n 1 92 GLY n 1 93 SER n 1 94 ARG n 1 95 MET n 1 96 THR n 1 97 ILE n 1 98 GLU n 1 99 GLN n 1 100 SER n 1 101 TYR n 1 102 ASP n 1 103 GLN n 1 104 GLY n 1 105 LYS n 1 106 ILE n 1 107 GLU n 1 108 VAL n 1 109 PHE n 1 110 LEU n 1 111 GLU n 1 112 GLY n 1 113 LYS n 1 114 LYS n 1 115 LEU n 1 116 LYS n 1 117 GLY n 1 118 SER n 1 119 TYR n 1 120 ALA n 1 121 LEU n 1 122 ILE n 1 123 ARG n 1 124 THR n 1 125 GLY n 1 126 GLY n 1 127 ILE n 1 128 GLU n 1 129 LYS n 1 130 ARG n 1 131 GLY n 1 132 TRP n 1 133 LEU n 1 134 PHE n 1 135 PHE n 1 136 LYS n 1 137 MET n 1 138 LYS n 1 139 GLU n 1 140 PRO n 1 141 HIS n 1 142 GLU n 1 143 GLY n 1 144 SER n 1 145 TYR n 1 146 GLU n 1 147 ASP n 1 148 ILE n 1 149 GLU n 1 150 LYS n 1 151 ALA n 1 152 ALA n 1 153 PRO n 1 154 ASP n 1 155 SER n 1 156 VAL n 1 157 LEU n 1 158 THR n 1 159 GLY n 1 160 ARG n 1 161 THR n 1 162 MET n 1 163 ASP n 1 164 GLU n 1 165 ILE n 1 166 ALA n 1 167 LYS n 1 168 GLU n 1 169 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MCP_2127 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocella paludicola' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 570267 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VN4 non-polymer . 'oxido(dioxo)vanadium' ? 'O3 V -1' 98.940 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 30 30 ILE ILE A . n A 1 2 LYS 2 31 31 LYS LYS A . n A 1 3 HIS 3 32 32 HIS HIS A . n A 1 4 PRO 4 33 33 PRO PRO A . n A 1 5 ILE 5 34 34 ILE ILE A . n A 1 6 TYR 6 35 35 TYR TYR A . n A 1 7 VAL 7 36 36 VAL VAL A . n A 1 8 ILE 8 37 37 ILE ILE A . n A 1 9 GLN 9 38 38 GLN GLN A . n A 1 10 LYS 10 39 39 LYS LYS A . n A 1 11 HIS 11 40 40 HIS HIS A . n A 1 12 ASP 12 41 41 ASP ASP A . n A 1 13 ALA 13 42 42 ALA ALA A . n A 1 14 SER 14 43 43 SER SER A . n A 1 15 HIS 15 44 44 HIS HIS A . n A 1 16 LEU 16 45 45 LEU LEU A . n A 1 17 HIS 17 46 46 HIS HIS A . n A 1 18 TYR 18 47 47 TYR TYR A . n A 1 19 ASP 19 48 48 ASP ASP A . n A 1 20 LEU 20 49 49 LEU LEU A . n A 1 21 ARG 21 50 50 ARG ARG A . n A 1 22 LEU 22 51 51 LEU LEU A . n A 1 23 GLU 23 52 52 GLU GLU A . n A 1 24 MET 24 53 53 MET MET A . n A 1 25 GLY 25 54 54 GLY GLY A . n A 1 26 GLY 26 55 55 GLY GLY A . n A 1 27 VAL 27 56 56 VAL VAL A . n A 1 28 LEU 28 57 57 LEU LEU A . n A 1 29 LYS 29 58 58 LYS LYS A . n A 1 30 SER 30 59 59 SER SER A . n A 1 31 TRP 31 60 60 TRP TRP A . n A 1 32 ALA 32 61 61 ALA ALA A . n A 1 33 VAL 33 62 62 VAL VAL A . n A 1 34 PRO 34 63 63 PRO PRO A . n A 1 35 LYS 35 64 64 LYS LYS A . n A 1 36 GLY 36 65 65 GLY GLY A . n A 1 37 PRO 37 66 66 PRO PRO A . n A 1 38 SER 38 67 67 SER SER A . n A 1 39 LEU 39 68 68 LEU LEU A . n A 1 40 ASP 40 69 69 ASP ASP A . n A 1 41 PRO 41 70 70 PRO PRO A . n A 1 42 LYS 42 71 71 LYS LYS A . n A 1 43 VAL 43 72 72 VAL VAL A . n A 1 44 LYS 44 73 73 LYS LYS A . n A 1 45 ARG 45 74 74 ARG ARG A . n A 1 46 LEU 46 75 75 LEU LEU A . n A 1 47 ALA 47 76 76 ALA ALA A . n A 1 48 MET 48 77 77 MET MET A . n A 1 49 PRO 49 78 78 PRO PRO A . n A 1 50 THR 50 79 79 THR THR A . n A 1 51 GLU 51 80 80 GLU GLU A . n A 1 52 ASP 52 81 81 ASP ASP A . n A 1 53 HIS 53 82 82 HIS HIS A . n A 1 54 PRO 54 83 83 PRO PRO A . n A 1 55 ILE 55 84 84 ILE ILE A . n A 1 56 GLY 56 85 85 GLY GLY A . n A 1 57 TYR 57 86 86 TYR TYR A . n A 1 58 ALA 58 87 87 ALA ALA A . n A 1 59 THR 59 88 88 THR THR A . n A 1 60 PHE 60 89 89 PHE PHE A . n A 1 61 GLU 61 90 90 GLU GLU A . n A 1 62 GLY 62 91 91 GLY GLY A . n A 1 63 VAL 63 92 92 VAL VAL A . n A 1 64 ILE 64 93 93 ILE ILE A . n A 1 65 PRO 65 94 94 PRO PRO A . n A 1 66 GLU 66 95 95 GLU GLU A . n A 1 67 GLY 67 96 96 GLY GLY A . n A 1 68 GLN 68 97 97 GLN GLN A . n A 1 69 TYR 69 98 98 TYR TYR A . n A 1 70 GLY 70 99 99 GLY GLY A . n A 1 71 GLY 71 100 100 GLY GLY A . n A 1 72 GLY 72 101 101 GLY GLY A . n A 1 73 THR 73 102 102 THR THR A . n A 1 74 VAL 74 103 103 VAL VAL A . n A 1 75 MET 75 104 104 MET MET A . n A 1 76 VAL 76 105 105 VAL VAL A . n A 1 77 TRP 77 106 106 TRP TRP A . n A 1 78 ASP 78 107 107 ASP ASP A . n A 1 79 ILE 79 108 108 ILE ILE A . n A 1 80 GLY 80 109 109 GLY GLY A . n A 1 81 THR 81 110 110 THR THR A . n A 1 82 TYR 82 111 111 TYR TYR A . n A 1 83 ARG 83 112 112 ARG ARG A . n A 1 84 ASN 84 113 113 ASN ASN A . n A 1 85 LEU 85 114 114 LEU LEU A . n A 1 86 ARG 86 115 115 ARG ARG A . n A 1 87 GLU 87 116 116 GLU GLU A . n A 1 88 GLU 88 117 117 GLU GLU A . n A 1 89 LYS 89 118 118 LYS LYS A . n A 1 90 PRO 90 119 119 PRO PRO A . n A 1 91 GLU 91 120 120 GLU GLU A . n A 1 92 GLY 92 121 121 GLY GLY A . n A 1 93 SER 93 122 122 SER SER A . n A 1 94 ARG 