data_5EW7 # _entry.id 5EW7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5EW7 pdb_00005ew7 10.2210/pdb5ew7/pdb WWPDB D_1000215601 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5EW4 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5EW7 _pdbx_database_status.recvd_initial_deposition_date 2015-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomchick, D.R.' 1 'Dodd, D.W.' 2 'Gagnon, K.T.' 3 'Corey, D.R.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 0006-2960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 55 _citation.language ? _citation.page_first 1283 _citation.page_last 1286 _citation.title 'Pathogenic C9ORF72 Antisense Repeat RNA Forms a Double Helix with Tandem C:C Mismatches.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.6b00136 _citation.pdbx_database_id_PubMed 26878348 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dodd, D.W.' 1 ? primary 'Tomchick, D.R.' 2 ? primary 'Corey, D.R.' 3 ? primary 'Gagnon, K.T.' 4 ? # _cell.length_a 41.134 _cell.length_b 47.659 _cell.length_c 59.495 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5EW7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 5EW7 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*GP*GP*CP*CP*CP*C)-3') ; 6909.185 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 non-polymer nat 'MAGNESIUM ION' 24.305 4 ? ? ? ? 4 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 5 water nat water 18.015 100 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCCCGGCCCCGGCCCCGGCCCC _entity_poly.pdbx_seq_one_letter_code_can CCCCGGCCCCGGCCCCGGCCCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 C n 1 8 C n 1 9 C n 1 10 C n 1 11 G n 1 12 G n 1 13 C n 1 14 C n 1 15 C n 1 16 C n 1 17 G n 1 18 G n 1 19 C n 1 20 C n 1 21 C n 1 22 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5EW7 _struct_ref.pdbx_db_accession 5EW7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5EW7 A 1 ? 22 ? 5EW7 1 ? 22 ? 1 22 2 1 5EW7 B 1 ? 22 ? 5EW7 1 ? 22 ? 1 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5EW7 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.04 M sodium cacodylate, 50 mM KCl, 0.08 M NaCl, 0.012 M spermine, 0.02 M barium chloride, 10% (v/v) (+/-)-2-methyl-2,4-pentanediol, equilibrated against 35% (v/v) (+/-)-2-methyl-2,4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details monochromator _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91967 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91967 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.d_resolution_high 1.750 _reflns.d_resolution_low 50.000 _reflns.pdbx_number_measured_all 70731 _reflns.number_obs 12281 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_netI_over_av_sigmaI 31.074 _reflns.pdbx_netI_over_sigmaI 9.700 _reflns.pdbx_chi_squared 0.893 _reflns.pdbx_redundancy 5.800 _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rrim_I_all 0.053 _reflns.pdbx_Rpim_I_all 0.023 _reflns.B_iso_Wilson_estimate 19.560 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5EW7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.750 1.780 ? ? ? 0 ? ? ? 0.916 5.300 ? ? ? 588 ? ? ? ? 100.000 ? 0.506 0.760 1 2 1.780 1.810 ? ? ? 0 0.982 ? ? 0.885 5.600 ? ? ? 616 ? ? ? ? 100.000 ? 0.457 0.753 1 3 1.810 1.850 ? ? ? 0 0.701 ? ? 0.872 5.800 ? ? ? 585 ? ? ? ? 100.000 0.771 0.318 0.824 1 4 1.850 1.890 ? ? ? 0 0.618 ? ? 0.935 5.800 ? ? ? 593 ? ? ? ? 100.000 0.680 0.281 0.800 1 5 1.890 1.930 ? ? ? 0 0.496 ? ? 0.961 5.900 ? ? ? 614 ? ? ? ? 100.000 0.545 0.223 0.871 1 6 1.930 1.970 ? ? ? 0 0.415 ? ? 0.979 5.800 ? ? ? 605 ? ? ? ? 100.000 0.456 0.188 0.913 1 7 1.970 2.020 ? ? ? 0 0.304 ? ? 0.985 5.900 ? ? ? 595 ? ? ? ? 100.000 0.334 0.136 0.960 1 8 2.020 2.070 ? ? ? 0 0.260 ? ? 0.991 5.900 ? ? ? 619 ? ? ? ? 100.000 0.285 0.118 0.968 1 9 2.070 2.140 ? ? ? 0 0.204 ? ? 0.965 5.900 ? ? ? 595 ? ? ? ? 100.000 0.224 0.091 0.978 1 10 2.140 2.200 ? ? ? 0 0.160 ? ? 0.986 5.900 ? ? ? 610 ? ? ? ? 100.000 0.176 0.072 0.986 1 11 2.200 2.280 ? ? ? 0 0.140 ? ? 0.965 5.900 ? ? ? 616 ? ? ? ? 100.000 0.154 0.063 0.988 1 12 2.280 2.380 ? ? ? 0 0.102 ? ? 0.875 5.900 ? ? ? 602 ? ? ? ? 100.000 0.112 0.046 0.991 1 13 2.380 2.480 ? ? ? 0 0.088 ? ? 0.832 5.900 ? ? ? 612 ? ? ? ? 100.000 0.097 0.040 0.994 1 14 2.480 2.610 ? ? ? 0 0.068 ? ? 0.783 5.900 ? ? ? 613 ? ? ? ? 100.000 0.074 0.030 0.996 1 15 2.610 2.780 ? ? ? 0 0.061 ? ? 0.847 5.900 ? ? ? 621 ? ? ? ? 100.000 0.067 0.027 0.996 1 16 2.780 2.990 ? ? ? 0 0.056 ? ? 1.043 5.800 ? ? ? 618 ? ? ? ? 100.000 0.062 0.026 0.996 1 17 2.990 3.290 ? ? ? 0 0.052 ? ? 1.188 5.800 ? ? ? 623 ? ? ? ? 