data_5FT2 # _entry.id 5FT2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5FT2 PDBE EBI-65998 WWPDB D_1290065998 # _pdbx_database_related.db_name EMDB _pdbx_database_related.db_id EMD-3292 _pdbx_database_related.content_type 'associated EM volume' _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5FT2 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2016-01-09 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, S.' 1 'Zhaoyang, S.' 2 'Pryce, R.' 3 'Parsy, M.L.' 4 'Fehling, S.K.' 5 'Schlie, K.' 6 'Siebert, C.A.' 7 'Garten, W.' 8 'Bowden, T.A.' 9 'Strecker, T.' 10 'Huiskonen, J.T.' 11 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Acidic Ph-Induced Conformations and Lamp1 Binding of the Lassa Virus Glycoprotein Spike.' 'Plos Pathog.' 12 5418 ? 2016 ? US 1553-7366 ? ? 26849049 10.1371/JOURNAL.PPAT.1005418 1 'Molecular Mechanism for Lamp1 Recognition by Lassa Virus.' J.Virol. 89 7584 ? 2015 JOVIAM US 0022-538X 0825 ? 25972533 10.1128/JVI.00651-15 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, S.' 1 ? primary 'Sun, Z.' 2 ? primary 'Pryce, R.' 3 ? primary 'Parsy, M.' 4 ? primary 'Fehling, S.K.' 5 ? primary 'Schlie, K.' 6 ? primary 'Siebert, C.A.' 7 ? primary 'Garten, W.' 8 ? primary 'Bowden, T.A.' 9 ? primary 'Strecker, T.' 10 ? primary 'Huiskonen, J.T.' 11 ? 1 'Cohen-Dvashi, H.' 12 ? 1 'Cohen, N.' 13 ? 1 'Israeli, H.' 14 ? 1 'Diskin, R.' 15 ? # _cell.entry_id 5FT2 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FT2 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PRE-GLYCOPROTEIN POLYPROTEIN GP COMPLEX' 19379.693 1 ? ? 'RECEPTOR BINDING DOMAIN, UNP RESIDUES 75-237' ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 4 water nat water 18.015 23 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GP1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SHHHHHHGGMETLNMTMPLSCTKNNSHHYIMVGNETGLELTLTNTSIINHKFCNLSDAHKKNLYDHALMSIISTFHLSIP NFNQYEAMSCDFNGGKISVQYNLSHSYAGDAANHCGTVANGVLQTFMRMAWGGSYIALDSGRGNWDCIMTSYQYLIIQNT TWEDHCQFSRPS ; _entity_poly.pdbx_seq_one_letter_code_can ;SHHHHHHGGMETLNMTMPLSCTKNNSHHYIMVGNETGLELTLTNTSIINHKFCNLSDAHKKNLYDHALMSIISTFHLSIP NFNQYEAMSCDFNGGKISVQYNLSHSYAGDAANHCGTVANGVLQTFMRMAWGGSYIALDSGRGNWDCIMTSYQYLIIQNT TWEDHCQFSRPS ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLY n 1 9 GLY n 1 10 MET n 1 11 GLU n 1 12 THR n 1 13 LEU n 1 14 ASN n 1 15 MET n 1 16 THR n 1 17 MET n 1 18 PRO n 1 19 LEU n 1 20 SER n 1 21 CYS n 1 22 THR n 1 23 LYS n 1 24 ASN n 1 25 ASN n 1 26 SER n 1 27 HIS n 1 28 HIS n 1 29 TYR n 1 30 ILE n 1 31 MET n 1 32 VAL n 1 33 GLY n 1 34 ASN n 1 35 GLU n 1 36 THR n 1 37 GLY n 1 38 LEU n 1 39 GLU n 1 40 LEU n 1 41 THR n 1 42 LEU n 1 43 THR n 1 44 ASN n 1 45 THR n 1 46 SER n 1 47 ILE n 1 48 ILE n 1 49 ASN n 1 50 HIS n 1 51 LYS n 1 52 PHE n 1 53 CYS n 1 54 ASN n 1 55 LEU n 1 56 SER n 1 57 ASP n 1 58 ALA n 1 59 HIS n 1 60 LYS n 1 61 LYS n 1 62 ASN n 1 63 LEU n 1 64 TYR n 1 65 ASP n 1 66 HIS n 1 67 ALA n 1 68 LEU n 1 69 MET n 1 70 SER n 1 71 ILE n 1 72 ILE n 1 73 SER n 1 74 THR n 1 75 PHE n 1 76 HIS n 1 77 LEU n 1 78 SER n 1 79 ILE