94 123 123 ARG ARG A . n A 1 95 MET 95 124 124 MET MET A . n A 1 96 THR 96 125 125 THR THR A . n A 1 97 ILE 97 126 126 ILE ILE A . n A 1 98 GLU 98 127 127 GLU GLU A . n A 1 99 GLN 99 128 128 GLN GLN A . n A 1 100 SER 100 129 129 SER SER A . n A 1 101 TYR 101 130 130 TYR TYR A . n A 1 102 ASP 102 131 131 ASP ASP A . n A 1 103 GLN 103 132 132 GLN GLN A . n A 1 104 GLY 104 133 133 GLY GLY A . n A 1 105 LYS 105 134 134 LYS LYS A . n A 1 106 ILE 106 135 135 ILE ILE A . n A 1 107 GLU 107 136 136 GLU GLU A . n A 1 108 VAL 108 137 137 VAL VAL A . n A 1 109 PHE 109 138 138 PHE PHE A . n A 1 110 LEU 110 139 139 LEU LEU A . n A 1 111 GLU 111 140 140 GLU GLU A . n A 1 112 GLY 112 141 141 GLY GLY A . n A 1 113 LYS 113 142 142 LYS LYS A . n A 1 114 LYS 114 143 143 LYS LYS A . n A 1 115 LEU 115 144 144 LEU LEU A . n A 1 116 LYS 116 145 145 LYS LYS A . n A 1 117 GLY 117 146 146 GLY GLY A . n A 1 118 SER 118 147 147 SER SER A . n A 1 119 TYR 119 148 148 TYR TYR A . n A 1 120 ALA 120 149 149 ALA ALA A . n A 1 121 LEU 121 150 150 LEU LEU A . n A 1 122 ILE 122 151 151 ILE ILE A . n A 1 123 ARG 123 152 152 ARG ARG A . n A 1 124 THR 124 153 153 THR THR A . n A 1 125 GLY 125 154 154 GLY GLY A . n A 1 126 GLY 126 155 155 GLY GLY A . n A 1 127 ILE 127 156 156 ILE ILE A . n A 1 128 GLU 128 157 157 GLU GLU A . n A 1 129 LYS 129 158 158 LYS LYS A . n A 1 130 ARG 130 159 159 ARG ARG A . n A 1 131 GLY 131 160 160 GLY GLY A . n A 1 132 TRP 132 161 161 TRP TRP A . n A 1 133 LEU 133 162 162 LEU LEU A . n A 1 134 PHE 134 163 163 PHE PHE A . n A 1 135 PHE 135 164 164 PHE PHE A . n A 1 136 LYS 136 165 165 LYS LYS A . n A 1 137 MET 137 166 166 MET MET A . n A 1 138 LYS 138 167 167 LYS LYS A . n A 1 139 GLU 139 168 168 GLU GLU A . n A 1 140 PRO 140 169 169 PRO PRO A . n A 1 141 HIS 141 170 170 HIS HIS A . n A 1 142 GLU 142 171 171 GLU GLU A . n A 1 143 GLY 143 172 172 GLY GLY A . n A 1 144 SER 144 173 173 SER SER A . n A 1 145 TYR 145 174 174 TYR TYR A . n A 1 146 GLU 146 175 175 GLU GLU A . n A 1 147 ASP 147 176 176 ASP ASP A . n A 1 148 ILE 148 177 177 ILE ILE A . n A 1 149 GLU 149 178 178 GLU GLU A . n A 1 150 LYS 150 179 179 LYS LYS A . n A 1 151 ALA 151 180 180 ALA ALA A . n A 1 152 ALA 152 181 181 ALA ALA A . n A 1 153 PRO 153 182 182 PRO PRO A . n A 1 154 ASP 154 183 183 ASP ASP A . n A 1 155 SER 155 184 184 SER SER A . n A 1 156 VAL 156 185 185 VAL VAL A . n A 1 157 LEU 157 186 186 LEU LEU A . n A 1 158 THR 158 187 187 THR THR A . n A 1 159 GLY 159 188 188 GLY GLY A . n A 1 160 ARG 160 189 189 ARG ARG A . n A 1 161 THR 161 190 190 THR THR A . n A 1 162 MET 162 191 191 MET MET A . n A 1 163 ASP 163 192 192 ASP ASP A . n A 1 164 GLU 164 193 193 GLU GLU A . n A 1 165 ILE 165 194 194 ILE ILE A . n A 1 166 ALA 166 195 195 ALA ALA A . n A 1 167 LYS 167 196 196 LYS LYS A . n A 1 168 GLU 168 197 197 GLU GLU A . n A 1 169 GLY 169 198 198 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 1 EDO EDO A . C 2 EDO 1 202 2 EDO EDO A . D 2 EDO 1 203 3 EDO EDO A . E 2 EDO 1 204 4 EDO EDO A . F 2 EDO 1 205 5 EDO EDO A . G 2 EDO 1 206 6 EDO EDO A . H 2 EDO 1 207 7 EDO EDO A . I 3 MG 1 208 1 MG MG A . J 4 VN4 1 209 1 VN4 VN4 A . K 5 HOH 1 301 87 HOH HOH A . K 5 HOH 2 302 22 HOH HOH A . K 5 HOH 3 303 79 HOH HOH A . K 5 HOH 4 304 43 HOH HOH A . K 5 HOH 5 305 15 HOH HOH A . K 5 HOH 6 306 7 HOH HOH A . K 5 HOH 7 307 26 HOH HOH A . K 5 HOH 8 308 83 HOH HOH A . K 5 HOH 9 309 20 HOH HOH A . K 5 HOH 10 310 63 HOH HOH A . K 5 HOH 11 311 29 HOH HOH A . K 5 HOH 12 312 64 HOH HOH A . K 5 HOH 13 313 37 HOH HOH A . K 5 HOH 14 314 21 HOH HOH A . K 5 HOH 15 315 50 HOH HOH A . K 5 HOH 16 316 58 HOH HOH A . K 5 HOH 17 317 34 HOH HOH A . K 5 HOH 18 318 70 HOH HOH A . K 5 HOH 19 319 12 HOH HOH A . K 5 HOH 20 320 18 HOH HOH A . K 5 HOH 21 321 19 HOH HOH A . K 5 HOH 22 322 21 HOH HOH A . K 5 HOH 23 323 42 HOH HOH A . K 5 HOH 24 324 67 HOH HOH A . K 5 HOH 25 325 30 HOH HOH A . K 5 HOH 26 326 1 HOH HOH A . K 5 HOH 27 327 8 HOH HOH A . K 5 HOH 28 328 54 HOH HOH A . K 5 HOH 29 329 81 HOH HOH A . K 5 HOH 30 330 31 HOH HOH A . K 5 HOH 31 331 17 HOH HOH A . K 5 HOH 32 332 39 HOH HOH A . K 5 HOH 33 333 85 HOH HOH A . K 5 HOH 34 334 65 HOH HOH A . K 5 HOH 35 335 13 HOH HOH A . K 5 HOH 36 336 24 HOH HOH A . K 5 HOH 37 337 57 HOH HOH A . K 5 HOH 38 338 10 HOH HOH A . K 5 HOH 39 339 16 HOH HOH A . K 5 HOH 40 340 28 HOH HOH A . K 5 HOH 41 341 3 HOH HOH A . K 5 HOH 42 342 40 HOH HOH A . K 5 HOH 43 343 47 HOH HOH A . K 5 HOH 44 344 62 HOH HOH A . K 5 HOH 45 345 11 HOH HOH A . K 5 HOH 46 346 35 HOH HOH A . K 5 HOH 47 347 78 HOH HOH A . K 5 HOH 48 348 23 HOH HOH A . K 5 HOH 49 349 3 HOH HOH A . K 5 HOH 50 350 2 HOH HOH A . K 5 HOH 51 351 14 HOH HOH A . K 5 HOH 52 352 49 HOH HOH A . K 5 HOH 53 353 9 HOH HOH A . K 5 HOH 54 354 32 HOH HOH A . K 5 HOH 55 355 76 HOH HOH A . K 5 HOH 56 356 5 HOH HOH A . K 5 HOH 57 357 53 HOH HOH A . K 5 HOH 58 358 75 HOH HOH A . K 5 HOH 59 359 46 HOH HOH A . K 5 HOH 60 360 6 HOH HOH A . K 5 HOH 61 361 4 HOH HOH A . K 5 HOH 62 362 25 HOH HOH A . K 5 HOH 63 363 55 HOH HOH A . K 5 HOH 64 364 27 HOH HOH A . K 5 HOH 65 365 82 HOH HOH A . K 5 HOH 66 366 52 HOH HOH A . K 5 HOH 67 367 16 HOH HOH A . K 5 HOH 68 368 74 HOH HOH A . K 5 HOH 69 369 44 HOH HOH A . K 5 HOH 70 370 68 HOH HOH A . K 5 HOH 71 371 41 HOH HOH A . K 5 HOH 72 372 45 HOH HOH A . K 5 HOH 73 373 56 HOH HOH A . K 5 HOH 74 374 1 HOH HOH A . K 5 HOH 75 375 33 HOH HOH A . K 5 HOH 76 376 80 HOH HOH A . K 5 HOH 77 377 48 HOH HOH A . K 5 HOH 78 378 38 HOH HOH A . K 5 HOH 79 379 72 HOH HOH A . K 5 HOH 80 380 77 HOH HOH A . K 5 HOH 81 381 60 HOH HOH A . K 5 HOH 82 382 61 HOH HOH A . K 5 HOH 83 383 59 HOH HOH A . K 5 HOH 84 384 84 HOH HOH A . K 5 HOH 85 385 66 HOH HOH A . K 5 HOH 86 386 89 HOH HOH A . K 5 HOH 87 387 73 HOH HOH A . K 5 HOH 88 388 69 HOH HOH A . K 5 HOH 89 389 71 HOH HOH A . K 5 HOH 90 390 86 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ILE 30 ? N ? A ILE 1 N 2 1 Y 0 A ILE 30 ? CA ? A ILE 1 CA 3 1 Y 0 A ILE 30 ? CB ? A ILE 1 CB 4 1 Y 0 A ILE 30 ? CG1 ? A ILE 1 CG1 5 1 Y 0 A ILE 30 ? CG2 ? A ILE 1 CG2 6 1 Y 0 A ILE 30 ? CD1 ? A ILE 1 CD1 7 1 Y 0 A HIS 44 ? CB ? A HIS 15 CB 8 1 Y 0 A HIS 44 ? CG ? A HIS 15 CG 9 1 Y 0 A HIS 44 ? ND1 ? A HIS 15 ND1 10 1 Y 0 A HIS 44 ? CD2 ? A HIS 15 CD2 11 1 Y 0 A HIS 44 ? CE1 ? A HIS 15 CE1 12 1 Y 0 A HIS 44 ? NE2 ? A HIS 15 NE2 13 1 Y 0 A GLU 120 ? CB ? A GLU 91 CB 14 1 Y 0 A GLU 120 ? CG ? A GLU 91 CG 15 1 Y 0 A GLU 120 ? CD ? A GLU 91 CD 16 1 Y 0 A GLU 120 ? OE1 ? A GLU 91 OE1 17 1 Y 0 A GLU 120 ? OE2 ? A GLU 91 OE2 18 1 Y 0 A GLU 157 ? CB ? A GLU 128 CB 19 1 Y 0 A GLU 157 ? CG ? A GLU 128 CG 20 1 Y 0 A GLU 157 ? CD ? A GLU 128 CD 21 1 Y 0 A GLU 157 ? OE1 ? A GLU 128 OE1 22 1 Y 0 A GLU 157 ? OE2 ? A GLU 128 OE2 23 1 Y 0 A LYS 158 ? CB ? A LYS 129 CB 24 1 Y 0 A LYS 158 ? CG ? A LYS 129 CG 25 1 Y 0 A LYS 158 ? CD ? A LYS 129 CD 26 1 Y 0 A LYS 158 ? CE ? A LYS 129 CE 27 1 Y 0 A LYS 158 ? NZ ? A LYS 129 NZ 28 1 Y 0 A GLU 171 ? CB ? A GLU 142 CB 29 1 Y 0 A GLU 171 ? CG ? A GLU 142 CG 30 1 Y 0 A GLU 171 ? CD ? A GLU 142 CD 31 1 Y 0 A GLU 171 ? OE1 ? A GLU 142 OE1 32 1 Y 0 A GLU 171 ? OE2 ? A GLU 142 OE2 33 1 Y 0 A GLY 198 ? C ? A GLY 169 C 34 1 Y 0 A GLY 198 ? O ? A GLY 169 O 35 1 Y 0 A GLY 198 ? OXT ? A GLY 169 OXT # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? CrystalClear ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? 3.3.9 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.1.4 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 6 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 7 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5DMP _cell.details ? _cell.formula_units_Z ? _cell.length_a 57.070 _cell.length_a_esd ? _cell.length_b 57.070 _cell.length_b_esd ? _cell.length_c 105.041 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DMP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '200 mM magnesium sulfate, 20% (w/v) PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 300K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-05-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9763 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9763 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DMP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.793 _reflns.d_resolution_low 49.424 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 18976 _reflns.number_obs 18976 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.900 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_netI_over_av_sigmaI 8.170 _reflns.pdbx_netI_over_sigmaI 16.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.056 _reflns.pdbx_Rpim_I_all 0.025 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 95174 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.790 1.890 ? 1.700 13600 ? ? 2759 ? 99.900 ? ? ? ? 0.450 ? ? ? ? ? ? ? ? 4.900 0.450 ? ? 3.200 ? 0.224 0 1 1 ? ? 1.890 2.000 ? 2.900 13285 ? ? 2597 ? 100.000 ? ? ? ? 0.255 ? ? ? ? ? ? ? ? 5.100 0.255 ? ? 5.700 ? 0.124 0 2 1 ? ? 2.000 2.140 ? 5.200 12901 ? ? 2472 ? 