100.000 0.057 0.023 0.998 1 18 3.290 3.770 ? ? ? 0 0.037 ? ? 0.879 5.700 ? ? ? 630 ? ? ? ? 100.000 0.040 0.016 0.999 1 19 3.770 4.750 ? ? ? 0 0.021 ? ? 0.494 5.500 ? ? ? 644 ? ? ? ? 99.800 0.023 0.009 1.000 1 20 4.750 50.000 ? ? ? 0 0.020 ? ? 0.459 5.200 ? ? ? 682 ? ? ? ? 97.700 0.022 0.010 0.999 # _refine.entry_id 5EW7 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.75 _refine.ls_d_res_low 37.1960 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 91.7400 _refine.ls_number_reflns_obs 11264 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2369 _refine.ls_R_factor_R_work 0.2346 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2575 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0000 _refine.ls_number_reflns_R_free 1126 _refine.ls_number_reflns_R_work 10138 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.1189 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1900 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 5EW4' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 61.890 _refine.B_iso_min 5.470 _refine.pdbx_overall_phase_error 27.2200 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 37.1960 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 927 _refine_hist.pdbx_number_residues_total 41 _refine_hist.pdbx_B_iso_mean_ligand 34.38 _refine_hist.pdbx_B_iso_mean_solvent 27.94 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 818 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 936 0.017 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1408 0.419 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 195 0.022 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 39 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 462 5.178 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 1.75 1.8305 8 48.0000 639 . 0.3004 0.3613 . 71 . 710 . 'X-RAY DIFFRACTION' . 1.8305 1.9270 8 87.0000 1180 . 0.2895 0.2819 . 131 . 1311 . 'X-RAY DIFFRACTION' . 1.9270 2.0478 8 99.0000 1344 . 0.2771 0.2883 . 150 . 1494 . 'X-RAY DIFFRACTION' . 2.0478 2.2059 8 100.0000 1372 . 0.2550 0.2678 . 152 . 1524 . 'X-RAY DIFFRACTION' . 2.2059 2.4278 8 100.0000 1375 . 0.2422 0.2407 . 153 . 1528 . 'X-RAY DIFFRACTION' . 2.4278 2.7790 8 100.0000 1375 . 0.2549 0.2714 . 152 . 1527 . 'X-RAY DIFFRACTION' . 2.7790 3.5008 8 99.0000 1399 . 0.2205 0.2682 . 155 . 1554 . 'X-RAY DIFFRACTION' . 3.5008 37.2046 8 99.0000 1454 . 0.2026 0.2291 . 162 . 1616 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5EW7 _struct.title ;Crystal structure of C9ORF72 Antisense CCCCGG repeat RNA associated with Lou Gehrig's disease and frontotemporal dementia, crystallized with Ba2+ ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5EW7 _struct_keywords.text 'REPEAT EXPANSION DISORDER, GENETIC DISEASE, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 5 ? M N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 2 "O3'" ? ? ? 1_555 F MG . MG ? ? A C 2 A MG 104 1_555 ? ? ? ? ? ? ? 2.088 ? ? metalc2 metalc ? ? A G 5 O6 ? ? ? 1_555 C K . K ? ? A G 5 A K 101 1_555 ? ? ? ? ? ? ? 2.836 ? ? metalc3 metalc ? ? A C 13 OP2 ? ? ? 1_555 D MG . MG ? ? A C 13 A MG 102 1_555 ? ? ? ? ? ? ? 2.159 ? ? metalc4 metalc ? ? C K . K ? ? ? 1_555 L HOH . O ? ? A K 101 A HOH 206 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc5 metalc ? ? C K . K ? ? ? 1_555 L HOH . O ? ? A K 101 A HOH 208 1_555 ? ? ? ? ? ? ? 2.781 ? ? metalc6 metalc ? ? C K . K ? ? ? 1_555 L HOH . O ? ? A K 101 A HOH 209 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc7 metalc ? ? C K . K ? ? ? 1_555 L HOH . O ? ? A K 101 A HOH 220 1_555 ? ? ? ? ? ? ? 2.765 ? ? metalc8 metalc ? ? C K . K ? ? ? 1_555 L HOH . O ? ? A K 101 A HOH 224 1_555 ? ? ? ? ? ? ? 2.831 ? ? metalc9 metalc ? ? C K . K ? ? ? 1_555 L HOH . O ? ? A K 101 A HOH 242 1_555 ? ? ? ? ? ? ? 2.738 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 210 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 103 A HOH 243 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc12 metalc ? ? L HOH . O ? ? ? 3_646 G BA . BA ? ? A HOH 223 B BA 101 1_555 ? ? ? ? ? ? ? 2.736 ? ? metalc13 metalc ? ? L HOH . O ? ? ? 3_646 G BA . BA ? ? A HOH 230 B BA 101 1_555 ? ? ? ? ? ? ? 2.671 ? ? metalc14 metalc ? ? L HOH . O ? ? ? 1_555 G BA . BA ? ? A HOH 240 B BA 101 1_555 ? ? ? ? ? ? ? 2.663 ? ? metalc15 metalc ? ? B G 5 O6 ? ? ? 1_555 I K . K ? ? B G 5 B K 103 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc16 metalc ? ? B C 10 O2 ? ? ? 1_555 G BA . BA ? ? B C 10 B BA 101 3_656 ? ? ? ? ? ? ? 2.596 ? ? metalc17 metalc ? ? B C 13 "O3'" ? ? ? 1_555 K MG . MG ? ? B C 13 B MG 105 1_555 ? ? ? ? ? ? ? 