n 1 80 PRO n 1 81 ASN n 1 82 PHE n 1 83 ASN n 1 84 GLN n 1 85 TYR n 1 86 GLU n 1 87 ALA n 1 88 MET n 1 89 SER n 1 90 CYS n 1 91 ASP n 1 92 PHE n 1 93 ASN n 1 94 GLY n 1 95 GLY n 1 96 LYS n 1 97 ILE n 1 98 SER n 1 99 VAL n 1 100 GLN n 1 101 TYR n 1 102 ASN n 1 103 LEU n 1 104 SER n 1 105 HIS n 1 106 SER n 1 107 TYR n 1 108 ALA n 1 109 GLY n 1 110 ASP n 1 111 ALA n 1 112 ALA n 1 113 ASN n 1 114 HIS n 1 115 CYS n 1 116 GLY n 1 117 THR n 1 118 VAL n 1 119 ALA n 1 120 ASN n 1 121 GLY n 1 122 VAL n 1 123 LEU n 1 124 GLN n 1 125 THR n 1 126 PHE n 1 127 MET n 1 128 ARG n 1 129 MET n 1 130 ALA n 1 131 TRP n 1 132 GLY n 1 133 GLY n 1 134 SER n 1 135 TYR n 1 136 ILE n 1 137 ALA n 1 138 LEU n 1 139 ASP n 1 140 SER n 1 141 GLY n 1 142 ARG n 1 143 GLY n 1 144 ASN n 1 145 TRP n 1 146 ASP n 1 147 CYS n 1 148 ILE n 1 149 MET n 1 150 THR n 1 151 SER n 1 152 TYR n 1 153 GLN n 1 154 TYR n 1 155 LEU n 1 156 ILE n 1 157 ILE n 1 158 GLN n 1 159 ASN n 1 160 THR n 1 161 THR n 1 162 TRP n 1 163 GLU n 1 164 ASP n 1 165 HIS n 1 166 CYS n 1 167 GLN n 1 168 PHE n 1 169 SER n 1 170 ARG n 1 171 PRO n 1 172 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'LASSA MAMMARENAVIRUS, LASV' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain JOSIAH _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'LASSA VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11622 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'CABBAGE LOOPER' _entity_src_gen.pdbx_host_org_scientific_name 'TRICHOPLUSIA NI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLYC_LASSJ _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P08669 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5FT2 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 10 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08669 _struct_ref_seq.db_align_beg 75 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 237 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 75 _struct_ref_seq.pdbx_auth_seq_align_end 237 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5FT2 SER B 1 ? UNP P08669 ? ? 'expression tag' 66 1 1 5FT2 HIS B 2 ? UNP P08669 ? ? 'expression tag' 67 2 1 5FT2 HIS B 3 ? UNP P08669 ? ? 'expression tag' 68 3 1 5FT2 HIS B 4 ? UNP P08669 ? ? 'expression tag' 69 4 1 5FT2 HIS B 5 ? UNP P08669 ? ? 'expression tag' 70 5 1 5FT2 HIS B 6 ? UNP P08669 ? ? 'expression tag' 71 6 1 5FT2 HIS B 7 ? UNP P08669 ? ? 'expression tag' 72 7 1 5FT2 GLY B 8 ? UNP P08669 ? ? 'expression tag' 73 8 1 5FT2 GLY B 9 ? UNP P08669 ? ? 'expression tag' 74 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5FT2 _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 5FT2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 16.40 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1233 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 1340 _refine_hist.d_res_high 16.40 _refine_hist.d_res_low . # _struct.entry_id 5FT2 _struct.title 'Sub-tomogram averaging of Lassa virus glycoprotein spike from virus- like particles at pH 5' _struct.pdbx_descriptor 'PRE-GLYCOPROTEIN POLYPROTEIN GP COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5FT2 _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'CELL ADHESION, MEMBRANE PROTEIN, GLYCOPROTEIN, RECEPTOR BINDING, MEMBRANE FUSION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 57 ? PHE A 75 ? ASP B 122 PHE B 140 1 ? 