100.000 ? ? ? ? 0.144 ? ? ? ? ? ? ? ? 5.200 0.144 ? ? 9.400 ? 0.070 0 3 1 ? ? 2.140 2.310 ? 8.100 11851 ? ? 2286 ? 100.000 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 5.200 0.090 ? ? 13.700 ? 0.044 0 4 1 ? ? 2.310 2.540 ? 9.100 11057 ? ? 2142 ? 100.000 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? 5.200 0.075 ? ? 17.800 ? 0.036 0 5 1 ? ? 2.540 2.840 ? 13.200 9919 ? ? 1931 ? 100.000 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 5.100 0.049 ? ? 22.700 ? 0.024 0 6 1 ? ? 2.840 3.270 ? 16.300 8555 ? ? 1707 ? 100.000 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 5.000 0.035 ? ? 28.000 ? 0.017 0 7 1 ? ? 3.270 4.010 ? 12.900 7135 ? ? 1473 ? 99.600 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 4.800 0.044 ? ? 33.600 ? 0.022 0 8 1 ? ? 4.010 5.670 ? 18.000 4635 ? ? 1079 ? 93.900 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? 4.300 0.034 ? ? 33.900 ? 0.018 0 9 1 ? ? 5.670 44.721 ? 29.300 2236 ? ? 530 ? 76.400 ? ? ? ? 0.022 ? ? ? ? ? ? ? ? 4.200 0.022 ? ? 31.300 ? 0.012 0 10 1 ? ? # _refine.aniso_B[1][1] 0.3800 _refine.aniso_B[1][2] 0.1900 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.3800 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -1.2200 _refine.B_iso_max 87.830 _refine.B_iso_mean 37.4840 _refine.B_iso_min 21.380 _refine.correlation_coeff_Fo_to_Fc 0.9680 _refine.correlation_coeff_Fo_to_Fc_free 0.9610 _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DMP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.793 _refine.ls_d_res_low 49.4200 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17965 _refine.ls_number_reflns_R_free 974 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.5900 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1759 _refine.ls_R_factor_R_free 0.2045 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1744 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.2150 _refine.ls_wR_factor_R_work 0.1838 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3n9b _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1090 _refine.pdbx_overall_ESU_R_Free 0.1060 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.5710 _refine.overall_SU_ML 0.0790 _refine.overall_SU_R_Cruickshank_DPI 0.1092 _refine.overall_SU_R_free 0.1057 _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8475 _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.793 _refine_hist.d_res_low 49.4200 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 90 _refine_hist.number_atoms_total 1464 _refine_hist.pdbx_number_residues_total 168 _refine_hist.pdbx_B_iso_mean_ligand 58.89 _refine_hist.pdbx_B_iso_mean_solvent 48.79 _refine_hist.pdbx_number_atoms_protein 1341 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.020 0.019 1362 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 2.070 1.985 1817 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 12.161 5.000 167 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 31.262 23.571 56 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.832 15.000 239 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 26.018 15.000 8 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.171 0.200 183 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.014 0.021 1012 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 3.663 3.525 671 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 5.053 5.252 837 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 5.099 3.859 691 ? r_scbond_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.7930 _refine_ls_shell.d_res_low 1.8400 _refine_ls_shell.number_reflns_all 1419 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.number_reflns_R_work 1345 _refine_ls_shell.percent_reflns_obs 99.7200 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2870 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2530 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5DMP _struct.title 'Structure of the Archaeal NHEJ Phosphoesterase from Methanocella paludicola.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DMP _struct_keywords.text 'Archaeal Proteins, Biocatalysis, DNA Repair Enzymes, Phosphoric Diester Hydrolases, Phosphoric Monoester Hydrolases, hydrolase' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D1Z0H7_METPS _struct_ref.pdbx_db_accession D1Z0H7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IKHPIYVIQKHDASHLHYDLRLEMGGVLKSWAVPKGPSLDPKVKRLAMPTEDHPIGYATFEGVIPEGQYGGGTVMVWDIG TYRNLREEKPEGSRMTIEQSYDQGKIEVFLEGKKLKGSYALIRTGGIEKRGWLFFKMKEPHEGSYEDIEKAAPDSVLTGR TMDEIAKEG ; _struct_ref.pdbx_align_begin 30 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DMP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 169 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D1Z0H7 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 198 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 30 _struct_ref_seq.pdbx_auth_seq_align_end 198 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1330 ? 