data_5DYX # _entry.id 5DYX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5DYX pdb_00005dyx 10.2210/pdb5dyx/pdb WWPDB D_1000214054 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-16 2 'Structure model' 1 1 2016-03-30 3 'Structure model' 1 2 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' diffrn_radiation_wavelength 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5DYX _pdbx_database_status.recvd_initial_deposition_date 2015-09-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5DYU _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lolli, G.' 1 'Caflisch, A.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 800 _citation.page_last 807 _citation.title 'High-Throughput Fragment Docking into the BAZ2B Bromodomain: Efficient in Silico Screening for X-Ray Crystallography.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.5b00914 _citation.pdbx_database_id_PubMed 26942307 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lolli, G.' 1 ? primary 'Caflisch, A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain adjacent to zinc finger domain protein 2B' 13531.574 1 ? ? 'Bromodomain (residues 2054-2168)' ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? 3 water nat water 18.015 127 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name hWALp4 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKV ; _entity_poly.pdbx_seq_one_letter_code_can ;SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 SER n 1 4 VAL n 1 5 LYS n 1 6 LYS n 1 7 PRO n 1 8 LYS n 1 9 ARG n 1 10 ASP n 1 11 ASP n 1 12 SER n 1 13 LYS n 1 14 ASP n 1 15 LEU n 1 16 ALA n 1 17 LEU n 1 18 CYS n 1 19 SER n 1 20 MET n 1 21 ILE n 1 22 LEU n 1 23 THR n 1 24 GLU n 1 25 MET n 1 26 GLU n 1 27 THR n 1 28 HIS n 1 29 GLU n 1 30 ASP n 1 31 ALA n 1 32 TRP n 1 33 PRO n 1 34 PHE n 1 35 LEU n 1 36 LEU n 1 37 PRO n 1 38 VAL n 1 39 ASN n 1 40 LEU n 1 41 LYS n 1 42 LEU n 1 43 VAL n 1 44 PRO n 1 45 GLY n 1 46 TYR n 1 47 LYS n 1 48 LYS n 1 49 VAL n 1 50 ILE n 1 51 LYS n 1 52 LYS n 1 53 PRO n 1 54 MET n 1 55 ASP n 1 56 PHE n 1 57 SER n 1 58 THR n 1 59 ILE n 1 60 ARG n 1 61 GLU n 1 62 LYS n 1 63 LEU n 1 64 SER n 1 65 SER n 1 66 GLY n 1 67 GLN n 1 68 TYR n 1 69 PRO n 1 70 ASN n 1 71 LEU n 1 72 GLU n 1 73 THR n 1 74 PHE n 1 75 ALA n 1 76 LEU n 1 77 ASP n 1 78 VAL n 1 79 ARG n 1 80 LEU n 1 81 VAL n 1 82 PHE n 1 83 ASP n 1 84 ASN n 1 85 CYS n 1 86 GLU n 1 87 THR n 1 88 PHE n 1 89 ASN n 1 90 GLU n 1 91 ASP n 1 92 ASP n 1 93 SER n 1 94 ASP n 1 95 ILE n 1 96 GLY n 1 97 ARG n 1 98 ALA n 1 99 GLY n 1 100 HIS n 1 101 ASN n 1 102 MET n 1 103 ARG n 1 104 LYS n 1 105 TYR n 1 106 PHE n 1 107 GLU n 1 108 LYS n 1 109 LYS n 1 110 TRP n 1 111 THR n 1 112 ASP n 1 113 THR n 1 114 PHE n 1 115 LYS n 1 116 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 116 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BAZ2B, KIAA1476' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1856 1856 SER SER A . n A 1 2 MET 2 1857 1857 MET MET A . n A 1 3 SER 3 1858 1858 SER SER A . n A 1 4 VAL 4 1859 1859 VAL VAL A . n A 1 5 LYS 5 1860 1860 LYS LYS A . n A 1 6 LYS 6 1861 1861 LYS LYS A . n A 1 7 PRO 7 1862 1862 PRO PRO A . n A 1 8 LYS 8 1863 1863 LYS LYS A . n A 1 9 ARG 9 1864 1864 ARG ARG A . n A 1 10 ASP 10 1865 1865 ASP ASP A . n A 1 11 ASP 11 1866 1866 ASP ASP A . n A 1 12 SER 12 1867 1867 SER SER A . n A 1 13 LYS 13 1868 1868 LYS LYS A . n A 1 14 ASP 14 1869 1869 ASP ASP A . n A 1 15 LEU 15 1870 1870 LEU LEU A . n A 1 16 ALA 16 1871 1871 ALA ALA A . n A 1 17 LEU 17 1872 1872 LEU LEU A . n A 1 18 CYS 18 1873 1873 CYS CYS A . n A 1 19 SER 19 1874 1874 SER SER A . n A 1 20 MET 20 1875 1875 MET MET A . n A 1 21 ILE 21 1876 1876 ILE ILE A . n A 1 22 LEU 22 1877 1877 LEU LEU A . n A 1 23 THR 23 1878 1878 THR THR A . n A 1 24 GLU 24 1879 1879 GLU GLU A . n A 1 25 MET 25 1880 1880 MET MET A . n A 1 26 GLU 26 1881 1881 GLU GLU A . n A 1 27 THR 27 1882 1882 THR THR A . n A 1 28 HIS 28 1883 1883 HIS HIS A . n A 1 29 GLU 29 1884 1884 GLU GLU A . n A 1 30 ASP 30 1885 1885 ASP ASP A . n A 1 31 ALA 31 1886 1886 ALA ALA A . n A 1 32 TRP 32 