data_5KLF # _entry.id 5KLF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5KLF WWPDB D_1000222419 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5KLC unspecified PDB . 5KLE unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KLF _pdbx_database_status.recvd_initial_deposition_date 2016-06-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liberato, M.V.' 1 'Campos, B.M.' 2 'Zeri, A.C.M.' 3 'Squina, F.M.' 4 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 291 _citation.language ? _citation.page_first 23734 _citation.page_last 23743 _citation.title ;A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.M116.744383 _citation.pdbx_database_id_PubMed 27621314 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Campos, B.M.' 1 ? primary 'Liberato, M.V.' 2 ? primary 'Alvarez, T.M.' 3 ? primary 'Zanphorlin, L.M.' 4 ? primary 'Ematsu, G.C.' 5 ? primary 'Barud, H.' 6 ? primary 'Polikarpov, I.' 7 ? primary 'Ruller, R.' 8 ? primary 'Gilbert, H.J.' 9 ? primary 'Zeri, A.C.' 10 ? primary 'Squina, F.M.' 11 ? # _cell.length_a 88.410 _cell.length_b 88.410 _cell.length_c 88.410 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5KLF _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'I 21 3' _symmetry.entry_id 5KLF _symmetry.Int_Tables_number 199 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Carbohydrate binding module E1' 10011.957 1 ? ? ? ? 2 branched man 'beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose' 828.719 1 ? ? ? ? 3 non-polymer syn 'GADOLINIUM ATOM' 157.250 12 ? ? ? ? 4 water nat water 18.015 141 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name beta-cellopentaose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMSASCGSGNFNKTAAKGVEFSAVAGDCIKYNKSSGTLQIGSWTGVASSYNITSGPQGITNTGNGWTTVANAANGDLY IKIVSASRSFNVKFDNW ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMSASCGSGNFNKTAAKGVEFSAVAGDCIKYNKSSGTLQIGSWTGVASSYNITSGPQGITNTGNGWTTVANAANGDLY IKIVSASRSFNVKFDNW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 ALA n 1 7 SER n 1 8 CYS n 1 9 GLY n 1 10 SER n 1 11 GLY n 1 12 ASN n 1 13 PHE n 1 14 ASN n 1 15 LYS n 1 16 THR n 1 17 ALA n 1 18 ALA n 1 19 LYS n 1 20 GLY n 1 21 VAL n 1 22 GLU n 1 23 PHE n 1 24 SER n 1 25 ALA n 1 26 VAL n 1 27 ALA n 1 28 GLY n 1 29 ASP n 1 30 CYS n 1 31 ILE n 1 32 LYS n 1 33 TYR n 1 34 ASN n 1 35 LYS n 1 36 SER n 1 37 SER n 1 38 GLY n 1 39 THR n 1 40 LEU n 1 41 GLN n 1 42 ILE n 1 43 GLY n 1 44 SER n 1 45 TRP n 1 46 THR n 1 47 GLY n 1 48 VAL n 1 49 ALA n 1 50 SER n 1 51 SER n 1 52 TYR n 1 53 ASN n 1 54 ILE n 1 55 THR n 1 56 SER n 1 57 GLY n 1 58 PRO n 1 59 GLN n 1 60 GLY n 1 61 ILE n 1 62 THR n 1 63 ASN n 1 64 THR n 1 65 GLY n 1 66 ASN n 1 67 GLY n 1 68 TRP n 1 69 THR n 1 70 THR n 1 71 VAL n 1 72 ALA n 1 73 ASN n 1 74 ALA n 1 75 ALA n 1 76 ASN n 1 77 GLY n 1 78 ASP n 1 79 LEU n 1 80 TYR n 1 81 ILE n 1 82 LYS n 1 83 ILE n 1 84 VAL n 1 85 SER n 1 86 ALA n 1 87 SER n 1 88 ARG n 1 89 SER n 1 90 PHE n 1 91 ASN n 1 92 VAL n 1 93 LYS n 1 94 PHE n 1 95 ASP n 1 96 ASN n 1 97 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 97 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'uncultured bacterium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 77133 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A0R5P8X1_9BACT _struct_ref.pdbx_db_accession A0A0R5P8X1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SASCGSGNFNKTAAKGVEFSAVAGDCIKYNKSSGTLQIGSWTGVASSYNITSGPQGITNTGNGWTTVANAANGDLYIKIV SASRSFNVKFDNW ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5KLF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A0R5P8X1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 93 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5KLF GLY A 1 ? UNP A0A0R5P8X1 ? ? 