1 MORE 6 ? 1 'SSA (A^2)' 9240 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 54 ? PHE A 60 ? PRO A 83 PHE A 89 5 ? 7 HELX_P HELX_P2 AA2 ARG A 86 ? GLU A 88 ? ARG A 115 GLU A 117 5 ? 3 HELX_P HELX_P3 AA3 THR A 96 ? GLY A 104 ? THR A 125 GLY A 133 1 ? 9 HELX_P HELX_P4 AA4 ASP A 147 ? ALA A 152 ? ASP A 176 ALA A 181 1 ? 6 HELX_P HELX_P5 AA5 THR A 161 ? GLY A 169 ? THR A 190 GLY A 198 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? I MG . MG ? ? ? 1_555 J VN4 . O3 ? ? A MG 208 A VN4 209 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc2 metalc ? ? I MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 208 A HOH 302 1_555 ? ? ? ? ? ? ? 2.286 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O3 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id J _pdbx_struct_conn_angle.ptnr1_label_comp_id VN4 _pdbx_struct_conn_angle.ptnr1_label_seq_id . _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id VN4 _pdbx_struct_conn_angle.ptnr1_auth_seq_id 209 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id I _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 208 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id K _pdbx_struct_conn_angle.ptnr3_label_comp_id HOH _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr3_auth_seq_id 302 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 88.2 _pdbx_struct_conn_angle.value_esd ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel AA1 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 62 ? ILE A 64 ? GLY A 91 ILE A 93 AA1 2 GLY A 72 ? ASN A 84 ? GLY A 101 ASN A 113 AA1 3 LYS A 105 ? GLU A 111 ? LYS A 134 GLU A 140 AA1 4 LYS A 116 ? ARG A 123 ? LYS A 145 ARG A 152 AA1 5 TRP A 132 ? LYS A 136 ? TRP A 161 LYS A 165 AA1 6 ARG A 45 ? HIS A 53 ? ARG A 74 HIS A 82 AA1 7 VAL A 27 ? VAL A 33 ? VAL A 56 VAL A 62 AA1 8 LEU A 16 ? MET A 24 ? LEU A 45 MET A 53 AA1 9 ILE A 5 ? ASP A 12 ? ILE A 34 ASP A 41 AA1 10 GLY A 72 ? ASN A 84 ? GLY A 101 ASN A 113 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 64 ? N ILE A 93 O GLY A 72 ? O GLY A 101 AA1 2 3 N THR A 81 ? N THR A 110 O GLU A 111 ? O GLU A 140 AA1 3 4 N LEU A 110 ? N LEU A 139 O GLY A 117 ? O GLY A 146 AA1 4 5 N ALA A 120 ? N ALA A 149 O PHE A 135 ? O PHE A 164 AA1 5 6 O PHE A 134 ? O PHE A 163 N ARG A 45 ? N ARG A 74 AA1 6 7 O MET A 48 ? O MET A 77 N ALA A 32 ? N ALA A 61 AA1 7 8 O VAL A 33 ? O VAL A 62 N TYR A 18 ? N TYR A 47 AA1 8 9 O HIS A 17 ? O HIS A 46 N HIS A 11 ? N HIS A 40 AA1 9 10 N LYS A 10 ? N LYS A 39 O MET A 75 ? O MET A 104 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 201 ? 4 'binding site for residue EDO A 201' AC2 Software A EDO 202 ? 4 'binding site for residue EDO A 202' AC3 Software A EDO 203 ? 8 'binding site for residue EDO A 203' AC4 Software A EDO 204 ? 6 'binding site for residue EDO A 204' AC5 Software A EDO 205 ? 3 'binding site for residue EDO A 205' AC6 Software A EDO 206 ? 5 'binding site for residue EDO A 206' AC7 Software A EDO 207 ? 2 'binding site for residue EDO A 207' AC8 Software A MG 208 ? 5 'binding site for residue MG A 208' AC9 Software A VN4 209 ? 9 'binding site for residue VN4 A 209' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 154 ? ASP A 183 . ? 1_555 ? 2 AC1 4 THR A 161 ? THR A 190 . ? 1_555 ? 3 AC1 4 MET A 162 ? MET A 191 . ? 1_555 ? 4 AC1 4 ASP A 163 ? ASP A 192 . ? 1_555 ? 5 AC2 4 GLU A 88 ? GLU A 117 . ? 4_655 ? 6 AC2 4 LYS A 114 ? LYS A 143 . ? 1_555 ? 7 AC2 4 ASP A 154 ? ASP A 183 . ? 1_555 ? 8 AC2 4 SER A 155 ? SER A 184 . ? 1_555 ? 9 AC3 8 PHE A 109 ? PHE A 138 . ? 1_555 ? 10 AC3 8 LYS A 116 ? LYS A 145 . ? 1_555 ? 11 AC3 8 GLY A 117 ? GLY A 146 . ? 1_555 ? 12 AC3 8 GLU A 139 ? GLU A 168 . ? 1_555 ? 13 AC3 8 ARG A 160 ? ARG A 189 . ? 4_545 ? 14 AC3 8 GLU A 168 ? GLU A 197 . ? 4_545 ? 15 AC3 8 EDO E . ? EDO A 204 . ? 1_555 ? 16 AC3 8 HOH K . ? HOH A 305 . ? 1_555 ? 17 AC4 6 LYS A 116 ? LYS A 145 . ? 1_555 ? 18 AC4 6 LYS A 136 ? LYS A 165 . ? 1_555 ? 19 AC4 6 GLU A 139 ? GLU A 168 . ? 1_555 ? 20 AC4 6 EDO D . ? EDO A 203 . ? 1_555 ? 21 AC4 6 HOH K . ? HOH A 301 . ? 1_555 ? 