data_5G36 # _entry.id 5G36 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5G36 PDBE EBI-66533 WWPDB D_1290066533 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 5G36 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2016-04-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schreiner, M.' 1 'Schlesinger, R.' 2 'Heberle, J.' 3 'Niemann, H.H.' 4 # _citation.id primary _citation.title 'Crystal Structure of Halobacterium Salinarum Halorhodopsin with Partially Depopulated Primary Chloride Binding Site' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 72 _citation.page_first 692 _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27599860 _citation.pdbx_database_id_DOI 10.1107/S2053230X16012796 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schreiner, M.' 1 ? primary 'Schlesinger, R.' 2 ? primary 'Heberle, J.' 3 ? primary 'Niemann, H.H.' 4 ? # _cell.entry_id 5G36 _cell.length_a 103.000 _cell.length_b 103.000 _cell.length_c 136.450 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5G36 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man HALORHODOPSIN 27945.709 1 ? ? 'RESIDUES 20-274' 'IMINE BOND (SCHIFF BASE) BETWEEN NZ OF LYS242 AND C15 OF THE RETINAL LIGAND' 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer man 'octyl beta-D-glucopyranoside' 292.369 1 ? ? ? ? 5 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAAVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAG EMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLSAL VTDWAASASSAGTAEIFDTLRVLTVVLWLGYPIVWAVGVEGLALVQSVGVTSWAYSVLDVFAKYVFAFILLRWVANNERT VAVAGQTLGTMSSDDHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;AAAVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAG EMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLSAL VTDWAASASSAGTAEIFDTLRVLTVVLWLGYPIVWAVGVEGLALVQSVGVTSWAYSVLDVFAKYVFAFILLRWVANNERT VAVAGQTLGTMSSDDHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 ALA n 1 4 VAL n 1 5 ARG n 1 6 GLU n 1 7 ASN n 1 8 ALA n 1 9 LEU n 1 10 LEU n 1 11 SER n 1 12 SER n 1 13 SER n 1 14 LEU n 1 15 TRP n 1 16 VAL n 1 17 ASN n 1 18 VAL n 1 19 ALA n 1 20 LEU n 1 21 ALA n 1 22 GLY n 1 23 ILE n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 VAL n 1 28 PHE n 1 29 VAL n 1 30 TYR n 1 31 MET n 1 32 GLY n 1 33 ARG n 1 34 THR n 1 35 ILE n 1 36 ARG n 1 37 PRO n 1 38 GLY n 1 39 ARG n 1 40 PRO n 1 41 ARG n 1 42 LEU n 1 43 ILE n 1 44 TRP n 1 45 GLY n 1 46 ALA n 1 47 THR n 1 48 LEU n 1 49 MET n 1 50 ILE n 1 51 PRO n 1 52 LEU n 1 53 VAL n 1 54 SER n 1 55 ILE n 1 56 SER n 1 57 SER n 1 58 TYR n 1 59 LEU n 1 60 GLY n 1 61 LEU n 1 62 LEU n 1 63 SER n 1 64 GLY n 1 65 LEU n 1 66 THR n 1 67 VAL n 1 68 GLY n 1 69 MET n 1 70 ILE n 1 71 GLU n 1 72 MET n 1 73 PRO n 1 74 ALA n 1 75 GLY n 1 76 HIS n 1 77 ALA n 1 78 LEU n 1 79 ALA n 1 80 GLY n 1 81 GLU n 1 82 MET n 1 83 VAL n 1 84 ARG n 1 85 SER n 1 86 GLN n 1 87 TRP n 1 88 GLY n 1 89 ARG n 1 90 TYR n 1 91 LEU n 1 92 