1887 1887 TRP TRP A . n A 1 33 PRO 33 1888 1888 PRO PRO A . n A 1 34 PHE 34 1889 1889 PHE PHE A . n A 1 35 LEU 35 1890 1890 LEU LEU A . n A 1 36 LEU 36 1891 1891 LEU LEU A . n A 1 37 PRO 37 1892 1892 PRO PRO A . n A 1 38 VAL 38 1893 1893 VAL VAL A . n A 1 39 ASN 39 1894 1894 ASN ASN A . n A 1 40 LEU 40 1895 1895 LEU LEU A . n A 1 41 LYS 41 1896 1896 LYS LYS A . n A 1 42 LEU 42 1897 1897 LEU LEU A . n A 1 43 VAL 43 1898 1898 VAL VAL A . n A 1 44 PRO 44 1899 1899 PRO PRO A . n A 1 45 GLY 45 1900 1900 GLY GLY A . n A 1 46 TYR 46 1901 1901 TYR TYR A . n A 1 47 LYS 47 1902 1902 LYS LYS A . n A 1 48 LYS 48 1903 1903 LYS LYS A . n A 1 49 VAL 49 1904 1904 VAL VAL A . n A 1 50 ILE 50 1905 1905 ILE ILE A . n A 1 51 LYS 51 1906 1906 LYS LYS A . n A 1 52 LYS 52 1907 1907 LYS LYS A . n A 1 53 PRO 53 1908 1908 PRO PRO A . n A 1 54 MET 54 1909 1909 MET MET A . n A 1 55 ASP 55 1910 1910 ASP ASP A . n A 1 56 PHE 56 1911 1911 PHE PHE A . n A 1 57 SER 57 1912 1912 SER SER A . n A 1 58 THR 58 1913 1913 THR THR A . n A 1 59 ILE 59 1914 1914 ILE ILE A . n A 1 60 ARG 60 1915 1915 ARG ARG A . n A 1 61 GLU 61 1916 1916 GLU GLU A . n A 1 62 LYS 62 1917 1917 LYS LYS A . n A 1 63 LEU 63 1918 1918 LEU LEU A . n A 1 64 SER 64 1919 1919 SER SER A . n A 1 65 SER 65 1920 1920 SER SER A . n A 1 66 GLY 66 1921 1921 GLY GLY A . n A 1 67 GLN 67 1922 1922 GLN GLN A . n A 1 68 TYR 68 1923 1923 TYR TYR A . n A 1 69 PRO 69 1924 1924 PRO PRO A . n A 1 70 ASN 70 1925 1925 ASN ASN A . n A 1 71 LEU 71 1926 1926 LEU LEU A . n A 1 72 GLU 72 1927 1927 GLU GLU A . n A 1 73 THR 73 1928 1928 THR THR A . n A 1 74 PHE 74 1929 1929 PHE PHE A . n A 1 75 ALA 75 1930 1930 ALA ALA A . n A 1 76 LEU 76 1931 1931 LEU LEU A . n A 1 77 ASP 77 1932 1932 ASP ASP A . n A 1 78 VAL 78 1933 1933 VAL VAL A . n A 1 79 ARG 79 1934 1934 ARG ARG A . n A 1 80 LEU 80 1935 1935 LEU LEU A . n A 1 81 VAL 81 1936 1936 VAL VAL A . n A 1 82 PHE 82 1937 1937 PHE PHE A . n A 1 83 ASP 83 1938 1938 ASP ASP A . n A 1 84 ASN 84 1939 1939 ASN ASN A . n A 1 85 CYS 85 1940 1940 CYS CYS A . n A 1 86 GLU 86 1941 1941 GLU GLU A . n A 1 87 THR 87 1942 1942 THR THR A . n A 1 88 PHE 88 1943 1943 PHE PHE A . n A 1 89 ASN 89 1944 1944 ASN ASN A . n A 1 90 GLU 90 1945 1945 GLU GLU A . n A 1 91 ASP 91 1946 1946 ASP ASP A . n A 1 92 ASP 92 1947 1947 ASP ASP A . n A 1 93 SER 93 1948 1948 SER SER A . n A 1 94 ASP 94 1949 1949 ASP ASP A . n A 1 95 ILE 95 1950 1950 ILE ILE A . n A 1 96 GLY 96 1951 1951 GLY GLY A . n A 1 97 ARG 97 1952 1952 ARG ARG A . n A 1 98 ALA 98 1953 1953 ALA ALA A . n A 1 99 GLY 99 1954 1954 GLY GLY A . n A 1 100 HIS 100 1955 1955 HIS HIS A . n A 1 101 ASN 101 1956 1956 ASN ASN A . n A 1 102 MET 102 1957 1957 MET MET A . n A 1 103 ARG 103 1958 1958 ARG ARG A . n A 1 104 LYS 104 1959 1959 LYS LYS A . n A 1 105 TYR 105 1960 1960 TYR TYR A . n A 1 106 PHE 106 1961 1961 PHE PHE A . n A 1 107 GLU 107 1962 1962 GLU GLU A . n A 1 108 LYS 108 1963 1963 LYS LYS A . n A 1 109 LYS 109 1964 1964 LYS LYS A . n A 1 110 TRP 110 1965 1965 TRP TRP A . n A 1 111 THR 111 1966 1966 THR THR A . n A 1 112 ASP 112 1967 1967 ASP ASP A . n A 1 113 THR 113 1968 1968 THR THR A . n A 1 114 PHE 114 1969 1969 PHE PHE A . n A 1 115 LYS 115 1970 1970 LYS LYS A . n A 1 116 VAL 116 1971 1971 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE 1 2001 1 ADE F59 A . C 3 HOH 1 2101 89 HOH HOH A . C 3 HOH 2 2102 128 HOH HOH A . C 3 HOH 3 2103 38 HOH HOH A . C 3 HOH 4 2104 24 HOH HOH A . C 3 HOH 5 2105 40 HOH HOH A . C 3 HOH 6 2106 17 HOH HOH A . C 3 HOH 7 2107 123 HOH HOH A . C 3 HOH 8 2108 19 HOH HOH A . C 3 HOH 9 2109 15 HOH HOH A . C 3 HOH 10 2110 50 HOH HOH A . C 3 HOH 11 2111 35 HOH HOH A . C 3 HOH 12 2112 11 HOH HOH A . C 3 HOH 13 2113 34 HOH HOH A . C 3 HOH 14 2114 41 HOH HOH A . C 3 HOH 15 2115 130 HOH HOH A . C 3 HOH 16 2116 29 HOH HOH A . C 3 HOH 17 2117 26 HOH HOH A . C 3 HOH 18 2118 58 HOH HOH A . C 3 HOH 19 2119 110 HOH HOH A . C 3 HOH 20 2120 64 HOH HOH A . C 3 HOH 21 2121 30 HOH HOH A . C 3 HOH 22 2122 127 HOH HOH A . C 3 HOH 23 2123 22 HOH HOH A . C 3 HOH 24 2124 16 HOH HOH A . C 3 HOH 25 2125 59 HOH HOH A . C 3 HOH 26 2126 78 HOH HOH A . C 3 HOH 27 2127 7 HOH HOH A . C 3 HOH 28 2128 18 HOH HOH A . C 3 HOH 29 2129 55 HOH HOH A . C 3 HOH 30 2130 31 HOH HOH A . C 3 HOH 31 2131 100 HOH HOH A . C 3 HOH 32 2132 93 HOH HOH A . C 3 HOH 33 2133 57 HOH HOH A . C 3 HOH 34 2134 10 HOH HOH A . C 3 HOH 35 2135 21 HOH HOH A . C 3 HOH 36 2136 32 HOH HOH A . C 3 HOH 37 2137 47 HOH HOH A . C 3 HOH 38 2138 43 HOH HOH A . C 3 HOH 39 2139 3 HOH HOH A . C 3 HOH 40 2140 27 HOH HOH A . C 3 HOH 41 2141 8 HOH HOH A . C 3 HOH 42 2142 75 HOH HOH A . C 3 HOH 43 2143 6 HOH HOH A . C 3 HOH 44 2144 5 HOH HOH A . C 3 HOH 45 2145 99 HOH HOH A . C 3 HOH 46 2146 74 HOH HOH A . C 3 HOH 47 2147 94 HOH HOH A . C 3 HOH 48 2148 56 HOH HOH A . C 3 HOH 49 2149 62 HOH HOH A . C 3 HOH 50 2150 52 HOH HOH A . C 3 HOH 51 2151 67 HOH HOH A . C 3 HOH 52 2152 65 HOH HOH A . C 3 HOH 53 2153 45 HOH HOH A . C 3 HOH 54 2154 37 HOH HOH A . C 3 HOH 55 2155 25 HOH HOH A . C 3 HOH 56 2156 83 HOH HOH A . C 3 HOH 57 2157 134 HOH HOH A . C 3 HOH 58 2158 2 HOH HOH A . C 3 HOH 59 2159 13 HOH HOH A . C 3 HOH 60 2160 46 HOH HOH A . C 3 HOH 61 2161 114 HOH HOH A . C 3 HOH 62 2162 39 HOH HOH A . C 3 HOH 63 2163 23 HOH HOH A . C 3 HOH 64 2164 1 HOH HOH A . C 3 HOH 65 2165 88 HOH HOH A . C 3 HOH 66 2166 133 HOH HOH A . C 3 HOH 67 2167 20 HOH HOH A . C 3 HOH 68 2168 80 HOH HOH A . C 3 HOH 69 2169 60 HOH HOH A . C 3 HOH 70 2170 51 HOH HOH A . C 3 HOH 71 2171 9 HOH HOH A . C 3 HOH 72 2172 54 HOH HOH A . C 3 HOH 73 2173 4 HOH HOH A . C 3 HOH 74 2174 48 HOH HOH A . C 3 HOH 75 2175 91 HOH HOH A . C 3 HOH 76 2176 33 HOH HOH A . C 3 HOH 77 2177 79 HOH HOH A . C 3 HOH 78 2178 81 HOH HOH A . C 3 HOH 79 2179 108 HOH HOH A . C 3 HOH 80 2180 49 HOH HOH A . C 3 HOH 81 2181 125 HOH HOH A . C 3 HOH 82 2182 97 HOH HOH A . C 3 HOH 83 2183 126 HOH HOH A . C 3 HOH 84 2184 73 HOH HOH A . C 3 HOH 85 2185 28 HOH HOH A . C 3 HOH 86 2186 14 HOH HOH A . C 3 HOH 87 2187 112 HOH HOH A . C 3 HOH 88 2188 82 HOH HOH A . C 3 HOH 89 2189 36 HOH HOH A . C 3 HOH 90 2190 84 HOH HOH A . C 3 HOH 91 2191 90 HOH HOH A . C 3 HOH 92 2192 87 HOH HOH A . C 3 HOH 93 2193 71 HOH HOH A . C 3 HOH 94 2194 121 HOH HOH A . C 3 HOH 95 2195 95 HOH HOH A . C 3 HOH 96 2196 118 HOH HOH A . C 3 HOH 97 2197 136 HOH HOH A . C 3 HOH 98 2198 104 HOH HOH A . C 3 HOH 99 2199 98 HOH HOH A . C 3 HOH 100 2200 101 HOH HOH A . C 3 HOH 101 2201 12 HOH HOH A . C 3 HOH 102 2202 44 HOH HOH A . C 3 HOH 103 2203 111 HOH HOH A . C 3 HOH 104 2204 85 HOH HOH A . C 3 HOH 105 2205 61 HOH HOH A . C 3 HOH 106 2206 86 HOH HOH A . C 3 HOH 107 2207 53 HOH HOH A . C 3 HOH 108 2208 124 HOH HOH A . C 3 HOH 109 2209 117 HOH HOH A . C 3 HOH 110 2210 69 HOH HOH A . C 3 HOH 111 2211 135 HOH HOH A . C 3 HOH 112 2212 105 HOH HOH A . C 3 HOH 113 2213 76 HOH HOH A . C 3 HOH 114 2214 63 HOH HOH A . C 3 HOH 115 2215 66 HOH HOH A . C 3 HOH 116 2216 42 HOH HOH A . C 3 HOH 117 2217 68 HOH HOH A . C 3 HOH 118 2218 106 HOH HOH A . C 3 HOH 119 2219 72 HOH HOH A . C 3 HOH 120 2220 113 HOH HOH A . C 3 HOH 121 2221 116 HOH HOH A . C 3 HOH 122 2222 96 HOH HOH A . C 3 HOH 123 2223 103 HOH HOH A . C 3 HOH 124 2224 122 HOH HOH A . C 3 HOH 125 2225 92 HOH HOH A . C 3 HOH 126 2226 109 HOH HOH A . C 3 HOH 127 2227 131 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5DYX _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.129 _cell.length_a_esd ? _cell.length_b 96.236 _cell.length_b_esd ? _cell.length_c 57.783 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5DYX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 70.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG500MME (20%), PEG1000 (2%), PEG3350 (2%), PEG20000 (10%), MPD (2%)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-05-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5DYX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.850 _reflns.d_resolution_low 48.120 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19634 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.400 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 23 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.035 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 126337 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.850 1.890 ? 2.200 7319 ? ? 1154 ? 99.600 ? ? ? ? 0.733 ? ? ? ? ? ? ? ? 6.300 ? ? ? ? ? 0.312 0 1 1 0.865 ? 9.060 48.120 ? 22.800 1151 ? ? 201 ? 99.200 ? ? ? ? 0.082 ? ? ? ? ? ? ? ? 5.700 ? ? ? ? ? 0.035 0 2 1 0.994 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 127.370 _refine.B_iso_mean 44.0179 _refine.B_iso_min 21.470 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5DYX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8500 _refine.ls_d_res_low 42.2800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 19608 _refine.ls_number_reflns_R_free 990 _refine.ls_number_reflns_R_work 18618 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.6600 _refine.ls_percent_reflns_R_free 5.0500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1774 _refine.ls_R_factor_R_free 0.2017 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1761 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4IR5 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.6500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8500 _refine_hist.d_res_low 42.2800 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 127 _refine_hist.number_atoms_total 1084 _refine_hist.pdbx_number_residues_total 116 _refine_hist.pdbx_B_iso_mean_ligand 48.57 _refine_hist.pdbx_B_iso_mean_solvent 48.64 _refine_hist.pdbx_number_atoms_protein 947 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 979 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.000 ? 1317 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.036 ? 141 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 166 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.210 ? 373 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8500 1.9476 . . 156 2573 99.0000 . . . 0.3031 . 0.2686 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9476 2.0696 . . 148 2620 100.0000 . . . 0.2543 . 0.2153 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0696 2.2294 . . 117 2652 100.0000 . . . 0.1987 . 0.1919 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2294 2.4537 . . 135 2641 100.0000 . . . 0.2283 . 0.1877 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4537 2.8087 . . 144 2659 100.0000 . . . 0.2351 . 0.1849 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8087 3.5384 . . 133 2695 100.0000 . . . 0.2165 . 0.1875 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5384 42.28 . . 157 2778 100.0000 . . . 0.1659 . 0.1501 . . . . . . . . . . # _struct.entry_id 5DYX _struct.title 'Crystal Structure of BAZ2B bromodomain in complex with fragment F59' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5DYX _struct_keywords.text 'four helical bundle, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BAZ2B_HUMAN _struct_ref.pdbx_db_accession Q9UIF8 _struct_ref.pdbx_db_isoform Q9UIF8-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF DNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKV ; _struct_ref.pdbx_align_begin 1954 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5DYX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UIF8 _struct_ref_seq.db_align_beg 1954 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2067 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1858 _struct_ref_seq.pdbx_auth_seq_align_end 1971 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5DYX SER A 1 ? UNP Q9UIF8 ? ? 'expression tag' 1856 1 1 5DYX MET A 2 ? UNP Q9UIF8 ? ? 'expression tag' 1857 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 350 ? 1 MORE 3 ? 1 'SSA (A^2)' 7850 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 13 ? HIS A 28 ? LYS A 1868 HIS A 1883 1 ? 16 HELX_P HELX_P2 AA2 GLU A 29 ? LEU A 35 ? GLU A 1884 LEU A 1890 5 ? 7 HELX_P HELX_P3 AA3 GLY A 45 ? ILE A 50 ? GLY A 1900 ILE A 1905 1 ? 6 HELX_P HELX_P4 AA4 ASP A 55 ? SER A 65 ? ASP A 1910 SER A 1920 1 ? 11 HELX_P HELX_P5 AA5 ASN A 70 ? ASN A 89 ? ASN A 1925 ASN A 1944 1 ? 