19 HELX_P HELX_P2 2 TYR A 107 ? HIS A 114 ? TYR B 172 HIS B 179 1 ? 8 HELX_P HELX_P3 3 THR A 117 ? ALA A 130 ? THR B 182 ALA B 195 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 166 SG ? ? B CYS 86 B CYS 231 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? A CYS 53 SG ? ? ? 1_555 A CYS 90 SG ? ? B CYS 118 B CYS 155 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf3 disulf ? ? A CYS 115 SG ? ? ? 1_555 A CYS 147 SG ? ? B CYS 180 B CYS 212 1_555 ? ? ? ? ? ? ? 2.042 ? ? covale1 covale one ? A ASN 44 ND2 ? ? ? 1_555 B NAG . C1 ? ? B ASN 109 A NAG 1 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale2 covale one ? A ASN 54 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 119 B NAG 304 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation covale3 covale one ? A ASN 102 ND2 ? ? ? 1_555 C NAG . C1 ? ? B ASN 167 C NAG 1 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale4 covale one ? A ASN 159 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 224 B NAG 303 1_555 ? ? ? ? ? ? ? 1.431 ? N-Glycosylation covale5 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale6 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.442 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details BA ? 5 ? BB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BA 4 5 ? anti-parallel BB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id BA 1 SER A 26 ? ILE A 30 ? SER B 91 ILE B 95 BA 2 GLY A 37 ? THR A 43 ? GLY B 102 THR B 108 BA 3 TYR A 154 ? THR A 160 ? TYR B 219 THR B 225 BA 4 LYS A 96 ? ASN A 102 ? LYS B 161 ASN B 167 BA 5 ALA A 87 ? ASN A 93 ? ALA B 152 ASN B 158 BB 1 ILE A 136 ? ASP A 139 ? ILE B 201 ASP B 204 BB 2 ASP A 146 ? MET A 149 ? ASP B 211 MET B 214 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id BA 1 2 N ILE A 30 ? N ILE B 95 O LEU A 38 ? O LEU B 103 BA 2 3 N THR A 43 ? N THR B 108 O TYR A 154 ? O TYR B 219 BA 3 4 N ASN A 159 ? N ASN B 224 O ILE A 97 ? O ILE B 162 BA 4 5 N ASN A 102 ? N ASN B 167 O ALA A 87 ? O ALA B 152 BB 1 2 N LEU A 138 ? N LEU B 203 O CYS A 147 ? O CYS B 212 # _database_PDB_matrix.entry_id 5FT2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5FT2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 66 ? ? ? B . n A 1 2 HIS 2 67 ? ? ? B . n A 1 3 HIS 3 68 ? ? ? B . n A 1 4 HIS 4 69 ? ? ? B . n A 1 5 HIS 5 70 ? ? ? B . n A 1 6 HIS 6 71 ? ? ? B . n A 1 7 HIS 7 72 ? ? ? B . n A 1 8 GLY 8 73 ? ? ? B . n A 1 9 GLY 9 74 ? ? ? B . n A 1 10 MET 10 75 ? ? ? B . n A 1 11 GLU 11 76 ? ? ? B . n A 1 12 THR 12 77 ? ? ? B . n A 1 13 LEU 13 78 ? ? ? B . n A 1 14 ASN 14 79 ? ? ? B . n A 1 15 MET 15 80 ? ? ? B . n A 1 16 THR 16 81 81 THR THR B . n A 1 17 MET 17 82 82 MET MET B . n A 1 18 PRO 18 83 83 PRO PRO B . n A 1 19 LEU 19 84 84 LEU LEU B . n A 1 20 