THR n 1 93 TRP n 1 94 ALA n 1 95 LEU n 1 96 SER n 1 97 THR n 1 98 PRO n 1 99 MET n 1 100 ILE n 1 101 LEU n 1 102 LEU n 1 103 ALA n 1 104 LEU n 1 105 GLY n 1 106 LEU n 1 107 LEU n 1 108 ALA n 1 109 ASP n 1 110 VAL n 1 111 ASP n 1 112 LEU n 1 113 GLY n 1 114 SER n 1 115 LEU n 1 116 PHE n 1 117 THR n 1 118 VAL n 1 119 ILE n 1 120 ALA n 1 121 ALA n 1 122 ASP n 1 123 ILE n 1 124 GLY n 1 125 MET n 1 126 CYS n 1 127 VAL n 1 128 THR n 1 129 GLY n 1 130 LEU n 1 131 ALA n 1 132 ALA n 1 133 ALA n 1 134 MET n 1 135 THR n 1 136 THR n 1 137 SER n 1 138 ALA n 1 139 LEU n 1 140 LEU n 1 141 PHE n 1 142 ARG n 1 143 TRP n 1 144 ALA n 1 145 PHE n 1 146 TYR n 1 147 ALA n 1 148 ILE n 1 149 SER n 1 150 CYS n 1 151 ALA n 1 152 PHE n 1 153 PHE n 1 154 VAL n 1 155 VAL n 1 156 VAL n 1 157 LEU n 1 158 SER n 1 159 ALA n 1 160 LEU n 1 161 VAL n 1 162 THR n 1 163 ASP n 1 164 TRP n 1 165 ALA n 1 166 ALA n 1 167 SER n 1 168 ALA n 1 169 SER n 1 170 SER n 1 171 ALA n 1 172 GLY n 1 173 THR n 1 174 ALA n 1 175 GLU n 1 176 ILE n 1 177 PHE n 1 178 ASP n 1 179 THR n 1 180 LEU n 1 181 ARG n 1 182 VAL n 1 183 LEU n 1 184 THR n 1 185 VAL n 1 186 VAL n 1 187 LEU n 1 188 TRP n 1 189 LEU n 1 190 GLY n 1 191 TYR n 1 192 PRO n 1 193 ILE n 1 194 VAL n 1 195 TRP n 1 196 ALA n 1 197 VAL n 1 198 GLY n 1 199 VAL n 1 200 GLU n 1 201 GLY n 1 202 LEU n 1 203 ALA n 1 204 LEU n 1 205 VAL n 1 206 GLN n 1 207 SER n 1 208 VAL n 1 209 GLY n 1 210 VAL n 1 211 THR n 1 212 SER n 1 213 TRP n 1 214 ALA n 1 215 TYR n 1 216 SER n 1 217 VAL n 1 218 LEU n 1 219 ASP n 1 220 VAL n 1 221 PHE n 1 222 ALA n 1 223 LYS n 1 224 TYR n 1 225 VAL n 1 226 PHE n 1 227 ALA n 1 228 PHE n 1 229 ILE n 1 230 LEU n 1 231 LEU n 1 232 ARG n 1 233 TRP n 1 234 VAL n 1 235 ALA n 1 236 ASN n 1 237 ASN n 1 238 GLU n 1 239 ARG n 1 240 THR n 1 241 VAL n 1 242 ALA n 1 243 VAL n 1 244 ALA n 1 245 GLY n 1 246 GLN n 1 247 THR n 1 248 LEU n 1 249 GLY n 1 250 THR n 1 251 MET n 1 252 SER n 1 253 SER n 1 254 ASP n 1 255 ASP n 1 256 HIS n 1 257 HIS n 1 258 HIS n 1 259 HIS n 1 260 HIS n 1 261 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain L33 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HALOBACTERIUM SALINARUM' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2242 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'HALOBACTERIUM SALINARUM' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 2242 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain L33 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BACH_HALS3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession B0R2U4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5G36 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 255 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B0R2U4 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 274 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 20 _struct_ref_seq.pdbx_auth_seq_align_end 274 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5G36 HIS A 256 ? UNP B0R2U4 ? ? 