2.901 ? ? metalc18 metalc ? ? B C 14 OP1 ? ? ? 1_555 K MG . MG ? ? B C 14 B MG 105 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc19 metalc ? ? B G 17 OP2 ? ? ? 1_555 H K . K ? ? B G 17 B K 102 1_555 ? ? ? ? ? ? ? 2.668 ? ? metalc20 metalc ? ? B G 17 OP1 ? ? ? 1_555 J K . K ? ? B G 17 B K 104 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc21 metalc ? ? G BA . BA ? ? ? 1_555 M HOH . O ? ? B BA 101 B HOH 208 1_555 ? ? ? ? ? ? ? 2.755 ? ? metalc22 metalc ? ? G BA . BA ? ? ? 1_555 M HOH . O ? ? B BA 101 B HOH 210 3_646 ? ? ? ? ? ? ? 2.891 ? ? metalc23 metalc ? ? G BA . BA ? ? ? 1_555 M HOH . O ? ? B BA 101 B HOH 231 3_646 ? ? ? ? ? ? ? 2.639 ? ? metalc24 metalc ? ? H K . K ? ? ? 1_555 M HOH . O ? ? B K 102 B HOH 204 1_555 ? ? ? ? ? ? ? 2.805 ? ? metalc25 metalc ? ? H K . K ? ? ? 1_555 M HOH . O ? ? B K 102 B HOH 207 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc26 metalc ? ? H K . K ? ? ? 1_555 M HOH . O ? ? B K 102 B HOH 216 1_555 ? ? ? ? ? ? ? 2.816 ? ? metalc27 metalc ? ? H K . K ? ? ? 1_555 M HOH . O ? ? B K 102 B HOH 251 1_555 ? ? ? ? ? ? ? 3.164 ? ? metalc28 metalc ? ? I K . K ? ? ? 1_555 M HOH . O ? ? B K 103 B HOH 211 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc29 metalc ? ? I K . K ? ? ? 1_555 M HOH . O ? ? B K 103 B HOH 214 1_555 ? ? ? ? ? ? ? 2.628 ? ? metalc30 metalc ? ? I K . K ? ? ? 1_555 M HOH . O ? ? B K 103 B HOH 234 1_555 ? ? ? ? ? ? ? 3.089 ? ? metalc31 metalc ? ? I K . K ? ? ? 1_555 M HOH . O ? ? B K 103 B HOH 238 1_555 ? ? ? ? ? ? ? 2.823 ? ? metalc32 metalc ? ? I K . K ? ? ? 1_555 M HOH . O ? ? B K 103 B HOH 253 1_555 ? ? ? ? ? ? ? 2.784 ? ? metalc33 metalc ? ? J K . K ? ? ? 1_555 M HOH . O ? ? B K 104 B HOH 218 3_646 ? ? ? ? ? ? ? 2.853 ? ? metalc34 metalc ? ? J K . K ? ? ? 1_555 M HOH . O ? ? B K 104 B HOH 248 3_646 ? ? ? ? ? ? ? 2.780 ? ? hydrog1 hydrog ? ? A C 4 N4 ? ? ? 1_555 B C 21 O2 ? ? A C 4 B C 21 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog2 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 5 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 5 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 5 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 6 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 6 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 6 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 18 N1 ? ? A C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 18 N2 ? ? A C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 17 N1 ? ? A C 8 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 17 O6 ? ? A C 8 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 17 N2 ? ? A C 8 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 9 O2 ? ? ? 1_555 B C 16 N4 ? ? A C 9 B C 16 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog15 hydrog ? ? A C 10 N4 ? ? ? 1_555 B C 15 N3 ? ? A C 10 B C 15 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 11 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 11 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 11 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 14 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 14 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 14 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 15 O2 ? ? ? 1_555 B C 10 N4 ? ? A C 15 B C 10 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog29 hydrog ? ? A C 16 N3 ? ? ? 1_555 B C 9 N4 ? ? A C 16 B C 9 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 17 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 17 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 17 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 18 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 18 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 18 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 19 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 19 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 19 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 20 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 20 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 20 B G 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 O2 ? ? ? 1_555 B C 4 N4 ? ? A C 21 B C 4 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 101 ? 7 'binding site for residue K A 101' AC2 Software A MG 102 ? 2 'binding site for residue MG A 102' AC3 Software A MG 103 ? 2 'binding site for residue MG A 103' AC4 Software A MG 104 ? 2 'binding site for residue MG A 104' AC5 Software B BA 101 ? 8 'binding site for residue BA B 101' AC6 Software B K 102 ? 