data_5KUB # _entry.id 5KUB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5KUB pdb_00005kub 10.2210/pdb5kub/pdb WWPDB D_1000222751 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5KUB _pdbx_database_status.recvd_initial_deposition_date 2016-07-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mullins, E.A.' 1 'Eichman, B.F.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 138 _citation.language ? _citation.page_first 11485 _citation.page_last 11488 _citation.title 'A Catalytic Role for C-H/ pi Interactions in Base Excision Repair by Bacillus cereus DNA Glycosylase AlkD.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.6b07399 _citation.pdbx_database_id_PubMed 27571247 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parsons, Z.D.' 1 ? primary 'Bland, J.M.' 2 ? primary 'Mullins, E.A.' 3 ? primary 'Eichman, B.F.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 112.540 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5KUB _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.450 _cell.length_a_esd ? _cell.length_b 93.603 _cell.length_b_esd ? _cell.length_c 47.991 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA-7-methylguanine glycosylase' 28578.043 1 3.2.2.- ? ? ? 2 polymer syn ;DNA (5'-D(*CP*CP*CP*GP*AP*(NRI)P*AP*GP*TP*CP*CP*G)-3') ; 3498.286 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*GP*GP*AP*CP*TP*CP*TP*CP*GP*GP*G)-3') ; 3679.391 1 ? ? ? ? 4 non-polymer syn 2-amino-7-methyl-1,7-dihydro-6H-purin-6-one 165.153 1 ? ? ? ? 5 water nat water 18.015 329 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name AlkD # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPVPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREF QAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLK YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETL S ; ;GPVPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREF QAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLK YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETL S ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DC)(DG)(DA)(NRI)(DA)(DG)(DT)(DC)(DC)(DG)' CCCGAXAGTCCG B ? 3 polydeoxyribonucleotide no no '(DC)(DG)(DG)(DA)(DC)(DT)(DC)(DT)(DC)(DG)(DG)(DG)' CGGACTCTCGGG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 VAL n 1 4 PRO n 1 5 MET n 1 6 HIS n 1 7 PRO n 1 8 PHE n 1 9 VAL n 1 10 LYS n 1 11 ALA n 1 12 LEU n 1 13 GLN n 1 14 GLU n 1 15 HIS n 1 16 PHE n 1 17 THR n 1 18 ALA n 1 19 HIS n 1 20 GLN n 1 21 ASN n 1 22 PRO n 1 23 GLU n 1 24 LYS n 1 25 ALA n 1 26 GLU n 1 27 PRO n 1 28 MET n 1 29 ALA n 1 30 ARG n 1 31 TYR n 1 32 MET n 1 33 LYS n 1 34 ASN n 1 35 HIS n 1 36 PHE n 1 37 LEU n 1 38 PHE n 1 39 LEU n 1 40 GLY n 1 41 ILE n 1 42 GLN n 1 43 THR n 1 44 PRO n 1 45 GLU n 1 46 ARG n 1 47 ARG n 1 48 GLN n 1 49 LEU n 1 50 LEU n 1 51 LYS n 1 52 ASP n 1 53 ILE n 1 54 ILE n 1 55 GLN n 1 56 ILE n 1 57 HIS n 1 58 THR n 1 59 LEU n 1 60 PRO n 1 61 ASP n 1 62 GLN n 1 63 LYS n 1 64 ASP n 1 65 PHE n 1 66 GLN n 1 67 ILE n 1 68 ILE n 1 69 ILE n 1 70 ARG n 1 71 GLU n 1 72 LEU n 1 73 TRP n 1 74 ASP n 1 75 LEU n 1 76 PRO n 1 77 GLU n 1 78 ARG n 1 79 GLU n 1 80 PHE n 1 81 GLN n 1 82 ALA n 1 83 ALA n 1 84 ALA n 1 85 LEU n 1 86 ASP n 1 87 ILE n 1 88 MET n 1 89 GLN n 1 90 LYS n 1 91 TYR n 1 92 LYS n 1 