data_5KPY # _entry.id 5KPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KPY pdb_00005kpy 10.2210/pdb5kpy/pdb WWPDB D_1000222599 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-01-11 2 'Structure model' 1 1 2017-02-01 3 'Structure model' 1 2 2017-03-01 4 'Structure model' 1 3 2017-09-27 5 'Structure model' 1 4 2019-11-27 6 'Structure model' 1 5 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 5 'Structure model' 'Author supporting evidence' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 5 'Structure model' pdbx_audit_support 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' pdbx_struct_conn_angle 7 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 5 'Structure model' '_pdbx_audit_support.funding_organization' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.value' 8 6 'Structure model' '_struct_conn.pdbx_dist_value' 9 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KPY _pdbx_database_status.recvd_initial_deposition_date 2016-07-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Batey, R.T.' 1 'Porter, E.' 2 'Merck, M.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 295 _citation.page_last 301 _citation.title 'Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nchembio.2278 _citation.pdbx_database_id_PubMed 28092358 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Porter, E.B.' 1 ? primary 'Polaski, J.T.' 2 ? primary 'Morck, M.M.' 3 ? primary 'Batey, R.T.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '5-hydroxytryptophan RNA aptamer' 22833.549 1 ? ? ? ? 2 non-polymer syn 5-hydroxy-L-tryptophan 220.225 1 ? ? ? ? 3 non-polymer syn 'IRIDIUM HEXAMMINE ION' 294.400 12 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 5 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACACUGAUGAUCGCGUGGAUAUGGCACGCAUUGAAUUGUUGGACACCGUAAAUGUCCUAACACGUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACACUGAUGAUCGCGUGGAUAUGGCACGCAUUGAAUUGUUGGACACCGUAAAUGUCCUAACACGUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 5-hydroxy-L-tryptophan 4PQ 3 'IRIDIUM HEXAMMINE ION' IRI 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 C n 1 7 U n 1 8 G n 1 9 A n 1 10 U n 1 11 G n 1 12 A n 1 13 U n 1 14 C n 1 15 G n 1 16 C n 1 17 G n 1 18 U n 1 19 G n 1 20 G n 1 21 A n 1 22 U n 1 23 A n 1 24 U n 1 25 G n 1 26 G n 1 27 C n 1 28 A n 1 29 C n 1 30 G n 1 31 C n 1 32 A n 1 33 U n 1 34 U n 1 35 G n 1 36 A n 1 37 A n 1 38 U n 1 39 U n 1 40 G n 1 41 U n 1 42 U n 1 43 G n 1 44 G n 1 45 A n 1 46 C n 1 47 A n 1 48 C n 1 49 C n 1 50 G n 1 51 U n 1 52 A n 1 53 A n 1 54 A n 1 55 U n 1 56 G n 1 57 U n 1 58 C n 1 59 C n 1 60 U n 1 61 A n 1 62 A n 1 63 C n 1 64 A n 1 65 C n 1 66 G n 1 67 U n 1 68 G n 1 69 U n 1 70 C n 1 71 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 71 _pdbx_entity_src_syn.organism_scientific unidentified _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32644 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4PQ 'L-peptide linking' n 5-hydroxy-L-tryptophan Oxitriptan 'C11 H12 N2 O3' 220.225 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IRI non-polymer . 'IRIDIUM HEXAMMINE ION' ? 'H18 Ir N6 3' 294.400 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 13 13 G G A . n A 1 2 G 2 14 14 G G A . n A 1 3 A 3 15 15 A A A . n A 1 4 C 4 16 16 C C A . n A 1 5 A 5 17 17 A A A . n A 1 6 C 6 18 18 C C A . n A 1 7 U 7 19 19 U U A . n A 1 8 G 8 20 20 G G A . n A 1 9 A 9 21 21 A A A . n A 1 10 U 10 22 22 U U A . n A 1 11 G 11 23 23 G G A . n A 1 12 A 12 24 24 A A A . n A 1 13 U 13 25 25 U U A . n A 1 14 C 14 26 26 C C A . n A 1 15 G 15 27 27 G G A . n A 1 16 C 16 28 28 C C A . n A 1 17 G 17 29 29 G G A . n A 1 18 U 18 30 30 U U A . n A 1 19 G 19 31 31 G G A . n A 1 20 G 20 32 32 G G A . n A 1 21 A 21 33 33 A A A . n A 1 22 U 22 34 34 U U A . n A 1 23 A 23 35 35 A A A . n A 1 24 U 24 36 36 U U A . n A 1 25 G 25 37 37 G G A . n A 1 26 G 26 38 38 G G A . n A 1 27 C 27 39 39 C C A . n A 1 28 A 28 40 40 A A A . n A 1 29 C 29 41 41 C C A . n A 1 30 G 30 42 42 G G A . n A 1 31 C 31 43 43 C C A . n A 1 32 A 32 44 44 A A A . n A 1 33 U 33 45 45 U U A . n A 1 34 U 34 46 46 U U A . n A 1 35 G 35 47 47 G G A . n A 1 36 A 36 48 48 A A A . n A 1 37 A 37 49 49 A A A . n A 1 38 U 38 50 50 U U A . n A 1 39 U 39 51 51 U U A . n A 1 40 G 40 52 52 G G A . n A 1 41 U 41 53 53 U U A . n A 1 42 U 42 54 54 U U A . n A 1 43 G 43 55 55 G G A . n A 1 44 G 44 56 56 G G A . n A 1 45 A 45 57 57 A A A . n A 1 46 C 46 58 58 C C A . n A 1 47 A 47 59 59 A A A . n A 1 48 C 48 60 60 C C A . n A 1 49 C 49 61 61 C C A . n A 1 50 G 50 62 62 G G A . n A 1 51 U 51 63 63 U U A . n A 1 52 A 52 64 64 A A A . n A 1 53 A 53 65 65 A A A . n A 1 54 A 54 66 66 A A A . n A 1 55 U 55 67 67 U U A . n A 1 56 G 56 68 68 G G A . n A 1 57 U 57 69 69 U U A . n A 1 58 C 58 70 70 C C A . n A 1 59 C 59 71 71 C C A . n A 1 60 U 60 72 72 U U A . n A 1 61 A 61 73 73 A A A . n A 1 62 A 62 74 74 A A A . n A 1 63 C 63 75 75 C C A . n A 1 64 A 64 76 76 A A A . n A 1 65 C 65 77 77 C C A . n A 1 66 G 66 78 78 G G A . n A 1 67 U 67 79 79 U U A . n A 1 68 G 68 