4 'binding site for residue K B 102' AC7 Software B K 103 ? 6 'binding site for residue K B 103' AC8 Software B K 104 ? 4 'binding site for residue K B 104' AC9 Software B MG 105 ? 2 'binding site for residue MG B 105' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 7 HOH L . ? HOH A 206 . ? 1_555 ? 3 AC1 7 HOH L . ? HOH A 208 . ? 1_555 ? 4 AC1 7 HOH L . ? HOH A 209 . ? 1_555 ? 5 AC1 7 HOH L . ? HOH A 220 . ? 1_555 ? 6 AC1 7 HOH L . ? HOH A 224 . ? 1_555 ? 7 AC1 7 HOH L . ? HOH A 242 . ? 1_555 ? 8 AC2 2 G A 12 ? G A 12 . ? 1_555 ? 9 AC2 2 C A 13 ? C A 13 . ? 1_555 ? 10 AC3 2 HOH L . ? HOH A 210 . ? 1_555 ? 11 AC3 2 HOH L . ? HOH A 243 . ? 1_555 ? 12 AC4 2 C A 2 ? C A 2 . ? 1_555 ? 13 AC4 2 C A 3 ? C A 3 . ? 1_555 ? 14 AC5 8 HOH L . ? HOH A 223 . ? 3_646 ? 15 AC5 8 HOH L . ? HOH A 230 . ? 3_646 ? 16 AC5 8 HOH L . ? HOH A 240 . ? 1_555 ? 17 AC5 8 C B 10 ? C B 10 . ? 3_646 ? 18 AC5 8 C B 16 ? C B 16 . ? 1_555 ? 19 AC5 8 HOH M . ? HOH B 208 . ? 1_555 ? 20 AC5 8 HOH M . ? HOH B 210 . ? 3_646 ? 21 AC5 8 HOH M . ? HOH B 231 . ? 3_646 ? 22 AC6 4 G B 17 ? G B 17 . ? 1_555 ? 23 AC6 4 HOH M . ? HOH B 204 . ? 1_555 ? 24 AC6 4 HOH M . ? HOH B 207 . ? 1_555 ? 25 AC6 4 HOH M . ? HOH B 216 . ? 1_555 ? 26 AC7 6 G B 5 ? G B 5 . ? 1_555 ? 27 AC7 6 HOH M . ? HOH B 211 . ? 1_555 ? 28 AC7 6 HOH M . ? HOH B 214 . ? 1_555 ? 29 AC7 6 HOH M . ? HOH B 234 . ? 1_555 ? 30 AC7 6 HOH M . ? HOH B 238 . ? 1_555 ? 31 AC7 6 HOH M . ? HOH B 253 . ? 1_555 ? 32 AC8 4 C B 16 ? C B 16 . ? 1_555 ? 33 AC8 4 G B 17 ? G B 17 . ? 1_555 ? 34 AC8 4 HOH M . ? HOH B 218 . ? 3_646 ? 35 AC8 4 HOH M . ? HOH B 248 . ? 3_646 ? 36 AC9 2 C B 13 ? C B 13 . ? 1_555 ? 37 AC9 2 C B 14 ? C B 14 . ? 1_555 ? # _atom_sites.entry_id 5EW7 _atom_sites.fract_transf_matrix[1][1] 0.024311 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020982 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016808 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BA C H K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 ? ? ? A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n A 1 11 G 11 11 11 G G A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 C 19 19 19 C C A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 ? ? ? A . n B 1 1 C 1 1 1 C C B . n B 1 2 C 2 2 2 C C B . n B 1 3 C 3 3 3 C C B . n B 1 4 C 4 4 4 C C B . n B 1 5 G 5 5 5 G G B . n B 1 6 G 6 6 6 G G B . n B 1 7 C 7 7 7 C C B . n B 1 8 C 8 8 8 C C B . n B 1 9 C 9 9 9 C C B . n B 1 10 C 10 10 10 C C B . n B 1 11 G 11 11 11 G G B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 C 14 14 14 C C B . n B 1 15 C 15 15 15 C C B . n B 1 16 C 16 16 16 C C B . n B 1 17 G 17 17 17 G G B . n B 1 18 G 18 18 18 G G B . n B 1 19 C 19 19 19 C C B . n B 1 20 C 20 20 20 C C B . n B 1 21 C 21 21 21 C C B . n B 1 22 C 22 22 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 101 4 K K A . D 3 MG 1 102 1 MG MG A . E 3 MG 1 103 2 MG MG A . F 3 MG 1 104 3 MG MG A . G 4 BA 1 101 1 BA BA B . H 2 K 1 102 1 K K B . I 2 K 1 103 2 K K B . J 2 K 1 104 3 K K B . K 3 MG 1 105 4 MG MG B . L 5 HOH 1 201 69 HOH HOH A . L 5 HOH 2 202 13 HOH HOH A . L 5 HOH 3 203 103 HOH HOH A . L 5 HOH 4 204 64 HOH HOH A . L 5 HOH 5 205 52 HOH HOH A . L 5 HOH 6 206 36 HOH HOH A . L 5 HOH 7 207 9 HOH HOH A . L 5 HOH 8 208 49 HOH HOH A . L 5 HOH 9 209 7 HOH HOH A . L 5 HOH 10 210 22 HOH HOH A . L 5 HOH 11 211 34 HOH HOH A . L 5 HOH 12 212 87 HOH HOH A . L 5 HOH 13 213 101 HOH HOH A . L 5 HOH 14 214 10 HOH HOH A . L 5 HOH 15 215 83 HOH HOH A . L 5 HOH 16 216 67 HOH HOH A . L 5 HOH 17 217 63 HOH HOH A . L 5 HOH 18 218 93 HOH HOH A . L 5 HOH 19 219 59 HOH HOH A . L 5 HOH 20 220 70 HOH HOH A . L 5 HOH 21 221 25 HOH HOH A . L 5 HOH 22 222 100 HOH HOH A . L 5 HOH 23 223 3 HOH HOH A . L 5 HOH 24 224 58 HOH HOH A . L 5 HOH 25 225 68 HOH HOH A . L 5 HOH 26 226 88 HOH HOH A . L 5 HOH 27 227 82 HOH HOH A . L 5 HOH 28 228 24 HOH HOH A . L 5 HOH 29 229 65 HOH HOH A . L 5 HOH 30 230 11 HOH HOH A . L 5 HOH 31 231 85 HOH HOH A . L 5 HOH 32 232 43 HOH HOH A . L 5 HOH 33 233 28 HOH HOH A . L 5 HOH 34 234 86 HOH HOH A . L 5 HOH 35 235 38 HOH HOH A . L 5 HOH 36 236 54 HOH HOH A . L 5 HOH 37 237 41 HOH HOH A . L 5 HOH 38 238 98 HOH HOH A . L 5 HOH 39 239 76 HOH HOH A . L 5 HOH 40 240 16 HOH HOH A . L 5 HOH 41 241 62 HOH HOH A . L 5 HOH 42 242 57 HOH HOH A . L 5 HOH 43 243 80 HOH HOH A . L 5 HOH 44 244 77 HOH HOH A . M 5 HOH 1 201 55 HOH HOH B . M 5 HOH 2 202 96 HOH HOH B . M 5 HOH 3 203 47 HOH HOH B . M 5 HOH 4 204 81 HOH HOH B . M 5 HOH 5 205 8 HOH HOH B . M 5 HOH 6 206 19 HOH HOH B . M 5 HOH 7 207 37 HOH HOH B . M 5 HOH 8 208 14 HOH