'expression tag' 1 1 1 5KLF SER A 2 ? UNP A0A0R5P8X1 ? ? 'expression tag' 2 2 1 5KLF HIS A 3 ? UNP A0A0R5P8X1 ? ? 'expression tag' 3 3 1 5KLF MET A 4 ? UNP A0A0R5P8X1 ? ? 'expression tag' 4 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GD non-polymer . 'GADOLINIUM ATOM' ? Gd 157.250 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KLF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.03 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '4 M sodium formate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.48 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'LNLS BEAMLINE W01B-MX2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.48 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline W01B-MX2 _diffrn_source.pdbx_synchrotron_site LNLS # _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 31.260 _reflns.pdbx_number_measured_all 113653 _reflns.number_obs 10827 _reflns.pdbx_scaling_rejects 15 _reflns.pdbx_Rmerge_I_obs 0.130 _reflns.pdbx_netI_over_sigmaI 15.100 _reflns.pdbx_redundancy 10.500 _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rrim_I_all 0.137 _reflns.pdbx_Rpim_I_all 0.042 _reflns.pdbx_CC_half 0.997 _reflns.B_iso_Wilson_estimate 16.980 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5KLF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.800 1.840 ? 6595 ? 0 0.814 ? ? ? 10.300 ? 4.000 ? 641 ? ? ? ? 100.000 0.857 0.265 0.908 1 2 9.000 31.260 ? 927 ? 0 0.071 ? ? ? 9.300 ? 24.900 ? 100 ? ? ? ? 97.800 0.075 0.024 0.999 # _refine.entry_id 5KLF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.8010 _refine.ls_d_res_low 31.2580 _refine.pdbx_ls_sigma_F 1.380 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9900 _refine.ls_number_reflns_obs 10821 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1694 _refine.ls_R_factor_R_work 0.1683 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1911 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8600 _refine.ls_number_reflns_R_free 526 _refine.ls_number_reflns_R_work 10295 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 21.2063 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1900 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 92.470 _refine.B_iso_min 7.070 _refine.pdbx_overall_phase_error 18.1600 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8010 _refine_hist.d_res_low 31.2580 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 878 _refine_hist.pdbx_number_residues_total 93 _refine_hist.pdbx_B_iso_mean_ligand 67.83 _refine_hist.pdbx_B_iso_mean_solvent 30.52 _refine_hist.pdbx_number_atoms_protein 670 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 744 0.013 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1018 1.181 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 127 0.075 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 120 0.007 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 389 8.609 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 1.8009 1.9821 4 100.0000 2528 . 0.1921 0.2401 . 154 . 2682 . 'X-RAY DIFFRACTION' . 1.9821 2.2689 4 100.0000 2554 . 0.1650 0.1930 . 110 . 2664 . 'X-RAY DIFFRACTION' . 2.2689 2.8582 4 100.0000 2577 . 0.1765 0.2064 . 123 . 2700 . 'X-RAY DIFFRACTION' . 2.8582 31.2623 4 100.0000 2636 . 0.1594 0.1683 . 139 . 2775 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5KLF _struct.title ;Structure of CBM_E1, a novel carbohydrate-binding module found by sugar cane soil metagenome, complexed with cellopentaose and gadolinium ion ; _struct.pdbx_descriptor 'Aldo-keto reductase 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KLF _struct_keywords.text 'Carbohydrate-binding protein, metagenomics, cellulose, biofuels, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 30 SG ? ? A CYS 8 A CYS 30 1_555 ? ? ? ? ? ? ? 2.033 ? ? covale1 covale both ? B BGC . O4 ? ? ? 1_555 B BGC . C1 ? ? B BGC 1 B BGC 2 1_555 ? ? ? ? ? ? ? 1.397 sing ? covale2 covale both ? B BGC . O4 ? ? ? 1_555 B BGC . C1 ? ? B BGC 2 B BGC 3 1_555 ? ? ? ? ? ? ? 1.406 sing ? covale3 covale both ? B BGC . O4 ? ? ? 1_555 B BGC . C1 ? ? B BGC 3 B BGC 4 1_555 ? ? ? ? ? ? ? 1.401 sing ? covale4 covale both ? B BGC . O4 ? ? ? 1_555 B BGC . C1 ? ? B BGC 4 B BGC 5 1_555 ? ? ? ? ? ? ? 1.413 sing ? metalc1 metalc ? ? A GLU 22 OE2 ? ? ? 1_555 L GD . GD ? ? A GLU 22 A GD 111 1_555 ? ? ? ? ? ? ? 2.907 ? ? metalc2 metalc ? ? A SER 56 O ? ? ? 1_555 E GD . GD ? ? A SER 56 A GD 104 1_555 ? ? ? ? ? ? ? 2.655 ? ? metalc3 metalc ? ? A ASP 78 OD2 ? ? ? 1_555 F GD . GD ? ? A ASP 78 A GD 105 1_555 ? ? ? ? ? ? ? 2.680 ? ? metalc4 metalc ? ? A SER 87 O ? ? ? 1_555 D GD . GD ? ? A SER 87 A GD 103 1_555 ? ? ? ? ? ? ? 2.637 ? ? metalc5 metalc ? ? C GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 102 A HOH 255 1_555 ? ? ? ? ? ? ? 2.720 ? ? metalc6 metalc ? ? D GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 103 A HOH 225 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc7 metalc ? ? E GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 104 A HOH 297 1_555 ? ? ? ? ? ? ? 2.727 ? ? metalc8 metalc ? ? F GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 105 A HOH 206 1_555 ? ? ? ? ? ? ? 2.853 ? ? metalc9 metalc ? ? G GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 106 A HOH 206 1_555 ? ? ? ? ? ? ? 3.018 ? ? metalc10 metalc ? ? G GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 106 A HOH 228 1_555 ? ? ? ? ? ? ? 2.958 ? ? metalc11 metalc ? ? H GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 107 A HOH 260 1_555 ? ? ? ? ? ? ? 2.949 ? ? metalc12 metalc ? ? H GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 107 A HOH 260 16_565 ? ? ? ? ? ? ? 2.949 ? ? metalc13 metalc ? ? I GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 108 A HOH 239 9_555 ? ? ? ? ? ? ? 2.806 ? ? metalc14 metalc ? ? I GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 108 A HOH 325 1_555 ? ? ? ? ? ? ? 2.911 ? ? metalc15 metalc ? ? J GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 109 A HOH 218 1_555 ? ? ? ? ? ? ? 3.146 ? ? metalc16 metalc ? ? J GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 109 A HOH 294 1_555 ? ? ? ? ? ? ? 3.411 ? ? metalc17 metalc ? ? M GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 112 A HOH 281 1_555 ? ? ? ? ? ? ? 2.831 ? ? metalc18 metalc ? ? M GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 112 A HOH 291 15_656 ? ? ? ? ? ? ? 3.142 ? ? metalc19 metalc ? ? M GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 112 A HOH 306 1_555 ? ? ? ? ? ? ? 3.449 ? ? metalc20 metalc ? ? M GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 112 A HOH 329 1_555 ? ? ? ? ? ? ? 3.095 ? ? metalc21 metalc ? ? N GD . GD ? ? ? 1_555 O HOH . O ? ? A GD 113 A HOH 205 5_555 ? ? ? ? ? ? ? 3.331 ? ? metalc22 metalc ? ? N GD . GD ? ? ? 9_555 B BGC . O1 ? ? A GD 113 B BGC 1 1_555 ? ? ? ? ? ? ? 3.114 ? ? metalc23 metalc ? ? N GD . GD ? ? ? 22_656 B BGC . O4 ? ? A GD 113 B BGC 5 1_555 ? ? ? ? ? ? ? 3.382 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 15 ? THR A 16 ? LYS A 15 THR A 16 AA1 2 CYS A 30 ? LYS A 35 ? CYS A 30 LYS A 35 AA1 3 GLY A 77 ? ALA A 86 ? GLY A 77 ALA A 86 AA1 4 SER A 50 ? ILE A 54 ? SER A 50 ILE A 54 AA1 5 ILE A 61 ? ASN A 63 ? ILE A 61 ASN A 63 AA2 1 PHE A 23 ? ALA A 25 ? PHE A 23 ALA A 25 AA2 2 PHE A 90 ? TRP A 97 ? PHE A 90 TRP A 97 AA2 3 THR A 39 ? SER A 44 ? THR A 39 SER A 44 AA2 4 GLY A 67 ? VAL A 71 ? GLY A 67 VAL A 71 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 15 ? N LYS A 15 O LYS A 32 ? O LYS A 32 AA1 2 3 N LYS A 35 ? N LYS A 35 O GLY A 77 ? O GLY A 77 AA1 3 4 O LYS A 82 ? O LYS A 82 N ASN A 53 ? N ASN A 53 AA1 4 5 N SER A 50 ? N SER A 50 O ASN A 63 ? O ASN A 63 AA2 1 2 N ALA A 25 ? N ALA A 25 O PHE A 90 ? O PHE A 90 AA2 2 3 O LYS A 93 ? O LYS A 93 N GLY A 43 ? N GLY A 43 AA2 3 4 N ILE A 42 ? N ILE A 42 O THR A 69 ? O THR A 69 # _atom_sites.entry_id 5KLF _atom_sites.fract_transf_matrix[1][1] 0.011311 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011311 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011311 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C GD N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 MET 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 TRP 68 68 68 TRP TRP A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 TRP 97 97 97 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GD 1 102 1 GD GD A . D 3 GD 1 103 2 GD GD A . E 3 GD 1 104 3 GD GD A . F 3 GD 1 105 4 GD GD A . G 3 GD 1 106 5 GD GD A . H 3 GD 1 107 6 GD GD A . I 3 GD 1 108 7 GD GD A . J 3 GD 1 109 8 GD GD A . K 3 GD 1 110 9 GD GD A . L 3 GD 1 111 10 GD GD A . M 3 GD 1 112 11 GD GD A . N 3 GD 1 113 12 GD GD A . O 4 HOH 1 201 31 HOH HOH A . O 4 HOH 2 202 46 HOH HOH A . O 4 HOH 3 203 34 HOH HOH A . O 4 HOH 4 204 120 HOH HOH A . O 4 HOH 5 205 76 HOH HOH A . O 4 HOH 6 206 129 HOH HOH A . O 4 HOH 7 207 24 HOH HOH A . O 4 HOH 8 208 74 HOH HOH A . O 4 HOH 9 209 131 HOH HOH A . O 4 HOH 10 210 65 HOH HOH A . O 4 HOH 11 211 111 HOH HOH A . O 4 HOH 12 212 71 HOH HOH A . O 4 HOH 13 213 47 HOH HOH A . O 4 HOH 14 214 91 HOH HOH A . O 4 HOH 15 215 89 HOH HOH A . O 4 HOH 16 216 53 HOH HOH A . O 4 HOH 17 217 68 HOH HOH A . O 4 HOH 18 218 90 HOH HOH A . O 4 HOH 19 219 29 HOH HOH A . O 4 HOH 20 220 4 HOH HOH A . O 4 HOH 21 221 17 HOH HOH A . O 4 HOH 22 222 49 HOH HOH A . O 4 HOH 23 223 20 HOH HOH A . O 4 HOH 24 224 36 HOH HOH A . O 4 HOH 25 225 100 HOH HOH A . O 4 HOH 26 226 110 HOH HOH A . O 4 HOH 27 227 79 HOH HOH A . O 4 HOH 28 228 119 HOH HOH A . O 4 HOH 29 229 64 HOH HOH A . O 4 HOH 30 230 14 HOH HOH A . O 4 HOH 31 231 3 HOH HOH A . O 4 HOH 32 232 105 HOH HOH A . O 4 HOH 33 233 37 HOH HOH A . O 4 HOH 34 234 39 HOH HOH A . O 4 HOH 35 235 28 HOH HOH A . O 4 HOH 36 236 5 HOH HOH A . O 4 HOH 37 237 56 HOH HOH A . O 4 HOH 38 238 114 HOH HOH A . O 4 HOH 39 239 107 HOH HOH A . O 4 HOH 40 240 66 HOH HOH A . O 4 HOH 41 241 8 HOH HOH A . O 4 HOH 42 242 62 HOH HOH A . O 4 HOH 43 243 21 HOH HOH A . O 4 HOH 44 244 95 HOH HOH A . O 4 HOH 45 245 78 HOH HOH A . O 4 HOH 46 246 130 HOH HOH A . O 4 HOH 47 247 121 HOH HOH A . O 4 HOH 48 248 7 HOH HOH A . O 4 HOH 49 249 81 HOH HOH A . O 4 HOH 50 250 43 HOH HOH A . O 4 HOH 51 251 30 HOH HOH A . O 4 HOH 52 252 27 HOH HOH A . O 4 HOH 53 253 15 HOH HOH A . O 4 HOH 54 254 6 HOH HOH A . O 4 HOH 55 255 101 HOH HOH A . O 4 HOH 56 256 139 HOH HOH A . O 4 HOH 57 257 58 HOH HOH A . O 4 HOH 58 258 97 HOH HOH A . O 4 HOH 59 259 9 HOH HOH A . O 4 HOH 60 260 103 HOH HOH A . O 4 HOH 61 261 44 HOH HOH A . O 4 HOH 62 262 135 HOH HOH A . O 4 HOH 63 263 16 HOH HOH A . O 4 HOH 64 264 48 HOH HOH A . O 4 HOH 65 265 70 HOH HOH A . O 4 HOH 66 266 13 HOH HOH A . O 4 HOH 67 267 83 HOH HOH A . O 4 HOH 68 268 75 HOH HOH A . O 4 HOH 69 269 55 HOH HOH A . O 4 HOH 70 270 59 HOH HOH A . O 4 HOH 71 271 80 HOH HOH A . O 4 HOH 72 272 61 HOH HOH A . O 4 HOH 73 273 22 HOH HOH A . O 4 HOH 74 274 82 HOH HOH A . O 4 HOH 75 275 45 HOH HOH A . O 4 HOH 76 276 12 HOH HOH A . O 4 HOH 77 277 35 HOH HOH A . O 4 HOH 78 278 77 HOH HOH A . O 4 HOH 79 279 42 HOH HOH A . O 4 HOH 80 280 86 HOH HOH A . O 4 HOH 81 281 102 HOH HOH A . O 4 HOH 82 282 54 HOH HOH A . O 4 HOH 83 283 10 HOH HOH A . O 4 HOH 84 284 88 HOH HOH A . O 4 HOH 85 285 25 HOH HOH A . O 4 HOH 86 286 52 HOH HOH A . O 4 HOH 87 287 109 HOH HOH A . O 4 HOH 88 288 32 HOH HOH A . O 4 HOH 89 289 2 HOH HOH A . O 4 HOH 90 290 18 HOH HOH A . O 4 HOH 91 291 127 HOH HOH A . O 4 HOH 92 292 84 HOH HOH A . O 4 HOH 93 293 50 HOH HOH A . O 4 HOH 94 294 85 HOH HOH A . O 4 HOH 95 295 11 HOH HOH A . O 4 HOH 96 296 63 HOH HOH A . O 4 HOH 97 297 124 HOH HOH A . O 4 HOH 98 298 99 HOH HOH A . O 4 HOH 99 299 1 HOH HOH A . O 4 HOH 100 300 73 HOH HOH A . O 4 HOH 101 301 23 HOH HOH A . O 4 HOH 102 302 93 HOH HOH A . O 4 HOH 103 303 104 HOH HOH A . O 4 HOH 104 304 108 HOH HOH A . O 4 HOH 105 305 69 HOH HOH A . O 4 HOH 106 306 112 HOH HOH A . O 4 HOH 107 307 40 HOH HOH A . O 4 HOH 108 308 60 HOH HOH A . O 4 HOH 109 309 116 HOH HOH A . O 4 HOH 110 310 57 HOH HOH A . O 4 HOH 111 311 94 HOH HOH A . O 4 HOH 112 312 115 HOH HOH A . O 4 HOH 113 313 41 HOH HOH A . O 4 HOH 114 314 98 HOH HOH A . O 4 HOH 115 315 123 HOH HOH A . O 4 HOH 116 316 67 HOH HOH A . O 4 HOH 117 317 117 HOH HOH A . O 4 HOH 118 318 134 HOH HOH A . O 4 HOH 119 319 87 HOH HOH A . O 4 HOH 120 320 126 HOH HOH A . O 4 HOH 121 321 72 HOH HOH A . O 4 HOH 122 322 133 HOH HOH A . O 4 HOH 123 323 51 HOH HOH A . O 4 HOH 124 324 96 HOH HOH A . O 4 HOH 125 325 122 HOH HOH A . O 4 HOH 126 326 26 HOH HOH A . O 4 HOH 127 327 138 HOH HOH A . O 4 HOH 128 328 106 HOH HOH A . O 4 HOH 129 329 132 HOH HOH A . O 4 HOH 130 330 33 HOH HOH A . O 4 HOH 131 331 19 HOH HOH A . O 4 HOH 132 332 137 HOH HOH A . O 4 HOH 133 333 92 HOH HOH A . O 4 HOH 134 334 38 HOH HOH A . O 4 HOH 135 335 141 HOH HOH A . O 4 HOH 136 336 128 HOH HOH A . O 4 HOH 137 337 136 HOH HOH A . O 4 HOH 138 338 118 HOH HOH A . O 4 HOH 139 339 140 HOH HOH A . O 4 HOH 140 340 113 HOH HOH A . O 4 HOH 141 341 125 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900016 _pdbx_molecule_features.name beta-cellopentaose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Metabolism _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900016 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3780 ? 2 MORE -116 ? 2 'SSA (A^2)' 9840 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 16_565 x,-y+1,-z+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 88.4100000000 0.0000000000 0.0000000000 -1.0000000000 44.2050000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A GD 107 ? H GD . 2 1 A HOH 299 ? O HOH . 3 1 A HOH 340 ? O HOH . 4 1 A HOH 341 ? O HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 56 ? A SER 56 ? 1_555 GD ? E GD . ? A GD 104 ? 1_555 O ? O HOH . ? A HOH 297 ? 1_555 68.6 ? 2 OD2 ? A ASP 78 ? A ASP 78 ? 1_555 GD ? F GD . ? A GD 105 ? 1_555 O ? O HOH . ? A HOH 206 ? 1_555 65.5 ? 3 O ? A SER 87 ? A SER 87 ? 1_555 GD ? D GD . ? A GD 103 ? 1_555 O ? O HOH . ? A HOH 225 ? 1_555 85.6 ? 4 O ? O HOH . ? A HOH 206 ? 1_555 GD ? G GD . ? A GD 106 ? 1_555 O ? O HOH . ? A HOH 228 ? 1_555 77.4 ? 5 O ? O HOH . ? A HOH 260 ? 1_555 GD ? H GD . ? A GD 107 ? 1_555 O ? O HOH . ? A HOH 260 ? 16_565 88.9 ? 6 O ? O HOH . ? A HOH 239 ? 9_555 GD ? I GD . ? A GD 108 ? 1_555 O ? O HOH . ? A HOH 325 ? 1_555 71.7 ? 7 O ? O HOH . ? A HOH 218 ? 1_555 GD ? J GD . ? A GD 109 ? 1_555 O ? O HOH . ? A HOH 294 ? 1_555 94.1 ? 8 O ? O HOH . ? A HOH 281 ? 1_555 GD ? M GD . ? A GD 112 ? 1_555 O ? O HOH . ? A HOH 291 ? 15_656 92.0 ? 9 O ? O HOH . ? A HOH 281 ? 1_555 GD ? M GD . ? A GD 112 ? 1_555 O ? O HOH . ? A HOH 306 ? 1_555 46.2 ? 10 O ? O HOH . ? A HOH 291 ? 15_656 GD ? M GD . ? A GD 112 ? 1_555 O ? O HOH . ? A HOH 306 ? 1_555 47.8 ? 11 O ? O HOH . ? A HOH 281 ? 1_555 GD ? M GD . ? A GD 112 ? 1_555 O ? O HOH . ? A HOH 329 ? 1_555 64.8 ? 12 O ? O HOH . ? A HOH 291 ? 15_656 GD ? M GD . ? A GD 112 ? 1_555 O ? O HOH . ? A HOH 329 ? 1_555 126.3 ? 13 O ? O HOH . ? A HOH 306 ? 1_555 GD ? M GD . ? A GD 112 ? 1_555 O ? O HOH . ? A HOH 329 ? 1_555 88.7 ? 14 O ? O HOH . ? A HOH 205 ? 5_555 GD ? N GD . ? A GD 113 ? 1_555 O1 ? B BGC . ? B BGC 1 ? 1_555 135.4 ? 15 O ? O HOH . ? A HOH 205 ? 5_555 GD ? N GD . ? A GD 113 ? 1_555 O4 ? B BGC . ? B BGC 5 ? 1_555 146.8 ? 16 O1 ? B BGC . ? B BGC 1 ? 1_555 GD ? N GD . ? A GD 113 ? 1_555 O4 ? B BGC . ? B BGC 5 ? 1_555 46.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-21 2 'Structure model' 1 1 2016-11-16 3 'Structure model' 1 2 2018-01-17 4 'Structure model' 1 3 2019-04-17 5 'Structure model' 1 4 2020-01-01 6 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Author supporting evidence' 6 4 'Structure model' 'Data collection' 7 5 'Structure model' 'Author supporting evidence' 8 6 'Structure model' 'Atomic model' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Derived calculations' 11 6 'Structure model' 'Non-polymer description' 12 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' pdbx_audit_support 5 5 'Structure model' pdbx_audit_support 6 6 'Structure model' atom_site 7 6 'Structure model' chem_comp 8 6 'Structure model' entity 9 6 'Structure model' entity_name_com 10 6 'Structure model' pdbx_branch_scheme 11 6 'Structure model' pdbx_chem_comp_identifier 12 6 'Structure model' pdbx_entity_branch 13 6 'Structure model' pdbx_entity_branch_descriptor 14 6 'Structure model' pdbx_entity_branch_link 15 6 'Structure model' pdbx_entity_branch_list 16 6 'Structure model' pdbx_entity_nonpoly 17 6 'Structure model' pdbx_molecule_features 18 6 'Structure model' pdbx_nonpoly_scheme 19 6 'Structure model' pdbx_struct_conn_angle 20 6 'Structure model' struct_conn 21 6 'Structure model' struct_conn_type 22 6 'Structure model' struct_site 23 6 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 4 4 'Structure model' '_pdbx_audit_support.funding_organization' 5 5 'Structure model' '_pdbx_audit_support.funding_organization' 6 6 'Structure model' '_atom_site.B_iso_or_equiv' 7 6 'Structure model' '_atom_site.Cartn_x' 8 6 'Structure model' '_atom_site.Cartn_y' 9 6 'Structure model' '_atom_site.Cartn_z' 10 6 'Structure model' '_atom_site.auth_asym_id' 11 6 'Structure model' '_atom_site.auth_atom_id' 12 6 'Structure model' '_atom_site.auth_comp_id' 13 6 'Structure model' '_atom_site.auth_seq_id' 14 6 'Structure model' '_atom_site.label_atom_id' 15 6 'Structure model' '_atom_site.label_comp_id' 16 6 'Structure model' '_atom_site.type_symbol' 17 6 'Structure model' '_chem_comp.formula' 18 6 'Structure model' '_chem_comp.formula_weight' 19 6 'Structure model' '_chem_comp.id' 20 6 'Structure model' '_chem_comp.name' 21 6 'Structure model' '_chem_comp.type' 22 6 'Structure model' '_entity.formula_weight' 23 6 'Structure model' '_entity.pdbx_description' 24 6 'Structure model' '_entity.type' 25 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 26 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 27 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 28 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 29 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 30 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 31 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 32 6 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 33 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 34 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 35 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 36 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 37 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 38 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 39 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 40 6 'Structure model' '_pdbx_struct_conn_angle.value' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 52.7861 42.9379 31.0692 0.1189 0.1523 0.1347 -0.0134 0.0040 0.0310 0.6500 1.3646 1.3629 -0.0805 -0.0223 -0.7769 0.0354 -0.0655 0.0202 0.1181 -0.0172 -0.1482 0.0443 -0.1274 0.1055 'X-RAY DIFFRACTION' 2 ? refined 50.5994 38.5877 39.7162 0.1363 0.1488 0.1345 -0.0074 0.0033 0.0116 4.9750 2.7723 3.3339 1.8067 1.3025 0.6025 0.0275 -0.1629 -0.0533 -0.2180 -0.0309 0.0209 0.2511 -0.1510 -0.0007 'X-RAY DIFFRACTION' 3 ? refined 58.7091 40.6716 31.3123 0.1195 0.2141 0.1919 -0.0211 0.0092 0.0728 3.2138 1.1588 1.0435 -1.3450 0.7281 -0.4144 -0.0602 -0.1978 0.0693 0.1676 0.0671 -0.3934 -0.0340 -0.0703 0.3459 'X-RAY DIFFRACTION' 4 ? refined 56.1730 31.1129 33.4720 0.1138 0.1554 0.1256 0.0313 -0.0072 0.0195 0.7766 1.2449 1.7345 -0.1608 -0.1354 -0.6942 0.0486 -0.0912 0.0399 0.0232 0.0256 -0.1233 -0.1403 0.1706 0.2707 'X-RAY DIFFRACTION' 5 ? refined 58.8264 28.0205 34.3268 0.1485 0.2000 0.1451 0.0571 0.0155 0.0125 1.6878 2.1827 1.6524 0.2928 0.2327 -0.6625 0.0789 -0.1564 0.0978 0.0111 -0.1366 -0.1268 -0.3167 0.4688 0.3505 'X-RAY DIFFRACTION' 6 ? refined 52.6077 36.6527 29.7958 0.1320 0.1808 0.1321 0.0045 -0.0067 0.0239 2.2977 2.0610 3.1816 0.2947 -1.1788 -1.5078 -0.0172 0.1224 0.0062 0.3045 0.2857 -0.0361 -0.1165 0.0842 0.0017 'X-RAY DIFFRACTION' 7 ? refined 55.5725 33.6790 40.2009 0.1136 0.1877 0.0990 -0.0061 -0.0156 0.0102 4.4228 1.0527 1.5444 0.1273 -1.2351 -0.7972 0.0109 -0.0586 0.0179 0.2477 0.0376 -0.1379 0.1406 0.0013 0.1901 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 6 A 20 ;chain 'A' and (resid 6 through 20 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 21 A 29 ;chain 'A' and (resid 21 through 29 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 30 A 35 ;chain 'A' and (resid 30 through 35 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 36 A 60 ;chain 'A' and (resid 36 through 60 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 61 A 76 ;chain 'A' and (resid 61 through 76 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 77 A 86 ;chain 'A' and (resid 77 through 86 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 87 A 97 ;chain 'A' and (resid 87 through 97 ) ; ? ? ? ? ? # _phasing.method SAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.2 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 208 ? ? O A HOH 241 ? ? 2.08 2 1 O A HOH 297 ? ? O A HOH 317 ? ? 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 337 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 337 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 14_655 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 7 ? ? -47.19 154.79 2 1 ASN A 12 ? ? -151.31 30.27 3 1 ALA A 86 ? ? -178.33 136.25 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 340 ? 6.83 . 2 1 O ? A HOH 341 ? 8.02 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A MET 4 ? A MET 4 5 1 Y 1 A SER 5 ? A SER 5 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Sao Paulo Research Foundation (FAPESP)' Brazil 2014/04105-4 1 'Sao Paulo Research Foundation (FAPESP)' Brazil 2013/06336-0 2 'Sao Paulo Research Foundation (FAPESP)' Brazil 2008/58037-9 3 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 BGC 1 B BGC 1 B CE5 1 n B 2 BGC 2 B BGC 2 B CE5 1 n B 2 BGC 3 B BGC 3 B CE5 1 n B 2 BGC 4 B BGC 4 B CE5 1 n B 2 BGC 5 B BGC 5 B CE5 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpb1-4DGlcpb1-4DGlcpb1-4DGlcpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,5,4/[a2122h-1b_1-5]/1-1-1-1-1/a4-b1_b4-c1_c4-d1_d4-e1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Glcp]{[(4+1)][b-D-Glcp]{[(4+1)][b-D-Glcp]{[(4+1)][b-D-Glcp]{[(4+1)][b-D-Glcp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 BGC C1 O1 1 BGC O4 HO4 sing ? 2 2 3 BGC C1 O1 2 BGC O4 HO4 sing ? 3 2 4 BGC C1 O1 3 BGC O4 HO4 sing ? 4 2 5 BGC C1 O1 4 BGC O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 BGC 2 n 2 BGC 3 n 2 BGC 4 n 2 BGC 5 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'GADOLINIUM ATOM' GD 4 water HOH #