80 80 G G A . n A 1 69 U 69 81 81 U U A . n A 1 70 C 70 82 82 C C A . n A 1 71 C 71 83 83 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4PQ 1 101 101 4PQ HRP A . C 3 IRI 1 102 201 IRI IRI A . D 3 IRI 1 103 202 IRI IRI A . E 3 IRI 1 104 203 IRI IRI A . F 3 IRI 1 105 204 IRI IRI A . G 3 IRI 1 106 205 IRI IRI A . H 3 IRI 1 107 206 IRI IRI A . I 3 IRI 1 108 207 IRI IRI A . J 3 IRI 1 109 208 IRI IRI A . K 3 IRI 1 110 209 IRI IRI A . L 3 IRI 1 111 210 IRI IRI A . M 3 IRI 1 112 211 IRI IRI A . N 3 IRI 1 113 212 IRI IRI A . O 4 MG 1 114 301 MG MG A . P 4 MG 1 115 302 MG MG A . Q 4 MG 1 116 303 MG MG A . R 4 MG 1 117 304 MG MG A . S 4 MG 1 118 305 MG MG A . T 4 MG 1 119 306 MG MG A . U 5 HOH 1 201 511 HOH HOH A . U 5 HOH 2 202 503 HOH HOH A . U 5 HOH 3 203 499 HOH HOH A . U 5 HOH 4 204 485 HOH HOH A . U 5 HOH 5 205 451 HOH HOH A . U 5 HOH 6 206 453 HOH HOH A . U 5 HOH 7 207 462 HOH HOH A . U 5 HOH 8 208 466 HOH HOH A . U 5 HOH 9 209 427 HOH HOH A . U 5 HOH 10 210 412 HOH HOH A . U 5 HOH 11 211 497 HOH HOH A . U 5 HOH 12 212 491 HOH HOH A . U 5 HOH 13 213 457 HOH HOH A . U 5 HOH 14 214 438 HOH HOH A . U 5 HOH 15 215 426 HOH HOH A . U 5 HOH 16 216 443 HOH HOH A . U 5 HOH 17 217 430 HOH HOH A . U 5 HOH 18 218 405 HOH HOH A . U 5 HOH 19 219 452 HOH HOH A . U 5 HOH 20 220 420 HOH HOH A . U 5 HOH 21 221 437 HOH HOH A . U 5 HOH 22 222 422 HOH HOH A . U 5 HOH 23 223 413 HOH HOH A . U 5 HOH 24 224 444 HOH HOH A . U 5 HOH 25 225 460 HOH HOH A . U 5 HOH 26 226 505 HOH HOH A . U 5 HOH 27 227 479 HOH HOH A . U 5 HOH 28 228 456 HOH HOH A . U 5 HOH 29 229 458 HOH HOH A . U 5 HOH 30 230 425 HOH HOH A . U 5 HOH 31 231 404 HOH HOH A . U 5 HOH 32 232 418 HOH HOH A . U 5 HOH 33 233 416 HOH HOH A . U 5 HOH 34 234 411 HOH HOH A . U 5 HOH 35 235 459 HOH HOH A . U 5 HOH 36 236 510 HOH HOH A . U 5 HOH 37 237 469 HOH HOH A . U 5 HOH 38 238 401 HOH HOH A . U 5 HOH 39 239 464 HOH HOH A . U 5 HOH 40 240 447 HOH HOH A . U 5 HOH 41 241 415 HOH HOH A . U 5 HOH 42 242 490 HOH HOH A . U 5 HOH 43 243 433 HOH HOH A . U 5 HOH 44 244 429 HOH HOH A . U 5 HOH 45 245 421 HOH HOH A . U 5 HOH 46 246 439 HOH HOH A . U 5 HOH 47 247 417 HOH HOH A . U 5 HOH 48 248 442 HOH HOH A . U 5 HOH 49 249 408 HOH HOH A . U 5 HOH 50 250 448 HOH HOH A . U 5 HOH 51 251 463 HOH HOH A . U 5 HOH 52 252 424 HOH HOH A . U 5 HOH 53 253 402 HOH HOH A . U 5 HOH 54 254 441 HOH HOH A . U 5 HOH 55 255 454 HOH HOH A . U 5 HOH 56 256 407 HOH HOH A . U 5 HOH 57 257 410 HOH HOH A . U 5 HOH 58 258 440 HOH HOH A . U 5 HOH 59 259 431 HOH HOH A . U 5 HOH 60 260 423 HOH HOH A . U 5 HOH 61 261 434 HOH HOH A . U 5 HOH 62 262 455 HOH HOH A . U 5 HOH 63 263 468 HOH HOH A . U 5 HOH 64 264 406 HOH HOH A . U 5 HOH 65 265 449 HOH HOH A . U 5 HOH 66 266 435 HOH HOH A . U 5 HOH 67 267 419 HOH HOH A . U 5 HOH 68 268 486 HOH HOH A . U 5 HOH 69 269 403 HOH HOH A . U 5 HOH 70 270 445 HOH HOH A . U 5 HOH 71 271 428 HOH HOH A . U 5 HOH 72 272 409 HOH HOH A . U 5 HOH 73 273 465 HOH HOH A . U 5 HOH 74 274 488 HOH HOH A . U 5 HOH 75 275 450 HOH HOH A . U 5 HOH 76 276 489 HOH HOH A . U 5 HOH 77 277 432 HOH HOH A . U 5 HOH 78 278 477 HOH HOH A . U 5 HOH 79 279 481 HOH HOH A . U 5 HOH 80 280 496 HOH HOH A . U 5 HOH 81 281 461 HOH HOH A . U 5 HOH 82 282 508 HOH HOH A . U 5 HOH 83 283 483 HOH HOH A . U 5 HOH 84 284 480 HOH HOH A . U 5 HOH 85 285 414 HOH HOH A . U 5 HOH 86 286 487 HOH HOH A . U 5 HOH 87 287 482 HOH HOH A . U 5 HOH 88 288 502 HOH HOH A . U 5 HOH 89 289 504 HOH HOH A . U 5 HOH 90 290 478 HOH HOH A . U 5 HOH 91 291 472 HOH HOH A . U 5 HOH 92 292 507 HOH HOH A . U 5 HOH 93 293 498 HOH HOH A . U 5 HOH 94 294 446 HOH HOH A . U 5 HOH 95 295 436 HOH HOH A . U 5 HOH 96 296 495 HOH HOH A . U 5 HOH 97 297 475 HOH HOH A . U 5 HOH 98 298 471 HOH HOH A . U 5 HOH 99 299 494 HOH HOH A . U 5 HOH 100 300 476 HOH HOH A . U 5 HOH 101 301 474 HOH HOH A . U 5 HOH 102 302 509 HOH HOH A . U 5 HOH 103 303 493 HOH HOH A . U 5 HOH 104 304 467 HOH HOH A . U 5 HOH 105 305 484 HOH HOH A . U 5 HOH 106 306 470 HOH HOH A . U 5 HOH 107 307 500 HOH HOH A . U 5 HOH 108 308 473 HOH HOH A . U 5 HOH 109 309 512 HOH HOH A . U 5 HOH 110 310 492 HOH HOH A . U 5 HOH 111 311 501 HOH HOH A . U 5 HOH 112 312 506 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.1_1168 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrystalClear ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? d*TREK ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 106.32 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5KPY _cell.details ? _cell.formula_units_Z ? _cell.length_a 127.553 _cell.length_a_esd ? _cell.length_b 26.594 _cell.length_b_esd ? _cell.length_c 63.367 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KPY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '8-14% MPD, 40 mM sodium cacodylate, pH 5.5, 4 mM MgCl2, 12 mM NaCl, 80 mM KCl, 4-9 mM cobalt hexamine' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-09-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5KPY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 19.95 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13725 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.34 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 73.