data_5DUN # _entry.id 5DUN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DUN pdb_00005dun 10.2210/pdb5dun/pdb WWPDB D_1000213838 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DUN _pdbx_database_status.recvd_initial_deposition_date 2015-09-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, A.' 1 'Patel, D.J.' 2 'Micura, R.' 3 'Rajashankar, K.R.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 54 _citation.language ? _citation.page_first 15128 _citation.page_last 15133 _citation.title 'A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201506601 _citation.pdbx_database_id_PubMed 26473980 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kosutic, M.' 1 ? primary 'Neuner, S.' 2 ? primary 'Ren, A.' 3 ? primary 'Flur, S.' 4 ? primary 'Wunderlich, C.' 5 ? primary 'Mairhofer, E.' 6 ? primary 'Vusurovic, N.' 7 ? primary 'Seikowski, J.' 8 ? primary 'Breuker, K.' 9 ? primary 'Hobartner, C.' 10 ? primary 'Patel, D.J.' 11 ? primary 'Kreutz, C.' 12 ? primary 'Micura, R.' 13 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5DUN _cell.details ? _cell.formula_units_Z ? _cell.length_a 46.819 _cell.length_a_esd ? _cell.length_b 46.819 _cell.length_b_esd ? _cell.length_c 143.751 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (54-MER)' 17406.396 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 19 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UUUU(OMU)AAUGAAGCCACAGGCUGUGAGGGUCCUAAGCCCCUAAUUCAGAAGGGAA' _entity_poly.pdbx_seq_one_letter_code_can UUUUUAAUGAAGCCACAGGCUGUGAGGGUCCUAAGCCCCUAAUUCAGAAGGGAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 U n 1 4 U n 1 5 OMU n 1 6 A n 1 7 A n 1 8 U n 1 9 G n 1 10 A n 1 11 A n 1 12 G n 1 13 C n 1 14 C n 1 15 A n 1 16 C n 1 17 A n 1 18 G n 1 19 G n 1 20 C n 1 21 U n 1 22 G n 1 23 U n 1 24 G n 1 25 A n 1 26 G n 1 27 G n 1 28 G n 1 29 U n 1 30 C n 1 31 C n 1 32 U n 1 33 A n 1 34 A n 1 35 G n 1 36 C n 1 37 C n 1 38 C n 1 39 C n 1 40 U n 1 41 A n 1 42 A n 1 43 U n 1 44 U n 1 45 C n 1 46 A n 1 47 G n 1 48 A n 1 49 A n 1 50 G n 1 51 G n 1 52 G n 1 53 A n 1 54 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 54 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5DUN _struct_ref.pdbx_db_accession 5DUN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DUN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 54 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5DUN _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 55 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 55 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DUN _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Calcium acetate, 0.1 M Imidazole pH 8.0, 20% PEG 1000' _exptl_crystal_grow.pdbx_pH_range 8.0-8.2 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-02-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DUN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.64 _reflns.d_resolution_low 143.7 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 5164 _reflns.number_obs 5164 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.0 _reflns.pdbx_Rmerge_I_obs 0.183 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.Rmerge_I_obs 1.611 _reflns_shell.d_res_high 2.64 _reflns_shell.d_res_low 2.73 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_gt ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all 492 _reflns_shell.number_unique_gt ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.pdbx_rejects ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_gt ? _reflns_shell.percent_possible_obs ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DUN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.640 _refine.ls_d_res_low 44.517 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5154 _refine.ls_number_reflns_R_free 240 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.75 _refine.ls_percent_reflns_R_free 4.66 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1969 _refine.ls_R_factor_R_free 0.2523 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1942 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4RGE _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 26.35 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.31 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1151 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1181 _refine_hist.d_res_high 2.640 _refine_hist.d_res_low 44.517 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 1325 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.650 ? 2001 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.382 ? 