HOH B . M 5 HOH 9 209 84 HOH HOH B . M 5 HOH 10 210 18 HOH HOH B . M 5 HOH 11 211 15 HOH HOH B . M 5 HOH 12 212 89 HOH HOH B . M 5 HOH 13 213 97 HOH HOH B . M 5 HOH 14 214 2 HOH HOH B . M 5 HOH 15 215 42 HOH HOH B . M 5 HOH 16 216 51 HOH HOH B . M 5 HOH 17 217 104 HOH HOH B . M 5 HOH 18 218 21 HOH HOH B . M 5 HOH 19 219 46 HOH HOH B . M 5 HOH 20 220 66 HOH HOH B . M 5 HOH 21 221 102 HOH HOH B . M 5 HOH 22 222 27 HOH HOH B . M 5 HOH 23 223 44 HOH HOH B . M 5 HOH 24 224 60 HOH HOH B . M 5 HOH 25 225 12 HOH HOH B . M 5 HOH 26 226 26 HOH HOH B . M 5 HOH 27 227 45 HOH HOH B . M 5 HOH 28 228 23 HOH HOH B . M 5 HOH 29 229 61 HOH HOH B . M 5 HOH 30 230 92 HOH HOH B . M 5 HOH 31 231 5 HOH HOH B . M 5 HOH 32 232 35 HOH HOH B . M 5 HOH 33 233 53 HOH HOH B . M 5 HOH 34 234 1 HOH HOH B . M 5 HOH 35 235 74 HOH HOH B . M 5 HOH 36 236 56 HOH HOH B . M 5 HOH 37 237 29 HOH HOH B . M 5 HOH 38 238 32 HOH HOH B . M 5 HOH 39 239 90 HOH HOH B . M 5 HOH 40 240 6 HOH HOH B . M 5 HOH 41 241 48 HOH HOH B . M 5 HOH 42 242 40 HOH HOH B . M 5 HOH 43 243 30 HOH HOH B . M 5 HOH 44 244 20 HOH HOH B . M 5 HOH 45 245 99 HOH HOH B . M 5 HOH 46 246 17 HOH HOH B . M 5 HOH 47 247 39 HOH HOH B . M 5 HOH 48 248 79 HOH HOH B . M 5 HOH 49 249 91 HOH HOH B . M 5 HOH 50 250 71 HOH HOH B . M 5 HOH 51 251 73 HOH HOH B . M 5 HOH 52 252 31 HOH HOH B . M 5 HOH 53 253 33 HOH HOH B . M 5 HOH 54 254 75 HOH HOH B . M 5 HOH 55 255 4 HOH HOH B . M 5 HOH 56 256 50 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3230 ? 1 MORE -52 ? 1 'SSA (A^2)' 7130 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 206 ? 1_555 74.1 ? 2 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 208 ? 1_555 91.3 ? 3 O ? L HOH . ? A HOH 206 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 208 ? 1_555 67.1 ? 4 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 115.1 ? 5 O ? L HOH . ? A HOH 206 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 120.5 ? 6 O ? L HOH . ? A HOH 208 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 153.5 ? 7 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 220 ? 1_555 145.5 ? 8 O ? L HOH . ? A HOH 206 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 220 ? 1_555 134.7 ? 9 O ? L HOH . ? A HOH 208 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 220 ? 1_555 86.3 ? 10 O ? L HOH . ? A HOH 209 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 220 ? 1_555 70.6 ? 11 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 60.8 ? 12 O ? L HOH . ? A HOH 206 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 66.5 ? 13 O ? L HOH . ? A HOH 208 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 130.8 ? 14 O ? L HOH . ? A HOH 209 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 69.5 ? 15 O ? L HOH . ? A HOH 220 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 224 ? 1_555 139.9 ? 16 O6 ? A G 5 ? A G 5 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 242 ? 1_555 128.1 ? 17 O ? L HOH . ? A HOH 206 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 242 ? 1_555 63.2 ? 18 O ? L HOH . ? A HOH 208 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 242 ? 1_555 97.6 ? 19 O ? L HOH . ? A HOH 209 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 242 ? 1_555 68.6 ? 20 O ? L HOH . ? A HOH 220 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 242 ? 1_555 86.3 ? 21 O ? L HOH . ? A HOH 224 ? 1_555 K ? C K . ? A K 101 ? 1_555 O ? L HOH . ? A HOH 242 ? 1_555 75.5 ? 22 O ? L HOH . ? A HOH 210 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? L HOH . ? A HOH 243 ? 1_555 165.4 ? 23 O ? L HOH . ? A HOH 223 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? L HOH . ? A HOH 230 ? 3_646 68.1 ? 24 O ? L HOH . ? A HOH 223 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? L HOH . ? A HOH 240 ? 1_555 147.2 ? 25 O ? L HOH . ? A HOH 230 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? L HOH . ? A HOH 240 ? 1_555 92.9 ? 26 O ? L HOH . ? A HOH 223 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O2 ? B C 10 ? B C 10 ? 1_555 140.3 ? 27 O ? L HOH . ? A HOH 230 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O2 ? B C 10 ? B C 10 ? 1_555 113.7 ? 28 O ? L HOH . ? A HOH 240 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O2 ? B C 10 ? B C 10 ? 1_555 71.2 ? 29 O ? L HOH . ? A HOH 223 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 119.8 ? 30 O ? L HOH . ? A HOH 230 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 79.1 ? 31 O ? L HOH . ? A HOH 240 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 79.7 ? 32 O2 ? B C 10 ? B C 10 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 35.6 ? 