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.191 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.65 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5KPY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 18.333 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13725 _refine.ls_number_reflns_R_free 1372 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.38 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2206 _refine.ls_R_factor_R_free 0.2581 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2165 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.51 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.97 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.22 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1513 _refine_hist.pdbx_number_atoms_ligand 106 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 1731 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 18.333 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1780 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.308 ? 2837 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 15.167 ? 851 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.047 ? 356 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 73 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0000 2.0714 . . 104 940 75.00 . . . 0.2603 . 0.2013 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0714 2.1542 . . 138 1236 98.00 . . . 0.2256 . 0.2108 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1542 2.2521 . . 134 1209 96.00 . . . 0.2309 . 0.2168 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2521 2.3706 . . 141 1268 99.00 . . . 0.3290 . 0.2147 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3706 2.5188 . . 137 1228 98.00 . . . 0.2861 . 0.2220 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5188 2.7127 . . 140 1259 99.00 . . . 0.2710 . 0.2338 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7127 2.9846 . . 143 1291 99.00 . . . 0.3195 . 0.2308 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9846 3.4141 . . 141 1270 100.00 . . . 0.2638 . 0.2121 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4141 4.2923 . . 145 1300 100.00 . . . 0.2149 . 0.1901 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.2923 18.3340 . . 149 1352 100.00 . . . 0.2521 . 0.2305 . . . . . . . . . . # _struct.entry_id 5KPY _struct.title 'Structure of a 5-hydroxytryptophan aptamer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KPY _struct_keywords.text 'RNA, aptamer, riboswitch, 5-hydroxytryptophan' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5KPY _struct_ref.pdbx_db_accession 5KPY _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5KPY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 71 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5KPY _struct_ref_seq.db_align_beg 13 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 83 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 83 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 36 "O2'" ? ? ? 1_555 S MG . MG ? ? A A 48 A MG 118 1_555 ? ? ? ? ? ? ? 2.667 ? ? metalc2 metalc ? ? A C 48 O2 ? ? ? 1_555 R MG . MG ? ? A C 60 A MG 117 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc3 metalc ? ? B 4PQ . O ? ? ? 1_555 T MG . MG ? ? A 4PQ 101 A MG 119 1_555 ? ? ? ? ? ? ? 2.564 ? ? metalc4 metalc ? ? Q MG . MG ? ? ? 1_555 U HOH . O ? ? A MG 116 A HOH 247 1_555 ? ? ? ? ? ? ? 2.857 ? ? metalc5 metalc ? ? Q MG . MG ? ? ? 1_555 U HOH . O ? ? A MG 116 A HOH 249 1_555 ? ? ? ? ? ? ? 2.735 ? ? metalc6 metalc ? ? Q MG . MG ? ? ? 1_555 U HOH . O ? ? A MG 116 A HOH 252 1_555 ? ? ? ? ? ? ? 2.476 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 71 N3 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 71 O2 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 71 N4 ? ? A G 13 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 14 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 69 N3 ? ? A A 15 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 69 O4 ? ? A A 15 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 16 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 16 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 16 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 67 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 67 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O2 ? ? ? 1_555 A C 65 N4 ? ? A U 19 A C 77 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog18 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 64 N7 ? ? A G 20 A A 76 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog19 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 39 O2 ? ? A A 21 A U 51 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A A 9 N7 ? ? ? 1_555 A U 39 N3 ? ? A A 21 A U 51 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 22 A A 74 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog22 hydrog ? ? A U 10 O2 ? ? ? 