'expression tag' 275 1 1 5G36 HIS A 257 ? UNP B0R2U4 ? ? 'expression tag' 276 2 1 5G36 HIS A 258 ? UNP B0R2U4 ? ? 'expression tag' 277 3 1 5G36 HIS A 259 ? UNP B0R2U4 ? ? 'expression tag' 278 4 1 5G36 HIS A 260 ? UNP B0R2U4 ? ? 'expression tag' 279 5 1 5G36 HIS A 261 ? UNP B0R2U4 ? ? 'expression tag' 280 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BOG D-saccharide n 'octyl beta-D-glucopyranoside' ? 'C14 H28 O6' 292.369 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 5G36 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 54.48 _exptl_crystal.description 'ISOMORPHOUS STRUCTURE OF CHLORIDE-BOUND HALORHODOPSIN, PDB ENTRY 5AHY' _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;RESERVOIR SOLUTION: 100 MM BICINE PH 8, 150 MM NACL, 2.4 M (NH4)2SO4. VAPOR DIFFUSION AT 296 K WITH DROP RATIO OF 1.2 TO 0.8 UL PROTEIN TO RESERVOIR. PROTEIN CONCENTRATION: 4.9 MG/ML. POST-CRYSTALLIZATION SOAKING SOLUTION: 100 MM GLYCINE PH 10, 2.6 M (NH4)2SO4 PH 10, 25% SUCROSE. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-08-05 _diffrn_detector.details 'BENDABLE MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'CRYSTAL SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9202 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 0.9202 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5G36 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.50 _reflns.d_resolution_high 2.60 _reflns.number_obs 8774 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.16 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.50 _reflns.B_iso_Wilson_estimate 31.77 _reflns.pdbx_redundancy 8.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.73 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.91 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.80 _reflns_shell.pdbx_redundancy 5.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5G36 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8763 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.393 _refine.ls_d_res_high 2.600 _refine.ls_percent_reflns_obs 99.80 _refine.ls_R_factor_obs 0.1943 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1912 _refine.ls_R_factor_R_free 0.2527 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 434 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.1 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'THE WHOLE SECTION C-TERMINAL TO ALA261 IS DISORDERED' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1822 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 1876 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 42.393 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1930 'X-RAY DIFFRACTION' ? f_angle_d 0.999 ? ? 2648 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.574 ? ? 1099 'X-RAY DIFFRACTION' ? f_chiral_restr 0.052 ? ? 