HEADER HYDROLASE/HYDROLASE INHIBITOR 28-JAN-16 5HVF TITLE CRYSTAL STRUCTURE OF THROMBIN-ACTIVATABLE FIBRINOLYSIS INHIBITOR IN TITLE 2 COMPLEX WITH AN INHIBITORY NANOBODY (VHH-I83) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE B2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-423; COMPND 5 SYNONYM: CARBOXYPEPTIDASE U,CPU,PLASMA CARBOXYPEPTIDASE B,PCPB, COMPND 6 THROMBIN-ACTIVABLE FIBRINOLYSIS INHIBITOR,TAFI; COMPND 7 EC: 3.4.17.20; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: VHH-I83; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CPB2; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPIC9; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 13 ORGANISM_COMMON: ALPACA; SOURCE 14 ORGANISM_TAXID: 30538; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 PLYSS; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PETHSUK KEYWDS PROCARBOXYPEPTIDASE U, THROMBIN-ACTIVATABLE FIBRINOLYSIS INHIBITOR, KEYWDS 2 TAFI, PROCARBOXYPEPTIDASE R, PLASMA PROCARBOXYPEPTIDASE B, NANOBODY, KEYWDS 3 ANTIBODY FRAGMENT, PROTEIN COMPLEX, HYDROLASE/HYDROLASE INHIBITOR, KEYWDS 4 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHOU,S.D.WEEKS,S.V.STRELKOV,P.J.DECLERCK REVDAT 5 10-JAN-24 5HVF 1 HETSYN LINK REVDAT 4 29-JUL-20 5HVF 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 31-AUG-16 5HVF 1 JRNL REVDAT 2 03-AUG-16 5HVF 1 JRNL REVDAT 1 22-JUN-16 5HVF 0 JRNL AUTH X.ZHOU,S.D.WEEKS,P.AMELOOT,N.CALLEWAERT,S.V.STRELKOV, JRNL AUTH 2 P.J.DECLERCK JRNL TITL ELUCIDATION OF THE MOLECULAR MECHANISMS OF TWO NANOBODIES JRNL TITL 2 THAT INHIBIT THROMBIN-ACTIVATABLE FIBRINOLYSIS INHIBITOR JRNL TITL 3 ACTIVATION AND ACTIVATED THROMBIN-ACTIVATABLE FIBRINOLYSIS JRNL TITL 4 INHIBITOR ACTIVITY. JRNL REF J.THROMB.HAEMOST. V. 14 1629 2016 JRNL REFN ESSN 1538-7836 JRNL PMID 27279497 JRNL DOI 10.1111/JTH.13381 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 13156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 634 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.20 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2703 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2242 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2575 REMARK 3 BIN R VALUE (WORKING SET) : 0.2215 REMARK 3 BIN FREE R VALUE : 0.2819 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.74 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 128 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -21.87310 REMARK 3 B22 (A**2) : 5.40570 REMARK 3 B33 (A**2) : 16.46740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.347 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.371 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4140 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5639 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1418 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 603 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4140 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 549 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4815 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.16 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.28 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|2 - 399} REMARK 3 ORIGIN FOR THE GROUP (A): -11.1329 -3.1782 10.4899 REMARK 3 T TENSOR REMARK 3 T11: -0.1355 T22: -0.1908 REMARK 3 T33: -0.0684 T12: -0.1067 REMARK 3 T13: -0.0437 T23: 0.1220 REMARK 3 L TENSOR REMARK 3 L11: 2.2676 L22: 1.1394 REMARK 3 L33: 3.0398 L12: 0.3615 REMARK 3 L13: 1.2767 L23: 0.5511 REMARK 3 S TENSOR REMARK 3 S11: -0.3307 S12: 0.5442 S13: 0.4589 REMARK 3 S21: -0.3479 S22: 0.1677 S23: 0.0698 REMARK 3 S31: -0.2586 S32: 0.2267 S33: 0.1630 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|2 - 119} REMARK 3 ORIGIN FOR THE GROUP (A): -5.2264 8.6547 44.7012 REMARK 3 T TENSOR REMARK 3 T11: -0.0585 T22: -0.2005 REMARK 3 T33: 0.1053 T12: 0.0118 REMARK 3 T13: 0.0023 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.7045 L22: 2.8723 REMARK 3 L33: 1.5173 L12: 1.3255 REMARK 3 L13: 0.3161 L23: 2.6665 REMARK 3 S TENSOR REMARK 3 S11: 0.1406 S12: -0.0392 S13: 0.0469 REMARK 3 S21: 0.2107 S22: -0.2135 S23: 0.3647 REMARK 3 S31: -0.0331 S32: -0.1192 S33: 0.0729 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5HVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-16. REMARK 100 THE DEPOSITION ID IS D_1000217769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.83800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P10 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, 25 % W/V PEG 3350, REMARK 280 PH 3.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.64500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.66850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.98900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.66850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.64500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.98900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 1 REMARK 465 SER A 142 REMARK 465 GLY A 143 REMARK 465 LYS A 144 REMARK 465 GLU A 145 REMARK 465 GLN A 146 REMARK 465 ALA A 147 REMARK 465 ALA A 148 REMARK 465 LYS A 149 REMARK 465 ASN A 150 REMARK 465 THR A 177 REMARK 465 GLN A 178 REMARK 465 PHE A 179 REMARK 465 TYR A 180 REMARK 465 GLY A 181 REMARK 465 ILE A 182 REMARK 465 ILE A 183 REMARK 465 GLY A 184 REMARK 465 GLN A 185 REMARK 465 TYR A 186 REMARK 465 THR A 187 REMARK 465 ASN A 188 REMARK 465 LEU A 189 REMARK 465 LEU A 190 REMARK 465 ARG A 191 REMARK 465 LEU A 192 REMARK 465 VAL A 193 REMARK 465 ASN A 400 REMARK 465 VAL A 401 REMARK 465 GLN B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 212 -44.96 -130.21 REMARK 500 GLU A 244 -150.24 -96.44 REMARK 500 SER A 291 -11.94 124.51 REMARK 500 LEU A 340 -93.76 -104.98 REMARK 500 ALA A 343 80.80 -151.05 REMARK 500 ASP A 366 -140.55 -108.77 REMARK 500 LEU A 373 51.50 -97.76 REMARK 500 VAL B 48 -70.54 -91.37 REMARK 500 ARG B 65 -43.64 -144.10 REMARK 500 ASN B 75 60.02 32.01 REMARK 500 GLU B 87 -8.30 -55.65 REMARK 500 TRP B 102 -65.32 -100.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 508 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 159 ND1 REMARK 620 2 GLU A 162 OE1 111.8 REMARK 620 3 GLU A 162 OE2 95.0 56.0 REMARK 620 4 FLC A 509 OA1 81.2 153.4 101.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HVG RELATED DB: PDB REMARK 900 RELATED ID: 5HVH RELATED DB: PDB DBREF 5HVF A 1 401 UNP Q96IY4 CBPB2_HUMAN 23 423 DBREF 5HVF B 1 119 PDB 5HVF 5HVF 1 119 SEQADV 5HVF CYS A 305 UNP Q96IY4 SER 327 ENGINEERED MUTATION SEQADV 5HVF ILE A 329 UNP Q96IY4 THR 351 ENGINEERED MUTATION SEQADV 5HVF TYR A 333 UNP Q96IY4 HIS 355 ENGINEERED MUTATION SEQADV 5HVF GLN A 335 UNP Q96IY4 HIS 357 ENGINEERED MUTATION SEQRES 1 A 401 PHE GLN SER GLY GLN VAL LEU ALA ALA LEU PRO ARG THR SEQRES 2 A 401 SER ARG GLN VAL GLN VAL LEU GLN ASN LEU THR THR THR SEQRES 3 A 401 TYR GLU ILE VAL LEU TRP GLN PRO VAL THR ALA ASP LEU SEQRES 4 A 401 ILE VAL LYS LYS LYS GLN VAL HIS PHE PHE VAL ASN ALA SEQRES 5 A 401 SER ASP VAL ASP ASN VAL LYS ALA HIS LEU ASN VAL SER SEQRES 6 A 401 GLY ILE PRO CYS SER VAL LEU LEU ALA ASP VAL GLU ASP SEQRES 7 A 401 LEU ILE GLN GLN GLN ILE SER ASN ASP THR VAL SER PRO SEQRES 8 A 401 ARG ALA SER ALA SER TYR TYR GLU GLN TYR HIS SER LEU SEQRES 9 A 401 ASN GLU ILE TYR SER TRP ILE GLU PHE ILE THR GLU ARG SEQRES 10 A 401 HIS PRO ASP MET LEU THR LYS ILE HIS ILE GLY SER SER SEQRES 11 A 401 PHE GLU LYS TYR PRO LEU TYR VAL LEU LYS VAL SER GLY SEQRES 12 A 401 LYS GLU GLN ALA ALA LYS ASN ALA ILE TRP ILE ASP CYS SEQRES 13 A 401 GLY ILE HIS ALA ARG GLU TRP ILE SER PRO ALA PHE CYS SEQRES 14 A 401 LEU TRP PHE ILE GLY HIS ILE THR GLN PHE TYR GLY ILE SEQRES 15 A 401 ILE GLY GLN TYR THR ASN LEU LEU ARG LEU VAL ASP PHE SEQRES 16 A 401 TYR VAL MET PRO VAL VAL ASN VAL ASP GLY TYR ASP TYR SEQRES 17 A 401 SER TRP LYS LYS ASN ARG MET TRP ARG LYS ASN ARG SER SEQRES 18 A 401 PHE TYR ALA ASN ASN HIS CYS ILE GLY THR ASP LEU ASN SEQRES 19 A 401 ARG ASN PHE ALA SER LYS HIS TRP CYS GLU GLU GLY ALA SEQRES 20 A 401 SER SER SER SER CYS SER GLU THR TYR CYS GLY LEU TYR SEQRES 21 A 401 PRO GLU SER GLU PRO GLU VAL LYS ALA VAL ALA SER PHE SEQRES 22 A 401 LEU ARG ARG ASN ILE ASN GLN ILE LYS ALA TYR ILE SER SEQRES 23 A 401 MET HIS SER TYR SER GLN HIS ILE VAL PHE PRO TYR SER SEQRES 24 A 401 TYR THR ARG SER LYS CYS LYS ASP HIS GLU GLU LEU SER SEQRES 25 A 401 LEU VAL ALA SER GLU ALA VAL ARG ALA ILE GLU LYS ILE SEQRES 26 A 401 SER LYS ASN ILE ARG TYR THR TYR GLY GLN GLY SER GLU SEQRES 27 A 401 THR LEU TYR LEU ALA PRO GLY GLY GLY ASP ASP TRP ILE SEQRES 28 A 401 TYR ASP LEU GLY ILE LYS TYR SER PHE THR ILE GLU LEU SEQRES 29 A 401 ARG ASP THR GLY THR TYR GLY PHE LEU LEU PRO GLU ARG SEQRES 30 A 401 TYR ILE LYS PRO THR CYS ARG GLU ALA PHE ALA ALA VAL SEQRES 31 A 401 SER LYS ILE ALA TRP HIS VAL ILE ARG ASN VAL SEQRES 1 B 119 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 119 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 119 SER ILE PHE SER PRO ASN ALA MET GLY TRP TYR ARG GLN SEQRES 4 B 119 ALA PRO GLY LYS GLU ARG GLU LEU VAL ALA ALA ARG THR SEQRES 5 B 119 ASN VAL GLY SER THR TYR ALA ASP SER VAL LYS GLY ARG SEQRES 6 B 119 PHE THR VAL SER ARG ASP ASN ALA LYS ASN THR VAL TYR SEQRES 7 B 119 LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL SEQRES 8 B 119 TYR TYR CYS ASN ALA TRP GLY GLN ASP GLY TRP LEU GLY SEQRES 9 B 119 GLN TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 B 119 SER SER HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG A 505 14 HET NAG A 506 14 HET NAG A 507 14 HET ZN A 508 1 HET FLC A 509 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM FLC CITRATE ANION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN C6 H12 O6 FORMUL 7 ZN ZN 2+ FORMUL 8 FLC C6 H5 O7 3- FORMUL 9 HOH *33(H2 O) HELIX 1 AA1 THR A 13 TYR A 27 1 15 HELIX 2 AA2 THR A 36 ILE A 40 5 5 HELIX 3 AA3 ASP A 54 GLY A 66 1 13 HELIX 4 AA4 ASP A 75 ASN A 86 1 12 HELIX 5 AA5 ALA A 95 GLN A 100 5 6 HELIX 6 AA6 SER A 103 HIS A 118 1 16 HELIX 7 AA7 TRP A 163 ILE A 176 1 14 HELIX 8 AA8 ASN A 202 LYS A 212 1 11 HELIX 9 AA9 ASP A 232 ASN A 236 5 5 HELIX 10 AB1 GLU A 264 ASN A 277 1 14 HELIX 11 AB2 ASP A 307 SER A 326 1 20 HELIX 12 AB3 GLY A 336 LEU A 340 1 5 HELIX 13 AB4 GLY A 346 ASP A 353 1 8 HELIX 14 AB5 PRO A 375 ARG A 377 5 3 HELIX 15 AB6 TYR A 378 ARG A 399 1 22 HELIX 16 AB7 ASN B 72 LYS B 74 5 3 HELIX 17 AB8 LYS B 85 THR B 89 5 5 SHEET 1 AA1 4 ILE A 29 GLN A 33 0 SHEET 2 AA1 4 VAL A 46 ASN A 51 -1 O PHE A 49 N VAL A 30 SHEET 3 AA1 4 GLY A 4 ALA A 9 -1 N GLN A 5 O VAL A 50 SHEET 4 AA1 4 CYS A 69 LEU A 73 -1 O SER A 70 N ALA A 8 SHEET 1 AA2 8 THR A 123 SER A 129 0 SHEET 2 AA2 8 PRO A 135 LYS A 140 -1 O VAL A 138 N ILE A 125 SHEET 3 AA2 8 PHE A 195 MET A 198 -1 O VAL A 197 N LEU A 139 SHEET 4 AA2 8 ILE A 152 ASP A 155 1 N ILE A 154 O TYR A 196 SHEET 5 AA2 8 ALA A 283 SER A 289 1 O MET A 287 N ASP A 155 SHEET 6 AA2 8 TYR A 358 LEU A 364 1 O ILE A 362 N HIS A 288 SHEET 7 AA2 8 HIS A 293 PHE A 296 -1 N HIS A 293 O GLU A 363 SHEET 8 AA2 8 THR A 332 GLN A 335 1 O THR A 332 N ILE A 294 SHEET 1 AA3 4 GLN B 3 SER B 7 0 SHEET 2 AA3 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA3 4 THR B 76 MET B 81 -1 O MET B 81 N LEU B 18 SHEET 4 AA3 4 PHE B 66 ASP B 71 -1 N THR B 67 O GLN B 80 SHEET 1 AA4 6 GLY B 10 VAL B 12 0 SHEET 2 AA4 6 THR B 113 VAL B 117 1 O THR B 116 N GLY B 10 SHEET 3 AA4 6 ALA B 90 ASP B 100 -1 N TYR B 92 O THR B 113 SHEET 4 AA4 6 ALA B 33 GLN B 39 -1 N TYR B 37 O TYR B 93 SHEET 5 AA4 6 GLU B 46 ARG B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 AA4 6 SER B 56 TYR B 58 -1 O THR B 57 N ALA B 50 SHEET 1 AA5 4 GLY B 10 VAL B 12 0 SHEET 2 AA5 4 THR B 113 VAL B 117 1 O THR B 116 N GLY B 10 SHEET 3 AA5 4 ALA B 90 ASP B 100 -1 N TYR B 92 O THR B 113 SHEET 4 AA5 4 GLY B 104 TRP B 109 -1 O TYR B 108 N ALA B 96 SSBOND 1 CYS A 156 CYS A 169 1555 1555 2.03 SSBOND 2 CYS A 228 CYS A 252 1555 1555 2.03 SSBOND 3 CYS A 243 CYS A 257 1555 1555 2.04 SSBOND 4 CYS B 22 CYS B 94 1555 1555 2.01 LINK ND2 ASN A 22 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 51 C1 NAG A 505 1555 1555 1.43 LINK ND2 ASN A 63 C1 NAG A 506 1555 1555 1.43 LINK ND2 ASN A 86 C1 NAG A 507 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.42 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.41 LINK ND1 HIS A 159 ZN ZN A 508 1555 1555 2.09 LINK OE1 GLU A 162 ZN ZN A 508 1555 1555 2.32 LINK OE2 GLU A 162 ZN ZN A 508 1555 1555 2.36 LINK ZN ZN A 508 OA1 FLC A 509 1555 1555 2.15 CISPEP 1 GLN A 33 PRO A 34 0 -6.65 CISPEP 2 SER A 289 TYR A 290 0 -7.74 CISPEP 3 PRO A 297 TYR A 298 0 4.16 CISPEP 4 ARG A 365 ASP A 366 0 -2.19 CRYST1 51.290 69.978 165.337 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006048 0.00000