1_555 A A 62 N6 ? ? A U 22 A A 74 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 40 N3 ? ? A G 23 A G 52 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog24 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 40 N2 ? ? A G 23 A G 52 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog25 hydrog ? ? A A 12 N6 ? ? ? 1_555 A A 61 N1 ? ? A A 24 A A 73 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog26 hydrog ? ? A A 12 N7 ? ? ? 1_555 A A 61 N6 ? ? A A 24 A A 73 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog27 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 32 N1 ? ? A U 25 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 32 N6 ? ? A U 25 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 28 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 54 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog44 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 25 N2 ? ? A U 34 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog45 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 53 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 53 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 52 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog48 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 52 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog49 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 49 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 49 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 49 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 54 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog56 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 54 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog57 hydrog ? ? A U 33 N3 ? ? ? 1_555 A A 37 N7 ? ? A U 45 A A 49 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog58 hydrog ? ? A U 33 O2 ? ? ? 1_555 A A 37 N6 ? ? A U 45 A A 49 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog59 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 47 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 47 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 47 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 58 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 58 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 58 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 57 N3 ? ? A A 57 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 57 O4 ? ? A A 57 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 47 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 47 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 49 O2 ? ? ? 1_555 A A 53 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? U HOH . ? A HOH 247 ? 1_555 MG ? Q MG . ? A MG 116 ? 1_555 O ? U HOH . ? A HOH 249 ? 1_555 60.1 ? 2 O ? U HOH . ? A HOH 247 ? 1_555 MG ? Q MG . ? A MG 116 ? 1_555 O ? U HOH . ? A HOH 252 ? 1_555 58.3 ? 3 O ? U HOH . ? A HOH 249 ? 1_555 MG ? Q MG . ? A MG 116 ? 1_555 O ? U HOH . ? A HOH 252 ? 1_555 90.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 4PQ 101 ? 10 'binding site for residue 4PQ A 101' AC2 Software A IRI 102 ? 3 'binding site for residue IRI A 102' AC3 Software A IRI 103 ? 7 'binding site for residue IRI A 103' AC4 Software A IRI 104 ? 4 'binding site for residue IRI A 104' AC5 Software A IRI 105 ? 9 'binding site for residue IRI A 105' AC6 Software A IRI 106 ? 10 'binding site for residue IRI A 106' AC7 Software A IRI 107 ? 5 'binding site for residue IRI A 107' AC8 Software A IRI 108 ? 9 'binding site for residue IRI A 108' AC9 Software A IRI 109 ? 5 'binding site for residue IRI A 109' AD1 Software A IRI 110 ? 8 'binding site for residue IRI A 110' AD2 Software A IRI 111 ? 2 'binding site for residue IRI A 111' AD3 Software A IRI 112 ? 3 'binding site for residue IRI A 112' AD4 Software A IRI 113 ? 8 'binding site for residue IRI A 113' AD5 Software A MG 115 ? 2 'binding site for residue MG A 115' AD6 Software A MG 116 ? 3 'binding site for residue MG A 116' AD7 Software A MG 117 ? 5 'binding site for residue MG A 117' AD8 Software A MG 118 ? 3 'binding site for residue MG A 118' AD9 Software A MG 119 ? 3 'binding site for residue MG A 119' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 U A 13 ? U A 25 . ? 1_555 ? 2 AC1 10 U A 34 ? U A 46 . ? 1_555 ? 3 AC1 10 A A 36 ? A A 48 . ? 1_555 ? 4 AC1 10 A A 37 ? A A 49 . ? 1_555 ? 5 AC1 10 U A 39 ? U A 51 . ? 1_555 ? 6 AC1 10 IRI G . ? IRI A 106 . ? 1_555 ? 7 AC1 10 MG S . ? MG A 118 . ? 1_555 ? 8 AC1 10 MG T . ? MG A 119 . ? 1_555 ? 9 AC1 10 HOH U . ? HOH A 255 . ? 1_555 ? 10 AC1 10 HOH U . ? HOH A 261 . ? 1_555 ? 11 AC2 3 A A 45 ? A A 57 . ? 4_547 ? 12 AC2 3 HOH U . ? HOH A 213 . ? 1_555 ? 13 AC2 3 HOH U . ? HOH A 242 . ? 1_555 ? 14 AC3 7 G A 1 ? G A 13 . ? 1_555 ? 15 AC3 7 G A 2 ? G A 14 . ? 1_555 ? 16 AC3 7 A A 3 ? A A 15 . ? 1_555 ? 17 AC3 7 G A 50 ? G A 62 . ? 3_445 ? 18 AC3 7 U A 51 ? U A 63 . ? 3_445 ? 19 AC3 7 G A 68 ? G A 80 . ? 1_555 ? 20 AC3 7 U A 69 ? U A 81 . ? 1_555 ? 21 AC4 4 U A 7 ? U A 19 . ? 