93 LYS n 1 94 HIS n 1 95 ILE n 1 96 ASN n 1 97 GLU n 1 98 THR n 1 99 HIS n 1 100 ILE n 1 101 PRO n 1 102 PHE n 1 103 LEU n 1 104 GLU n 1 105 GLU n 1 106 LEU n 1 107 ILE n 1 108 VAL n 1 109 THR n 1 110 LYS n 1 111 SER n 1 112 TRP n 1 113 TRP n 1 114 ASP n 1 115 SER n 1 116 VAL n 1 117 ASP n 1 118 SER n 1 119 ILE n 1 120 VAL n 1 121 PRO n 1 122 THR n 1 123 PHE n 1 124 LEU n 1 125 GLY n 1 126 ASP n 1 127 ILE n 1 128 PHE n 1 129 LEU n 1 130 LYS n 1 131 HIS n 1 132 PRO n 1 133 GLU n 1 134 LEU n 1 135 ILE n 1 136 SER n 1 137 ALA n 1 138 TYR n 1 139 ILE n 1 140 PRO n 1 141 LYS n 1 142 TRP n 1 143 ILE n 1 144 ALA n 1 145 SER n 1 146 ASP n 1 147 ASN n 1 148 ILE n 1 149 TRP n 1 150 LEU n 1 151 GLN n 1 152 ARG n 1 153 ALA n 1 154 ALA n 1 155 ILE n 1 156 LEU n 1 157 PHE n 1 158 GLN n 1 159 LEU n 1 160 LYS n 1 161 TYR n 1 162 LYS n 1 163 GLN n 1 164 LYS n 1 165 MET n 1 166 ASP n 1 167 GLU n 1 168 GLU n 1 169 LEU n 1 170 LEU n 1 171 PHE n 1 172 TRP n 1 173 ILE n 1 174 ILE n 1 175 GLY n 1 176 GLN n 1 177 LEU n 1 178 HIS n 1 179 SER n 1 180 SER n 1 181 LYS n 1 182 GLU n 1 183 PHE n 1 184 PHE n 1 185 ILE n 1 186 GLN n 1 187 LYS n 1 188 ALA n 1 189 ILE n 1 190 GLY n 1 191 TRP n 1 192 VAL n 1 193 LEU n 1 194 ARG n 1 195 GLU n 1 196 TYR n 1 197 ALA n 1 198 LYS n 1 199 THR n 1 200 ASN n 1 201 PRO n 1 202 ASP n 1 203 VAL n 1 204 VAL n 1 205 TRP n 1 206 GLU n 1 207 TYR n 1 208 VAL n 1 209 GLN n 1 210 ASN n 1 211 ASN n 1 212 GLU n 1 213 LEU n 1 214 ALA n 1 215 PRO n 1 216 LEU n 1 217 SER n 1 218 LYS n 1 219 ARG n 1 220 GLU n 1 221 ALA n 1 222 ILE n 1 223 LYS n 1 224 HIS n 1 225 ILE n 1 226 LYS n 1 227 GLN n 1 228 ASN n 1 229 TYR n 1 230 GLY n 1 231 ILE n 1 232 ASN n 1 233 ASN n 1 234 GLU n 1 235 LYS n 1 236 ILE n 1 237 GLY n 1 238 GLU n 1 239 THR n 1 240 LEU n 1 241 SER n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 NRI n 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DC n 2 11 DC n 2 12 DG n 3 1 DC n 3 2 DG n 3 3 DG n 3 4 DA n 3 5 DC n 3 6 DT n 3 7 DC n 3 8 DT n 3 9 DC n 3 10 DG n 3 11 DG n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 241 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene bcere0015_46090 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus cereus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1396 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 14579 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HMS174 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBG103 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'synthetic construct' ? 32630 ? 3 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP C2T7T7_BACCE C2T7T7 ? 1 ;MHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAA LDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQK MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNYGINNEKIGETLS ; 1 2 PDB 5KUB 5KUB ? 2 ? 1 3 PDB 5KUB 5KUB ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5KUB A 5 ? 241 ? C2T7T7 1 ? 237 ? 1 237 2 2 5KUB B 1 ? 12 ? 5KUB 1 ? 12 ? 1 12 3 3 5KUB C 1 ? 12 ? 5KUB 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5KUB GLY A 1 ? UNP C2T7T7 ? ? 'expression tag' -3 1 1 5KUB PRO A 2 ? UNP C2T7T7 ? ? 'expression tag' -2 2 1 5KUB VAL A 3 ? UNP C2T7T7 ? ? 'expression tag' -1 3 1 5KUB PRO A 4 ? UNP C2T7T7 ? ? 