329 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 316 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.6001 2.9763 2721 0.1992 100.00 0.2791 . . 149 . . 'X-RAY DIFFRACTION' . 2.9763 3.7494 2762 0.1885 100.00 0.2672 . . 141 . . 'X-RAY DIFFRACTION' . 3.7494 42.3988 2846 0.1895 100.00 0.2343 . . 144 . . # _struct.entry_id 5G36 _struct.title 'Yellow form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form' _struct.pdbx_descriptor HALORHODOPSIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 5G36 _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;MEMBRANE PROTEIN, TRANSPORT PROTEIN, HALOPHILIC ARCHAEA, ARCHAEAL RHODOPSIN, LIGHT DRIVEN ION PUMP, RETINAL PROTEIN, ION TRANSMEMBRANE TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 2 ? ARG A 33 ? ALA A 21 ARG A 52 1 ? 32 HELX_P HELX_P2 2 GLY A 38 ? SER A 63 ? GLY A 57 SER A 82 1 ? 26 HELX_P HELX_P3 3 TRP A 87 ? ASP A 109 ? TRP A 106 ASP A 128 1 ? 23 HELX_P HELX_P4 4 ASP A 111 ? THR A 135 ? ASP A 130 THR A 154 1 ? 25 HELX_P HELX_P5 5 ALA A 138 ? THR A 162 ? ALA A 157 THR A 181 1 ? 25 HELX_P HELX_P6 6 THR A 162 ? SER A 170 ? THR A 181 SER A 189 1 ? 9 HELX_P HELX_P7 7 THR A 173 ? GLY A 198 ? THR A 192 GLY A 217 1 ? 26 HELX_P HELX_P8 8 SER A 207 ? LYS A 223 ? SER A 226 LYS A 242 1 ? 17 HELX_P HELX_P9 9 LYS A 223 ? ASN A 237 ? LYS A 242 ASN A 256 1 ? 15 HELX_P HELX_P10 10 ASN A 237 ? ALA A 242 ? ASN A 256 ALA A 261 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 223 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 242 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 1262 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.384 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 68 ? GLU A 71 ? GLY A 87 GLU A 90 AA 2 MET A 82 ? SER A 85 ? MET A 101 SER A 104 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ILE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 70 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 89 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 83 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 102 # _database_PDB_matrix.entry_id 5G36 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5G36 _atom_sites.fract_transf_matrix[1][1] 0.009709 _atom_sites.fract_transf_matrix[1][2] 0.005605 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011211 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007329 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 20 20 ALA ALA A . n A 1 2 ALA 2 21 21 ALA ALA A . n A 1 3 ALA 3 22 22 ALA ALA A . n A 1 4 VAL 4 23 23 VAL VAL A . n A 1 5 ARG 5 24 24 ARG ARG A . n A 1 6 GLU 6 25 25 GLU GLU A . n A 1 7 ASN 7 26 26 ASN ASN A . n A 1 8 ALA 8 27 27 ALA ALA A . n A 1 9 LEU 9 28 28 LEU LEU A . n A 1 10 LEU 10 29 29 LEU LEU A . n A 1 11 SER 11 30 30 SER SER A . n A 1 12 SER 12 31 31 SER SER A . n A 1 13 SER 13 32 32 SER SER A . n A 1 14 LEU 14 33 33 LEU LEU A . n A 1 15 TRP 15 34 34 TRP TRP A . n A 1 16 VAL 16 35 35 VAL VAL A . n A 1 17 ASN 17 36 36 ASN ASN A . n A 1 18 VAL 18 37 37 VAL VAL A . n A 1 19 ALA 19 38 38 ALA ALA A . n A 1 20 LEU 20 39 39 LEU LEU A . n A 1 21 ALA 21 40 40 ALA ALA A . n A 1 22 GLY 22 41 41 GLY GLY A . n A 1 23 ILE 23 42 42 ILE ILE A . n A 1 24 ALA 24 43 43 ALA ALA A . n A 1 25 ILE 25 44 44 ILE ILE A . n A 1 26 LEU 26 45 45 LEU LEU A . n A 1 27 VAL 27 46 46 VAL VAL A . n A 1 28 PHE 28 47 47 PHE PHE A . n A 1 29 VAL 29 48 48 VAL VAL A . n A 1 30 TYR 30 49 49 TYR TYR A . n A 1 31 MET 31 50 50 MET MET A . n A 1 32 GLY 32 51 51 GLY GLY A . n A 1 33 ARG 33 52 52 ARG ARG A . n A 1 34 THR 34 53 53 THR THR A . n A 1 35 ILE 35 54 54 ILE ILE A . n A 1 36 ARG 36 55 55 ARG ARG A . n A 1 37 PRO 37 56 56 PRO PRO A . n A 1 38 GLY 38 57 57 GLY GLY A . n A 1 39 ARG 39 58 58 ARG ARG A . n A 1 40 PRO 40 59 59 PRO PRO A . n A 1 41 ARG 41 60 60 ARG ARG A . n A 1 42 LEU 42 61 61 LEU LEU A . n A 1 43 ILE 43 62 62 ILE ILE A . n A 1 44 TRP 44 63 63 TRP TRP A . n A 1 45 GLY 45 64 64 GLY GLY A . n A 1 46 ALA 46 65 65 ALA ALA A . n A 1 47 THR 47 66 66 THR THR A . n A 1 48 LEU 48 67 67 LEU LEU A . n A 1 49 MET 49 68 68 MET MET A . n A 1 50 ILE 50 69 69 ILE ILE A . n A 1 51 PRO 51 70 70 PRO PRO A . n A 1 52 LEU 52 71 71 LEU LEU A . n A 1 53 VAL 53 72 72 VAL VAL A . n A 1 54 SER 54 73 73 SER SER A . n A 1 55 ILE 55 74 74 ILE ILE A . n A 1 56 SER 56 75 75 SER SER A . n A 1 57 SER 57 76 76 SER SER A . n A 1 58 TYR 58 77 77 TYR TYR A . n A 1 59 LEU 59 78 78 LEU LEU A . n A 1 60 GLY 60 79 79 GLY GLY A . n A 1 61 LEU 61 80 80 LEU LEU A . n A 1 62 LEU 62 81 81 LEU LEU A . n A 1 63 SER 63 82 82 SER SER A . n A 1 64 GLY 64 83 83 GLY GLY A . n A 1 65 LEU 65 84 84 LEU LEU A . n A 1 66 THR 66 85 85 THR THR A . n A 1 67 VAL 67 86 86 VAL VAL A . n A 1 68 GLY 68 87 87 GLY GLY A . n A 1 69 MET 69 88 88 MET MET A . n A 1 70 ILE 70 89 89 ILE ILE A . n A 1 71 GLU 71 90 90 GLU GLU A . n A 1 72 MET 72 91 91 MET MET A . n A 1 73 PRO 73 92 92 PRO PRO A . n A 1 74 ALA 74 93 93 ALA ALA A . n A 1 75 GLY 75 94 94 GLY GLY A . n A 1 76 HIS 76 95 95 HIS HIS A . n A 1 77 ALA 77 96 96 ALA ALA A . n A 1 78 LEU 78 97 97 LEU LEU A . n A 1 79 ALA 79 98 98 ALA ALA A . n A 1 80 GLY 80 99 99 GLY GLY A . n A 1 81 GLU 81 100 100 GLU GLU A . n A 1 82 MET 82 101 101 MET MET A . n A 1 83 VAL 83 102 102 VAL VAL A . n A 1 84 ARG 84 103 103 ARG ARG A . n A 1 85 SER 85 104 104 SER SER A . n A 1 86 GLN 86 105 105 GLN GLN A . n A 1 87 TRP 87 106 106 TRP TRP A . n A 1 88 GLY 88 107 107 GLY GLY A . n A 1 89 ARG 89 108 108 ARG ARG A . n A 1 90 TYR 90 109 109 TYR TYR A . n A 1 91 LEU 91 110 110 LEU LEU A . n A 1 92 THR 92 111 111 THR THR A . n A 1 93 TRP 93 112 112 TRP TRP A . n A 1 94 ALA 94 113 113 ALA ALA A . n A 1 95 LEU 95 114 114 LEU LEU A . n A 1 96 SER 96 115 115 SER SER A . n A 1 97 THR 97 116 116 THR THR A . n A 1 98 PRO 98 117 117 PRO PRO A . n A 1 99 MET 99 118 118 MET MET A . n A 1 100 ILE 100 119 119 ILE ILE A . n A 1 101 LEU 101 120 120 LEU LEU A . n A 1 102 LEU 102 121 121 LEU LEU A . n A 1 103 ALA 103 122 122 ALA ALA A . n A 1 104 LEU 104 123 123 LEU LEU A . n A 1 105 GLY 105 124 124 GLY GLY A . n A 1 106 LEU 106 125 125 LEU LEU A . n A 1 107 LEU 107 126 126 LEU LEU A . n A 1 108 ALA 108 127 127 ALA ALA A . n A 1 109 ASP 109 128 128 ASP ASP A . n A 1 110 VAL 110 129 129 VAL VAL A . n A 1 111 ASP 111 130 130 ASP ASP A . n A 1 112 LEU 112 131 131 LEU LEU A . n A 1 113 GLY 113 132 132 GLY GLY A . n A 1 114 SER 114 133 133 SER SER A . n A 1 115 LEU 115 134 134 LEU LEU A . n A 1 116 PHE 116 135 135 PHE PHE A . n A 1 117 THR 117 136 136 THR THR A . n A 1 118 VAL 118 137 137 VAL VAL A . n A 1 119 ILE 119 138 138 ILE ILE A . n A 1 120 ALA 120 139 139 ALA ALA A . n A 1 121 ALA 121 140 140 ALA ALA A . n A 1 122 ASP 122 141 141 ASP ASP A . n A 1 123 ILE 123 142 142 ILE ILE A . n A 1 124 GLY 124 143 143 GLY GLY A . n A 1 125 MET 125 144 144 MET MET A . n A 1 126 CYS 126 145 145 CYS CYS A . n A 1 127 VAL 127 146 146 VAL VAL A . n A 1 128 THR 128 147 147 THR THR A . n A 1 129 GLY 129 148 148 GLY GLY A . n A 1 130 LEU 130 149 149 LEU LEU A . n A 1 131 ALA 131 150 150 ALA ALA A . n A 1 132 ALA 132 151 151 ALA ALA A . n A 1 133 ALA 133 152 152 ALA ALA A . n A 1 134 MET 134 153 153 MET MET A . n A 1 135 THR 135 154 154 THR THR A . n A 1 136 THR 136 155 155 THR THR A . n A 1 137 SER 137 156 156 SER SER A . n A 1 138 ALA 138 157 157 ALA ALA A . n A 1 139 LEU 139 158 158 LEU LEU A . n A 1 140 LEU 140 159 159 LEU LEU A . n A 1 141 PHE 141 160 160 PHE PHE A . n A 1 142 ARG 142 161 161 ARG ARG A . n A 1 143 TRP 143 162 162 TRP TRP A . n A 1 144 ALA 144 163 163 ALA ALA A . n A 1 145 PHE 145 164 164 PHE PHE A . n A 1 146 TYR 146 165 165 TYR TYR A . n A 1 147 ALA 147 166 166 ALA ALA A . n A 1 148 ILE 148 167 167 ILE ILE A . n A 1 149 SER 149 168 168 SER SER A . n A 1 150 CYS 150 169 169 CYS CYS A . n A 1 151 ALA 151 170 170 ALA ALA A . n A 1 152 PHE 152 171 171 PHE PHE A . n A 1 153 PHE 153 172 172 PHE PHE A . n A 1 154 VAL 154 173 173 VAL VAL A . n A 1 155 VAL 155 174 174 VAL VAL A . n A 1 156 VAL 156 175 175 VAL VAL A . n A 1 157 LEU 157 176 176 LEU LEU A . n A 1 158 SER 158 177 177 SER SER A . n A 1 159 ALA 159 178 178 ALA ALA A . n A 1 160 LEU 160 179 179 LEU LEU A . n A 1 161 VAL 161 180 180 VAL VAL A . n A 1 162 THR 162 181 181 THR THR A . n A 1 163 ASP 163 182 182 ASP ASP A . n A 1 164 TRP 164 183 183 TRP TRP A . n A 1 165 ALA 165 184 184 ALA ALA A . n A 1 166 ALA 166 185 185 ALA ALA A . n A 1 167 SER 167 186 186 SER SER A . n A 1 168 ALA 168 187 187 ALA ALA A . n A 1 169 SER 169 188 188 SER SER A . n A 1 170 SER 170 189 189 SER SER A . n A 1 171 ALA 171 190 190 ALA ALA A . n A 1 172 GLY 172 191 191 GLY GLY A . n A 1 173 THR 173 192 192 THR THR A . n A 1 174 ALA 174 193 193 ALA ALA A . n A 1 175 GLU 175 194 194 GLU GLU A . n A 1 176 ILE 176 195 195 ILE ILE A . n A 1 177 PHE 177 196 196 PHE PHE A . n A 1 178 ASP 178 197 197 ASP ASP A . n A 1 179 THR 179 198 198 THR THR A . n A 1 180 LEU 180 199 199 LEU LEU A . n A 1 181 ARG 181 200 200 ARG ARG A . n A 1 182 VAL 182 201 201 VAL VAL A . n A 1 183 LEU 183 202 202 LEU LEU A . n A 1 184 THR 184 203 203 THR THR A . n A 1 185 VAL 185 204 204 VAL VAL A . n A 1 186 VAL 186 205 205 VAL VAL A . n A 1 187 LEU 187 206 206 LEU LEU A . n A 1 188 TRP 188 207 207 TRP TRP A . n A 1 189 LEU 189 208 208 LEU LEU A . n A 1 190 GLY 190 209 209 GLY GLY A . n A 1 191 TYR 191 210 210 TYR TYR A . n A 1 192 PRO 192 211 211 PRO PRO A . n A 1 193 ILE 193 212 212 ILE ILE A . n A 1 194 VAL 194 213 213 VAL VAL A . n A 1 195 TRP 195 214 214 TRP TRP A . n A 1 196 ALA 196 215 215 ALA ALA A . n A 1 197 VAL 197 216 216 VAL VAL A . n A 1 198 GLY 198 217 217 GLY GLY A . n A 1 199 VAL 199 218 218 VAL VAL A . n A 1 200 GLU 200 219 219 GLU GLU A . n A 1 201 GLY 201 220 220 GLY GLY A . n A 1 202 LEU 202 221 221 LEU LEU A . n A 1 203 ALA 203 222 222 ALA ALA A . n A 1 204 LEU 204 223 223 LEU LEU A . n A 1 205 VAL 205 224 224 VAL VAL A . n A 1 206 GLN 206 225 225 GLN GLN A . n A 1 207 SER 207 226 226 SER SER A . n A 1 208 VAL 208 227 227 VAL VAL A . n A 1 209 GLY 209 228 228 GLY GLY A . n A 1 210 VAL 210 229 229 VAL VAL A . n A 1 211 THR 211 230 230 THR THR A . n A 1 212 SER 212 231 231 SER SER A . n A 1 213 TRP 213 232 232 TRP TRP A . n A 1 214 ALA 214 233 233 ALA ALA A . n A 1 215 TYR 215 234 234 TYR TYR A . n A 1 216 SER 216 235 235 SER SER A . n A 1 217 VAL 217 236 236 VAL VAL A . n A 1 218 LEU 218 237 237 LEU LEU A . n A 1 219 ASP 219 238 238 ASP ASP A . n A 1 220 VAL 220 239 239 VAL VAL A . n A 1 221 PHE 221 240 240 PHE PHE A . n A 1 222 ALA 222 241 241 ALA ALA A . n A 1 223 LYS 223 242 242 LYS LYS A . n A 1 224 TYR 224 243 243 TYR TYR A . n A 1 225 VAL 225 244 244 VAL VAL A . n A 1 226 PHE 226 245 245 PHE PHE A . n A 1 227 ALA 227 246 246 ALA ALA A . n A 1 228 PHE 228 247 247 PHE PHE A . n A 1 229 ILE 229 248 248 ILE ILE A . n A 1 230 LEU 230 249 249 LEU LEU A . n A 1 231 LEU 231 250 250 LEU LEU A . n A 1 232 ARG 232 251 251 ARG ARG A . n A 1 233 TRP 233 252 252 TRP TRP A . n A 1 234 VAL 234 253 253 VAL VAL A . n A 1 235 ALA 235 254 254 ALA ALA A . n A 1 236 ASN 236 255 255 ASN ASN A . n A 1 237 ASN 237 256 256 ASN ASN A . n A 1 238 GLU 238 257 257 GLU GLU A . n A 1 239 ARG 239 258 258 ARG ARG A . n A 1 240 THR 240 259 259 THR THR A . n A 1 241 VAL 241 260 260 VAL VAL A . n A 1 242 ALA 242 261 261 ALA ALA A . n A 1 243 VAL 243 262 ? ? ? A . n A 1 244 ALA 244 263 ? ? ? A . n A 1 245 GLY 245 264 ? ? ? A . n A 1 246 GLN 246 265 ? ? ? A . n A 1 247 THR 247 266 ? ? ? A . n A 1 248 LEU 248 267 ? ? ? A . n A 1 249 GLY 249 268 ? ? ? A . n A 1 250 THR 250 269 ? ? ? A . n A 1 251 MET 251 270 ? ? ? A . n A 1 252 SER 252 271 ? ? ? A . n A 1 253 SER 253 272 ? ? ? A . n A 1 254 ASP 254 273 ? ? ? A . n A 1 255 ASP 255 274 ? ? ? A . n A 1 256 HIS 256 275 ? ? ? A . n A 1 257 HIS 257 276 ? ? ? A . n A 1 258 HIS 258 277 ? ? ? A . n A 1 259 HIS 259 278 ? ? ? A . n A 1 260 HIS 260 279 ? ? ? A . n A 1 261 HIS 261 280 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET 1 1262 1262 RET RET A . C 3 CL 1 1263 1263 CL CL A . D 4 BOG 1 1264 1264 BOG BOG A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7840 ? 1 MORE -112.5 ? 1 'SSA (A^2)' 27930 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-31 2 'Structure model' 1 1 2016-09-14 3 'Structure model' 1 2 2016-10-05 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2019-09-25 6 'Structure model' 1 5 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Experimental preparation' 9 5 'Structure model' Other 10 6 'Structure model' 'Data collection' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' struct_conn 5 5 'Structure model' exptl_crystal_grow 6 5 'Structure model' pdbx_database_status 7 6 'Structure model' chem_comp 8 6 'Structure model' entity 9 6 'Structure model' pdbx_chem_comp_identifier 10 6 'Structure model' pdbx_entity_nonpoly 11 6 'Structure model' struct_site 12 6 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_exptl_crystal_grow.method' 5 5 'Structure model' '_pdbx_database_status.status_code_sf' 6 6 'Structure model' '_chem_comp.mon_nstd_flag' 7 6 'Structure model' '_chem_comp.name' 8 6 'Structure model' '_chem_comp.type' 9 6 'Structure model' '_entity.pdbx_description' 10 6 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE)' ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XSCALE 'data scaling' . ? 3 ? ? ? ? PHENIX phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 5G36 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AMINO ACIDS 1-19 ARE MISSING (CLEAVED SIGNAL PEPTIDE), C- TERMINAL HEXAHISTIDIN-TAG ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 219 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2008 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.02 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 181 ? ? -126.36 -79.26 2 1 LYS A 242 ? ? -104.37 -67.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 262 ? A VAL 243 2 1 Y 1 A ALA 263 ? A ALA 244 3 1 Y 1 A GLY 264 ? A GLY 245 4 1 Y 1 A GLN 265 ? A GLN 246 5 1 Y 1 A THR 266 ? A THR 247 6 1 Y 1 A LEU 267 ? A LEU 248 7 1 Y 1 A GLY 268 ? A GLY 249 8 1 Y 1 A THR 269 ? A THR 250 9 1 Y 1 A MET 270 ? A MET 251 10 1 Y 1 A SER 271 ? A SER 252 11 1 Y 1 A SER 272 ? A SER 253 12 1 Y 1 A ASP 273 ? A ASP 254 13 1 Y 1 A ASP 274 ? A ASP 255 14 1 Y 1 A HIS 275 ? A HIS 256 15 1 Y 1 A HIS 276 ? A HIS 257 16 1 Y 1 A HIS 277 ? A HIS 258 17 1 Y 1 A HIS 278 ? A HIS 259 18 1 Y 1 A HIS 279 ? A HIS 260 19 1 Y 1 A HIS 280 ? A HIS 261 # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier b-octylglucoside # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINAL RET 3 'CHLORIDE ION' CL 4 'octyl beta-D-glucopyranoside' BOG 5 water HOH #