1_555 ? 22 AC4 4 A A 9 ? A A 21 . ? 1_555 ? 23 AC4 4 U A 10 ? U A 22 . ? 1_555 ? 24 AC4 4 A A 61 ? A A 73 . ? 1_555 ? 25 AC5 9 G A 11 ? G A 23 . ? 1_555 ? 26 AC5 9 U A 41 ? U A 53 . ? 1_555 ? 27 AC5 9 U A 41 ? U A 53 . ? 4_557 ? 28 AC5 9 G A 43 ? G A 55 . ? 1_555 ? 29 AC5 9 A A 45 ? A A 57 . ? 4_547 ? 30 AC5 9 C A 59 ? C A 71 . ? 4_547 ? 31 AC5 9 A A 61 ? A A 73 . ? 1_555 ? 32 AC5 9 HOH U . ? HOH A 210 . ? 1_555 ? 33 AC5 9 HOH U . ? HOH A 218 . ? 1_555 ? 34 AC6 10 U A 13 ? U A 25 . ? 1_555 ? 35 AC6 10 G A 15 ? G A 27 . ? 1_555 ? 36 AC6 10 U A 33 ? U A 45 . ? 1_555 ? 37 AC6 10 A A 37 ? A A 49 . ? 1_555 ? 38 AC6 10 4PQ B . ? 4PQ A 101 . ? 1_555 ? 39 AC6 10 MG T . ? MG A 119 . ? 1_555 ? 40 AC6 10 HOH U . ? HOH A 234 . ? 1_555 ? 41 AC6 10 HOH U . ? HOH A 236 . ? 1_555 ? 42 AC6 10 HOH U . ? HOH A 245 . ? 1_555 ? 43 AC6 10 HOH U . ? HOH A 264 . ? 1_555 ? 44 AC7 5 U A 38 ? U A 50 . ? 1_565 ? 45 AC7 5 G A 40 ? G A 52 . ? 1_565 ? 46 AC7 5 C A 58 ? C A 70 . ? 1_555 ? 47 AC7 5 C A 59 ? C A 71 . ? 1_555 ? 48 AC7 5 U A 60 ? U A 72 . ? 1_555 ? 49 AC8 9 A A 12 ? A A 24 . ? 1_555 ? 50 AC8 9 U A 13 ? U A 25 . ? 1_555 ? 51 AC8 9 C A 29 ? C A 41 . ? 1_555 ? 52 AC8 9 U A 38 ? U A 50 . ? 1_555 ? 53 AC8 9 G A 40 ? G A 52 . ? 1_555 ? 54 AC8 9 U A 42 ? U A 54 . ? 1_555 ? 55 AC8 9 HOH U . ? HOH A 206 . ? 1_555 ? 56 AC8 9 HOH U . ? HOH A 254 . ? 1_555 ? 57 AC8 9 HOH U . ? HOH A 265 . ? 1_555 ? 58 AC9 5 C A 16 ? C A 28 . ? 1_555 ? 59 AC9 5 G A 17 ? G A 29 . ? 1_555 ? 60 AC9 5 U A 18 ? U A 30 . ? 1_555 ? 61 AC9 5 A A 28 ? A A 40 . ? 1_555 ? 62 AC9 5 HOH U . ? HOH A 272 . ? 1_555 ? 63 AD1 8 G A 11 ? G A 23 . ? 1_555 ? 64 AD1 8 A A 12 ? A A 24 . ? 1_555 ? 65 AD1 8 C A 27 ? C A 39 . ? 1_555 ? 66 AD1 8 A A 28 ? A A 40 . ? 1_555 ? 67 AD1 8 G A 40 ? G A 52 . ? 1_555 ? 68 AD1 8 U A 42 ? U A 54 . ? 1_555 ? 69 AD1 8 G A 43 ? G A 55 . ? 1_555 ? 70 AD1 8 HOH U . ? HOH A 225 . ? 1_555 ? 71 AD2 2 G A 25 ? G A 37 . ? 1_555 ? 72 AD2 2 G A 26 ? G A 38 . ? 1_555 ? 73 AD3 3 G A 1 ? G A 13 . ? 3_555 ? 74 AD3 3 U A 51 ? U A 63 . ? 1_555 ? 75 AD3 3 A A 52 ? A A 64 . ? 1_555 ? 76 AD4 8 C A 14 ? C A 26 . ? 1_545 ? 77 AD4 8 C A 31 ? C A 43 . ? 1_555 ? 78 AD4 8 U A 33 ? U A 45 . ? 1_555 ? 79 AD4 8 A A 37 ? A A 49 . ? 1_555 ? 80 AD4 8 HOH U . ? HOH A 201 . ? 1_555 ? 81 AD4 8 HOH U . ? HOH A 208 . ? 1_555 ? 82 AD4 8 HOH U . ? HOH A 211 . ? 1_555 ? 83 AD4 8 HOH U . ? HOH A 259 . ? 1_555 ? 84 AD5 2 C A 65 ? C A 77 . ? 1_555 ? 85 AD5 2 HOH U . ? HOH A 251 . ? 1_555 ? 86 AD6 3 HOH U . ? HOH A 247 . ? 1_555 ? 87 AD6 3 HOH U . ? HOH A 249 . ? 1_555 ? 88 AD6 3 HOH U . ? HOH A 252 . ? 1_555 ? 89 AD7 5 G A 26 ? G A 38 . ? 1_555 ? 90 AD7 5 C A 48 ? C A 60 . ? 1_555 ? 91 AD7 5 C A 49 ? C A 61 . ? 1_555 ? 92 AD7 5 A A 54 ? A A 66 . ? 1_555 ? 93 AD7 5 U A 55 ? U A 67 . ? 1_555 ? 94 AD8 3 A A 36 ? A A 48 . ? 1_555 ? 95 AD8 3 U A 39 ? U A 51 . ? 1_555 ? 96 AD8 3 4PQ B . ? 4PQ A 101 . ? 1_555 ? 97 AD9 3 U A 34 ? U A 46 . ? 1_555 ? 98 AD9 3 4PQ B . ? 4PQ A 101 . ? 1_555 ? 99 AD9 3 IRI G . ? IRI A 106 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N2 A G 32 ? ? O A HOH 202 ? ? 1.96 2 1 O A HOH 282 ? ? O A HOH 286 ? ? 1.98 3 1 N3 A G 31 ? ? O A HOH 203 ? ? 2.03 4 1 O A HOH 291 ? ? O A HOH 309 ? ? 2.10 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 303 ? ? 1_555 O A HOH 310 ? ? 4_558 1.69 2 1 O A HOH 299 ? ? 1_555 O A HOH 309 ? ? 1_545 1.85 3 1 O A HOH 291 ? ? 1_555 O A HOH 299 ? ? 1_565 2.12 4 1 O A HOH 306 ? ? 1_555 O A HOH 311 ? ? 1_545 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A U 54 ? ? P A U 54 ? ? OP1 A U 54 ? ? 120.78 110.70 10.08 1.20 N 2 1 "O5'" A U 54 ? ? P A U 54 ? ? OP2 A U 54 ? ? 94.32 105.70 -11.38 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4PQ N N N N 1 4PQ CA C N S 2 4PQ CB C N N 3 4PQ CG C Y N 4 4PQ CD1 C Y N 5 4PQ NE1 N Y N 6 4PQ CE2 C Y N 7 4PQ CZ2 C Y N 8 4PQ CH2 C Y N 9 4PQ CZ3 C Y N 10 4PQ CE3 C Y N 11 4PQ CD2 C Y N 12 4PQ C C N N 13 4PQ OXT O N N 14 4PQ O O N N 15 4PQ OAD O N N 16 4PQ H H N N 17 4PQ H2 H N N 18 4PQ HA H N N 19 4PQ H5 H N N 20 4PQ H6 H N N 21 4PQ H7 H N N 22 4PQ H8 H N N 23 4PQ H9 H N N 24 4PQ H10 H N N 25 4PQ H11 H N N 26 4PQ HXT H N N 27 4PQ H13 H N N 28 A OP3 O N N 29 A P P N N 30 A OP1 O N N 31 A OP2 O N N 32 A "O5'" O N N 33 A "C5'" C N N 34 A "C4'" C N R 35 A "O4'" O N N 36 A "C3'" C N S 37 A "O3'" O N N 38 A "C2'" C N R 39 A "O2'" O N N 40 A "C1'" C N R 41 A N9 N Y N 42 A C8 C Y N 43 A N7 N Y N 44 A C5 C Y N 45 A C6 C Y N 46 A N6 N N N 47 A N1 N Y N 48 A C2 C Y N 49 A N3 N Y N 50 A C4 C Y N 51 A HOP3 H N N 52 A HOP2 H N N 53 A "H5'" H N N 54 A "H5''" H N N 55 A "H4'" H N N 56 A "H3'" H N N 57 A "HO3'" H N N 58 A "H2'" H N N 59 A "HO2'" H N N 60 A "H1'" H N N 61 A H8 H N N 62 A H61 H N N 63 A H62 H N N 64 A H2 H N N 65 C OP3 O N N 66 C P P N N 67 C OP1 O N N 68 C OP2 O N N 69 C "O5'" O N N 70 C "C5'" C N N 71 C "C4'" C N R 72 C "O4'" O N N 73 C "C3'" C N S 74 C "O3'" O N N 75 C "C2'" C N R 76 C "O2'" O N N 77 C "C1'" C N R 78 C N1 N N N 79 C C2 C N N 80 C O2 O N N 81 C N3 N N N 82 C C4 C N N 83 C N4 N N N 84 C C5 C N N 85 C