33 O ? L HOH . ? A HOH 223 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 210 ? 3_646 77.0 ? 34 O ? L HOH . ? A HOH 230 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 210 ? 3_646 78.3 ? 35 O ? L HOH . ? A HOH 240 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 210 ? 3_646 73.0 ? 36 O2 ? B C 10 ? B C 10 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 210 ? 3_646 142.5 ? 37 O ? M HOH . ? B HOH 208 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 210 ? 3_646 143.3 ? 38 O ? L HOH . ? A HOH 223 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 231 ? 3_646 132.1 ? 39 O ? L HOH . ? A HOH 230 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 231 ? 3_646 155.3 ? 40 O ? L HOH . ? A HOH 240 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 231 ? 3_646 74.7 ? 41 O2 ? B C 10 ? B C 10 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 231 ? 3_646 42.3 ? 42 O ? M HOH . ? B HOH 208 ? 1_555 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 231 ? 3_646 77.8 ? 43 O ? M HOH . ? B HOH 210 ? 3_646 BA ? G BA . ? B BA 101 ? 1_555 O ? M HOH . ? B HOH 231 ? 3_646 116.7 ? 44 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 211 ? 1_555 119.0 ? 45 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 214 ? 1_555 72.9 ? 46 O ? M HOH . ? B HOH 211 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 214 ? 1_555 124.1 ? 47 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 234 ? 1_555 58.7 ? 48 O ? M HOH . ? B HOH 211 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 234 ? 1_555 75.4 ? 49 O ? M HOH . ? B HOH 214 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 234 ? 1_555 66.4 ? 50 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 238 ? 1_555 91.2 ? 51 O ? M HOH . ? B HOH 211 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 238 ? 1_555 149.8 ? 52 O ? M HOH . ? B HOH 214 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 238 ? 1_555 61.5 ? 53 O ? M HOH . ? B HOH 234 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 238 ? 1_555 125.6 ? 54 O6 ? B G 5 ? B G 5 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 127.1 ? 55 O ? M HOH . ? B HOH 211 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 71.4 ? 56 O ? M HOH . ? B HOH 214 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 62.1 ? 57 O ? M HOH . ? B HOH 234 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 77.9 ? 58 O ? M HOH . ? B HOH 238 ? 1_555 K ? I K . ? B K 103 ? 1_555 O ? M HOH . ? B HOH 253 ? 1_555 90.8 ? 59 "O3'" ? B C 13 ? B C 13 ? 1_555 MG ? K MG . ? B MG 105 ? 1_555 OP1 ? B C 14 ? B C 14 ? 1_555 57.1 ? 60 OP2 ? B G 17 ? B G 17 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 204 ? 1_555 85.5 ? 61 OP2 ? B G 17 ? B G 17 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 118.4 ? 62 O ? M HOH . ? B HOH 204 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 80.2 ? 63 OP2 ? B G 17 ? B G 17 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 83.0 ? 64 O ? M HOH . ? B HOH 204 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 150.0 ? 65 O ? M HOH . ? B HOH 207 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 81.2 ? 66 OP2 ? B G 17 ? B G 17 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 251 ? 1_555 128.2 ? 67 O ? M HOH . ? B HOH 204 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 251 ? 1_555 146.3 ? 68 O ? M HOH . ? B HOH 207 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 251 ? 1_555 82.5 ? 69 O ? M HOH . ? B HOH 216 ? 1_555 K ? H K . ? B K 102 ? 1_555 O ? M HOH . ? B HOH 251 ? 1_555 52.1 ? 70 OP1 ? B G 17 ? B G 17 ? 1_555 K ? J K . ? B K 104 ? 1_555 O ? M HOH . ? B HOH 218 ? 3_646 97.0 ? 71 OP1 ? B G 17 ? B G 17 ? 1_555 K ? J K . ? B K 104 ? 1_555 O ? M HOH . ? B HOH 248 ? 3_646 163.4 ? 72 O ? M HOH . ? B HOH 218 ? 3_646 K ? J K . ? B K 104 ? 1_555 O ? M HOH . ? B HOH 248 ? 3_646 69.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-02-24 2 'Structure model' 1 1 2016-03-16 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' citation 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' pdbx_struct_oper_list 8 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 9 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 26 3 'Structure model' '_pdbx_struct_conn_angle.value' 27 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 28 3 'Structure model' '_struct_conn.pdbx_dist_value' 29 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 3 'Structure model' '_struct_conn.ptnr1_symmetry' 37 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 3 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 