22 AC4 6 HOH K . ? HOH A 319 . ? 1_555 ? 23 AC5 3 ASN A 84 ? ASN A 113 . ? 1_555 ? 24 AC5 3 GLU A 87 ? GLU A 116 . ? 1_555 ? 25 AC5 3 ILE A 97 ? ILE A 126 . ? 1_555 ? 26 AC6 5 ASP A 52 ? ASP A 81 . ? 1_555 ? 27 AC6 5 HIS A 53 ? HIS A 82 . ? 1_555 ? 28 AC6 5 PRO A 54 ? PRO A 83 . ? 1_555 ? 29 AC6 5 HOH K . ? HOH A 315 . ? 1_555 ? 30 AC6 5 HOH K . ? HOH A 343 . ? 6_665 ? 31 AC7 2 GLU A 146 ? GLU A 175 . ? 1_555 ? 32 AC7 2 ASP A 147 ? ASP A 176 . ? 1_555 ? 33 AC8 5 HIS A 11 ? HIS A 40 . ? 1_555 ? 34 AC8 5 HIS A 17 ? HIS A 46 . ? 1_555 ? 35 AC8 5 ASP A 19 ? ASP A 48 . ? 1_555 ? 36 AC8 5 VN4 J . ? VN4 A 209 . ? 1_555 ? 37 AC8 5 HOH K . ? HOH A 302 . ? 1_555 ? 38 AC9 9 HIS A 11 ? HIS A 40 . ? 1_555 ? 39 AC9 9 ARG A 21 ? ARG A 50 . ? 1_555 ? 40 AC9 9 LYS A 44 ? LYS A 73 . ? 6_665 ? 41 AC9 9 HIS A 53 ? HIS A 82 . ? 1_555 ? 42 AC9 9 TYR A 57 ? TYR A 86 . ? 1_555 ? 43 AC9 9 MG I . ? MG A 208 . ? 1_555 ? 44 AC9 9 HOH K . ? HOH A 310 . ? 1_555 ? 45 AC9 9 HOH K . ? HOH A 312 . ? 6_665 ? 46 AC9 9 HOH K . ? HOH A 313 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 317 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 369 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.79 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA A HIS 44 ? ? CB A HIS 44 ? ? 1.369 1.535 -0.166 0.022 N 2 1 CA A LYS 158 ? ? CB A LYS 158 ? ? 1.308 1.535 -0.227 0.022 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 30 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ILE _pdbx_validate_rmsd_angle.auth_seq_id_2 30 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 O _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ILE _pdbx_validate_rmsd_angle.auth_seq_id_3 30 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 107.33 _pdbx_validate_rmsd_angle.angle_target_value 120.10 _pdbx_validate_rmsd_angle.angle_deviation -12.77 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 42 ? ? -111.70 -138.85 2 1 GLU A 117 ? ? -90.73 58.55 3 1 GLU A 140 ? ? -113.33 77.75 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 HIS _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 32 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 33 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -50.49 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ILE A 30 ? ? -17.82 2 1 HIS A 32 ? ? -12.65 # _pdbx_phasing_MR.entry_id 5DMP _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 32.660 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 44.720 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 44.720 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 EDO C1 C N N 74 EDO O1 O N N 75 EDO C2 C N N 76 EDO O2 O N N 77 EDO H11 H N N 78 EDO H12 H N N 79 EDO HO1 H N N 80 EDO H21 H N N 81 EDO H22 H N N 82 EDO HO2 H N N 83 GLN N N N N 84 GLN CA C N S 85 GLN C C N N 86 GLN O O N N 87 GLN CB C N N 88 GLN CG C N N 89 GLN CD C N N 90 GLN OE1 O N N 91 GLN NE2 N N N 92 GLN OXT O N N 93 GLN H H N N 94 GLN H2 H N N 95 GLN HA H N N 96 GLN HB2 H N N 97 GLN HB3 H N N 98 GLN HG2 H N N 99 GLN HG3 H N N 100 GLN HE21 H N N 101 GLN HE22 H N N 102 GLN HXT H N N 103 GLU N N N N 104 GLU CA C N S 105 GLU C C N N 106 GLU O O N N 107 GLU CB C N N 108 GLU CG C N N 109 GLU CD C N N 110 GLU OE1 O N N 111 GLU OE2 O N N 112 GLU OXT O N N 113 GLU H H N N 114 GLU H2 H N N 115 GLU HA H N N 116 GLU HB2 H N N 117 GLU HB3 H N N 118 GLU HG2 H N N 119 GLU HG3 H N N 120 GLU HE2 H N N 121 GLU HXT H N N 122 GLY N N N N 123 GLY CA C N N 124 GLY C C N N 125 GLY O O N N 126 GLY OXT O N N 127 GLY H H N N 128 GLY H2 H N N 129 GLY HA2 H N N 130 GLY HA3 H N N 131 GLY HXT H N N 132 HIS N N N N 133 HIS CA C N S 134 HIS C C N N 135 HIS O O N N 136 HIS CB C N N 137 HIS CG C Y N 138 HIS ND1 N Y N 139 HIS CD2 C Y N 140 HIS CE1 C Y N 141 HIS NE2 N Y N 142 HIS OXT O N N 143 HIS H H N N 144 HIS H2 H N N 145 HIS HA H N N 146 HIS HB2 H N N 147 HIS HB3 H N N 148 HIS HD1 H N N 149 HIS HD2 H N N 150 HIS HE1 H N N 151 HIS HE2 H N N 152 HIS HXT H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 ILE N N N N 157 ILE CA C N S 158 ILE C C N N 159 ILE O O N N 160 ILE CB C N S 161 ILE CG1 C N N 162 ILE CG2 C N N 163 ILE CD1 C N N 164 ILE OXT O N N 165 ILE H H N N 166 ILE H2 H N N 167 ILE HA H N N 168 ILE HB H N N 169 ILE HG12 H N N 170 ILE HG13 H N N 171 ILE HG21 H N N 172 ILE HG22 H N N 173 ILE HG23 H N N 174 ILE HD11 H N N 175 ILE HD12 H N N 176 ILE HD13 H N N 177 ILE HXT H N N 178 LEU N N N N 179 LEU CA C N S 180 LEU C C N N 181 LEU O O N N 182 LEU CB C N N 183 LEU CG C N