C6 C N N 86 C HOP3 H N N 87 C HOP2 H N N 88 C "H5'" H N N 89 C "H5''" H N N 90 C "H4'" H N N 91 C "H3'" H N N 92 C "HO3'" H N N 93 C "H2'" H N N 94 C "HO2'" H N N 95 C "H1'" H N N 96 C H41 H N N 97 C H42 H N N 98 C H5 H N N 99 C H6 H N N 100 G OP3 O N N 101 G P P N N 102 G OP1 O N N 103 G OP2 O N N 104 G "O5'" O N N 105 G "C5'" C N N 106 G "C4'" C N R 107 G "O4'" O N N 108 G "C3'" C N S 109 G "O3'" O N N 110 G "C2'" C N R 111 G "O2'" O N N 112 G "C1'" C N R 113 G N9 N Y N 114 G C8 C Y N 115 G N7 N Y N 116 G C5 C Y N 117 G C6 C N N 118 G O6 O N N 119 G N1 N N N 120 G C2 C N N 121 G N2 N N N 122 G N3 N N N 123 G C4 C Y N 124 G HOP3 H N N 125 G HOP2 H N N 126 G "H5'" H N N 127 G "H5''" H N N 128 G "H4'" H N N 129 G "H3'" H N N 130 G "HO3'" H N N 131 G "H2'" H N N 132 G "HO2'" H N N 133 G "H1'" H N N 134 G H8 H N N 135 G H1 H N N 136 G H21 H N N 137 G H22 H N N 138 HOH O O N N 139 HOH H1 H N N 140 HOH H2 H N N 141 IRI IR IR N N 142 IRI N1 N N N 143 IRI N2 N N N 144 IRI N3 N N N 145 IRI N4 N N N 146 IRI N5 N N N 147 IRI N6 N N N 148 IRI HN11 H N N 149 IRI HN12 H N N 150 IRI HN13 H N N 151 IRI HN21 H N N 152 IRI HN22 H N N 153 IRI HN23 H N N 154 IRI HN31 H N N 155 IRI HN32 H N N 156 IRI HN33 H N N 157 IRI HN41 H N N 158 IRI HN42 H N N 159 IRI HN43 H N N 160 IRI HN51 H N N 161 IRI HN52 H N N 162 IRI HN53 H N N 163 IRI HN61 H N N 164 IRI HN62 H N N 165 IRI HN63 H N N 166 MG MG MG N N 167 U OP3 O N N 168 U P P N N 169 U OP1 O N N 170 U OP2 O N N 171 U "O5'" O N N 172 U "C5'" C N N 173 U "C4'" C N R 174 U "O4'" O N N 175 U "C3'" C N S 176 U "O3'" O N N 177 U "C2'" C N R 178 U "O2'" O N N 179 U "C1'" C N R 180 U N1 N N N 181 U C2 C N N 182 U O2 O N N 183 U N3 N N N 184 U C4 C N N 185 U O4 O N N 186 U C5 C N N 187 U C6 C N N 188 U HOP3 H N N 189 U HOP2 H N N 190 U "H5'" H N N 191 U "H5''" H N N 192 U "H4'" H N N 193 U "H3'" H N N 194 U "HO3'" H N N 195 U "H2'" H N N 196 U "HO2'" H N N 197 U "H1'" H N N 198 U H3 H N N 199 U H5 H N N 200 U H6 H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4PQ OAD CZ3 sing N N 1 4PQ CZ3 CE3 doub Y N 2 4PQ CZ3 CH2 sing Y N 3 4PQ CE3 CD2 sing Y N 4 4PQ CH2 CZ2 doub Y N 5 4PQ CD2 CE2 doub Y N 6 4PQ CD2 CG sing Y N 7 4PQ CZ2 CE2 sing Y N 8 4PQ CB CG sing N N 9 4PQ CB CA sing N N 10 4PQ CE2 NE1 sing Y N 11 4PQ N CA sing N N 12 4PQ CG CD1 doub Y N 13 4PQ CA C sing N N 14 4PQ NE1 CD1 sing Y N 15 4PQ C O doub N N 16 4PQ C OXT sing N N 17 4PQ N H sing N N 18 4PQ N H2 sing N N 19 4PQ CA HA sing N N 20 4PQ CB H5 sing N N 21 4PQ CB H6 sing N N 22 4PQ CD1 H7 sing N N 23 4PQ NE1 H8 sing N N 24 4PQ CZ2 H9 sing N N 25 4PQ CH2 H10 sing N N 26 4PQ CE3 H11 sing N N 27 4PQ OXT HXT sing N N 28 4PQ OAD H13 sing N N 29 A OP3 P sing N N 30 A OP3 HOP3 sing N N 31 A P OP1 doub N N 32 A P OP2 sing N N 33 A P "O5'" sing N N 34 A OP2 HOP2 sing N N 35 A "O5'" "C5'" sing N N 36 A "C5'" "C4'" sing N N 37 A "C5'" "H5'" sing N N 38 A "C5'" "H5''" sing N N 39 A "C4'" "O4'" sing N N 40 A "C4'" "C3'" sing N N 41 A "C4'" "H4'" sing N N 42 A "O4'" "C1'" sing N N 43 A "C3'" "O3'" sing N N 44 A "C3'" "C2'" sing N N 45 A "C3'" "H3'" sing N N 46 A "O3'" "HO3'" sing N N 47 A "C2'" "O2'" sing N N 48 A "C2'" "C1'" sing N N 49 A "C2'" "H2'" sing N N 50 A "O2'" "HO2'" sing N N 51 A "C1'" N9 sing N N 52 A "C1'" "H1'" sing N N 53 A N9 C8 sing Y N 54 A N9 C4 sing Y N 55 A C8 N7 doub Y N 56 A C8 H8 sing N N 57 A N7 C5 sing Y N 58 A C5 C6 sing Y N 59 A C5 C4 doub Y N 60 A C6 N6 sing N N 61 A C6 N1 doub Y N 62 A N6 H61 sing N N 63 A N6 H62 sing N N 64 A N1 C2 sing Y N 65 A C2 N3 doub Y N 66 A C2 H2 sing N N 67 A N3 C4 sing Y N 68 C OP3 P sing N N 69 C OP3 HOP3 sing N N 70 C P OP1 doub N N 71 C P OP2 sing N N 72 C P "O5'" sing N N 73 C OP2 HOP2 sing N N 74 C "O5'" "C5'" sing N N 75 C "C5'" "C4'" sing N N 76 C "C5'" "H5'" sing N N 77 C "C5'" "H5''" sing N N 78 C "C4'" "O4'" sing N N 79 C "C4'" "C3'" sing N N 80 C "C4'" "H4'" sing N N 81 C "O4'" "C1'" sing N N 82 C "C3'" "O3'" sing N N 83 C "C3'" "C2'" sing N N 84 C "C3'" "H3'" sing N N 85 C "O3'" "HO3'" sing N N 86 C "C2'" "O2'" sing N N 87 C "C2'" "C1'" sing N N 88 C "C2'" "H2'" sing N N 89 C "O2'" "HO2'" sing N N 90 C "C1'" N1 sing N N 91 C "C1'" "H1'" sing N N 92 C N1 C2 sing N N 93 C N1 C6 sing N N 94 C C2 O2 doub N N 95 C C2 N3 sing N N 96 C N3 C4 doub N N 97 C C4 N4 sing N N 98 C C4 C5 sing N N 99 C N4 H41 sing N N 100 C N4 H42 sing N N 101 C C5 C6 doub N N 102 C C5 H5 sing N N 103 C C6 H6 sing N N 104 G OP3 P sing N N 105 G OP3 HOP3 sing N N 106 G P OP1 doub N N 107 G P OP2 sing N N 108 G P "O5'" sing N N 109 G OP2 HOP2 sing N N 110 G "O5'" "C5'" sing N N 111 G "C5'" "C4'" sing N N 112 G "C5'" "H5'" sing N N 113 G "C5'" "H5''" sing N N 114 G "C4'" "O4'" sing N N 115 G "C4'" "C3'" sing N N 116 G "C4'" "H4'" sing N N 117 G "O4'" "C1'" sing N N 118 G "C3'" "O3'" sing N N 119 G "C3'" "C2'" sing N N 120 G "C3'" "H3'" sing N N 121 G "O3'" "HO3'" sing N N 122 G "C2'" "O2'" sing N N 123 G "C2'" "C1'" sing N N 124 G "C2'" "H2'" sing N N 125 G "O2'" "HO2'" sing N N 126 G "C1'" N9 sing N N 127 G "C1'" "H1'" sing N N 128 G N9 C8 sing Y N 129 G N9 C4 sing Y N 130 G C8 N7 doub Y N 131 G C8 H8 sing N N 132 G N7 C5 sing Y N 133 G C5 C6 sing N N 134 G C5 C4 doub Y N 135 G C6 O6 doub N N 136 G C6 N1 sing N N 137 G N1 C2 sing N N 138 G N1 H1 sing N N 139 G C2 N2 sing N N 140 G C2 N3 doub N N 141 G N2 H21 sing N N 142 G N2 H22 sing N N 143 G N3 C4 sing N N 144 HOH O H1 sing N N 145 HOH O H2 sing N N 146 IRI IR N1 sing N N 147 IRI IR N2 sing N N 148 IRI IR N3 sing N N 149 IRI IR N4 sing N N 150 IRI IR N5 sing N N 151 IRI IR N6 sing N N 152 IRI N1 HN11 sing N N 153 IRI N1 HN12 sing N N 154 IRI N1 HN13 sing N N 155 IRI N2 HN21 sing N N 156 IRI N2 HN22 sing N N 157 IRI N2 HN23 sing N N 158 IRI N3 HN31 sing N N 159 IRI N3 HN32 sing N N 160 IRI N3 HN33 sing N N 161 IRI N4 HN41 sing N N 162 IRI N4 HN42 sing N N 163 IRI N4 HN43 sing N N 164 IRI N5 HN51 sing N N 165 IRI N5 HN52 sing N N 166 IRI N5 HN53 sing N N 167 IRI N6 HN61 sing N N 168 IRI N6 HN62 sing N N 169 IRI N6 HN63 sing N N 170 U OP3 P sing N N 171 U OP3 HOP3 sing N N 172 U P OP1 doub N N 173 U P OP2 sing N N 174 U P "O5'" sing N N 175 U OP2 HOP2 sing N N 176 U "O5'" "C5'" sing N N 177 U "C5'" "C4'" sing N N 178 U "C5'" "H5'" sing N N 179 U "C5'" "H5''" sing N N 180 U "C4'" "O4'" sing N N 181 U "C4'" "C3'" sing N N 182 U "C4'" "H4'" sing N N 183 U "O4'" "C1'" sing N N 184 U "C3'" "O3'" sing N N 185 U "C3'" "C2'" sing N N 186 U "C3'" "H3'" sing N N 187 U "O3'" "HO3'" sing N N 188 U "C2'" "O2'" sing N N 189 U "C2'" "C1'" sing N N 190 U "C2'" "H2'" sing N N 191 U "O2'" "HO2'" sing N N 192 U "C1'" N1 sing N N 193 U "C1'" "H1'" sing N N 194 U N1 C2 sing N N 195 U N1 C6 sing N N 196 U C2 O2 doub N N 197 U C2 N3 sing N N 198 U N3 C4 sing N N 199 U N3 H3 sing N N 200 U C4 O4 doub N N 201 U C4 C5 sing N N 202 U C5 C6 doub N N 203 U C5 H5 sing N N 204 U C6 H6 sing N N 205 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5KPY 'double helix' 5KPY 'a-form double helix' 5KPY 'mismatched base pair' 5KPY 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 71 1_555 -0.203 -0.129 -0.061 -5.742 -4.434 -2.171 1 A_G13:C83_A A 13 ? A 83 ? 19 1 1 A G 2 1_555 A C 70 1_555 -0.215 0.036 -0.277 -10.516 -19.217 3.310 2 A_G14:C82_A A 14 ? A 82 ? 19 1 1 A A 3 1_555 A U 69 1_555 -0.366 -0.222 0.294 2.213 -5.975 0.690 3 A_A15:U81_A A 15 ? A 81 ? 20 1 1 A C 4 1_555 A G 68 1_555 0.091 -0.122 0.191 2.281 -9.382 -3.356 4 A_C16:G80_A A 16 ? A 80 ? 19 1 1 A A 5 1_555 A U 67 1_555 0.154 -0.220 -0.039 -3.341 -7.033 0.680 5 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 6 1_555 A G 66 1_555 0.309 -0.243 0.127 -5.217 -3.905 -1.826 6 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A U 7 1_555 A C 65 1_555 5.488 -1.994 -0.117 -5.274 -1.413 -19.730 7 A_U19:C77_A A 19 ? A 77 ? ? ? 1 A G 8 1_555 A A 64 1_555 7.194 -5.053 0.693 22.654 3.870 -16.730 8 A_G20:A76_A A 20 ? A 76 ? ? ? 1 A G 35 1_555 A C 63 1_555 0.052 -0.121 0.145 2.144 -3.245 1.560 9 A_G47:C75_A A 47 ? A 75 ? 19 1 1 A G 11 1_555 A G 40 1_555 -3.262 -8.245 -0.592 17.174 28.597 -168.187 10 A_G23:G52_A A 23 ? A 52 ? 4 12 1 A A 12 1_555 A A 61 1_555 -3.988 1.272 -0.528 2.775 -33.102 -112.956 11 A_A24:A73_A A 24 ? A 73 ? 5 4 1 A U 10 1_555 A A 62 1_555 -0.043 -1.174 -0.367 -21.909 -1.589 -164.864 12 A_U22:A74_A A 22 ? A 74 ? 21 2 1 A U 39 1_555 A A 9 1_555 4.212 -1.688 -1.495 34.728 -31.615 -103.955 13 A_U51:A21_A A 51 ? A 21 ? 24 4 1 A C 27 1_555 A G 19 1_555 0.802 -0.172 0.363 -9.744 3.317 2.970 14 A_C39:G31_A A 39 ? A 31 ? 19 1 1 A A 28 1_555 A U 18 1_555 0.281 0.233 -0.030 6.029 -2.969 0.860 15 A_A40:U30_A A 40 ? A 30 ? 20 1 1 A C 29 1_555 A G 17 1_555 -0.008 -0.010 0.014 7.588 -10.300 4.094 16 A_C41:G29_A A 41 ? A 29 ? 19 1 1 A G 30 1_555 A C 16 1_555 -0.227 -0.249 0.150 -1.058 -8.364 0.286 17 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A C 31 1_555 A G 15 1_555 0.440 -0.211 -0.024 -4.181 -7.796 0.395 18 A_C43:G27_A A 43 ? A 27 ? 19 1 1 A A 32 1_555 A U 13 1_555 0.185 -0.113 -0.168 -23.421 -14.570 3.410 19 A_A44:U25_A A 44 ? A 25 ? 20 1 1 A U 33 1_555 A A 37 1_555 4.357 -2.164 0.653 -5.427 13.525 -97.163 20 A_U45:A49_A A 45 ? A 49 ? 24 4 1 A A 23 1_555 A A 52 1_555 -4.533 1.729 -0.313 -2.170 -4.914 -114.568 21 A_A35:A64_A A 35 ? A 64 ? 5 4 1 A C 49 1_555 A G 25 1_555 0.248 0.118 0.845 -13.285 -7.416 -4.664 22 A_C61:G37_A A 61 ? A 37 ? 19 1 1 A A 53 1_555 A U 22 1_555 -4.274 -1.939 -0.525 1.783 -9.803 -97.917 23 A_A65:U34_A A 65 ? A 34 ? 24 4 1 A G 26 1_555 A C 48 1_555 0.152 -0.186 0.308 21.789 -11.635 -1.996 24 A_G38:C60_A A 38 ? A 60 ? 19 1 1 A U 55 1_555 A A 47 1_555 -0.115 -0.329 -0.316 -4.132 -5.829 2.642 25 A_U67:A59_A A 67 ? A 59 ? 20 1 1 A G 56 1_555 A C 46 1_555 -0.388 -0.379 0.018 -4.206 -11.257 -1.738 26 A_G68:C58_A A 68 ? A 58 ? 19 1 1 A U 57 1_555 A A 45 1_555 -0.109 -0.202 0.176 5.811 -5.696 -0.288 27 A_U69:A57_A A 69 ? A 57 ? 20 1 1 A C 58 1_555 A G 44 1_555 0.455 -0.343 0.006 10.546 -9.649 0.525 28 A_C70:G56_A A 70 ? A 56 ? 19 1 1 A C 59 1_555 A G 43 1_555 0.170 -0.228 -0.375 9.049 -10.732 2.969 29 A_C71:G55_A A 71 ? A 55 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 71 1_555 A G 2 1_555 A C 70 1_555 -0.092 -1.998 3.492 -0.499 10.188 31.866 -5.122 0.079 2.742 17.988 0.882 33.418 1 AA_G13G14:C82C83_AA A 13 ? A 83 ? A 14 ? A 82 ? 1 A G 2 1_555 A C 70 1_555 A A 3 1_555 A U 69 1_555 -0.657 -1.641 2.764 -5.314 6.770 30.324 -4.046 0.408 2.427 12.626 9.911 31.494 2 AA_G14A15:U81C82_AA A 14 ? A 82 ? A 15 ? A 81 ? 1 A A 3 1_555 A U 69 1_555 A C 4 1_555 A G 68 1_555 0.524 -1.225 3.270 3.683 7.461 34.032 -3.125 -0.333 2.982 12.516 -6.179 35.005 3 AA_A15C16:G80U81_AA A 15 ? A 81 ? A 16 ? A 80 ? 1 A C 4 1_555 A G 68 1_555 A A 5 1_555 A U 67 1_555 0.575 -1.874 3.272 2.153 8.404 32.241 -4.570 -0.666 2.742 14.801 -3.791 33.358 4 AA_C16A17:U79G80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 5 1_555 A U 67 1_555 A C 6 1_555 A G 66 1_555 0.096 -2.033 3.275 -0.190 2.364 32.377 -4.042 -0.205 3.122 4.232 0.341 32.461 5 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 6 1_555 A G 66 1_555 A U 7 1_555 A C 65 1_555 -1.331 -1.756 3.407 5.276 3.341 50.871 -2.263 1.905 3.150 3.873 -6.116 51.227 6 AA_C18U19:C77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A U 7 1_555 A C 65 1_555 A G 8 1_555 A A 64 1_555 0.313 -1.015 2.912 3.447 6.773 41.323 -2.030 -0.125 2.736 9.501 -4.836 41.986 7 AA_U19G20:A76C77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A G 8 1_555 A A 64 1_555 A G 35 1_555 A C 63 1_555 -3.557 2.803 3.360 -14.080 3.924 50.661 2.856 2.911 4.330 4.480 16.074 52.593 8 AA_G20G47:C75A76_AA A 20 ? A 76 ? A 47 ? A 75 ? 1 A G 11 1_555 A G 40 1_555 A A 12 1_555 A A 61 1_555 -1.783 2.111 -3.691 -0.784 -0.954 -48.334 -2.661 -2.108 -3.678 1.165 -0.958 -48.348 9 AA_G23A24:A73G52_AA A 23 ? A 52 ? A 24 ? A 73 ? 1 A A 12 1_555 A A 61 1_555 A U 10 1_555 A A 62 1_555 -0.164 3.894 1.197 -129.344 -120.197 -57.811 -1.146 -0.945 2.794 60.701 -65.321 -176.998 10 AA_A24U22:A74A73_AA A 24 ? A 73 ? A 22 ? A 74 ? 1 A U 10 1_555 A A 62 1_555 A U 39 1_555 A A 9 1_555 -4.294 -2.763 0.690 -144.770 62.890 61.481 -1.796 1.267 2.784 33.582 77.305 160.985 11 AA_U22U51:A21A74_AA A 22 ? A 74 ? A 51 ? A 21 ? 1 A C 27 1_555 A G 19 1_555 A A 28 1_555 A U 18 1_555 -0.037 -2.574 2.926 4.893 -5.556 15.687 -5.000 3.240 3.459 -19.035 -16.765 17.336 12 AA_C39A40:U30G31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A A 28 1_555 A U 18 1_555 A C 29 1_555 A G 17 1_555 0.341 -1.864 3.175 0.766 4.166 31.472 -4.123 -0.491 2.917 7.637 -1.405 31.749 13 AA_A40C41:G29U30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A C 29 1_555 A G 17 1_555 A G 30 1_555 A C 16 1_555 -0.512 -1.888 3.481 -3.329 5.150 30.080 -4.607 0.297 3.158 9.795 6.331 30.685 14 AA_C41G42:C28G29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 30 1_555 A C 16 1_555 A C 31 1_555 A G 15 1_555 0.437 -1.889 3.369 2.591 1.903 35.640 -3.353 -0.331 3.289 3.101 -4.223 35.780 15 AA_G42C43:G27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A C 31 1_555 A G 15 1_555 A A 32 1_555 A U 13 1_555 3.095 -0.263 3.736 5.230 14.284 57.503 -1.118 -2.815 3.824 14.569 -5.334 59.314 16 AA_C43A44:U25G27_AA A 43 ? A 27 ? A 44 ? A 25 ? 1 A A 32 1_555 A U 13 1_555 A U 33 1_555 A A 37 1_555 -1.427 -1.789 2.938 -1.831 -4.104 85.260 -1.234 1.014 3.029 -3.028 1.351 85.355 17 AA_A44U45:A49U25_AA A 44 ? A 25 ? A 45 ? A 49 ? 1 A A 23 1_555 A A 52 1_555 A C 49 1_555 A G 25 1_555 3.152 0.092 -3.491 -3.099 -5.678 139.572 0.015 -1.661 -3.523 -3.025 1.651 139.639 18 AA_A35C61:G37A64_AA A 35 ? A 64 ? A 61 ? A 37 ? 1 A C 49 1_555 A G 25 1_555 A A 53 1_555 A U 22 1_555 1.713 -4.453 -5.492 -83.221 138.179 -175.845 2.309 0.907 -5.321 -69.095 -41.613 -179.325 19 AA_C61A65:U34G37_AA A 61 ? A 37 ? A 65 ? A 34 ? 1 A G 26 1_555 A C 48 1_555 A U 55 1_555 A A 47 1_555 -2.243 -1.192 3.406 -4.890 11.329 55.948 -1.889 2.065 3.297 11.915 5.143 57.185 20 AA_G38U67:A59C60_AA A 38 ? A 60 ? A 67 ? A 59 ? 1 A U 55 1_555 A A 47 1_555 A G 56 1_555 A C 46 1_555 -0.850 -2.146 3.403 -1.116 2.098 26.063 -5.320 1.568 3.256 4.641 2.468 26.170 21 AA_U67G68:C58A59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A G 56 1_555 A C 46 1_555 A U 57 1_555 A A 45 1_555 -0.045 -1.491 3.017 -3.757 2.127 30.774 -3.154 -0.571 2.895 3.984 7.036 31.068 22 AA_G68U69:A57C58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A U 57 1_555 A A 45 1_555 A C 58 1_555 A G 44 1_555 -0.181 -2.039 3.011 -1.902 3.120 34.713 -3.823 0.043 2.829 5.212 3.177 34.899 23 AA_U69C70:G56A57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A C 58 1_555 A G 44 1_555 A C 59 1_555 A G 43 1_555 -0.285 -2.467 3.240 -0.389 6.433 24.755 -7.216 0.544 2.532 14.690 0.889 25.568 24 AA_C70C71:G55G56_AA A 70 ? A 56 ? A 71 ? A 55 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1150834 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5KPY _atom_sites.fract_transf_matrix[1][1] 0.007840 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002295 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037603 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016443 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H IR MG N O P # loop_