SER 20 85 85 SER SER B . n A 1 21 CYS 21 86 86 CYS CYS B . n A 1 22 THR 22 87 87 THR THR B . n A 1 23 LYS 23 88 88 LYS LYS B . n A 1 24 ASN 24 89 89 ASN ASN B . n A 1 25 ASN 25 90 90 ASN ASN B . n A 1 26 SER 26 91 91 SER SER B . n A 1 27 HIS 27 92 92 HIS HIS B . n A 1 28 HIS 28 93 93 HIS HIS B . n A 1 29 TYR 29 94 94 TYR TYR B . n A 1 30 ILE 30 95 95 ILE ILE B . n A 1 31 MET 31 96 96 MET MET B . n A 1 32 VAL 32 97 97 VAL VAL B . n A 1 33 GLY 33 98 98 GLY GLY B . n A 1 34 ASN 34 99 99 ASN ASN B . n A 1 35 GLU 35 100 100 GLU GLU B . n A 1 36 THR 36 101 101 THR THR B . n A 1 37 GLY 37 102 102 GLY GLY B . n A 1 38 LEU 38 103 103 LEU LEU B . n A 1 39 GLU 39 104 104 GLU GLU B . n A 1 40 LEU 40 105 105 LEU LEU B . n A 1 41 THR 41 106 106 THR THR B . n A 1 42 LEU 42 107 107 LEU LEU B . n A 1 43 THR 43 108 108 THR THR B . n A 1 44 ASN 44 109 109 ASN ASN B . n A 1 45 THR 45 110 110 THR THR B . n A 1 46 SER 46 111 111 SER SER B . n A 1 47 ILE 47 112 112 ILE ILE B . n A 1 48 ILE 48 113 113 ILE ILE B . n A 1 49 ASN 49 114 114 ASN ASN B . n A 1 50 HIS 50 115 115 HIS HIS B . n A 1 51 LYS 51 116 116 LYS LYS B . n A 1 52 PHE 52 117 117 PHE PHE B . n A 1 53 CYS 53 118 118 CYS CYS B . n A 1 54 ASN 54 119 119 ASN ASN B . n A 1 55 LEU 55 120 120 LEU LEU B . n A 1 56 SER 56 121 121 SER SER B . n A 1 57 ASP 57 122 122 ASP ASP B . n A 1 58 ALA 58 123 123 ALA ALA B . n A 1 59 HIS 59 124 124 HIS HIS B . n A 1 60 LYS 60 125 125 LYS LYS B . n A 1 61 LYS 61 126 126 LYS LYS B . n A 1 62 ASN 62 127 127 ASN ASN B . n A 1 63 LEU 63 128 128 LEU LEU B . n A 1 64 TYR 64 129 129 TYR TYR B . n A 1 65 ASP 65 130 130 ASP ASP B . n A 1 66 HIS 66 131 131 HIS HIS B . n A 1 67 ALA 67 132 132 ALA ALA B . n A 1 68 LEU 68 133 133 LEU LEU B . n A 1 69 MET 69 134 134 MET MET B . n A 1 70 SER 70 135 135 SER SER B . n A 1 71 ILE 71 136 136 ILE ILE B . n A 1 72 ILE 72 137 137 ILE ILE B . n A 1 73 SER 73 138 138 SER SER B . n A 1 74 THR 74 139 139 THR THR B . n A 1 75 PHE 75 140 140 PHE PHE B . n A 1 76 HIS 76 141 141 HIS HIS B . n A 1 77 LEU 77 142 142 LEU LEU B . n A 1 78 SER 78 143 143 SER SER B . n A 1 79 ILE 79 144 144 ILE ILE B . n A 1 80 PRO 80 145 145 PRO PRO B . n A 1 81 ASN 81 146 146 ASN ASN B . n A 1 82 PHE 82 147 147 PHE PHE B . n A 1 83 ASN 83 148 148 ASN ASN B . n A 1 84 GLN 84 149 149 GLN GLN B . n A 1 85 TYR 85 150 150 TYR TYR B . n A 1 86 GLU 86 151 151 GLU GLU B . n A 1 87 ALA 87 152 152 ALA ALA B . n A 1 88 MET 88 153 153 MET MET B . n A 1 89 SER 89 154 154 SER SER B . n A 1 90 CYS 90 155 155 CYS CYS B . n A 1 91 ASP 91 156 156 ASP ASP B . n A 1 92 PHE 92 157 157 PHE PHE B . n A 1 93 ASN 93 158 158 ASN ASN B . n A 1 94 GLY 94 159 159 GLY GLY B . n A 1 95 GLY 95 160 160 GLY GLY B . n A 1 96 LYS 96 161 161 LYS LYS B . n A 1 97 ILE 97 162 162 ILE ILE B . n A 1 98 SER 98 163 163 SER SER B . n A 1 99 VAL 99 164 164 VAL VAL B . n A 1 100 GLN 100 165 165 GLN GLN B . n A 1 101 TYR 101 166 166 TYR TYR B . n A 1 102 ASN 102 167 167 ASN ASN B . n A 1 103 LEU 103 168 168 LEU LEU B . n A 1 104 SER 104 169 169 SER SER B . n A 1 105 HIS 105 