N 184 LEU CD1 C N N 185 LEU CD2 C N N 186 LEU OXT O N N 187 LEU H H N N 188 LEU H2 H N N 189 LEU HA H N N 190 LEU HB2 H N N 191 LEU HB3 H N N 192 LEU HG H N N 193 LEU HD11 H N N 194 LEU HD12 H N N 195 LEU HD13 H N N 196 LEU HD21 H N N 197 LEU HD22 H N N 198 LEU HD23 H N N 199 LEU HXT H N N 200 LYS N N N N 201 LYS CA C N S 202 LYS C C N N 203 LYS O O N N 204 LYS CB C N N 205 LYS CG C N N 206 LYS CD C N N 207 LYS CE C N N 208 LYS NZ N N N 209 LYS OXT O N N 210 LYS H H N N 211 LYS H2 H N N 212 LYS HA H N N 213 LYS HB2 H N N 214 LYS HB3 H N N 215 LYS HG2 H N N 216 LYS HG3 H N N 217 LYS HD2 H N N 218 LYS HD3 H N N 219 LYS HE2 H N N 220 LYS HE3 H N N 221 LYS HZ1 H N N 222 LYS HZ2 H N N 223 LYS HZ3 H N N 224 LYS HXT H N N 225 MET N N N N 226 MET CA C N S 227 MET C C N N 228 MET O O N N 229 MET CB C N N 230 MET CG C N N 231 MET SD S N N 232 MET CE C N N 233 MET OXT O N N 234 MET H H N N 235 MET H2 H N N 236 MET HA H N N 237 MET HB2 H N N 238 MET HB3 H N N 239 MET HG2 H N N 240 MET HG3 H N N 241 MET HE1 H N N 242 MET HE2 H N N 243 MET HE3 H N N 244 MET HXT H N N 245 MG MG MG N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 VN4 V V N N 388 VN4 O1 O N N 389 VN4 O2 O N N 390 VN4 O3 O N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 EDO C1 O1 sing N N 70 EDO C1 C2 sing N N 71 EDO C1 H11 sing N N 72 EDO C1 H12 sing N N 73 EDO O1 HO1 sing N N 74 EDO C2 O2 sing N N 75 EDO C2 H21 sing N N 76 EDO C2 H22 sing N N 77 EDO O2 HO2 sing N N 78 GLN N CA sing N N 79 GLN N H sing N N 80 GLN N H2 sing N N 81 GLN CA C sing N N 82 GLN CA CB sing N N 83 GLN CA HA sing N N 84 GLN C O doub N N 85 GLN C OXT sing N N 86 GLN CB CG sing N N 87 GLN CB HB2 sing N N 88 GLN CB HB3 sing N N 89 GLN CG CD sing N N 90 GLN CG HG2 sing N N 91 GLN CG HG3 sing N N 92 GLN CD OE1 doub N N 93 GLN CD NE2 sing N N 94 GLN NE2 HE21 sing N N 95 GLN NE2 HE22 sing N N 96 GLN OXT HXT sing N N 97 GLU N CA sing N N 98 GLU N H sing N N 99 GLU N H2 sing N N 100 GLU CA C sing N N 101 GLU CA CB sing N N 102 GLU CA HA sing N N 103 GLU C O doub N N 104 GLU C OXT sing N N 105 GLU CB CG sing N N 106 GLU CB HB2 sing N N 107 GLU CB HB3 sing N N 108 GLU CG CD sing N N 109 GLU CG HG2 sing N N 110 GLU CG HG3 sing N N 111 GLU CD OE1 doub N N 112 GLU CD OE2 sing N N 113 GLU OE2 HE2 sing N N 114 GLU OXT HXT sing N N 115 GLY N CA sing N N 116 GLY N H sing N N 117 GLY N H2 sing N N 118 GLY CA C sing N N 119 GLY CA HA2 sing N N 120 GLY CA HA3 sing N N 121 GLY C O doub N N 122 GLY C OXT sing N N 123 GLY OXT HXT sing N N 124 HIS N CA sing N N 125 HIS N H sing N N 126 HIS N H2 sing N N 127 HIS CA C sing N N 128 HIS CA CB sing N N 129 HIS CA HA sing N N 130 HIS C O doub N N 131 HIS C OXT sing N N 132 HIS CB CG sing N N 133 HIS CB HB2 sing N N 134 HIS CB HB3 sing N N 135 HIS CG ND1 sing Y N 136 HIS CG CD2 doub Y N 137 HIS ND1 CE1 doub Y N 138 HIS ND1 HD1 sing N N 139 HIS CD2 NE2 sing Y N 140 HIS CD2 HD2 sing N N 141 HIS CE1 NE2 sing Y N 142 HIS CE1 HE1 sing N N 143 HIS NE2 HE2 sing N N 144 HIS OXT HXT sing N N 145 HOH O H1 sing N N 146 HOH O H2 sing N N 147 ILE N CA sing N N 148 ILE N H sing N N 149 ILE N H2 sing N N 150 ILE CA C sing N N 151 ILE CA CB sing N N 152 ILE CA HA sing N N 153 ILE C O doub N N 154 ILE C OXT sing N N 155 ILE CB CG1 sing N N 156 ILE CB CG2 sing N N 157 ILE CB HB sing N N 158 ILE CG1 CD1 sing N N 159 ILE CG1 HG12 sing N N 160 ILE CG1 HG13 sing N N 161 ILE CG2 HG21 sing N N 162 ILE CG2 HG22 sing N N 163 ILE CG2 HG23 sing N N 164 ILE CD1 HD11 sing N N 165 ILE CD1 HD12 sing N N 166 ILE CD1 HD13 sing N N 167 ILE OXT HXT sing N N 168 LEU N CA sing N N 169 LEU N H sing N N 170 LEU N H2 sing N N 171 LEU CA C sing N N 172 LEU CA CB sing N N 173 LEU CA HA sing N N 174 LEU C O doub N N 175 LEU C OXT sing N N 176 LEU CB CG sing N N 177 LEU CB HB2 sing N N 178 LEU CB HB3 sing N N 179 LEU CG CD1 sing N N 180 LEU CG CD2 sing N N 181 LEU CG HG sing N N 182 LEU CD1 HD11 sing N N 183 LEU CD1 HD12 sing N N 184 LEU CD1 HD13 sing N N 185 LEU CD2 HD21 sing N N 186 LEU CD2 HD22 sing N N 187 LEU CD2 HD23 sing N N 188 LEU OXT HXT sing N N 189 LYS N CA sing N N 190 LYS N H sing N N 191 LYS N H2 sing N N 192 LYS CA C sing N N 193 LYS CA CB sing N N 194 LYS CA HA sing N N 195 LYS C O doub N N 196 LYS C OXT sing N N 197 LYS CB CG sing N N 198 LYS CB HB2 sing N N 199 LYS CB HB3 sing N N 200 LYS CG CD sing N N 201 LYS CG HG2 sing N N 202 LYS CG HG3 sing N N 203 LYS CD CE sing N N 204 LYS CD HD2 sing N N 205 LYS CD HD3 sing N N 206 LYS CE NZ sing N N 207 LYS CE HE2 sing