640 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.071 ? 267 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 ? 54 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.6402 3.3262 . . 118 2374 100.00 . . . 0.2995 . 0.2332 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3262 44.5237 . . 122 2540 100.00 . . . 0.2328 . 0.1789 . . . . . . . . . . # _struct.entry_id 5DUN _struct.title 'The crystal structure of OMe substituted twister ribozyme' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DUN _struct_keywords.text 'OMe, twister, RNA, ribozyme' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 3 ? K N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 4 "O3'" ? ? ? 1_555 A OMU 5 P ? ? A U 4 A OMU 5 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale2 covale both ? A OMU 5 "O3'" ? ? ? 1_555 A A 6 P ? ? A OMU 5 A A 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? metalc1 metalc ? ? A A 6 OP1 ? ? ? 1_555 B MG . MG ? ? A A 6 A MG 101 1_555 ? ? ? ? ? ? ? 2.088 ? ? metalc2 metalc ? ? A A 7 OP2 ? ? ? 1_555 B MG . MG ? ? A A 7 A MG 101 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc3 metalc ? ? A A 7 OP1 ? ? ? 1_555 H MG . MG ? ? A A 7 A MG 107 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc4 metalc ? ? A A 7 "O5'" ? ? ? 1_555 H MG . MG ? ? A A 7 A MG 107 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc5 metalc ? ? A U 8 O4 ? ? ? 1_555 B MG . MG ? ? A U 8 A MG 101 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc6 metalc ? ? A U 8 OP2 ? ? ? 1_555 H MG . MG ? ? A U 8 A MG 107 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc7 metalc ? ? A U 23 O4 ? ? ? 1_555 J K . K ? ? A U 24 A K 109 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc8 metalc ? ? A G 26 O6 ? ? ? 1_555 E MG . MG ? ? A G 27 A MG 104 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc9 metalc ? ? A U 29 O4 ? ? ? 1_555 D MG . MG ? ? A U 30 A MG 103 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc10 metalc ? ? A U 29 OP2 ? ? ? 1_555 G MG . MG ? ? A U 30 A MG 106 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc11 metalc ? ? A C 30 "O3'" ? ? ? 1_555 G MG . MG ? ? A C 31 A MG 106 1_555 ? ? ? ? ? ? ? 2.144 ? ? metalc12 metalc ? ? A C 31 OP1 ? ? ? 1_555 G MG . MG ? ? A C 32 A MG 106 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc13 metalc ? ? A A 34 OP2 ? ? ? 1_555 D MG . MG ? ? A A 35 A MG 103 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc14 metalc ? ? A U 40 OP2 ? ? ? 1_555 I MG . MG ? ? A U 41 A MG 108 3_454 ? ? ? ? ? ? ? 2.115 ? ? metalc15 metalc ? ? A A 41 OP2 ? ? ? 1_555 C MG . MG ? ? A A 42 A MG 102 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc16 metalc ? ? A A 42 OP2 ? ? ? 1_555 C MG . MG ? ? A A 43 A MG 102 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc17 metalc ? ? A G 51 O6 ? ? ? 1_555 F MG . MG ? ? A G 52 A MG 105 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc18 metalc ? ? A A 54 OP2 ? ? ? 1_555 I MG . MG ? ? A A 55 A MG 108 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc19 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 101 A HOH 206 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc20 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 101 A HOH 210 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc21 metalc ? ? B MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 101 A HOH 218 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc22 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc23 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 204 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc24 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 207 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc25 metalc ? ? C MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 102 A HOH 214 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc26 metalc ? ? D MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 103 A HOH 212 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc27 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 202 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc28 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 209 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc29 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 215 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc30 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 217 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc31 metalc ? ? E MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 104 A HOH 220 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc32 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 105 A HOH 211 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc33 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 105 A HOH 216 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc34 metalc ? ? F MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 105 A HOH 219 1_555 ? ? ? ? ? ? ? 