170 170 HIS HIS B . n A 1 106 SER 106 171 171 SER SER B . n A 1 107 TYR 107 172 172 TYR TYR B . n A 1 108 ALA 108 173 173 ALA ALA B . n A 1 109 GLY 109 174 174 GLY GLY B . n A 1 110 ASP 110 175 175 ASP ASP B . n A 1 111 ALA 111 176 176 ALA ALA B . n A 1 112 ALA 112 177 177 ALA ALA B . n A 1 113 ASN 113 178 178 ASN ASN B . n A 1 114 HIS 114 179 179 HIS HIS B . n A 1 115 CYS 115 180 180 CYS CYS B . n A 1 116 GLY 116 181 181 GLY GLY B . n A 1 117 THR 117 182 182 THR THR B . n A 1 118 VAL 118 183 183 VAL VAL B . n A 1 119 ALA 119 184 184 ALA ALA B . n A 1 120 ASN 120 185 185 ASN ASN B . n A 1 121 GLY 121 186 186 GLY GLY B . n A 1 122 VAL 122 187 187 VAL VAL B . n A 1 123 LEU 123 188 188 LEU LEU B . n A 1 124 GLN 124 189 189 GLN GLN B . n A 1 125 THR 125 190 190 THR THR B . n A 1 126 PHE 126 191 191 PHE PHE B . n A 1 127 MET 127 192 192 MET MET B . n A 1 128 ARG 128 193 193 ARG ARG B . n A 1 129 MET 129 194 194 MET MET B . n A 1 130 ALA 130 195 195 ALA ALA B . n A 1 131 TRP 131 196 196 TRP TRP B . n A 1 132 GLY 132 197 197 GLY GLY B . n A 1 133 GLY 133 198 198 GLY GLY B . n A 1 134 SER 134 199 199 SER SER B . n A 1 135 TYR 135 200 200 TYR TYR B . n A 1 136 ILE 136 201 201 ILE ILE B . n A 1 137 ALA 137 202 202 ALA ALA B . n A 1 138 LEU 138 203 203 LEU LEU B . n A 1 139 ASP 139 204 204 ASP ASP B . n A 1 140 SER 140 205 205 SER SER B . n A 1 141 GLY 141 206 206 GLY GLY B . n A 1 142 ARG 142 207 207 ARG ARG B . n A 1 143 GLY 143 208 208 GLY GLY B . n A 1 144 ASN 144 209 209 ASN ASN B . n A 1 145 TRP 145 210 210 TRP TRP B . n A 1 146 ASP 146 211 211 ASP ASP B . n A 1 147 CYS 147 212 212 CYS CYS B . n A 1 148 ILE 148 213 213 ILE ILE B . n A 1 149 MET 149 214 214 MET MET B . n A 1 150 THR 150 215 215 THR THR B . n A 1 151 SER 151 216 216 SER SER B . n A 1 152 TYR 152 217 217 TYR TYR B . n A 1 153 GLN 153 218 218 GLN GLN B . n A 1 154 TYR 154 219 219 TYR TYR B . n A 1 155 LEU 155 220 220 LEU LEU B . n A 1 156 ILE 156 221 221 ILE ILE B . n A 1 157 ILE 157 222 222 ILE ILE B . n A 1 158 GLN 158 223 223 GLN GLN B . n A 1 159 ASN 159 224 224 ASN ASN B . n A 1 160 THR 160 225 225 THR THR B . n A 1 161 THR 161 226 226 THR THR B . n A 1 162 TRP 162 227 227 TRP TRP B . n A 1 163 GLU 163 228 228 GLU GLU B . n A 1 164 ASP 164 229 229 ASP ASP B . n A 1 165 HIS 165 230 230 HIS HIS B . n A 1 166 CYS 166 231 231 CYS CYS B . n A 1 167 GLN 167 232 232 GLN GLN B . n A 1 168 PHE 168 233 233 PHE PHE B . n A 1 169 SER 169 234 234 SER SER B . n A 1 170 ARG 170 235 235 ARG ARG B . n A 1 171 PRO 171 236 236 PRO PRO B . n A 1 172 SER 172 237 237 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG 1 303 303 NAG NAG B . E 3 NAG 1 304 304 NAG NAG B . F 4 HOH 1 401 401 HOH HOH B . F 4 HOH 2 402 402 HOH HOH B . F 4 HOH 3 403 403 HOH HOH B . F 4 HOH 4 404 404 HOH HOH B . F 4 HOH 5 405 405 HOH HOH B . F 4 HOH 6 406 406 HOH HOH B . F 4 HOH 7 407 407 HOH HOH B . F 4 HOH 8 408 408 HOH HOH B . F 4 HOH 9 409 409 HOH HOH B . F 4 HOH 10 410 410 HOH HOH B . F 4 HOH 11 411 411 HOH HOH B . F 4 HOH 12 412 412 HOH HOH B . F 4 HOH 13 413 413 HOH