16.0704 35.5754 61.2026 0.2410 0.2122 0.5009 0.0144 0.0481 -0.0919 7.1396 1.0804 2.9813 -0.5849 1.6578 0.0753 -0.2962 0.2449 0.0215 -0.4950 0.0145 0.6796 0.1628 -0.3731 -0.3370 'X-RAY DIFFRACTION' 2 ? refined 18.6398 31.3346 41.5795 0.1688 0.1353 0.1189 0.0027 -0.0090 -0.0026 0.3125 2.8892 2.7860 -0.5262 0.5105 -2.8285 0.2029 -0.0328 -0.1448 0.0837 0.0691 -0.0061 -0.4723 0.2926 0.2970 'X-RAY DIFFRACTION' 3 ? refined 23.6571 32.1294 22.2301 0.4150 0.2229 0.1861 0.0540 -0.0132 -0.0739 5.3265 2.3202 2.3015 0.7234 -1.7442 0.6872 0.3332 -0.1904 -0.1119 0.9735 -0.6715 0.1207 -0.9531 0.4797 -0.2974 'X-RAY DIFFRACTION' 4 ? refined 19.0029 31.1964 29.7365 0.3638 0.1696 0.3720 -0.0373 -0.0800 0.0078 1.7449 1.9033 1.4178 -0.4975 -0.7813 1.5434 0.0262 0.2049 -0.2075 0.0450 -0.7648 0.3867 -0.1100 0.3857 -0.1068 'X-RAY DIFFRACTION' 5 ? refined 19.0847 30.2705 56.4215 0.1992 0.1421 0.1224 -0.0451 0.0101 -0.0193 1.1628 2.6219 1.5193 -0.2283 -0.3996 -0.0573 0.0624 0.2793 -0.1700 -0.2648 0.1501 -0.4348 0.0928 -0.0830 0.2074 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 3 A 7 '( CHAIN A AND RESID 3:7 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 8 A 17 '( CHAIN A AND RESID 8:17 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 18 A 21 '( CHAIN A AND RESID 18:21 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 2 B 11 '( CHAIN B AND RESID 2:11 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 12 B 21 '( CHAIN B AND RESID 12:21 )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A C 2 ? ? P A C 3 ? ? 1.483 1.607 -0.124 0.012 Y 2 1 "O3'" B C 1 ? ? P B C 2 ? ? 1.481 1.607 -0.126 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A C 2 ? ? P A C 3 ? ? OP2 A C 3 ? ? 118.87 110.50 8.37 1.10 Y 2 1 OP1 A C 3 ? ? P A C 3 ? ? OP2 A C 3 ? ? 107.88 119.60 -11.72 1.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B C 1 ? "O5'" ? B C 1 "O5'" 2 1 Y 1 B C 1 ? "C5'" ? B C 1 "C5'" 3 1 Y 1 B C 1 ? "C4'" ? B C 1 "C4'" 4 1 Y 1 B C 1 ? "O4'" ? B C 1 "O4'" 5 1 Y 1 B C 1 ? "C3'" ? B C 1 "C3'" 6 1 Y 1 B C 1 ? "C2'" ? B C 1 "C2'" 7 1 Y 1 B C 1 ? "O2'" ? B C 1 "O2'" 8 1 Y 1 B C 1 ? "C1'" ? B C 1 "C1'" 9 1 Y 1 B C 1 ? N1 ? B C 1 N1 10 1 Y 1 B C 1 ? C2 ? B C 1 C2 11 1 Y 1 B C 1 ? O2 ? B C 1 O2 12 1 Y 1 B C 1 ? N3 ? B C 1 N3 13 1 Y 1 B C 1 ? C4 ? B C 1 C4 14 1 Y 1 B C 1 ? N4 ? B C 1 N4 15 1 Y 1 B C 1 ? C5 ? B C 1 C5 16 1 Y 1 B C 1 ? C6 ? B C 1 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 1 ? A C 1 2 1 Y 1 A C 22 ? A C 22 3 1 Y 1 B C 22 ? B C 22 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 C OP3 O N N 2 C P P N N 3 C OP1 O N N 4 C OP2 O N N 5 C "O5'" O N N 6 C "C5'" C N N 7 C "C4'" C N R 8 C "O4'" O N N 9 C "C3'" C N S 10 C "O3'" O N N 11 C "C2'" C N R 12 C "O2'" O N N 13 C "C1'" C N R 14 C N1 N N N 15 C C2 C N N 16 C O2 O N N 17 C N3 N N N 18 C C4 C N N 19 C N4 N N N 20 C C5 C N N 21 C C6 C N N 22 C HOP3 H N N 23 C HOP2 H N N 24 C "H5'" H N N 25 C "H5''" H N N 26 C "H4'" H N N 27 C "H3'" H N N 28 C "HO3'" H N N 29 C "H2'" H N N 30 C "HO2'" H N N 31 C "H1'" H N N 32 C H41 H N N 33 C H42 H N N 34 C H5 H N N 35 C H6 H N N 36 G OP3 O N N 37 G P P N N 38 G OP1 O N N 39 G OP2 O N N 40 G "O5'" O N N 41 G "C5'" C N N 42 G "C4'" C N R 43 G "O4'" O N N 44 G "C3'" C N S 45 G "O3'" O N N 46 G "C2'" C N R 47 G "O2'" O N N 48 G "C1'" C N R 49 G N9 N Y N 50 G C8 C Y N 51 G N7 N Y N 52 G C5 C Y N 53 G C6 C N N 54 G O6 O N N 55 G N1 N N N 56 G C2 C N N 57 G N2 N N N 58 G N3 N N N 59 G C4 C Y N 60 G HOP3 H N N 61 G HOP2 H N N 62 G "H5'" H N N 63 G "H5''" H N N 64 G "H4'" H N N 65 G "H3'" H N N 66 G "HO3'" H N N 67 G "H2'" H N N 68 G "HO2'" H N N 69 G "H1'" H N N 70 G H8 H N N 71 G H1 H N N 72 G H21 H N N 73 G H22 H N N 74 HOH O O N N 75 HOH H1 H N N 76 HOH H2 H N N 77 K K K N N 78 MG MG MG N N 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5EW7 'double helix' 5EW7 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 4 1_555 B C 21 1_555 -4.127 -1.321 0.463 8.560 -13.737 3.789 1 A_C4:C21_B A 4 ? B 21 ? ? ? 1 A G 5 1_555 B C 20 1_555 -0.384 -0.076 0.004 -0.351 -14.114 3.325 2 A_G5:C20_B A 5 ? B 20 ? 19 1 1 A G 6 1_555 B C 19 1_555 -0.192 -0.167 -0.321 -4.757 -8.370 -1.087 3 A_G6:C19_B A 6 ? B 19 ? 19 1 1 A C 7 1_555 B G 18 1_555 0.304 -0.130 -0.117 4.377 -10.816 2.841 4 A_C7:G18_B A 7 ? B 18 ? 19 1 1 A C 8 1_555 B G 17 1_555 0.183 -0.104 -0.261 1.274 -1.704 -2.508 5 A_C8:G17_B A 8 ? B 17 ? 19 1 1 A C 9 1_555 B C 16 1_555 3.851 -1.817 -0.386 6.286 -5.872 -15.598 6 A_C9:C16_B A 9 ? B 16 ? ? 1 1 A C 10 1_555 B C 15 1_555 -2.407 -1.677 0.373 -5.963 -16.264 13.063 7 A_C10:C15_B A 10 ? B 15 ? ? ? 