'expression tag' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MY6 non-polymer . 2-amino-7-methyl-1,7-dihydro-6H-purin-6-one ? 'C6 H7 N5 O' 165.153 NRI 'DNA linking' . 'PHOSPHORIC ACID MONO-(4-HYDROXY-PYRROLIDIN-3-YLMETHYL) ESTER' ? 'C5 H12 N O5 P' 197.126 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5KUB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '17% w/v PEG4000, 42 mM sodium acetate, pH 4.6, 85 mM ammonium acetate, 5% v/v glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-02 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Diamond (111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 19.040 _reflns.entry_id 5KUB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.730 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31957 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.300 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 23.562 _reflns.pdbx_netI_over_sigmaI 15.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.260 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.067 _reflns.pdbx_Rpim_I_all 0.026 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 202151 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.730 1.790 ? 9.0 ? ? ? ? ? 96.200 ? ? ? ? 0.215 ? ? ? ? ? ? ? ? 6.000 ? ? ? ? ? ? ? 1 1 0.987 ? 1.790 1.860 ? 11.7 ? ? ? ? ? 96.900 ? ? ? ? 0.176 ? ? ? ? ? ? ? ? 6.200 ? ? ? ? ? ? ? 2 1 0.991 ? 1.860 1.950 ? 15.2 ? ? ? ? ? 96.800 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 6.200 ? ? ? ? ? ? ? 3 1 0.993 ? 1.950 2.050 ? 20.6 ? ? ? ? ? 97.300 ? ? ? ? 0.110 ? ? ? ? ? ? ? ? 6.300 ? ? ? ? ? ? ? 4 1 0.995 ? 2.050 2.180 ? 26.0 ? ? ? ? ? 97.800 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 6.300 ? ? ? ? ? ? ? 5 1 0.996 ? 2.180 2.350 ? 28.1 ? ? ? ? ? 97.900 ? ? ? ? 0.077 ? ? ? ? ? ? ? ? 6.400 ? ? ? ? ? ? ? 6 1 0.997 ? 2.350 2.580 ? 28.7 ? ? ? ? ? 98.400 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 6.500 ? ? ? ? ? ? ? 7 1 0.997 ? 2.580 2.960 ? 28.2 ? ? ? ? ? 98.700 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 6.500 ? ? ? ? ? ? ? 8 1 0.997 ? 2.960 3.730 ? 24.3 ? ? ? ? ? 99.000 ? ? ? ? 0.057 ? ? ? ? ? ? ? ? 6.500 ? ? ? ? ? ? ? 9 1 0.998 ? 3.730 50.000 ? 23.2 ? ? ? ? ? 98.200 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 6.300 ? ? ? ? ? ? ? 10 1 0.998 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 113.040 _refine.B_iso_mean 30.4316 _refine.B_iso_min 12.590 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5KUB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7300 _refine.ls_d_res_low 35.0310 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 31900 _refine.ls_number_reflns_R_free 1595 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.5200 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1429 _refine.ls_R_factor_R_free 0.1798 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1410 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 3BVS' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 18.3100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.7300 _refine_hist.d_res_low 35.0310 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 329 _refine_hist.number_atoms_total 2774 _refine_hist.pdbx_number_residues_total 255 _refine_hist.pdbx_B_iso_mean_ligand 29.50 _refine_hist.pdbx_B_iso_mean_solvent 38.14 _refine_hist.pdbx_number_atoms_protein 1951 _refine_hist.pdbx_number_atoms_nucleic_acid 475 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 2569 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.028 ? 