HOH B . F 4 HOH 14 414 414 HOH HOH B . F 4 HOH 15 415 415 HOH HOH B . F 4 HOH 16 416 416 HOH HOH B . F 4 HOH 17 417 417 HOH HOH B . F 4 HOH 18 418 418 HOH HOH B . F 4 HOH 19 419 419 HOH HOH B . F 4 HOH 20 420 420 HOH HOH B . F 4 HOH 21 421 421 HOH HOH B . F 4 HOH 22 422 422 HOH HOH B . F 4 HOH 23 423 423 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 44 B ASN 109 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 54 B ASN 119 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 102 B ASN 167 ? ASN 'GLYCOSYLATION SITE' 4 A ASN 159 B ASN 224 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-02 2 'Structure model' 1 1 2017-08-02 3 'Structure model' 1 2 2017-08-30 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' em_3d_fitting 2 2 'Structure model' em_software 3 3 'Structure model' em_software 4 4 'Structure model' atom_site 5 4 'Structure model' chem_comp 6 4 'Structure model' entity 7 4 'Structure model' pdbx_branch_scheme 8 4 'Structure model' pdbx_chem_comp_identifier 9 4 'Structure model' pdbx_entity_branch 10 4 'Structure model' pdbx_entity_branch_descriptor 11 4 'Structure model' pdbx_entity_branch_link 12 4 'Structure model' pdbx_entity_branch_list 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_struct_assembly_gen 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_em_3d_fitting.target_criteria' 2 2 'Structure model' '_em_software.fitting_id' 3 2 'Structure model' '_em_software.image_processing_id' 4 2 'Structure model' '_em_software.name' 5 3 'Structure model' '_em_software.details' 6 3 'Structure model' '_em_software.name' 7 4 'Structure model' '_atom_site.B_iso_or_equiv' 8 4 'Structure model' '_atom_site.Cartn_x' 9 4 'Structure model' '_atom_site.Cartn_y' 10 4 'Structure model' '_atom_site.Cartn_z' 11 4 'Structure model' '_atom_site.auth_asym_id' 12 4 'Structure model' '_atom_site.auth_seq_id' 13 4 'Structure model' '_atom_site.label_asym_id' 14 4 'Structure model' '_atom_site.label_entity_id' 15 4 'Structure model' '_chem_comp.name' 16 4 'Structure model' '_chem_comp.type' 17 4 'Structure model' '_pdbx_entity_nonpoly.entity_id' 18 4 'Structure model' '_pdbx_entity_nonpoly.name' 19 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 20 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 21 4 'Structure model' '_struct_conn.pdbx_role' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 5FT2 _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details 'METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY' _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.pdb_entry_id 4ZJF _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.details ? # _em_3d_reconstruction.entry_id 5FT2 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 2578 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'TEMPLATE BASED' _em_3d_reconstruction.nominal_pixel_size 2.7 _em_3d_reconstruction.actual_pixel_size 2.7 _em_3d_reconstruction.resolution 16.4 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details 'SUB-TOMOGRAM AVERAGING SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-3292. (DEPOSITION