N N 208 LYS CE HE3 sing N N 209 LYS NZ HZ1 sing N N 210 LYS NZ HZ2 sing N N 211 LYS NZ HZ3 sing N N 212 LYS OXT HXT sing N N 213 MET N CA sing N N 214 MET N H sing N N 215 MET N H2 sing N N 216 MET CA C sing N N 217 MET CA CB sing N N 218 MET CA HA sing N N 219 MET C O doub N N 220 MET C OXT sing N N 221 MET CB CG sing N N 222 MET CB HB2 sing N N 223 MET CB HB3 sing N N 224 MET CG SD sing N N 225 MET CG HG2 sing N N 226 MET CG HG3 sing N N 227 MET SD CE sing N N 228 MET CE HE1 sing N N 229 MET CE HE2 sing N N 230 MET CE HE3 sing N N 231 MET OXT HXT sing N N 232 PHE N CA sing N N 233 PHE N H sing N N 234 PHE N H2 sing N N 235 PHE CA C sing N N 236 PHE CA CB sing N N 237 PHE CA HA sing N N 238 PHE C O doub N N 239 PHE C OXT sing N N 240 PHE CB CG sing N N 241 PHE CB HB2 sing N N 242 PHE CB HB3 sing N N 243 PHE CG CD1 doub Y N 244 PHE CG CD2 sing Y N 245 PHE CD1 CE1 sing Y N 246 PHE CD1 HD1 sing N N 247 PHE CD2 CE2 doub Y N 248 PHE CD2 HD2 sing N N 249 PHE CE1 CZ doub Y N 250 PHE CE1 HE1 sing N N 251 PHE CE2 CZ sing Y N 252 PHE CE2 HE2 sing N N 253 PHE CZ HZ sing N N 254 PHE OXT HXT sing N N 255 PRO N CA sing N N 256 PRO N CD sing N N 257 PRO N H sing N N 258 PRO CA C sing N N 259 PRO CA CB sing N N 260 PRO CA HA sing N N 261 PRO C O doub N N 262 PRO C OXT sing N N 263 PRO CB CG sing N N 264 PRO CB HB2 sing N N 265 PRO CB HB3 sing N N 266 PRO CG CD sing N N 267 PRO CG HG2 sing N N 268 PRO CG HG3 sing N N 269 PRO CD HD2 sing N N 270 PRO CD HD3 sing N N 271 PRO OXT HXT sing N N 272 SER N CA sing N N 273 SER N H sing N N 274 SER N H2 sing N N 275 SER CA C sing N N 276 SER CA CB sing N N 277 SER CA HA sing N N 278 SER C O doub N N 279 SER C OXT sing N N 280 SER CB OG sing N N 281 SER CB HB2 sing N N 282 SER CB HB3 sing N N 283 SER OG HG sing N N 284 SER OXT HXT sing N N 285 THR N CA sing N N 286 THR N H sing N N 287 THR N H2 sing N N 288 THR CA C sing N N 289 THR CA CB sing N N 290 THR CA HA sing N N 291 THR C O doub N N 292 THR C OXT sing N N 293 THR CB OG1 sing N N 294 THR CB CG2 sing N N 295 THR CB HB sing N N 296 THR OG1 HG1 sing N N 297 THR CG2 HG21 sing N N 298 THR CG2 HG22 sing N N 299 THR CG2 HG23 sing N N 300 THR OXT HXT sing N N 301 TRP N CA sing N N 302 TRP N H sing N N 303 TRP N H2 sing N N 304 TRP CA C sing N N 305 TRP CA CB sing N N 306 TRP CA HA sing N N 307 TRP C O doub N N 308 TRP C OXT sing N N 309 TRP CB CG sing N N 310 TRP CB HB2 sing N N 311 TRP CB HB3 sing N N 312 TRP CG CD1 doub Y N 313 TRP CG CD2 sing Y N 314 TRP CD1 NE1 sing Y N 315 TRP CD1 HD1 sing N N 316 TRP CD2 CE2 doub Y N 317 TRP CD2 CE3 sing Y N 318 TRP NE1 CE2 sing Y N 319 TRP NE1 HE1 sing N N 320 TRP CE2 CZ2 sing Y N 321 TRP CE3 CZ3 doub Y N 322 TRP CE3 HE3 sing N N 323 TRP CZ2 CH2 doub Y N 324 TRP CZ2 HZ2 sing N N 325 TRP CZ3 CH2 sing Y N 326 TRP CZ3 HZ3 sing N N 327 TRP CH2 HH2 sing N N 328 TRP OXT HXT sing N N 329 TYR N CA sing N N 330 TYR N H sing N N 331 TYR N H2 sing N N 332 TYR CA C sing N N 333 TYR CA CB sing N N 334 TYR CA HA sing N N 335 TYR C O doub N N 336 TYR C OXT sing N N 337 TYR CB CG sing N N 338 TYR CB HB2 sing N N 339 TYR CB HB3 sing N N 340 TYR CG CD1 doub Y N 341 TYR CG CD2 sing Y N 342 TYR CD1 CE1 sing Y N 343 TYR CD1 HD1 sing N N 344 TYR CD2 CE2 doub Y N 345 TYR CD2 HD2 sing N N 346 TYR CE1 CZ doub Y N 347 TYR CE1 HE1 sing N N 348 TYR CE2 CZ sing Y N 349 TYR CE2 HE2 sing N N 350 TYR CZ OH sing N N 351 TYR OH HH sing N N 352 TYR OXT HXT sing N N 353 VAL N CA sing N N 354 VAL N H sing N N 355 VAL N H2 sing N N 356 VAL CA C sing N N 357 VAL CA CB sing N N 358 VAL CA HA sing N N 359 VAL C O doub N N 360 VAL C OXT sing N N 361 VAL CB CG1 sing N N 362 VAL CB CG2 sing N N 363 VAL CB HB sing N N 364 VAL CG1 HG11 sing N N 365 VAL CG1 HG12 sing N N 366 VAL CG1 HG13 sing N N 367 VAL CG2 HG21 sing N N 368 VAL CG2 HG22 sing N N 369 VAL CG2 HG23 sing N N 370 VAL OXT HXT sing N N 371 VN4 V O1 doub N N 372 VN4 O2 V sing N N 373 VN4 O3 V doub N N 374 # _pdbx_audit_support.funding_organization 'Biotechnology and Biological Sciences Research Council' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number '(BB/J018643/1)' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3N9B _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5DMP _atom_sites.fract_transf_matrix[1][1] 0.017522 _atom_sites.fract_transf_matrix[1][2] 0.010117 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020233 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009520 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S V # loop_