2.088 ? ? metalc35 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? A MG 106 A HOH 208 1_555 ? ? ? ? ? ? ? 2.072 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 49 N7 ? ? A U 1 A A 50 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 1 A A 50 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 54 N1 ? ? A U 2 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 54 N6 ? ? A U 2 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 53 N1 ? ? A U 3 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 53 N6 ? ? A U 3 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 48 N7 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog8 hydrog ? ? A U 4 O2 ? ? ? 1_555 A A 48 N6 ? ? A U 4 A A 49 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog9 hydrog ? ? A A 7 N6 ? ? ? 1_555 A G 47 N3 ? ? A A 7 A G 48 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A A 7 N7 ? ? ? 1_555 A G 47 N2 ? ? A A 7 A G 48 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 8 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 8 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 9 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 9 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 9 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 44 N3 ? ? A A 10 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 44 O4 ? ? A A 10 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 43 N3 ? ? A A 11 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 43 O4 ? ? A A 11 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 12 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 12 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 12 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 13 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 13 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 13 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 14 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 14 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 14 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 23 N3 ? ? A A 15 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 23 O4 ? ? A A 15 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 16 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 16 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 16 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 17 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 17 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 17 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 17 A U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 18 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 18 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 18 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 40 O4 ? ? A A 26 A U 41 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog40 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 27 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 27 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 27 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 28 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 28 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 28 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 29 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 29 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 29 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 34 N7 ? ? A U 30 A A 35 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A U 29 O2 ? ? ? 1_555 A A 34 N6 ? ? A U 30 A A 35 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 31 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 31 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 31 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 32 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 32 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 32 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 32 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 33 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 32 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 33 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 33 N1 ? ? ? 1_555 A A 48 N6 ? ? A A 34 A A 49 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog60 hydrog ? ? A A 33 N6 ? ? ? 1_555 A A 48 N1 ? ? A A 34 A A 49 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog61 hydrog ? ? A G 35 N2 ? ? ? 1_555 A A 42 N3 ? ? A G 36 A A 43 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog62 hydrog ? ? A U 40 O2 ? ? ? 1_555 A A 42 N6 ? ? A U 41 A A 43 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 6 'binding site for residue MG A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A MG 103 ? 3 'binding site for residue MG A 103' AC4 Software A MG 104 ? 6 'binding site for residue MG A 104' AC5 Software A MG 105 ? 5 'binding site for residue MG A 105' AC6 Software A MG 106 ? 4 'binding site for residue MG A 106' AC7 Software A MG 107 ? 2 'binding site for residue MG A 107' AC8 Software A MG 108 ? 2 'binding site for residue MG A 108' AC9 Software A K 109 ? 1 'binding site for residue K A 109' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 6 ? A A 6 . ? 1_555 ? 2 AC1 6 A A 7 ? A A 7 . ? 1_555 ? 3 AC1 6 U A 8 ? U A 8 . ? 1_555 ? 4 AC1 6 HOH K . ? HOH A 206 . ? 1_555 ? 5 AC1 6 HOH K . ? HOH A 210 . ? 1_555 ? 6 AC1 6 HOH K . ? HOH A 218 . ? 1_555 ? 7 AC2 6 A A 41 ? A A 42 . ? 1_555 ? 8 AC2 6 A A 42 ? A A 43 . ? 1_555 ? 9 AC2 6 HOH K . ? HOH A 203 . ? 1_555 ? 10 AC2 6 HOH K . ? HOH A 204 . ? 1_555 ? 11 AC2 6 HOH K . ? HOH A 207 . ? 1_555 ? 12 AC2 6 HOH K . ? HOH A 214 . ? 1_555 ? 13 AC3 3 U A 29 ? U A 30 . ? 1_555 ? 14 AC3 3 A A 34 ? A A 35 . ? 1_555 ? 15 AC3 3 HOH K . ? HOH A 212 . ? 1_555 ? 16 AC4 6 G A 26 ? G A 27 . ? 1_555 ? 17 AC4 6 HOH K . ? HOH A 202 . ? 1_555 ? 18 AC4 6 HOH K . ? HOH A 209 . ? 1_555 ? 19 AC4 6 HOH K . ? HOH A 215 . ? 1_555 ? 20 AC4 6 HOH K . ? HOH A 217 . ? 1_555 ? 21 AC4 6 HOH K . ? HOH A 220 . ? 1_555 ? 22 AC5 5 G A 50 ? G A 51 . ? 1_555 ? 23 AC5 5 G A 51 ? G A 52 . ? 1_555 ? 24 AC5 5 HOH K . ? HOH A 211 . ? 1_555 ? 25 AC5 5 HOH K . ? HOH A 216 . ? 1_555 ? 26 AC5 5 HOH K . ? HOH A 219 . ? 1_555 ? 27 AC6 4 U A 29 ? U A 30 . ? 1_555 ? 28 AC6 4 C A 30 ? C A 31 . ? 1_555 ? 29 AC6 4 C A 31 ? C A 32 . ? 1_555 ? 30 AC6 4 HOH K . ? HOH A 208 . ? 1_555 ? 31 AC7 2 A A 7 ? A A 7 . ? 1_555 ? 32 AC7 2 U A 8 ? U A 8 . ? 1_555 ? 33 AC8 2 U A 40 ? U A 41 . ? 4_445 ? 34 AC8 2 A A 54 ? A A 55 . ? 1_555 ? 35 AC9 1 U A 23 ? U A 24 . ? 1_555 ? # _atom_sites.entry_id 5DUN _atom_sites.fract_transf_matrix[1][1] 0.021359 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021359 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006956 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 OMU 5 5 5 OMU OMU A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 C 16 16 16 C C A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 21 21 C C A . n A 1 21 U 21 22 22 U U A . n A 1 22 G 22 23 23 G G A . n A 1 23 U 23 24 24 U U A . n A 1 24 G 24 25 25 G G A . n A 1 25 A 25 26 26 A A A . n A 1 26 G 26 27 27 G G A . n A 1 27 G 27 28 28 G G A . n A 1 28 G 28 29 29 G G A . n A 1 29 U 29 30 30 U U A . n A 1 30 C 30 31 31 C C A . n A 1 31 C 31 32 32 C C A . n A 1 32 U 32 33 33 U U A . n A 1 33 A 33 34 34 A A A . n A 1 34 A 34 35 35 A A A . n A 1 35 G 35 36 36 G G A . n A 1 36 C 36 37 37 C C A . n A 1 37 C 37 38 38 C C A . n A 1 38 C 38 39 39 C C A . n A 1 39 C 39 40 40 C C A . n A 1 40 U 40 41 41 U U A . n A 1 41 A 41 42 42 A A A . n A 1 42 A 42 43 43 A A A . n A 1 43 U 43 44 44 U U A . n A 1 44 U 44 45 45 U U A . n A 1 45 C 45 46 46 C C A . n A 1 46 A 46 47 47 A A A . n A 1 47 G 47 48 48 G G A . n A 1 48 A 48 49 49 A A A . n A 1 49 A 49 50 50 A A A . n A 1 50 G 50 51 51 G G A . n A 1 51 G 51 52 52 G G A . n A 1 52 G 52 53 53 G G A . n A 1 53 A 53 54 54 A A A . n A 1 54 A 54 55 55 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 5 MG MG A . C 2 MG 1 102 9 MG MG A . D 2 MG 1 103 13 MG MG A . E 2 MG 1 104 14 MG MG A . F 2 MG 1 105 15 MG MG A . G 2 MG 1 106 16 MG MG A . H 2 MG 1 107 17 MG MG A . I 2 MG 1 108 19 MG MG A . J 3 K 1 109 1 K K A . K 4 HOH 1 202 14 HOH HOH A . K 4 HOH 2 203 22 HOH HOH A . K 4 HOH 3 204 23 HOH HOH A . K 4 HOH 4 205 19 HOH HOH A . K 4 HOH 5 206 3 HOH HOH A . K 4 HOH 6 207 21 HOH HOH A . K 4 HOH 7 208 4 HOH HOH A . K 4 HOH 8 209 13 HOH HOH A . K 4 HOH 9 210 1 HOH HOH A . K 4 HOH 10 211 16 HOH HOH A . K 4 HOH 11 212 7 HOH HOH A . K 4 HOH 12 213 24 HOH HOH A . K 4 HOH 13 214 20 HOH HOH A . K 4 HOH 14 215 11 HOH HOH A . K 4 HOH 15 216 15 HOH HOH A . K 4 HOH 16 217 12 HOH HOH A . K 4 HOH 17 218 2 HOH HOH A . K 4 HOH 18 219 18 HOH HOH A . K 4 HOH 19 220 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 6 ? A A 6 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 OP2 ? A A 7 ? A A 7 ? 1_555 98.5 ? 2 OP1 ? A A 6 ? A A 6 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O4 ? A U 8 ? A U 8 ? 1_555 98.3 ? 3 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O4 ? A U 8 ? A U 8 ? 1_555 86.8 ? 4 OP1 ? A A 6 ? A A 6 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 173.9 ? 5 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 84.1 ? 6 O4 ? A U 8 ? A U 8 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 206 ? 1_555 76.3 ? 7 OP1 ? A A 6 ? A A 6 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 96.3 ? 8 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 160.9 ? 9 O4 ? A U 8 ? A U 8 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 79.3 ? 10 O ? K HOH . ? A HOH 206 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 210 ? 1_555 80.0 ? 11 OP1 ? A A 6 ? A A 6 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 93.0 ? 12 OP2 ? A A 7 ? A A 7 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 107.1 ? 13 O4 ? A U 8 ? A U 8 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 160.6 ? 14 O ? K HOH . ? A HOH 206 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 91.4 ? 15 O ? K HOH . ? A HOH 210 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? K HOH . ? A HOH 218 ? 1_555 83.9 ? 16 OP1 ? A A 7 ? A A 7 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 "O5'" ? A A 7 ? A A 7 ? 1_555 68.2 ? 17 OP1 ? A A 7 ? A A 7 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 OP2 ? A U 8 ? A U 8 ? 1_555 153.9 ? 18 "O5'" ? A A 7 ? A A 7 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 OP2 ? A U 8 ? A U 8 ? 1_555 101.8 ? 19 O6 ? A G 26 ? A G 27 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 202 ? 1_555 67.6 ? 20 O6 ? A G 26 ? A G 27 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 209 ? 1_555 166.0 ? 21 O ? K HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 209 ? 1_555 123.2 ? 22 O6 ? A G 26 ? A G 27 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 215 ? 1_555 91.4 ? 23 O ? K HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 215 ? 1_555 63.4 ? 24 O ? K HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 215 ? 1_555 101.4 ? 25 O6 ? A G 26 ? A G 27 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 217 ? 1_555 106.5 ? 26 O ? K HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 217 ? 1_555 82.5 ? 27 O ? K HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 217 ? 1_555 68.9 ? 28 O ? K HOH . ? A HOH 215 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 217 ? 1_555 131.9 ? 29 O6 ? A G 26 ? A G 27 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 220 ? 1_555 117.9 ? 30 O ? K HOH . ? A HOH 202 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 220 ? 1_555 51.2 ? 31 O ? K HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 220 ? 1_555 74.7 ? 32 O ? K HOH . ? A HOH 215 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 220 ? 1_555 54.8 ? 33 O ? K HOH . ? A HOH 217 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? K HOH . ? A HOH 220 ? 1_555 77.6 ? 34 O4 ? A U 29 ? A U 30 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 OP2 ? A A 34 ? A A 35 ? 1_555 99.9 ? 35 O4 ? A U 29 ? A U 30 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 212 ? 1_555 84.8 ? 36 OP2 ? A A 34 ? A A 35 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? K HOH . ? A HOH 212 ? 1_555 96.2 ? 37 OP2 ? A U 29 ? A U 30 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 "O3'" ? A C 30 ? A C 31 ? 1_555 123.4 ? 38 OP2 ? A U 29 ? A U 30 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 OP1 ? A C 31 ? A C 32 ? 1_555 155.6 ? 39 "O3'" ? A C 30 ? A C 31 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 OP1 ? A C 31 ? A C 32 ? 1_555 73.9 ? 40 OP2 ? A U 29 ? A U 30 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 208 ? 1_555 99.9 ? 41 "O3'" ? A C 30 ? A C 31 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 208 ? 1_555 126.7 ? 42 OP1 ? A C 31 ? A C 32 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 O ? K HOH . ? A HOH 208 ? 1_555 77.5 ? 43 OP2 ? A U 40 ? A U 41 ? 1_555 MG ? I MG . ? A MG 108 ? 3_454 OP2 ? A A 54 ? A A 55 ? 1_555 23.1 ? 44 OP2 ? A A 41 ? A A 42 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 OP2 ? A A 42 ? A A 43 ? 1_555 104.7 ? 45 OP2 ? A A 41 ? A A 42 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 155.4 ? 46 OP2 ? A A 42 ? A A 43 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 203 ? 1_555 72.0 ? 47 OP2 ? A A 41 ? A A 42 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 85.8 ? 48 OP2 ? A A 42 ? A A 43 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 72.5 ? 49 O ? K HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 204 ? 1_555 69.8 ? 50 OP2 ? A A 41 ? A A 42 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 207 ? 1_555 97.5 ? 51 OP2 ? A A 42 ? A A 43 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 207 ? 1_555 149.6 ? 52 O ? K HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 207 ? 1_555 79.2 ? 53 O ? K HOH . ? A HOH 204 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 207 ? 1_555 88.9 ? 54 OP2 ? A A 41 ? A A 42 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 106.0 ? 55 OP2 ? A A 42 ? A A 43 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 88.5 ? 56 O ? K HOH . ? A HOH 203 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 98.3 ? 57 O ? K HOH . ? A HOH 204 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 159.9 ? 58 O ? K HOH . ? A HOH 207 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? K HOH . ? A HOH 214 ? 1_555 105.2 ? 59 O6 ? A G 51 ? A G 52 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? K HOH . ? A HOH 211 ? 1_555 131.9 ? 60 O6 ? A G 51 ? A G 52 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? K HOH . ? A HOH 216 ? 1_555 110.4 ? 61 O ? K HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? K HOH . ? A HOH 216 ? 1_555 78.4 ? 62 O6 ? A G 51 ? A G 52 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? K HOH . ? A HOH 219 ? 1_555 133.9 ? 63 O ? K HOH . ? A HOH 211 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? K HOH . ? A HOH 219 ? 1_555 93.6 ? 64 O ? K HOH . ? A HOH 216 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? K HOH . ? A HOH 219 ? 1_555 65.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-10-28 2 'Structure model' 1 1 2016-01-27 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' citation 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' pdbx_struct_oper_list 8 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.value' 20 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 202 ? ? O A HOH 220 ? ? 1.79 2 1 O A HOH 215 ? ? O A HOH 220 ? ? 1.91 3 1 O A HOH 202 ? ? O A HOH 215 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A A 6 ? ? "C1'" A A 6 ? ? N9 A A 6 ? ? 113.90 108.50 5.40 0.70 N 2 1 C4 A A 6 ? ? C5 A A 6 ? ? N7 A A 6 ? ? 113.82 110.70 3.12 0.50 N 3 1 C5 A A 6 ? ? N7 A A 6 ? ? C8 A A 6 ? ? 99.82 103.90 -4.08 0.50 N 4 1 N7 A A 6 ? ? C8 A A 6 ? ? N9 A A 6 ? ? 116.92 113.80 3.12 0.50 N 5 1 C6 A A 6 ? ? C5 A A 6 ? ? N7 A A 6 ? ? 128.00 132.30 -4.30 0.70 N 6 1 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 123.07 118.60 4.47 0.60 N 7 1 C8 A A 7 ? ? N9 A A 7 ? ? C4 A A 7 ? ? 108.56 105.80 2.76 0.40 N 8 1 "O4'" A G 19 ? ? "C1'" A G 19 ? ? N9 A G 19 ? ? 115.50 108.50 7.00 0.70 N 9 1 N3 A G 19 ? ? C4 A G 19 ? ? C5 A G 19 ? ? 125.48 128.60 -3.12 0.50 N 10 1 N7 A G 19 ? ? C8 A G 19 ? ? N9 A G 19 ? ? 116.76 113.10 3.66 0.50 N 11 1 C8 A G 19 ? ? N9 A G 19 ? ? C4 A G 19 ? ? 102.98 106.40 -3.42 0.40 N 12 1 C4 A G 27 ? ? C5 A G 27 ? ? N7 A G 27 ? ? 113.96 110.80 3.16 0.40 N 13 1 N1 A G 27 ? ? C6 A G 27 ? ? O6 A G 27 ? ? 123.70 119.90 3.80 0.60 N 14 1 C5 A G 27 ? ? C6 A G 27 ? ? O6 A G 27 ? ? 122.79 128.60 -5.81 0.60 N 15 1 C8 A G 29 ? ? N9 A G 29 ? ? C4 A G 29 ? ? 108.97 106.40 2.57 0.40 N 16 1 N1 A G 52 ? ? C6 A G 52 ? ? O6 A G 52 ? ? 124.39 119.90 4.49 0.60 N # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id G _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 19 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id "O3'" _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id G _pdbx_unobs_or_zero_occ_atoms.label_seq_id 19 _pdbx_unobs_or_zero_occ_atoms.label_atom_id "O3'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 MG MG MG N N 115 OMU N1 N N N 116 OMU C2 C N N 117 OMU N3 N N N 118 OMU C4 C N N 119 OMU C5 C N N 120 OMU C6 C N N 121 OMU O2 O N N 122 OMU O4 O N N 123 OMU "C1'" C N R 124 OMU "C2'" C N R 125 OMU "O2'" O N N 126 OMU CM2 C N N 127 OMU "C3'" C N R 128 OMU "C4'" C N R 129 OMU "O3'" O N N 130 OMU "O4'" O N N 131 OMU "C5'" C N N 132 OMU "O5'" O N N 133 OMU P P N N 134 OMU OP1 O N N 135 OMU OP2 O N N 136 OMU OP3 O N N 137 OMU HN3 H N N 138 OMU H5 H N N 139 OMU H6 H N N 140 OMU "H1'" H N N 141 OMU "H2'" H N N 142 OMU HM21 H N N 143 OMU HM22 H N N 144 OMU HM23 H N N 145 OMU "H3'" H N N 146 OMU "H4'" H N N 147 OMU "HO3'" H N N 148 OMU "H5'" H N N 149 OMU "H5''" H N N 150 OMU HOP2 H N N 151 OMU HOP3 H N N 152 U OP3 O N N 153 U P P N N 154 U OP1 O N N 155 U OP2 O N N 156 U "O5'" O N N 157 U "C5'" C N N 158 U "C4'" C N R 159 U "O4'" O N N 160 U "C3'" C N S 161 U "O3'" O N N 162 U "C2'" C N R 163 U "O2'" O N N 164 U "C1'" C N R 165 U N1 N N N 166 U C2 C N N 167 U O2 O N N 168 U N3 N N N 169 U C4 C N N 170 U O4 O N N 171 U C5 C N N 172 U C6 C N N 173 U HOP3 H N N 174 U HOP2 H N N 175 U "H5'" H N N 176 U "H5''" H N N 177 U "H4'" H N N 178 U "H3'" H N N 179 U "HO3'" H N N 180 U "H2'" H N N 181 U "HO2'" H N N 182 U "H1'" H N N 183 U H3 H N N 184 U H5 H N N 185 U H6 H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 OMU N1 C2 sing N N 118 OMU N1 C6 sing N N 119 OMU N1 "C1'" sing N N 120 OMU C2 N3 sing N N 121 OMU C2 O2 doub N N 122 OMU N3 C4 sing N N 123 OMU N3 HN3 sing N N 124 OMU C4 C5 sing N N 125 OMU C4 O4 doub N N 126 OMU C5 C6 doub N N 127 OMU C5 H5 sing N N 128 OMU C6 H6 sing N N 129 OMU "C1'" "C2'" sing N N 130 OMU "C1'" "O4'" sing N N 131 OMU "C1'" "H1'" sing N N 132 OMU "C2'" "O2'" sing N N 133 OMU "C2'" "C3'" sing N N 134 OMU "C2'" "H2'" sing N N 135 OMU "O2'" CM2 sing N N 136 OMU CM2 HM21 sing N N 137 OMU CM2 HM22 sing N N 138 OMU CM2 HM23 sing N N 139 OMU "C3'" "C4'" sing N N 140 OMU "C3'" "O3'" sing N N 141 OMU "C3'" "H3'" sing N N 142 OMU "C4'" "O4'" sing N N 143 OMU "C4'" "C5'" sing N N 144 OMU "C4'" "H4'" sing N N 145 OMU "O3'" "HO3'" sing N N 146 OMU "C5'" "O5'" sing N N 147 OMU "C5'" "H5'" sing N N 148 OMU "C5'" "H5''" sing N N 149 OMU "O5'" P sing N N 150 OMU P OP1 doub N N 151 OMU P OP2 sing N N 152 OMU P OP3 sing N N 153 OMU OP2 HOP2 sing N N 154 OMU OP3 HOP3 sing N N 155 U OP3 P sing N N 156 U OP3 HOP3 sing N N 157 U P OP1 doub N N 158 U P OP2 sing N N 159 U P "O5'" sing N N 160 U OP2 HOP2 sing N N 161 U "O5'" "C5'" sing N N 162 U "C5'" "C4'" sing N N 163 U "C5'" "H5'" sing N N 164 U "C5'" "H5''" sing N N 165 U "C4'" "O4'" sing N N 166 U "C4'" "C3'" sing N N 167 U "C4'" "H4'" sing N N 168 U "O4'" "C1'" sing N N 169 U "C3'" "O3'" sing N N 170 U "C3'" "C2'" sing N N 171 U "C3'" "H3'" sing N N 172 U "O3'" "HO3'" sing N N 173 U "C2'" "O2'" sing N N 174 U "C2'" "C1'" sing N N 175 U "C2'" "H2'" sing N N 176 U "O2'" "HO2'" sing N N 177 U "C1'" N1 sing N N 178 U "C1'" "H1'" sing N N 179 U N1 C2 sing N N 180 U N1 C6 sing N N 181 U C2 O2 doub N N 182 U C2 N3 sing N N 183 U N3 C4 sing N N 184 U N3 H3 sing N N 185 U C4 O4 doub N N 186 U C4 C5 sing N N 187 U C5 C6 doub N N 188 U C5 H5 sing N N 189 U C6 H6 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5DUN 'double helix' 5DUN 'a-form double helix' 5DUN 'hairpin loop' 5DUN 'bulge loop' 5DUN 'mismatched base pair' 5DUN 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 2 1_555 A A 54 1_555 -0.178 -0.002 0.257 18.327 -19.531 -4.849 1 A_U2:A55_A A 2 ? A 55 ? 20 1 1 A U 3 1_555 A A 53 1_555 -0.082 0.002 -0.056 25.485 -19.892 6.822 2 A_U3:A54_A A 3 ? A 54 ? 20 1 1 A C 30 1_555 A G 51 1_555 -0.841 0.009 0.012 -4.329 -8.861 3.643 3 A_C31:G52_A A 31 ? A 52 ? 19 1 1 A C 31 1_555 A G 50 1_555 0.051 -0.005 -0.118 -6.213 0.778 2.106 4 A_C32:G51_A A 32 ? A 51 ? 19 1 1 A U 32 1_555 A A 49 1_555 0.082 0.002 -0.243 14.363 -0.171 2.578 5 A_U33:A50_A A 33 ? A 50 ? 20 1 1 A A 33 1_555 A A 48 1_555 -1.629 -0.957 0.489 13.044 -15.710 176.322 6 A_A34:A49_A A 34 ? A 49 ? 1 2 1 A A 7 1_555 A G 47 1_555 -6.898 -4.607 0.128 12.740 -17.740 -10.703 7 A_A7:G48_A A 7 ? A 48 ? 11 10 1 A U 8 1_555 A A 46 1_555 0.144 -0.128 0.382 4.269 -19.096 3.409 8 A_U8:A47_A A 8 ? A 47 ? 20 1 1 A G 9 1_555 A C 45 1_555 -0.140 -0.385 0.052 -4.062 -17.259 1.394 9 A_G9:C46_A A 9 ? A 46 ? 19 1 1 A A 10 1_555 A U 44 1_555 -0.217 -0.337 0.499 0.427 -17.180 -0.231 10 A_A10:U45_A A 10 ? A 45 ? 20 1 1 A A 11 1_555 A U 43 1_555 0.361 -0.104 0.002 -2.658 -1.418 2.723 11 A_A11:U44_A A 11 ? A 44 ? 20 1 1 A G 12 1_555 A C 36 1_555 0.210 -0.267 0.323 3.478 -12.175 2.796 12 A_G12:C37_A A 12 ? A 37 ? 19 1 1 A C 13 1_555 A G 35 1_555 -0.148 -0.158 0.010 4.219 -20.299 2.888 13 A_C13:G36_A A 13 ? A 36 ? 19 1 1 A C 14 1_555 A G 24 1_555 0.181 -0.143 0.531 -3.085 -10.245 0.521 14 A_C14:G25_A A 14 ? A 25 ? 19 1 1 A A 15 1_555 A U 23 1_555 0.012 -0.264 0.024 5.196 -14.457 3.088 15 A_A15:U24_A A 15 ? A 24 ? 20 1 1 A C 16 1_555 A G 22 1_555 -0.104 -0.271 -0.023 2.361 -9.142 1.158 16 A_C16:G23_A A 16 ? A 23 ? 19 1 1 A A 17 1_555 A U 21 1_555 0.499 -0.007 -0.222 -5.971 -15.490 -0.612 17 A_A17:U22_A A 17 ? A 22 ? 20 1 1 A G 18 1_555 A C 20 1_555 -1.092 -0.510 0.207 -5.329 -21.838 3.768 18 A_G18:C21_A A 18 ? A 21 ? 19 1 1 A A 25 1_555 A U 40 1_555 0.141 -3.594 -0.301 10.598 -3.650 158.337 19 A_A26:U41_A A 26 ? A 41 ? ? ? 1 A G 26 1_555 A C 39 1_555 0.082 -0.187 0.038 -1.678 -8.775 -4.827 20 A_G27:C40_A A 27 ? A 40 ? 19 1 1 A G 27 1_555 A C 38 1_555 -0.195 -0.090 0.200 4.689 -7.078 8.975 21 A_G28:C39_A A 28 ? A 39 ? 19 1 1 A G 28 1_555 A C 37 1_555 -0.123 -0.143 0.045 -11.478 -17.726 4.738 22 A_G29:C38_A A 29 ? A 38 ? 19 1 1 A U 29 1_555 A A 34 1_555 4.399 -2.616 0.044 -11.621 4.115 -90.205 23 A_U30:A35_A A 30 ? A 35 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 2 1_555 A A 54 1_555 A U 3 1_555 A A 53 1_555 0.528 -1.240 3.076 -1.264 8.215 30.427 -3.644 -1.182 2.636 15.298 2.354 31.516 1 AA_U2U3:A54A55_AA A 2 ? A 55 ? A 3 ? A 54 ? 1 A U 3 1_555 A A 53 1_555 A C 30 1_555 A G 51 1_555 -1.544 -2.440 6.638 -10.497 28.206 79.504 -3.149 0.658 5.816 21.371 7.953 84.118 2 AA_U3C31:G52A54_AA A 3 ? A 54 ? A 31 ? A 52 ? 1 A C 30 1_555 A G 51 1_555 A C 31 1_555 A G 50 1_555 -0.579 -2.067 3.200 0.301 9.683 34.726 -4.577 0.975 2.546 15.845 -0.492 36.012 3 AA_C31C32:G51G52_AA A 31 ? A 52 ? A 32 ? A 51 ? 1 A C 31 1_555 A G 50 1_555 A U 32 1_555 A A 49 1_555 0.459 -1.660 2.911 2.456 4.909 26.691 -4.572 -0.451 2.601 10.493 -5.250 27.240 4 AA_C32U33:A50G51_AA A 32 ? A 51 ? A 33 ? A 50 ? 1 A U 32 1_555 A A 49 1_555 A A 33 1_555 A A 48 1_555 -0.252 -3.749 0.923 -144.902 98.076 -39.731 1.282 -1.004 2.094 -49.968 -73.825 -175.272 5 AA_U33A34:A49A50_AA A 33 ? A 50 ? A 34 ? A 49 ? 1 A A 33 1_555 A A 48 1_555 A A 7 1_555 A G 47 1_555 2.722 -4.777 0.749 147.004 -71.669 16.468 -1.389 0.724 4.601 -38.920 -79.831 163.715 6 AA_A34A7:G48A49_AA A 34 ? A 49 ? A 7 ? A 48 ? 1 A A 7 1_555 A G 47 1_555 A U 8 1_555 A A 46 1_555 0.803 -0.834 3.819 -7.723 5.575 69.735 -0.950 -1.010 3.657 4.853 6.723 70.300 7 AA_A7U8:A47G48_AA A 7 ? A 48 ? A 8 ? A 47 ? 1 A U 8 1_555 A A 46 1_555 A G 9 1_555 A C 45 1_555 -0.983 -1.738 3.132 1.032 13.594 27.680 -5.488 2.020 2.037 26.475 -2.010 30.796 8 AA_U8G9:C46A47_AA A 8 ? A 47 ? A 9 ? A 46 ? 1 A G 9 1_555 A C 45 1_555 A A 10 1_555 A U 44 1_555 0.252 -0.947 2.999 -2.921 8.359 33.445 -2.731 -0.822 2.661 14.217 4.968 34.565 9 AA_G9A10:U45C46_AA A 9 ? A 46 ? A 10 ? A 45 ? 1 A A 10 1_555 A U 44 1_555 A A 11 1_555 A U 43 1_555 0.314 -0.574 3.391 7.150 0.907 34.919 -1.075 0.573 3.372 1.492 -11.761 35.632 10 AA_A10A11:U44U45_AA A 10 ? A 45 ? A 11 ? A 44 ? 1 A A 11 1_555 A U 43 1_555 A G 12 1_555 A C 36 1_555 0.569 -2.614 2.975 -0.937 11.372 22.917 -8.246 -1.479 1.503 26.607 2.193 25.566 11 AA_A11G12:C37U44_AA A 11 ? A 44 ? A 12 ? A 37 ? 1 A G 12 1_555 A C 36 1_555 A C 13 1_555 A G 35 1_555 0.320 -1.661 3.144 4.011 -1.781 35.604 -2.448 0.042 3.237 -2.899 -6.528 35.865 12 AA_G12C13:G36C37_AA A 12 ? A 37 ? A 13 ? A 36 ? 1 A C 13 1_555 A G 35 1_555 A C 14 1_555 A G 24 1_555 -1.270 -1.954 3.504 -8.149 10.860 27.906 -5.797 0.773 2.820 21.016 15.770 30.974 13 AA_C13C14:G25G36_AA A 13 ? A 36 ? A 14 ? A 25 ? 1 A C 14 1_555 A G 24 1_555 A A 15 1_555 A U 23 1_555 -0.292 -1.201 2.945 0.666 11.176 29.102 -4.019 0.650 2.329 21.273 -1.267 31.138 14 AA_C14A15:U24G25_AA A 14 ? A 25 ? A 15 ? A 24 ? 1 A A 15 1_555 A U 23 1_555 A C 16 1_555 A G 22 1_555 -0.147 -1.072 3.329 -1.707 8.517 32.051 -3.277 -0.024 2.959 15.082 3.023 33.177 15 AA_A15C16:G23U24_AA A 15 ? A 24 ? A 16 ? A 23 ? 1 A C 16 1_555 A G 22 1_555 A A 17 1_555 A U 21 1_555 0.501 -1.575 3.441 3.799 8.400 34.515 -3.792 -0.264 3.023 13.854 -6.266 35.689 16 AA_C16A17:U22G23_AA A 16 ? A 23 ? A 17 ? A 22 ? 1 A A 17 1_555 A U 21 1_555 A G 18 1_555 A C 20 1_555 0.771 -2.021 3.036 3.177 13.585 23.873 -6.837 -1.009 1.740 29.803 -6.970 27.600 17 AA_A17G18:C21U22_AA A 17 ? A 22 ? A 18 ? A 21 ? 1 A A 25 1_555 A U 40 1_555 A G 26 1_555 A C 39 1_555 0.551 -1.182 3.282 0.914 -3.943 128.581 -0.625 -0.299 3.303 -2.188 -0.507 128.615 18 AA_A26G27:C40U41_AA A 26 ? A 41 ? A 27 ? A 40 ? 1 A G 26 1_555 A C 39 1_555 A G 27 1_555 A C 38 1_555 0.196 -1.978 2.966 -4.223 9.170 28.163 -5.378 -1.091 2.177 18.123 8.347 29.883 19 AA_G27G28:C39C40_AA A 27 ? A 40 ? A 28 ? A 39 ? 1 A G 27 1_555 A C 38 1_555 A G 28 1_555 A C 37 1_555 0.552 -2.037 3.416 2.859 16.087 30.301 -5.733 -0.529 2.138 28.335 -5.036 34.335 20 AA_G28G29:C38C39_AA A 28 ? A 39 ? A 29 ? A 38 ? 1 A G 28 1_555 A C 37 1_555 A U 29 1_555 A A 34 1_555 -1.253 -2.212 3.084 5.603 0.140 91.072 -1.551 0.979 3.018 0.098 -3.922 91.206 21 AA_G29U30:A35C38_AA A 29 ? A 38 ? A 30 ? A 35 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'POTASSIUM ION' K 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4RGE _pdbx_initial_refinement_model.details ? #