20 HELX_P HELX_P6 AA6 SER A 93 ? LYS A 115 ? SER A 1948 LYS A 1970 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ADE _struct_site.pdbx_auth_seq_id 2001 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'binding site for residue ADE A 2001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 PRO A 33 ? PRO A 1888 . ? 1_555 ? 2 AC1 6 PHE A 88 ? PHE A 1943 . ? 1_555 ? 3 AC1 6 ASN A 89 ? ASN A 1944 . ? 1_555 ? 4 AC1 6 HOH C . ? HOH A 2107 . ? 1_555 ? 5 AC1 6 HOH C . ? HOH A 2109 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 2110 . ? 1_555 ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 1.4525 -34.4542 -9.8532 0.3324 ? -0.0128 ? -0.0192 ? 0.5689 ? 0.0639 ? 0.5535 ? 0.1054 ? -0.2322 ? -0.2386 ? 0.3557 ? 0.3594 ? 0.0559 ? -0.6622 ? -0.6861 ? -0.3645 ? -0.3334 ? -0.0411 ? 0.2459 ? -0.2530 ? 0.4186 ? -0.0105 ? 2 'X-RAY DIFFRACTION' ? refined -20.4322 -29.4155 -2.3438 0.3379 ? 0.0363 ? -0.0181 ? 0.3054 ? 0.0062 ? 0.4871 ? 0.1254 ? -0.0588 ? 0.0645 ? 0.0912 ? -0.0249 ? 0.0350 ? -0.2434 ? 0.1833 ? -0.8547 ? 0.3201 ? 0.0591 ? 0.4712 ? 0.6401 ? -0.1787 ? -0.0004 ? 3 'X-RAY DIFFRACTION' ? refined -25.0915 -10.0669 -3.1089 0.3434 ? 0.0537 ? 0.0321 ? 0.2656 ? 0.0039 ? 0.3370 ? 0.7700 ? -0.3800 ? 0.3922 ? 0.5246 ? 0.3070 ? 0.3746 ? -0.0802 ? -0.1588 ? 0.2823 ? -0.0859 ? 0.0733 ? 0.1804 ? -0.2522 ? 0.0113 ? 0.0002 ? 4 'X-RAY DIFFRACTION' ? refined -16.7470 -19.0945 -5.5610 0.2708 ? 0.0287 ? -0.0282 ? 0.3000 ? -0.0202 ? 0.2500 ? 1.0787 ? -0.6000 ? 0.2573 ? 0.6904 ? -0.2404 ? 0.3824 ? 0.1465 ? 0.1842 ? 0.0540 ? -0.1165 ? -0.1494 ? 0.0349 ? -0.1564 ? 0.1876 ? 0.0000 ? 5 'X-RAY DIFFRACTION' ? refined -17.6948 -20.0885 7.2337 0.4477 ? 0.1295 ? -0.0018 ? 0.3764 ? 0.0256 ? 0.2741 ? 0.1582 ? 0.1185 ? 0.2194 ? 0.2418 ? -0.1059 ? 0.8124 ? -0.5346 ? -0.6287 ? -0.1259 ? 1.0210 ? 0.4131 ? -0.0141 ? -0.0270 ? 0.2995 ? -0.0009 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 1856 through 1868 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 1869 through 1882 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 1883 through 1910 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 1911 through 1943 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? A 0 ? ? A 0 ? ;chain 'A' and (resid 1944 through 1971 ) ; # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADE N9 N Y N 1 ADE C8 C Y N 2 ADE N7 N Y N 3 ADE C5 C Y N 4 ADE C6 C Y N 5 ADE N6 N N N 6 ADE N1 N Y N 7 ADE C2 C Y N 8 ADE N3 N Y N 9 ADE C4 C Y N 10 ADE HN9 H N N 11 ADE H8 H N N 12 ADE HN61 H N N 13 ADE HN62 H N N 14 ADE H2 H N N 15 ALA N N N N 16 ALA CA C N S 17 ALA C C N N 18 ALA O O N N 19 ALA CB C N N 20 ALA OXT O N N 21 ALA H H N N 22 ALA H2 H N N 23 ALA HA H N N 24 ALA HB1 H N N 25 ALA HB2 H N N 26 ALA HB3 H N N 27 ALA HXT H N N 28 ARG N N N N 29 ARG CA C N S 30 ARG C C N N 31 ARG O O N N 32 ARG CB C N N 33 ARG CG C N N 34 ARG CD C N N 35 ARG NE N N N 36 ARG CZ C N N 37 ARG NH1 N N N 38 ARG NH2 N N N 39 ARG OXT O N N 40 ARG H H N N 41 ARG H2 H N N 42 ARG HA H N N 43 ARG HB2 H N N 44 ARG HB3 H N N 45 ARG HG2 H N N 46 ARG HG3 H N N 47 ARG HD2 H N N 48 ARG HD3 H N N 49 ARG HE H N N 50 ARG HH11 H N N 51 ARG HH12 H N N 52 ARG HH21 H N N 53 ARG HH22 H N N 54 ARG HXT H N N 55 ASN N N N N 56 ASN CA C N S 57 ASN C C N N 58 ASN O O N N 59 ASN CB C N N 60 ASN CG C N N 61 ASN OD1 O N N 62 ASN ND2 N N N 63 ASN OXT O N N 64 ASN H H N N 65 ASN H2 H N N 66 ASN HA H N N 67 ASN HB2 H N N 68 ASN HB3 H N N 69 ASN HD21 H N N 70 ASN HD22 H N N 71 ASN HXT H N N 72 ASP N N N N 73 ASP CA C N S 74 ASP C C N N 75 ASP O O N N 76 ASP CB C N N 77 ASP CG C N N 78 ASP OD1 O N N 79 ASP OD2 O N N 80 ASP OXT O N N 81 ASP H H N N 82 ASP H2 H N N 83 ASP HA H N N 84 ASP HB2 H N N 85 ASP HB3 H N N 86 ASP HD2 H N N 87 ASP HXT H N N 88 CYS N N N N 89 CYS CA C N R 90 CYS C C N N 91 CYS O O N N 92 CYS CB C N N 93 CYS SG S N N 94 CYS OXT O N N 95 CYS H H N N 96 CYS H2 H N N 97 CYS HA H N N 98 CYS HB2 H N N 99 CYS HB3 H N N 100 CYS HG H N N 101 CYS HXT H N N 102 GLN N N N N 103 GLN CA C N S 104 GLN C C N N 105 GLN O O N N 106 GLN CB C N N 107 GLN CG C N N 108 GLN CD C N N 109 GLN OE1 O N N 110 GLN