1 A G 11 1_555 B C 14 1_555 -0.114 -0.207 -0.157 -3.622 -6.605 0.091 8 A_G11:C14_B A 11 ? B 14 ? 19 1 1 A G 12 1_555 B C 13 1_555 -0.189 -0.161 -0.247 -6.691 -7.272 0.609 9 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 0.276 -0.084 -0.102 2.816 -7.268 2.093 10 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A C 14 1_555 B G 11 1_555 0.234 -0.132 -0.147 -0.117 -4.490 -0.025 11 A_C14:G11_B A 14 ? B 11 ? 19 1 1 A C 15 1_555 B C 10 1_555 3.373 -1.455 -0.255 1.665 -2.438 -11.321 12 A_C15:C10_B A 15 ? B 10 ? ? 1 1 A C 16 1_555 B C 9 1_555 1.533 -1.040 -0.323 -15.680 -14.266 -7.677 13 A_C16:C9_B A 16 ? B 9 ? ? ? 1 A G 17 1_555 B C 8 1_555 -0.349 -0.069 -0.043 -3.511 -3.598 4.152 14 A_G17:C8_B A 17 ? B 8 ? 19 1 1 A G 18 1_555 B C 7 1_555 -0.438 -0.191 -0.048 -1.461 -8.561 -1.368 15 A_G18:C7_B A 18 ? B 7 ? 19 1 1 A C 19 1_555 B G 6 1_555 0.306 -0.115 -0.021 6.573 -8.516 0.709 16 A_C19:G6_B A 19 ? B 6 ? 19 1 1 A C 20 1_555 B G 5 1_555 0.425 -0.112 0.011 -1.837 -13.710 3.476 17 A_C20:G5_B A 20 ? B 5 ? 19 1 1 A C 21 1_555 B C 4 1_555 4.194 -1.206 0.341 -16.625 -14.076 6.333 18 A_C21:C4_B A 21 ? B 4 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 4 1_555 B C 21 1_555 A G 5 1_555 B C 20 1_555 0.104 -1.032 3.611 -2.344 9.359 47.397 -2.044 -0.324 3.354 11.504 2.881 48.314 1 AA_C4G5:C20C21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A G 5 1_555 B C 20 1_555 A G 6 1_555 B C 19 1_555 -0.597 -1.905 3.304 -1.911 9.355 29.784 -5.188 0.772 2.632 17.639 3.604 31.244 2 AA_G5G6:C19C20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A G 6 1_555 B C 19 1_555 A C 7 1_555 B G 18 1_555 0.545 -1.482 3.113 -0.019 2.855 33.007 -3.048 -0.959 2.978 5.013 0.034 33.127 3 AA_G6C7:G18C19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A C 7 1_555 B G 18 1_555 A C 8 1_555 B G 17 1_555 -0.441 -1.814 3.325 -0.040 7.783 29.923 -4.836 0.820 2.777 14.762 0.075 30.897 4 AA_C7C8:G17G18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A C 8 1_555 B G 17 1_555 A C 9 1_555 B C 16 1_555 -0.697 -1.279 3.281 3.227 5.464 46.665 -2.039 1.131 3.069 6.861 -4.052 47.071 5 AA_C8C9:C16G17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A C 9 1_555 B C 16 1_555 A C 10 1_555 B C 15 1_555 2.463 -1.850 3.174 5.572 16.672 13.964 -9.911 -4.614 1.225 49.154 -16.429 22.416 6 AA_C9C10:C15C16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A C 10 1_555 B C 15 1_555 A G 11 1_555 B C 14 1_555 -0.467 -0.950 3.209 1.232 10.308 40.583 -2.351 0.776 2.879 14.575 -1.742 41.835 7 AA_C10G11:C14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A G 11 1_555 B C 14 1_555 A G 12 1_555 B C 13 1_555 0.149 -1.963 3.336 1.267 4.863 29.659 -4.753 -0.034 2.987 9.415 -2.452 30.073 8 AA_G11G12:C13C14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 0.220 -1.786 3.083 -0.149 0.723 31.235 -3.445 -0.435 3.041 1.343 0.277 31.243 9 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A C 14 1_555 B G 11 1_555 -0.272 -1.993 3.298 -0.086 6.536 30.355 -4.912 0.492 2.818 12.304 0.162 31.034 10 AA_C13C14:G11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A C 14 1_555 B G 11 1_555 A C 15 1_555 B C 10 1_555 -0.660 -1.421 3.279 2.782 6.117 44.945 -2.365 1.093 3.026 7.949 -3.615 45.419 11 AA_C14C15:C10G11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 A C 15 1_555 B C 10 1_555 A C 16 1_555 B C 9 1_555 0.516 -2.363 3.776 9.398 16.461 29.689 -6.396 0.561 2.259 28.734 -16.405 35.109 12 AA_C15C16:C9C10_BB A 15 ? B 10 ? A 16 ? B 9 ? 1 A C 16 1_555 B C 9 1_555 A G 17 1_555 B C 8 1_555 0.794 -1.692 2.828 -0.915 10.976 19.330 -7.396 -2.310 1.604 29.764 2.480 22.222 13 AA_C16G17:C8C9_BB A 16 ? B 9 ? A 17 ? B 8 ? 1 A G 17 1_555 B C 8 1_555 A G 18 1_555 B C 7 1_555 -0.588 -1.804 3.135 0.238 6.547 30.587 -4.466 1.131 2.696 12.235 -0.445 31.264 14 AA_G17G18:C7C8_BB A 17 ? B 8 ? A 18 ? B 7 ? 1 A G 18 1_555 B C 7 1_555 A C 19 1_555 B G 6 1_555 0.298 -1.418 3.076 -0.026 3.276 33.475 -2.943 -0.519 2.928 5.670 0.046 33.630 15 AA_G18C19:G6C7_BB A 18 ? B 7 ? A 19 ? B 6 ? 1 A C 19 1_555 B G 6 1_555 A C 20 1_555 B G 5 1_555 0.598 -2.106 3.317 3.153 9.876 30.996 -5.336 -0.556 2.589 17.864 -5.704 32.643 16 AA_C19C20:G5G6_BB A 19 ? B 6 ? A 20 ? B 5 ? 1 A C 20 1_555 B G 5 1_555 A C 21 1_555 B C 4 1_555 0.022 -1.175 3.734 4.650 11.699 47.406 -2.396 0.362 3.360 14.259 -5.667 48.956 17 AA_C20C21:C4G5_BB A 20 ? B 5 ? A 21 ? B 4 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'MAGNESIUM ION' MG 4 'BARIUM ION' BA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5EW4 _pdbx_initial_refinement_model.details 'PDB entry 5EW4' #