ID: 14158).' _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '50 MM BUFFER OF SUCCINIC ACID, DIHYDROGEN PHOSPHATE AND GLYCINE (SPG)' _em_buffer.pH 5.2 _em_buffer.details '50 MM BUFFER OF SUCCINIC ACID, DIHYDROGEN PHOSPHATE AND GLYCINE (SPG)' # _em_entity_assembly.id 1 _em_entity_assembly.name 'PURIFIED LASSA VIRUS VLPS AT PH 5' _em_entity_assembly.type VIRUS _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5FT2 _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 16 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 5FT2 _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.date 2014-09-25 _em_imaging.temperature ? _em_imaging.microscope_model 'FEI TECNAI F30' _em_imaging.nominal_defocus_min 2800 _em_imaging.nominal_defocus_max 6700 _em_imaging.tilt_angle_min -45 _em_imaging.tilt_angle_max 45 _em_imaging.nominal_cs 2.0 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 160000 _em_imaging.calibrated_magnification 37037 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details 'SUPER-RESOLUTION COUNTING MODE' _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 5FT2 _em_vitrification.id 1 _em_vitrification.instrument 'GATAN CRYOPLUNGE 3' _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.specimen_id 1 _em_vitrification.details ;VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 80, TEMPERATURE- 120, INSTRUMENT- GATAN CRYOPLUNGE 3, METHOD- BLOT FOR 3 SECONDS BEFORE PLUNGING., ; _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5FT2 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method TOMOGRAPHY # _em_single_particle_entity.entry_id 5FT2 _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C3 _em_single_particle_entity.image_processing_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 420 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 422 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.04 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU B 120 ? ? -90.19 59.63 2 1 SER B 169 ? ? -110.85 68.92 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B SER 66 ? A SER 1 2 1 Y 1 B HIS 67 ? A HIS 2 3 1 Y 1 B HIS 68 ? A HIS 3 4 1 Y 1 B HIS 69 ? A HIS 4 5 1 Y 1 B HIS 70 ? A HIS 5 6 1 Y 1 B HIS 71 ? A HIS 6 7 1 Y 1 B HIS 72 ? A HIS 7 8 1 Y 1 B GLY 73 ? A GLY 8 9 1 Y 1 B GLY 74 ? A GLY 9 10 1 Y 1 B MET 75 ? A MET 10 11 1 Y 1 B GLU 76 ? A GLU 11 12 1 Y 1 B THR 77 ? A THR 12 13 1 Y 1 B LEU 78 ? A LEU 13 14 1 Y 1 B ASN 79 ? A ASN 14 15 1 Y 1 B MET 80 ? A MET 15 # _em_ctf_correction.id 1 _em_ctf_correction.details 'EACH TILTED IMAGE' _em_ctf_correction.type ? _em_ctf_correction.em_image_processing_id ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 'UCSF Chimera' ? 'MODEL FITTING' ? ? ? 1 2 Dynamo ? RECONSTRUCTION ? 1 ? ? 3 IMOD ? RECONSTRUCTION ? 1 ? ? 4 'UCSF Chimera' ? 'MODEL FITTING' Segger ? ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 A NAG 1 B NAG 301 n B 2 NAG 2 A NAG 2 B NAG 302 n C 2 NAG 1 C NAG 1 B NAG 305 n C 2 NAG 2 C NAG 2 B NAG 306 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #