data_5KP9 # _entry.id 5KP9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5KP9 WWPDB D_1000222564 EMDB EMD-8278 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-8278 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KP9 _pdbx_database_status.recvd_initial_deposition_date 2016-07-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Votteler, J.' 1 ? 'Ogohara, C.' 2 ? 'Yi, S.' 3 ? 'Hsia, Y.' 4 ? 'Natterman, U.' 5 ? 'Belnap, D.M.' 6 ? 'King, N.P.' 7 ? 'Sundquist, W.I.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 540 _citation.language ? _citation.page_first 292 _citation.page_last 295 _citation.title 'Designed proteins induce the formation of nanocage-containing extracellular vesicles.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nature20607 _citation.pdbx_database_id_PubMed 27919066 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Votteler, J.' 1 ? primary 'Ogohara, C.' 2 ? primary 'Yi, S.' 3 ? primary 'Hsia, Y.' 4 ? primary 'Nattermann, U.' 5 ? primary 'Belnap, D.M.' 6 ? primary 'King, N.P.' 7 ? primary 'Sundquist, W.I.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description EPN-01* _entity.formula_weight 30304.920 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Enveloped protein nanoparticle' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGARASGSKSGSGSDSGSKMEELFKKHKIVAVLRANSVEEAKKKALAVFLGGVHLIEITFTVPDADTVIKELSFLKEMGA IIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKA MKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPVEVAEKAKAFVEKIRGCTEQKLISEEDLQSRPEPTAP PEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MGARASGSKSGSGSDSGSKMEELFKKHKIVAVLRANSVEEAKKKALAVFLGGVHLIEITFTVPDADTVIKELSFLKEMGA IIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKA MKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPVEVAEKAKAFVEKIRGCTEQKLISEEDLQSRPEPTAP PEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 ALA n 1 4 ARG n 1 5 ALA n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 LYS n 1 10 SER n 1 11 GLY n 1 12 SER n 1 13 GLY n 1 14 SER n 1 15 ASP n 1 16 SER n 1 17 GLY n 1 18 SER n 1 19 LYS n 1 20 MET n 1 21 GLU n 1 22 GLU n 1 23 LEU n 1 24 PHE n 1 25 LYS n 1 26 LYS n 1 27 HIS n 1 28 LYS n 1 29 ILE n 1 30 VAL n 1 31 ALA n 1 32 VAL n 1 33 LEU n 1 34 ARG n 1 35 ALA n 1 36 ASN n 1 37 SER n 1 38 VAL n 1 39 GLU n 1 40 GLU n 1 41 ALA n 1 42 LYS n 1 43 LYS n 1 44 LYS n 1 45 ALA n 1 46 LEU n 1 47 ALA n 1 48 VAL n 1 49 PHE n 1 50 LEU n 1 51 GLY n 1 52 GLY n 1 53 VAL n 1 54 HIS n 1 55 LEU n 1 56 ILE n 1 57 GLU n 1 58 ILE n 1 59 THR n 1 60 PHE n 1 61 THR n 1 62 VAL n 1 63 PRO n 1 64 ASP n 1 65 ALA n 1 66 ASP n 1 67 THR n 1 68 VAL n 1 69 ILE n 1 70 LYS n 1 71 GLU n 1 72 LEU n 1 73 SER n 1 74 PHE n 1 75 LEU n 1 76 LYS n 1 77 GLU n 1 78 MET n 1 79 GLY n 1 80 ALA n 1 81 ILE n 1 82 ILE n 1 83 GLY n 1 84 ALA n 1 85 GLY n 1 86 THR n 1 87 VAL n 1 88 THR n 1 89 SER n 1 90 VAL n 1 91 GLU n 1 92 GLN n 1 93 CYS n 1 94 ARG n 1 95 LYS n 1 96 ALA n 1 97 VAL n 1 98 GLU n 1 99 SER n 1 100 GLY n 1 101 ALA n 1 102 GLU n 1 103 PHE n 1 104 ILE n 1 105 VAL n 1 106 SER n 1 107 PRO n 1 108 HIS n 1 109 LEU n 1 110 ASP n 1 111 GLU n 1 112 GLU n 1 113 ILE n 1 114 SER n 1 115 GLN n 1 116 PHE n 1 117 CYS n 1 118 LYS n 1 119 GLU n 1 120 LYS n 1 121 GLY n 1 122 VAL n 1 123 PHE n 1 124 TYR n 1 125 MET n 1 126 PRO n 1 127 GLY n 1 128 VAL n 1 129 MET n 1 130 THR n 1 131 PRO n 1 132 THR n 1 133 GLU n 1 134 LEU n 1 135 VAL n 1 136 LYS n 1 137 ALA n 1 138 MET n 1 139 LYS n 1 140 LEU n 1 141 GLY n 1 142 HIS n 1 143 THR n 1 144 ILE n 1 145 LEU n 1 146 LYS n 1 147 LEU n 1 148 PHE n 1 149 PRO n 1 150 GLY n 1 151 GLU n 1 152 VAL n 1 153 VAL n 1 154 GLY n 1 155 PRO n 1 156 GLN n 1 157 PHE n 1 158 VAL n 1 159 LYS n 1 160 ALA n 1 161 MET n 1 162 LYS n 1 163 GLY n 1 164 PRO n 1 165 PHE n 1 166 PRO n 1 167 ASN n 1 168 VAL n 1 169 LYS n 1 170 PHE n 1 171 VAL n 1 172 PRO n 1 173 THR n 1 174 GLY n 1 175 GLY n 1 176 VAL n 1 177 ASN n 1 178 LEU n 1 179 ASP n 1 180 ASN n 1 181 VAL n 1 182 CYS n 1 183 GLU n 1 184 TRP n 1 185 PHE n 1 186 LYS n 1 187 ALA n 1 188 GLY n 1 189 VAL n 1 190 LEU n 1 191 ALA n 1 192 VAL n 1 193 GLY n 1 194 VAL n 1 195 GLY n 1 196 SER n 1 197 ALA n 1 198 LEU n 1 199 VAL n 1 200 LYS n 1 201 GLY n 1 202 THR n 1 203 PRO n 1 204 VAL n 1 205 GLU n 1 206 VAL n 1 207 ALA n 1 208 GLU n 1 209 LYS n 1 210 ALA n 1 211 LYS n 1 212 ALA n 1 213 PHE n 1 214 VAL n 1 215 GLU n 1 216 LYS n 1 217 ILE n 1 218 ARG n 1 219 GLY n 1 220 CYS n 1 221 THR n 1 222 GLU n 1 223 GLN n 1 224 LYS n 1 225 LEU n 1 226 ILE n 1 227 SER n 1 228 GLU n 1 229 GLU n 1 230 ASP n 1 231 LEU n 1 232 GLN n 1 233 SER n 1 234 ARG n 1 235 PRO n 1 236 GLU n 1 237 PRO n 1 238 THR n 1 239 ALA n 1 240 PRO n 1 241 PRO n 1 242 GLU n 1 243 GLU n 1 244 SER n 1 245 PHE n 1 246 ARG n 1 247 SER n 1 248 GLY n 1 249 VAL n 1 250 GLU n 1 251 THR n 1 252 THR n 1 253 THR n 1 254 PRO n 1 255 PRO n 1 256 GLN n 1 257 LYS n 1 258 GLN n 1 259 GLU n 1 260 PRO n 1 261 ILE n 1 262 ASP n 1 263 LYS n 1 264 GLU n 1 265 LEU n 1 266 TYR n 1 267 PRO n 1 268 LEU n 1 269 THR n 1 270 SER n 1 271 LEU n 1 272 ARG n 1 273 SER n 1 274 LEU n 1 275 PHE n 1 276 GLY n 1 277 ASN n 1 278 ASP n 1 279 PRO n 1 280 SER n 1 281 SER n 1 282 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 18 ? ? ? ? ? ? ? ? ? 'Thermotoga maritima' 2336 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 19 222 ? ? TM_0066 ? ? ? ? ? ? 'Thermotoga maritima' 2336 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? 1 3 sample 'Biological sequence' 223 282 HIV-1 ? gag ? 'isolate BH10' ? ? ? ? 'Human immunodeficiency virus type 1 group M subtype B (isolate BH10)' 11678 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5KP9 5KP9 ? 1 ? 1 2 UNP Q9WXS1_THEMA Q9WXS1 ? 1 ;KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVE SGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNL DNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGCTE ; 2 3 UNP GAG_HV1B1 P03347 ? 1 LQSRPEPTAPPEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ 461 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5KP9 B 1 ? 18 ? 5KP9 -18 ? -1 ? -18 -1 2 2 5KP9 B 19 ? 222 ? Q9WXS1 2 ? 205 ? 0 203 3 3 5KP9 B 231 ? 282 ? P03347 461 ? 512 ? 212 263 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 5KP9 LYS B 43 ? UNP Q9WXS1 GLU 26 conflict 24 1 2 5KP9 LEU B 50 ? UNP Q9WXS1 GLU 33 conflict 31 2 2 5KP9 MET B 78 ? UNP Q9WXS1 LYS 61 conflict 59 3 2 5KP9 VAL B 204 ? UNP Q9WXS1 ASP 187 conflict 185 4 2 5KP9 ALA B 207 ? UNP Q9WXS1 ARG 190 conflict 188 5 2 5KP9 GLN B 223 ? UNP Q9WXS1 ? ? linker 204 6 2 5KP9 LYS B 224 ? UNP Q9WXS1 ? ? linker 205 7 2 5KP9 LEU B 225 ? UNP Q9WXS1 ? ? linker 206 8 2 5KP9 ILE B 226 ? UNP Q9WXS1 ? ? linker 207 9 2 5KP9 SER B 227 ? UNP Q9WXS1 ? ? linker 208 10 2 5KP9 GLU B 228 ? UNP Q9WXS1 ? ? linker 209 11 2 5KP9 GLU B 229 ? UNP Q9WXS1 ? ? linker 210 12 2 5KP9 ASP B 230 ? UNP Q9WXS1 ? ? linker 211 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KP9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 5KP9 _struct.title 'Structure of Nanoparticle Released from Enveloped Protein Nanoparticle' _struct.pdbx_descriptor EPN-01* _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KP9 _struct_keywords.text ;protein design, icosahedral assemblies, cell transduction, enveloped viruses, virus assembly, enveloped protein, nanoparticle, STRUCTURAL PROTEIN ; _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 19 ? LYS A 28 ? LYS B 0 LYS B 9 1 ? 10 HELX_P HELX_P2 AA2 SER A 37 ? GLY A 51 ? SER B 18 GLY B 32 1 ? 15 HELX_P HELX_P3 AA3 ASP A 64 ? SER A 73 ? ASP B 45 SER B 54 1 ? 10 HELX_P HELX_P4 AA4 PHE A 74 ? GLY A 79 ? PHE B 55 GLY B 60 5 ? 6 HELX_P HELX_P5 AA5 SER A 89 ? SER A 99 ? SER B 70 SER B 80 1 ? 11 HELX_P HELX_P6 AA6 ASP A 110 ? GLY A 121 ? ASP B 91 GLY B 102 1 ? 12 HELX_P HELX_P7 AA7 THR A 130 ? LEU A 140 ? THR B 111 LEU B 121 1 ? 11 HELX_P HELX_P8 AA8 PRO A 149 ? GLY A 163 ? PRO B 130 GLY B 144 1 ? 15 HELX_P HELX_P9 AA9 ASN A 180 ? GLY A 188 ? ASN B 161 GLY B 169 1 ? 9 HELX_P HELX_P10 AB1 GLY A 195 ? LYS A 200 ? GLY B 176 LYS B 181 1 ? 6 HELX_P HELX_P11 AB2 THR A 202 ? GLY A 219 ? THR B 183 GLY B 200 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 182 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 220 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 163 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.055 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 148 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 129 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 149 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 130 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 81 ? GLY A 85 ? ILE B 62 GLY B 66 AA1 2 LEU A 55 ? THR A 59 ? LEU B 36 THR B 40 AA1 3 ILE A 29 ? LEU A 33 ? ILE B 10 LEU B 14 AA1 4 VAL A 192 ? VAL A 194 ? VAL B 173 VAL B 175 AA2 1 PHE A 103 ? VAL A 105 ? PHE B 84 VAL B 86 AA2 2 PHE A 123 ? MET A 125 ? PHE B 104 MET B 106 AA3 1 GLY A 127 ? VAL A 128 ? GLY B 108 VAL B 109 AA3 2 ILE A 144 ? LEU A 147 ? ILE B 125 LEU B 128 AA3 3 LYS A 169 ? PRO A 172 ? LYS B 150 PRO B 153 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 81 ? O ILE B 62 N ILE A 56 ? N ILE B 37 AA1 2 3 O GLU A 57 ? O GLU B 38 N ALA A 31 ? N ALA B 12 AA1 3 4 N VAL A 30 ? N VAL B 11 O VAL A 194 ? O VAL B 175 AA2 1 2 N ILE A 104 ? N ILE B 85 O MET A 125 ? O MET B 106 AA3 1 2 N VAL A 128 ? N VAL B 109 O LYS A 146 ? O LYS B 127 AA3 2 3 N LEU A 145 ? N LEU B 126 O LYS A 169 ? O LYS B 150 # _atom_sites.entry_id 5KP9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -18 ? ? ? B . n A 1 2 GLY 2 -17 ? ? ? B . n A 1 3 ALA 3 -16 ? ? ? B . n A 1 4 ARG 4 -15 ? ? ? B . n A 1 5 ALA 5 -14 ? ? ? B . n A 1 6 SER 6 -13 ? ? ? B . n A 1 7 GLY 7 -12 ? ? ? B . n A 1 8 SER 8 -11 ? ? ? B . n A 1 9 LYS 9 -10 ? ? ? B . n A 1 10 SER 10 -9 ? ? ? B . n A 1 11 GLY 11 -8 ? ? ? B . n A 1 12 SER 12 -7 ? ? ? B . n A 1 13 GLY 13 -6 ? ? ? B . n A 1 14 SER 14 -5 ? ? ? B . n A 1 15 ASP 15 -4 ? ? ? B . n A 1 16 SER 16 -3 ? ? ? B . n A 1 17 GLY 17 -2 ? ? ? B . n A 1 18 SER 18 -1 ? ? ? B . n A 1 19 LYS 19 0 0 LYS LYS B . n A 1 20 MET 20 1 1 MET MET B . n A 1 21 GLU 21 2 2 GLU GLU B . n A 1 22 GLU 22 3 3 GLU GLU B . n A 1 23 LEU 23 4 4 LEU LEU B . n A 1 24 PHE 24 5 5 PHE PHE B . n A 1 25 LYS 25 6 6 LYS LYS B . n A 1 26 LYS 26 7 7 LYS LYS B . n A 1 27 HIS 27 8 8 HIS HIS B . n A 1 28 LYS 28 9 9 LYS LYS B . n A 1 29 ILE 29 10 10 ILE ILE B . n A 1 30 VAL 30 11 11 VAL VAL B . n A 1 31 ALA 31 12 12 ALA ALA B . n A 1 32 VAL 32 13 13 VAL VAL B . n A 1 33 LEU 33 14 14 LEU LEU B . n A 1 34 ARG 34 15 15 ARG ARG B . n A 1 35 ALA 35 16 16 ALA ALA B . n A 1 36 ASN 36 17 17 ASN ASN B . n A 1 37 SER 37 18 18 SER SER B . n A 1 38 VAL 38 19 19 VAL VAL B . n A 1 39 GLU 39 20 20 GLU GLU B . n A 1 40 GLU 40 21 21 GLU GLU B . n A 1 41 ALA 41 22 22 ALA ALA B . n A 1 42 LYS 42 23 23 LYS LYS B . n A 1 43 LYS 43 24 24 LYS LYS B . n A 1 44 LYS 44 25 25 LYS LYS B . n A 1 45 ALA 45 26 26 ALA ALA B . n A 1 46 LEU 46 27 27 LEU LEU B . n A 1 47 ALA 47 28 28 ALA ALA B . n A 1 48 VAL 48 29 29 VAL VAL B . n A 1 49 PHE 49 30 30 PHE PHE B . n A 1 50 LEU 50 31 31 LEU LEU B . n A 1 51 GLY 51 32 32 GLY GLY B . n A 1 52 GLY 52 33 33 GLY GLY B . n A 1 53 VAL 53 34 34 VAL VAL B . n A 1 54 HIS 54 35 35 HIS HIS B . n A 1 55 LEU 55 36 36 LEU LEU B . n A 1 56 ILE 56 37 37 ILE ILE B . n A 1 57 GLU 57 38 38 GLU GLU B . n A 1 58 ILE 58 39 39 ILE ILE B . n A 1 59 THR 59 40 40 THR THR B . n A 1 60 PHE 60 41 41 PHE PHE B . n A 1 61 THR 61 42 42 THR THR B . n A 1 62 VAL 62 43 43 VAL VAL B . n A 1 63 PRO 63 44 44 PRO PRO B . n A 1 64 ASP 64 45 45 ASP ASP B . n A 1 65 ALA 65 46 46 ALA ALA B . n A 1 66 ASP 66 47 47 ASP ASP B . n A 1 67 THR 67 48 48 THR THR B . n A 1 68 VAL 68 49 49 VAL VAL B . n A 1 69 ILE 69 50 50 ILE ILE B . n A 1 70 LYS 70 51 51 LYS LYS B . n A 1 71 GLU 71 52 52 GLU GLU B . n A 1 72 LEU 72 53 53 LEU LEU B . n A 1 73 SER 73 54 54 SER SER B . n A 1 74 PHE 74 55 55 PHE PHE B . n A 1 75 LEU 75 56 56 LEU LEU B . n A 1 76 LYS 76 57 57 LYS LYS B . n A 1 77 GLU 77 58 58 GLU GLU B . n A 1 78 MET 78 59 59 MET MET B . n A 1 79 GLY 79 60 60 GLY GLY B . n A 1 80 ALA 80 61 61 ALA ALA B . n A 1 81 ILE 81 62 62 ILE ILE B . n A 1 82 ILE 82 63 63 ILE ILE B . n A 1 83 GLY 83 64 64 GLY GLY B . n A 1 84 ALA 84 65 65 ALA ALA B . n A 1 85 GLY 85 66 66 GLY GLY B . n A 1 86 THR 86 67 67 THR THR B . n A 1 87 VAL 87 68 68 VAL VAL B . n A 1 88 THR 88 69 69 THR THR B . n A 1 89 SER 89 70 70 SER SER B . n A 1 90 VAL 90 71 71 VAL VAL B . n A 1 91 GLU 91 72 72 GLU GLU B . n A 1 92 GLN 92 73 73 GLN GLN B . n A 1 93 CYS 93 74 74 CYS CYS B . n A 1 94 ARG 94 75 75 ARG ARG B . n A 1 95 LYS 95 76 76 LYS LYS B . n A 1 96 ALA 96 77 77 ALA ALA B . n A 1 97 VAL 97 78 78 VAL VAL B . n A 1 98 GLU 98 79 79 GLU GLU B . n A 1 99 SER 99 80 80 SER SER B . n A 1 100 GLY 100 81 81 GLY GLY B . n A 1 101 ALA 101 82 82 ALA ALA B . n A 1 102 GLU 102 83 83 GLU GLU B . n A 1 103 PHE 103 84 84 PHE PHE B . n A 1 104 ILE 104 85 85 ILE ILE B . n A 1 105 VAL 105 86 86 VAL VAL B . n A 1 106 SER 106 87 87 SER SER B . n A 1 107 PRO 107 88 88 PRO PRO B . n A 1 108 HIS 108 89 89 HIS HIS B . n A 1 109 LEU 109 90 90 LEU LEU B . n A 1 110 ASP 110 91 91 ASP ASP B . n A 1 111 GLU 111 92 92 GLU GLU B . n A 1 112 GLU 112 93 93 GLU GLU B . n A 1 113 ILE 113 94 94 ILE ILE B . n A 1 114 SER 114 95 95 SER SER B . n A 1 115 GLN 115 96 96 GLN GLN B . n A 1 116 PHE 116 97 97 PHE PHE B . n A 1 117 CYS 117 98 98 CYS CYS B . n A 1 118 LYS 118 99 99 LYS LYS B . n A 1 119 GLU 119 100 100 GLU GLU B . n A 1 120 LYS 120 101 101 LYS LYS B . n A 1 121 GLY 121 102 102 GLY GLY B . n A 1 122 VAL 122 103 103 VAL VAL B . n A 1 123 PHE 123 104 104 PHE PHE B . n A 1 124 TYR 124 105 105 TYR TYR B . n A 1 125 MET 125 106 106 MET MET B . n A 1 126 PRO 126 107 107 PRO PRO B . n A 1 127 GLY 127 108 108 GLY GLY B . n A 1 128 VAL 128 109 109 VAL VAL B . n A 1 129 MET 129 110 110 MET MET B . n A 1 130 THR 130 111 111 THR THR B . n A 1 131 PRO 131 112 112 PRO PRO B . n A 1 132 THR 132 113 113 THR THR B . n A 1 133 GLU 133 114 114 GLU GLU B . n A 1 134 LEU 134 115 115 LEU LEU B . n A 1 135 VAL 135 116 116 VAL VAL B . n A 1 136 LYS 136 117 117 LYS LYS B . n A 1 137 ALA 137 118 118 ALA ALA B . n A 1 138 MET 138 119 119 MET MET B . n A 1 139 LYS 139 120 120 LYS LYS B . n A 1 140 LEU 140 121 121 LEU LEU B . n A 1 141 GLY 141 122 122 GLY GLY B . n A 1 142 HIS 142 123 123 HIS HIS B . n A 1 143 THR 143 124 124 THR THR B . n A 1 144 ILE 144 125 125 ILE ILE B . n A 1 145 LEU 145 126 126 LEU LEU B . n A 1 146 LYS 146 127 127 LYS LYS B . n A 1 147 LEU 147 128 128 LEU LEU B . n A 1 148 PHE 148 129 129 PHE PHE B . n A 1 149 PRO 149 130 130 PRO PRO B . n A 1 150 GLY 150 131 131 GLY GLY B . n A 1 151 GLU 151 132 132 GLU GLU B . n A 1 152 VAL 152 133 133 VAL VAL B . n A 1 153 VAL 153 134 134 VAL VAL B . n A 1 154 GLY 154 135 135 GLY GLY B . n A 1 155 PRO 155 136 136 PRO PRO B . n A 1 156 GLN 156 137 137 GLN GLN B . n A 1 157 PHE 157 138 138 PHE PHE B . n A 1 158 VAL 158 139 139 VAL VAL B . n A 1 159 LYS 159 140 140 LYS LYS B . n A 1 160 ALA 160 141 141 ALA ALA B . n A 1 161 MET 161 142 142 MET MET B . n A 1 162 LYS 162 143 143 LYS LYS B . n A 1 163 GLY 163 144 144 GLY GLY B . n A 1 164 PRO 164 145 145 PRO PRO B . n A 1 165 PHE 165 146 146 PHE PHE B . n A 1 166 PRO 166 147 147 PRO PRO B . n A 1 167 ASN 167 148 148 ASN ASN B . n A 1 168 VAL 168 149 149 VAL VAL B . n A 1 169 LYS 169 150 150 LYS LYS B . n A 1 170 PHE 170 151 151 PHE PHE B . n A 1 171 VAL 171 152 152 VAL VAL B . n A 1 172 PRO 172 153 153 PRO PRO B . n A 1 173 THR 173 154 154 THR THR B . n A 1 174 GLY 174 155 155 GLY GLY B . n A 1 175 GLY 175 156 156 GLY GLY B . n A 1 176 VAL 176 157 157 VAL VAL B . n A 1 177 ASN 177 158 158 ASN ASN B . n A 1 178 LEU 178 159 159 LEU LEU B . n A 1 179 ASP 179 160 160 ASP ASP B . n A 1 180 ASN 180 161 161 ASN ASN B . n A 1 181 VAL 181 162 162 VAL VAL B . n A 1 182 CYS 182 163 163 CYS CYS B . n A 1 183 GLU 183 164 164 GLU GLU B . n A 1 184 TRP 184 165 165 TRP TRP B . n A 1 185 PHE 185 166 166 PHE PHE B . n A 1 186 LYS 186 167 167 LYS LYS B . n A 1 187 ALA 187 168 168 ALA ALA B . n A 1 188 GLY 188 169 169 GLY GLY B . n A 1 189 VAL 189 170 170 VAL VAL B . n A 1 190 LEU 190 171 171 LEU LEU B . n A 1 191 ALA 191 172 172 ALA ALA B . n A 1 192 VAL 192 173 173 VAL VAL B . n A 1 193 GLY 193 174 174 GLY GLY B . n A 1 194 VAL 194 175 175 VAL VAL B . n A 1 195 GLY 195 176 176 GLY GLY B . n A 1 196 SER 196 177 177 SER SER B . n A 1 197 ALA 197 178 178 ALA ALA B . n A 1 198 LEU 198 179 179 LEU LEU B . n A 1 199 VAL 199 180 180 VAL VAL B . n A 1 200 LYS 200 181 181 LYS LYS B . n A 1 201 GLY 201 182 182 GLY GLY B . n A 1 202 THR 202 183 183 THR THR B . n A 1 203 PRO 203 184 184 PRO PRO B . n A 1 204 VAL 204 185 185 VAL VAL B . n A 1 205 GLU 205 186 186 GLU GLU B . n A 1 206 VAL 206 187 187 VAL VAL B . n A 1 207 ALA 207 188 188 ALA ALA B . n A 1 208 GLU 208 189 189 GLU GLU B . n A 1 209 LYS 209 190 190 LYS LYS B . n A 1 210 ALA 210 191 191 ALA ALA B . n A 1 211 LYS 211 192 192 LYS LYS B . n A 1 212 ALA 212 193 193 ALA ALA B . n A 1 213 PHE 213 194 194 PHE PHE B . n A 1 214 VAL 214 195 195 VAL VAL B . n A 1 215 GLU 215 196 196 GLU GLU B . n A 1 216 LYS 216 197 197 LYS LYS B . n A 1 217 ILE 217 198 198 ILE ILE B . n A 1 218 ARG 218 199 199 ARG ARG B . n A 1 219 GLY 219 200 200 GLY GLY B . n A 1 220 CYS 220 201 201 CYS CYS B . n A 1 221 THR 221 202 ? ? ? B . n A 1 222 GLU 222 203 ? ? ? B . n A 1 223 GLN 223 204 ? ? ? B . n A 1 224 LYS 224 205 ? ? ? B . n A 1 225 LEU 225 206 ? ? ? B . n A 1 226 ILE 226 207 ? ? ? B . n A 1 227 SER 227 208 ? ? ? B . n A 1 228 GLU 228 209 ? ? ? B . n A 1 229 GLU 229 210 ? ? ? B . n A 1 230 ASP 230 211 ? ? ? B . n A 1 231 LEU 231 212 ? ? ? B . n A 1 232 GLN 232 213 ? ? ? B . n A 1 233 SER 233 214 ? ? ? B . n A 1 234 ARG 234 215 ? ? ? B . n A 1 235 PRO 235 216 ? ? ? B . n A 1 236 GLU 236 217 ? ? ? B . n A 1 237 PRO 237 218 ? ? ? B . n A 1 238 THR 238 219 ? ? ? B . n A 1 239 ALA 239 220 ? ? ? B . n A 1 240 PRO 240 221 ? ? ? B . n A 1 241 PRO 241 222 ? ? ? B . n A 1 242 GLU 242 223 ? ? ? B . n A 1 243 GLU 243 224 ? ? ? B . n A 1 244 SER 244 225 ? ? ? B . n A 1 245 PHE 245 226 ? ? ? B . n A 1 246 ARG 246 227 ? ? ? B . n A 1 247 SER 247 228 ? ? ? B . n A 1 248 GLY 248 229 ? ? ? B . n A 1 249 VAL 249 230 ? ? ? B . n A 1 250 GLU 250 231 ? ? ? B . n A 1 251 THR 251 232 ? ? ? B . n A 1 252 THR 252 233 ? ? ? B . n A 1 253 THR 253 234 ? ? ? B . n A 1 254 PRO 254 235 ? ? ? B . n A 1 255 PRO 255 236 ? ? ? B . n A 1 256 GLN 256 237 ? ? ? B . n A 1 257 LYS 257 238 ? ? ? B . n A 1 258 GLN 258 239 ? ? ? B . n A 1 259 GLU 259 240 ? ? ? B . n A 1 260 PRO 260 241 ? ? ? B . n A 1 261 ILE 261 242 ? ? ? B . n A 1 262 ASP 262 243 ? ? ? B . n A 1 263 LYS 263 244 ? ? ? B . n A 1 264 GLU 264 245 ? ? ? B . n A 1 265 LEU 265 246 ? ? ? B . n A 1 266 TYR 266 247 ? ? ? B . n A 1 267 PRO 267 248 ? ? ? B . n A 1 268 LEU 268 249 ? ? ? B . n A 1 269 THR 269 250 ? ? ? B . n A 1 270 SER 270 251 ? ? ? B . n A 1 271 LEU 271 252 ? ? ? B . n A 1 272 ARG 272 253 ? ? ? B . n A 1 273 SER 273 254 ? ? ? B . n A 1 274 LEU 274 255 ? ? ? B . n A 1 275 PHE 275 256 ? ? ? B . n A 1 276 GLY 276 257 ? ? ? B . n A 1 277 ASN 277 258 ? ? ? B . n A 1 278 ASP 278 259 ? ? ? B . n A 1 279 PRO 279 260 ? ? ? B . n A 1 280 SER 280 261 ? ? ? B . n A 1 281 SER 281 262 ? ? ? B . n A 1 282 GLN 282 263 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A 2 1 A 3 '(1-5)' A 4 '(1,2,6,10,23,24)' A 5 P A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 1 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901699 -0.80901700 -0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901700 0.00000 3 'point symmetry operation' ? ? -0.80901700 -0.50000000 -0.30901700 0.00000 0.50000000 -0.30901699 -0.80901700 0.00000 0.30901700 -0.80901699 0.50000000 0.00000 4 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901700 0.00000 -0.50000000 -0.30901700 -0.80901700 0.00000 -0.30901699 -0.80901700 0.50000000 0.00000 5 'point symmetry operation' ? ? 0.30901700 0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 -0.30901700 0.00000 -0.50000000 -0.30901700 0.80901699 0.00000 6 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 0.00000 -0.30901700 -0.80901699 -0.50000001 0.00000 0.80901700 -0.49999999 0.30901699 0.00000 7 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 8 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 -0.80901700 -0.50000000 0.30901699 0.00000 9 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 0.00000 0.80901700 0.50000000 0.30901699 0.00000 -0.50000000 0.30901700 0.80901699 0.00000 10 'point symmetry operation' ? ? -0.30901700 -0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 -0.30901700 0.00000 0.50000000 0.30901700 0.80901699 0.00000 11 'point symmetry operation' ? ? 0.30901699 0.80901700 -0.49999999 0.00000 0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000001 -0.30901700 -0.80901699 0.00000 12 'point symmetry operation' ? ? 0.50000000 0.30901700 -0.80901699 0.00000 -0.30901700 -0.80901700 -0.50000000 0.00000 -0.80901700 0.50000000 -0.30901699 0.00000 13 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 14 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901700 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 0.80901700 0.50000000 -0.30901699 0.00000 15 'point symmetry operation' ? ? -0.30901700 0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 0.30901700 0.00000 0.50000000 -0.30901700 -0.80901699 0.00000 16 'point symmetry operation' ? ? -0.80901699 -0.50000001 -0.30901700 0.00000 -0.49999999 0.30901699 0.80901700 0.00000 -0.30901699 0.80901699 -0.50000000 0.00000 17 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 0.00000 0.50000000 0.30901699 0.80901700 0.00000 0.30901700 0.80901699 -0.50000000 0.00000 18 'point symmetry operation' ? ? 0.30901699 0.80901700 0.50000000 0.00000 0.80901699 -0.50000000 0.30901700 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 19 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 20 'point symmetry operation' ? ? 0.30901700 -0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 0.30901700 0.00000 -0.50000000 0.30901700 -0.80901699 0.00000 21 'point symmetry operation' ? ? -0.30901700 -0.80901699 -0.50000001 0.00000 0.80901700 -0.49999999 0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 22 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 23 'point symmetry operation' ? ? -0.30901699 0.80901700 0.50000000 0.00000 -0.80901700 -0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 24 'point symmetry operation' ? ? 0.80901700 0.50000000 0.30901699 0.00000 -0.50000000 0.30901700 0.80901699 0.00000 0.30901699 -0.80901699 0.50000000 0.00000 25 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901700 0.00000 0.50000000 0.30901700 0.80901699 0.00000 -0.30901700 -0.80901699 0.50000000 0.00000 26 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 27 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901700 0.00000 0.30901699 -0.80901700 -0.50000000 0.00000 28 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901700 0.00000 0.30901700 -0.80901699 0.50000000 0.00000 -0.80901700 -0.50000000 -0.30901700 0.00000 29 'point symmetry operation' ? ? -0.50000000 -0.30901700 -0.80901700 0.00000 -0.30901699 -0.80901700 0.50000000 0.00000 -0.80901699 0.50000000 0.30901700 0.00000 30 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901700 0.00000 -0.50000000 -0.30901700 0.80901699 0.00000 0.30901700 0.80901699 0.50000000 0.00000 31 'point symmetry operation' ? ? -0.49999999 0.30901699 0.80901700 0.00000 -0.30901699 0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000001 -0.30901700 0.00000 32 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901700 0.00000 0.30901700 0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 0.30901699 0.00000 33 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901700 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 0.80901700 0.50000000 0.00000 34 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 35 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901700 0.00000 -0.50000000 0.30901700 -0.80901699 0.00000 0.30901700 -0.80901699 -0.50000000 0.00000 36 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000001 -0.30901700 -0.80901699 0.00000 0.30901699 0.80901700 -0.49999999 0.00000 37 'point symmetry operation' ? ? -0.30901700 -0.80901700 -0.50000000 0.00000 -0.80901700 0.50000000 -0.30901699 0.00000 0.50000000 0.30901700 -0.80901699 0.00000 38 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 39 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 0.80901700 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901700 0.00000 40 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901700 0.00000 0.50000000 -0.30901700 -0.80901699 0.00000 -0.30901700 0.80901699 -0.50000000 0.00000 41 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000001 -0.30901700 0.00000 -0.49999999 0.30901699 0.80901700 0.00000 42 'point symmetry operation' ? ? 0.30901700 0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 0.30901699 0.00000 0.50000000 0.30901699 0.80901700 0.00000 43 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 0.80901700 0.50000000 0.00000 0.80901699 -0.50000000 0.30901700 0.00000 44 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 45 'point symmetry operation' ? ? -0.50000000 0.30901700 -0.80901699 0.00000 0.30901700 -0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 0.30901700 0.00000 46 'point symmetry operation' ? ? -0.50000001 -0.30901700 -0.80901699 0.00000 0.30901699 0.80901700 -0.49999999 0.00000 0.80901699 -0.50000000 -0.30901699 0.00000 47 'point symmetry operation' ? ? -0.80901700 0.50000000 -0.30901699 0.00000 0.50000000 0.30901700 -0.80901699 0.00000 -0.30901700 -0.80901700 -0.50000000 0.00000 48 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 49 'point symmetry operation' ? ? 0.80901700 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901700 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 50 'point symmetry operation' ? ? 0.50000000 -0.30901700 -0.80901699 0.00000 -0.30901700 0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 0.30901700 0.00000 51 'point symmetry operation' ? ? 0.80901700 -0.49999999 0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 -0.30901700 -0.80901699 -0.50000001 0.00000 52 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 53 'point symmetry operation' ? ? -0.80901700 -0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 54 'point symmetry operation' ? ? -0.50000000 0.30901700 0.80901699 0.00000 0.30901699 -0.80901699 0.50000000 0.00000 0.80901700 0.50000000 0.30901699 0.00000 55 'point symmetry operation' ? ? 0.50000000 0.30901700 0.80901699 0.00000 -0.30901700 -0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 -0.30901700 0.00000 56 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 57 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901700 0.00000 0.30901699 -0.80901700 -0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 58 'point symmetry operation' ? ? 0.30901700 -0.80901699 0.50000000 0.00000 -0.80901700 -0.50000000 -0.30901700 0.00000 0.50000000 -0.30901699 -0.80901700 0.00000 59 'point symmetry operation' ? ? -0.30901699 -0.80901700 0.50000000 0.00000 -0.80901699 0.50000000 0.30901700 0.00000 -0.50000000 -0.30901700 -0.80901700 0.00000 60 'point symmetry operation' ? ? -0.50000000 -0.30901700 0.80901699 0.00000 0.30901700 0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 -0.30901700 0.00000 # _pdbx_point_symmetry.entry_id 5KP9 _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-07 2 'Structure model' 1 1 2017-01-11 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 1 3 2017-09-27 5 'Structure model' 1 4 2018-07-18 6 'Structure model' 1 5 2019-11-27 7 'Structure model' 1 6 2019-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Experimental preparation' 6 6 'Structure model' 'Author supporting evidence' 7 7 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_audit_support 3 5 'Structure model' em_sample_support 4 5 'Structure model' em_software 5 6 'Structure model' pdbx_audit_support 6 7 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_audit_support.funding_organization' 3 5 'Structure model' '_em_sample_support.grid_type' 4 5 'Structure model' '_em_software.name' 5 6 'Structure model' '_pdbx_audit_support.funding_organization' 6 6 'Structure model' '_pdbx_audit_support.grant_number' 7 7 'Structure model' '_pdbx_audit_support.funding_organization' # _em_3d_fitting.entry_id 5KP9 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 5KP9 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 10 _em_3d_reconstruction.num_particles 8573 _em_3d_reconstruction.resolution 5.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details 'Phosphate-buffered saline' _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name EPN-01* _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5KP9 _em_image_scans.id 1 _em_image_scans.dimension_height 7676 _em_image_scans.dimension_width 7420 _em_image_scans.frames_per_image 60 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 2.5 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? # _em_imaging.id 1 _em_imaging.entry_id 5KP9 _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max 3300 _em_imaging.calibrated_defocus_min 700 _em_imaging.calibrated_magnification 41911 _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.0 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.specimen_holder_type ? _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.citation_id ? _em_imaging.detector_distance ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details '11 second blot, 0 mm offset' _em_vitrification.humidity 80 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.entry_id 5KP9 _em_vitrification.temp ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? # _em_experiment.entry_id 5KP9 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 5KP9 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 0 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE1 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 3 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG1 _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 VAL _pdbx_validate_rmsd_angle.auth_seq_id_1 109 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 VAL _pdbx_validate_rmsd_angle.auth_seq_id_2 109 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 VAL _pdbx_validate_rmsd_angle.auth_seq_id_3 109 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.05 _pdbx_validate_rmsd_angle.angle_target_value 110.90 _pdbx_validate_rmsd_angle.angle_deviation 13.15 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 9 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 70.84 _pdbx_validate_torsion.psi -7.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 0 ? CB ? A LYS 19 CB 2 1 Y 1 B LYS 0 ? CG ? A LYS 19 CG 3 1 Y 1 B LYS 0 ? CD ? A LYS 19 CD 4 1 Y 1 B LYS 0 ? CE ? A LYS 19 CE 5 1 Y 1 B LYS 0 ? NZ ? A LYS 19 NZ 6 1 Y 1 B MET 1 ? CB ? A MET 20 CB 7 1 Y 1 B MET 1 ? CG ? A MET 20 CG 8 1 Y 1 B MET 1 ? SD ? A MET 20 SD 9 1 Y 1 B MET 1 ? CE ? A MET 20 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET -18 ? A MET 1 2 1 Y 1 B GLY -17 ? A GLY 2 3 1 Y 1 B ALA -16 ? A ALA 3 4 1 Y 1 B ARG -15 ? A ARG 4 5 1 Y 1 B ALA -14 ? A ALA 5 6 1 Y 1 B SER -13 ? A SER 6 7 1 Y 1 B GLY -12 ? A GLY 7 8 1 Y 1 B SER -11 ? A SER 8 9 1 Y 1 B LYS -10 ? A LYS 9 10 1 Y 1 B SER -9 ? A SER 10 11 1 Y 1 B GLY -8 ? A GLY 11 12 1 Y 1 B SER -7 ? A SER 12 13 1 Y 1 B GLY -6 ? A GLY 13 14 1 Y 1 B SER -5 ? A SER 14 15 1 Y 1 B ASP -4 ? A ASP 15 16 1 Y 1 B SER -3 ? A SER 16 17 1 Y 1 B GLY -2 ? A GLY 17 18 1 Y 1 B SER -1 ? A SER 18 19 1 Y 1 B THR 202 ? A THR 221 20 1 Y 1 B GLU 203 ? A GLU 222 21 1 Y 1 B GLN 204 ? A GLN 223 22 1 Y 1 B LYS 205 ? A LYS 224 23 1 Y 1 B LEU 206 ? A LEU 225 24 1 Y 1 B ILE 207 ? A ILE 226 25 1 Y 1 B SER 208 ? A SER 227 26 1 Y 1 B GLU 209 ? A GLU 228 27 1 Y 1 B GLU 210 ? A GLU 229 28 1 Y 1 B ASP 211 ? A ASP 230 29 1 Y 1 B LEU 212 ? A LEU 231 30 1 Y 1 B GLN 213 ? A GLN 232 31 1 Y 1 B SER 214 ? A SER 233 32 1 Y 1 B ARG 215 ? A ARG 234 33 1 Y 1 B PRO 216 ? A PRO 235 34 1 Y 1 B GLU 217 ? A GLU 236 35 1 Y 1 B PRO 218 ? A PRO 237 36 1 Y 1 B THR 219 ? A THR 238 37 1 Y 1 B ALA 220 ? A ALA 239 38 1 Y 1 B PRO 221 ? A PRO 240 39 1 Y 1 B PRO 222 ? A PRO 241 40 1 Y 1 B GLU 223 ? A GLU 242 41 1 Y 1 B GLU 224 ? A GLU 243 42 1 Y 1 B SER 225 ? A SER 244 43 1 Y 1 B PHE 226 ? A PHE 245 44 1 Y 1 B ARG 227 ? A ARG 246 45 1 Y 1 B SER 228 ? A SER 247 46 1 Y 1 B GLY 229 ? A GLY 248 47 1 Y 1 B VAL 230 ? A VAL 249 48 1 Y 1 B GLU 231 ? A GLU 250 49 1 Y 1 B THR 232 ? A THR 251 50 1 Y 1 B THR 233 ? A THR 252 51 1 Y 1 B THR 234 ? A THR 253 52 1 Y 1 B PRO 235 ? A PRO 254 53 1 Y 1 B PRO 236 ? A PRO 255 54 1 Y 1 B GLN 237 ? A GLN 256 55 1 Y 1 B LYS 238 ? A LYS 257 56 1 Y 1 B GLN 239 ? A GLN 258 57 1 Y 1 B GLU 240 ? A GLU 259 58 1 Y 1 B PRO 241 ? A PRO 260 59 1 Y 1 B ILE 242 ? A ILE 261 60 1 Y 1 B ASP 243 ? A ASP 262 61 1 Y 1 B LYS 244 ? A LYS 263 62 1 Y 1 B GLU 245 ? A GLU 264 63 1 Y 1 B LEU 246 ? A LEU 265 64 1 Y 1 B TYR 247 ? A TYR 266 65 1 Y 1 B PRO 248 ? A PRO 267 66 1 Y 1 B LEU 249 ? A LEU 268 67 1 Y 1 B THR 250 ? A THR 269 68 1 Y 1 B SER 251 ? A SER 270 69 1 Y 1 B LEU 252 ? A LEU 271 70 1 Y 1 B ARG 253 ? A ARG 272 71 1 Y 1 B SER 254 ? A SER 273 72 1 Y 1 B LEU 255 ? A LEU 274 73 1 Y 1 B PHE 256 ? A PHE 275 74 1 Y 1 B GLY 257 ? A GLY 276 75 1 Y 1 B ASN 258 ? A ASN 277 76 1 Y 1 B ASP 259 ? A ASP 278 77 1 Y 1 B PRO 260 ? A PRO 279 78 1 Y 1 B SER 261 ? A SER 280 79 1 Y 1 B SER 262 ? A SER 281 80 1 Y 1 B GLN 263 ? A GLN 282 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2336 _em_entity_assembly_naturalsource.organ . _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Thermotoga maritima' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell HEK293T _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid EPN-01* _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 2 _em_image_recording.average_exposure_time ? _em_image_recording.details 'Electron dose at specimen was not recorded.' _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 9177 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? Scipion ? 1 ? ? 2 'PARTICLE SELECTION' ? Xmipp ? 1 ? ? 3 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 4 MASKING ? ? ? ? ? ? 5 'CTF CORRECTION' ? CTFFIND ? 1 ? ? 6 'CTF CORRECTION' ? Scipion ? 1 ? ? 7 'LAYERLINE INDEXING' ? ? ? ? ? ? 8 'DIFFRACTION INDEXING' ? ? ? ? ? ? 9 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 10 OTHER ? ? ? ? ? ? 11 'INITIAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 12 'INITIAL EULER ASSIGNMENT' ? Scipion ? 1 ? ? 13 'FINAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 14 'FINAL EULER ASSIGNMENT' ? Scipion ? 1 ? ? 15 CLASSIFICATION ? RELION ? 1 ? ? 16 CLASSIFICATION ? Scipion ? 1 ? ? 17 RECONSTRUCTION ? RELION ? 1 ? ? 18 RECONSTRUCTION ? Scipion ? 1 ? ? 19 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.2 _em_specimen.details 'EPN nanoparticles released from vesicles by detergent treatment (0.75% CHAPS)' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Research Foundation (DFG)' Germany 'Fellowship VO 1836/1-1' 1 'Bill & Melinda Gates Foundation' 'United States' OPP1118840 2 'Defense Advanced Research Projects Agency' 'United States' W911NF-14-1-0162 3 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI51174 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM082545 5 #