NE2 N N N 111 GLN OXT O N N 112 GLN H H N N 113 GLN H2 H N N 114 GLN HA H N N 115 GLN HB2 H N N 116 GLN HB3 H N N 117 GLN HG2 H N N 118 GLN HG3 H N N 119 GLN HE21 H N N 120 GLN HE22 H N N 121 GLN HXT H N N 122 GLU N N N N 123 GLU CA C N S 124 GLU C C N N 125 GLU O O N N 126 GLU CB C N N 127 GLU CG C N N 128 GLU CD C N N 129 GLU OE1 O N N 130 GLU OE2 O N N 131 GLU OXT O N N 132 GLU H H N N 133 GLU H2 H N N 134 GLU HA H N N 135 GLU HB2 H N N 136 GLU HB3 H N N 137 GLU HG2 H N N 138 GLU HG3 H N N 139 GLU HE2 H N N 140 GLU HXT H N N 141 GLY N N N N 142 GLY CA C N N 143 GLY C C N N 144 GLY O O N N 145 GLY OXT O N N 146 GLY H H N N 147 GLY H2 H N N 148 GLY HA2 H N N 149 GLY HA3 H N N 150 GLY HXT H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LYS N N N N 220 LYS CA C N S 221 LYS C C N N 222 LYS O O N N 223 LYS CB C N N 224 LYS CG C N N 225 LYS CD C N N 226 LYS CE C N N 227 LYS NZ N N N 228 LYS OXT O N N 229 LYS H H N N 230 LYS H2 H N N 231 LYS HA H N N 232 LYS HB2 H N N 233 LYS HB3 H N N 234 LYS HG2 H N N 235 LYS HG3 H N N 236 LYS HD2 H N N 237 LYS HD3 H N N 238 LYS HE2 H N N 239 LYS HE3 H N N 240 LYS HZ1 H N N 241 LYS HZ2 H N N 242 LYS HZ3 H N N 243 LYS HXT H N N 244 MET N N N N 245 MET CA C N S 246 MET C C N N 247 MET O O N N 248 MET CB C N N 249 MET CG C N N 250 MET SD S N N 251 MET CE C N N 252 MET OXT O N N 253 MET H H N N 254 MET H2 H N N 255 MET HA H N N 256 MET HB2 H N N 257 MET HB3 H N N 258 MET HG2 H N N 259 MET HG3 H N N 260 MET HE1 H N N 261 MET HE2 H N N 262 MET HE3 H N N 263 MET HXT H N N 264 PHE N N N N 265 PHE CA C N S 266 PHE C C N N 267 PHE O O N N 268 PHE CB C N N 269 PHE CG C Y N 270 PHE CD1 C Y N 271 PHE CD2 C Y N 272 PHE CE1 C Y N 273 PHE CE2 C Y N 274 PHE CZ C Y N 275 PHE OXT O N N 276 PHE H H N N 277 PHE H2 H N N 278 PHE HA H N N 279 PHE HB2 H N N 280 PHE HB3 H N N 281 PHE HD1 H N N 282 PHE HD2 H N N 283 PHE HE1 H N N 284 PHE HE2 H N N 285 PHE HZ H N N 286 PHE HXT H N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 SER N N N N 305 SER CA C N S 306 SER C C N N 307 SER O O N N 308 SER CB C N N 309 SER OG O N N 310 SER OXT O N N 311 SER H H N N 312 SER H2 H N N 313 SER HA H N N 314 SER HB2 H N N 315 SER HB3 H N N 316 SER HG H N N 317 SER HXT H N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TRP N N N N 336 TRP CA C N S 337 TRP C C N N 338 TRP O O N N 339 TRP CB C N N 340 TRP CG C Y N 341 TRP CD1 C Y N 342 TRP CD2 C Y N 343 TRP NE1 N Y N 344 TRP CE2 C Y N 345 TRP CE3 C Y N 346 TRP CZ2 C Y N 347 TRP CZ3 C Y N 348 TRP CH2 C Y N 349 TRP OXT O N N 350 TRP H H N N 351 TRP H2 H N N 352 TRP HA H N N 353 TRP HB2 H N N 354 TRP HB3 H N N 355 TRP HD1 H N N 356 TRP HE1 H N N 357 TRP HE3 H N N 358 TRP HZ2 H N N 359 TRP HZ3 H N N 360 TRP HH2 H N N 361 TRP HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADE N9 C8 sing Y N 1 ADE N9 C4 sing Y N 2 ADE N9 HN9 sing N N 3 ADE C8 N7 doub Y N 4 ADE C8 H8 sing N N 5 ADE N7 C5 sing Y N 6 ADE C5 C6 sing Y N 7 ADE C5 C4 doub Y N 8 ADE C6 N6 sing N N 9 ADE C6 N1 doub Y N 10 ADE N6 HN61 sing N N 11 ADE N6 HN62 sing N N 12 ADE N1 C2 sing Y N 13 ADE C2 N3 doub Y N 14 ADE C2 H2 sing N N 15 ADE N3 C4 sing Y N 16 ALA N CA sing N N 17 ALA N H sing N N 18 ALA N H2 sing N N 19 ALA CA C sing N N 20 ALA CA CB sing N N 21 ALA CA HA sing N N 22 ALA C O doub N N 23 ALA C OXT sing N N 24 ALA CB HB1 sing N N 25 ALA CB HB2 sing N N 26 ALA CB HB3 sing N N 27 ALA OXT HXT sing N N 28 ARG N CA sing N N 29 ARG N H sing N N 30 ARG N H2 sing N N 31 ARG CA C sing N N 32 ARG CA CB sing N N 33 ARG CA HA sing N N 34 ARG C O doub N N 35 ARG C OXT sing N N 36 ARG CB CG sing N N 37 ARG CB HB2 sing N N 38 ARG CB HB3 sing N N 39 ARG CG CD sing N N 40 ARG CG HG2 sing N N 41 ARG CG HG3 sing N N 42 ARG CD NE sing N N 43 ARG CD HD2 sing N N 44 ARG CD HD3 sing N N 45 ARG NE CZ sing N N 46 ARG NE HE sing N N 47 ARG CZ NH1 sing N N 48 ARG CZ NH2 doub N N 49 ARG NH1 HH11 sing N N 50 ARG NH1 HH12 sing N N 51 ARG NH2 HH21 sing N N 52 ARG NH2 HH22 sing N N 53 ARG OXT HXT sing N N 54 ASN N CA sing N N 55 ASN N H sing N N 56 ASN N H2 sing N N 57 ASN CA C sing N N 58 ASN CA CB sing N N 59 ASN CA HA sing N N 60 ASN C O doub N N 61 ASN C OXT sing N N 62 ASN CB CG sing N N 63 ASN CB HB2 sing N N 64 ASN CB HB3 sing N N 65 ASN CG OD1 doub N N 66 ASN CG ND2 sing N N 67 ASN ND2 HD21 sing N N 68 ASN ND2 HD22 sing N N 69 ASN OXT HXT sing N N 70 ASP N CA sing N N 71 ASP N H sing N N 72 ASP N H2 sing N N 73 ASP CA C sing N N 74 ASP CA CB sing N N 75 ASP CA HA sing N N 76 ASP C O doub N N 77 ASP C OXT sing N N 78 ASP CB CG sing N N 79 ASP CB HB2 sing N N 80 ASP CB HB3 sing N N 81 ASP CG OD1 doub N N 82 ASP CG OD2 sing N N 83 ASP OD2 HD2 sing N N 84 ASP OXT HXT sing N N 85 CYS N CA sing N N 86 CYS N H sing N N 87 CYS N H2 sing N N 88 CYS CA C sing N N 89 CYS CA CB sing N N 90 CYS CA HA sing N N 91 CYS C O doub N N 92 CYS C OXT sing N N 93 CYS CB SG sing N N 94 CYS CB HB2 sing N N 95 CYS CB HB3 sing N N 96 CYS SG HG sing N N 97 CYS OXT HXT sing N N 98 GLN N CA sing N N 99 GLN N H sing N N 100 GLN N H2 sing N N 101 GLN CA C sing N N 102 GLN CA CB sing N N 103 GLN CA HA sing N N 104 GLN C O doub N N 105 GLN C OXT sing N N 106 GLN CB CG sing N N 107 GLN CB HB2 sing N N 108 GLN CB HB3 sing N N 109 GLN CG CD sing N N 110 GLN CG HG2 sing N N 111 GLN CG HG3 sing N N 112 GLN CD OE1 doub N N 113 GLN CD NE2 sing N N 114 GLN NE2 HE21 sing N N 115 GLN NE2 HE22 sing N N 116 GLN OXT HXT sing N N 117 GLU N CA sing N N 118 GLU N H sing N N 119 GLU N H2 sing N N 120 GLU CA C sing N N 121 GLU CA CB sing N N 122 GLU CA HA sing N N 123 GLU C O doub N N 124 GLU C OXT sing N N 125 GLU CB CG sing N N 126 GLU CB HB2 sing N N 127 GLU CB HB3 sing N N 128 GLU CG CD sing N N 129 GLU CG HG2 sing N N 130 GLU CG HG3 sing N N 131 GLU CD OE1 doub N N 132 GLU CD OE2 sing N N 133 GLU OE2 HE2 sing N N 134 GLU OXT HXT sing N N 135 GLY N CA sing N N 136 GLY N H sing N N 137 GLY N H2 sing N N 138 GLY CA C sing N N 139 GLY CA HA2 sing N N 140 GLY CA HA3 sing N N 141 GLY C O doub N N 142 GLY C OXT sing N N 143 GLY OXT HXT sing N N 144 HIS N CA sing N N 145 HIS N H sing N N 146 HIS N H2 sing N N 147 HIS CA C sing N N 148 HIS CA CB sing N N 149 HIS CA HA sing N N 150 HIS C O doub N N 151 HIS C OXT sing N N 152 HIS CB CG sing N N 153 HIS CB HB2 sing N N 154 HIS CB HB3 sing N N 155 HIS CG ND1 sing Y N 156 HIS CG CD2 doub Y N 157 HIS ND1 CE1 doub Y N 158 HIS ND1 HD1 sing N N 159 HIS CD2 NE2 sing Y N 160 HIS CD2 HD2 sing N N 161 HIS CE1 NE2 sing Y N 162 HIS CE1 HE1 sing N N 163 HIS NE2 HE2 sing N N 164 HIS OXT HXT sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 ILE N CA sing N N 168 ILE N H sing N N 169 ILE N H2 sing N N 170 ILE CA C sing N N 171 ILE CA CB sing N N 172 ILE CA HA sing N N 173 ILE C O doub N N 174 ILE C OXT sing N N 175 ILE CB CG1 sing N N 176 ILE CB CG2 sing N N 177 ILE CB HB sing N N 178 ILE CG1 CD1 sing N N 179 ILE CG1 HG12 sing N N 180 ILE CG1 HG13 sing N N 181 ILE CG2 HG21 sing N N 182 ILE CG2 HG22 sing N N 183 ILE CG2 HG23 sing N N 184 ILE CD1 HD11 sing N N 185 ILE CD1 HD12 sing N N 186 ILE CD1 HD13 sing N N 187 ILE OXT HXT sing N N 188 LEU N CA sing N N 189 LEU N H sing N N 190 LEU N H2 sing N N 191 LEU CA C sing N N 192 LEU CA CB sing N N 193 LEU CA HA sing N N 194 LEU C O doub N N 195 LEU C OXT sing N N 196 LEU CB CG sing N N 197 LEU CB HB2 sing N N 198 LEU CB HB3 sing N N 199 LEU CG CD1 sing N N 200 LEU CG CD2 sing N N 201 LEU CG HG sing N N 202 LEU CD1 HD11 sing N N 203 LEU CD1 HD12 sing N N 204 LEU CD1 HD13 sing N N 205 LEU CD2 HD21 sing N N 206 LEU CD2 HD22 sing N N 207 LEU CD2 HD23 sing N N 208 LEU OXT HXT sing N N 209 LYS N CA sing N N 210 LYS N H sing N N 211 LYS N H2 sing N N 212 LYS CA C sing N N 213 LYS CA CB sing N N 214 LYS CA HA sing N N 215 LYS C O doub N N 216 LYS C OXT sing N N 217 LYS CB CG sing N N 218 LYS CB HB2 sing N N 219 LYS CB HB3 sing N N 220 LYS CG CD sing N N 221 LYS CG HG2 sing N N 222 LYS CG HG3 sing N N 223 LYS CD CE sing N N 224 LYS CD HD2 sing N N 225 LYS CD HD3 sing N N 226 LYS CE NZ sing N N 227 LYS CE HE2 sing N N 228 LYS CE HE3 sing N N 229 LYS NZ HZ1 sing N N 230 LYS NZ HZ2 sing N N 231 LYS NZ HZ3 sing N N 232 LYS OXT HXT sing N N 233 MET N CA sing N N 234 MET N H sing N N 235 MET N H2 sing N N 236 MET CA C sing N N 237 MET CA CB sing N N 238 MET CA HA sing N N 239 MET C O doub N N 240 MET C OXT sing N N 241 MET CB CG sing N N 242 MET CB HB2 sing N N 243 MET CB HB3 sing N N 244 MET CG SD sing N N 245 MET CG HG2 sing N N 246 MET CG HG3 sing N N 247 MET SD CE sing N N 248 MET CE HE1 sing N N 249 MET CE HE2 sing N N 250 MET CE HE3 sing N N 251 MET OXT HXT sing N N 252 PHE N CA sing N N 253 PHE N H sing N N 254 PHE N H2 sing N N 255 PHE CA C sing N N 256 PHE CA CB sing N N 257 PHE CA HA sing N N 258 PHE C O doub N N 259 PHE C OXT sing N N 260 PHE CB CG sing N N 261 PHE CB HB2 sing N N 262 PHE CB HB3 sing N N 263 PHE CG CD1 doub Y N 264 PHE CG CD2 sing Y N 265 PHE CD1 CE1 sing Y N 266 PHE CD1 HD1 sing N N 267 PHE CD2 CE2 doub Y N 268 PHE CD2 HD2 sing N N 269 PHE CE1 CZ doub Y N 270 PHE CE1 HE1 sing N N 271 PHE CE2 CZ sing Y N 272 PHE CE2 HE2 sing N N 273 PHE CZ HZ sing N N 274 PHE OXT HXT sing N N 275 PRO N CA sing N N 276 PRO N CD sing N N 277 PRO N H sing N N 278 PRO CA C sing N N 279 PRO CA CB sing N N 280 PRO CA HA sing N N 281 PRO C O doub N N 282 PRO C OXT sing N N 283 PRO CB CG sing N N 284 PRO CB HB2 sing N N 285 PRO CB HB3 sing N N 286 PRO CG CD sing N N 287 PRO CG HG2 sing N N 288 PRO CG HG3 sing N N 289 PRO CD HD2 sing N N 290 PRO CD HD3 sing N N 291 PRO OXT HXT sing N N 292 SER N CA sing N N 293 SER N H sing N N 294 SER N H2 sing N N 295 SER CA C sing N N 296 SER CA CB sing N N 297 SER CA HA sing N N 298 SER C O doub N N 299 SER C OXT sing N N 300 SER CB OG sing N N 301 SER CB HB2 sing N N 302 SER CB HB3 sing N N 303 SER OG HG sing N N 304 SER OXT HXT sing N N 305 THR N CA sing N N 306 THR N H sing N N 307 THR N H2 sing N N 308 THR CA C sing N N 309 THR CA CB sing N N 310 THR CA HA sing N N 311 THR C O doub N N 312 THR C OXT sing N N 313 THR CB OG1 sing N N 314 THR CB CG2 sing N N 315 THR CB HB sing N N 316 THR OG1 HG1 sing N N 317 THR CG2 HG21 sing N N 318 THR CG2 HG22 sing N N 319 THR CG2 HG23 sing N N 320 THR OXT HXT sing N N 321 TRP N CA sing N N 322 TRP N H sing N N 323 TRP N H2 sing N N 324 TRP CA C sing N N 325 TRP CA CB sing N N 326 TRP CA HA sing N N 327 TRP C O doub N N 328 TRP C OXT sing N N 329 TRP CB CG sing N N 330 TRP CB HB2 sing N N 331 TRP CB HB3 sing N N 332 TRP CG CD1 doub Y N 333 TRP CG CD2 sing Y N 334 TRP CD1 NE1 sing Y N 335 TRP CD1 HD1 sing N N 336 TRP CD2 CE2 doub Y N 337 TRP CD2 CE3 sing Y N 338 TRP NE1 CE2 sing Y N 339 TRP NE1 HE1 sing N N 340 TRP CE2 CZ2 sing Y N 341 TRP CE3 CZ3 doub Y N 342 TRP CE3 HE3 sing N N 343 TRP CZ2 CH2 doub Y N 344 TRP CZ2 HZ2 sing N N 345 TRP CZ3 CH2 sing Y N 346 TRP CZ3 HZ3 sing N N 347 TRP CH2 HH2 sing N N 348 TRP OXT HXT sing N N 349 TYR N CA sing N N 350 TYR N H sing N N 351 TYR N H2 sing N N 352 TYR CA C sing N N 353 TYR CA CB sing N N 354 TYR CA HA sing N N 355 TYR C O doub N N 356 TYR C OXT sing N N 357 TYR CB CG sing N N 358 TYR CB HB2 sing N N 359 TYR CB HB3 sing N N 360 TYR CG CD1 doub Y N 361 TYR CG CD2 sing Y N 362 TYR CD1 CE1 sing Y N 363 TYR CD1 HD1 sing N N 364 TYR CD2 CE2 doub Y N 365 TYR CD2 HD2 sing N N 366 TYR CE1 CZ doub Y N 367 TYR CE1 HE1 sing N N 368 TYR CE2 CZ sing Y N 369 TYR CE2 HE2 sing N N 370 TYR CZ OH sing N N 371 TYR OH HH sing N N 372 TYR OXT HXT sing N N 373 VAL N CA sing N N 374 VAL N H sing N N 375 VAL N H2 sing N N 376 VAL CA C sing N N 377 VAL CA CB sing N N 378 VAL CA HA sing N N 379 VAL C O doub N N 380 VAL C OXT sing N N 381 VAL CB CG1 sing N N 382 VAL CB CG2 sing N N 383 VAL CB HB sing N N 384 VAL CG1 HG11 sing N N 385 VAL CG1 HG12 sing N N 386 VAL CG1 HG13 sing N N 387 VAL CG2 HG21 sing N N 388 VAL CG2 HG22 sing N N 389 VAL CG2 HG23 sing N N 390 VAL OXT HXT sing N N 391 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4IR5 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 5DYX _atom_sites.fract_transf_matrix[1][1] 0.012326 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010391 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017306 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_