3582 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.058 ? 384 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 372 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 16.578 ? 1447 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7301 1.7859 2809 . 140 2669 95.0000 . . . 0.1984 . 0.1599 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 1.7859 1.8497 2868 . 145 2723 97.0000 . . . 0.2106 . 0.1588 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 1.8497 1.9238 2857 . 144 2713 96.0000 . . . 0.2124 . 0.1479 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 1.9238 2.0113 2874 . 145 2729 97.0000 . . . 0.1892 . 0.1530 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.0113 2.1174 2897 . 140 2757 98.0000 . . . 0.2082 . 0.1488 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.1174 2.2500 2898 . 146 2752 98.0000 . . . 0.1785 . 0.1390 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.2500 2.4237 2912 . 151 2761 98.0000 . . . 0.1897 . 0.1379 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.4237 2.6675 2916 . 146 2770 99.0000 . . . 0.1898 . 0.1496 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 2.6675 3.0533 2943 . 147 2796 99.0000 . . . 0.1811 . 0.1454 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.0533 3.8461 2963 . 145 2818 99.0000 . . . 0.1741 . 0.1381 . . . . . . 11 . . . 'X-RAY DIFFRACTION' 3.8461 35.0383 2963 . 146 2817 98.0000 . . . 0.1553 . 0.1288 . . . . . . 11 . . . # _struct.entry_id 5KUB _struct.title 'Bacillus cereus DNA glycosylase AlkD bound to 7-methylguanine nucleobase and DNA containing an oxocarbenium-intermediate analog' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5KUB _struct_keywords.text 'DNA Glycosylase, Protein-DNA Complex, HEAT-Like Repeat, HYDROLASE-DNA complex' _struct_keywords.pdbx_keywords HYDROLASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 6 ? HIS A 19 ? HIS A 2 HIS A 15 1 ? 14 HELX_P HELX_P2 AA2 ASN A 21 ? MET A 32 ? ASN A 17 MET A 28 1 ? 12 HELX_P HELX_P3 AA3 GLN A 42 ? THR A 58 ? GLN A 38 THR A 54 1 ? 17 HELX_P HELX_P4 AA4 ASP A 61 ? LYS A 63 ? ASP A 57 LYS A 59 5 ? 3 HELX_P HELX_P5 AA5 ASP A 64 ? LEU A 75 ? ASP A 60 LEU A 71 1 ? 12 HELX_P HELX_P6 AA6 GLU A 77 ? TYR A 91 ? GLU A 73 TYR A 87 1 ? 15 HELX_P HELX_P7 AA7 LYS A 92 ? ILE A 95 ? LYS A 88 ILE A 91 5 ? 4 HELX_P HELX_P8 AA8 ASN A 96 ? THR A 98 ? ASN A 92 THR A 94 5 ? 3 HELX_P HELX_P9 AA9 HIS A 99 ? VAL A 108 ? HIS A 95 VAL A 104 1 ? 10 HELX_P HELX_P10 AB1 TRP A 112 ? VAL A 120 ? TRP A 108 VAL A 116 1 ? 9 HELX_P HELX_P11 AB2 THR A 122 ? HIS A 131 ? THR A 118 HIS A 127 1 ? 10 HELX_P HELX_P12 AB3 PRO A 132 ? ALA A 137 ? PRO A 128 ALA A 133 5 ? 6 HELX_P HELX_P13 AB4 TYR A 138 ? SER A 145 ? TYR A 134 SER A 141 1 ? 8 HELX_P HELX_P14 AB5 ASN A 147 ? PHE A 157 ? ASN A 143 PHE A 153 1 ? 11 HELX_P HELX_P15 AB6 TYR A 161 ? MET A 165 ? TYR A 157 MET A 161 5 ? 5 HELX_P HELX_P16 AB7 ASP A 166 ? HIS A 178 ? ASP A 162 HIS A 174 1 ? 13 HELX_P HELX_P17 AB8 GLU A 182 ? ALA A 197 ? GLU A 178 ALA A 193 1 ? 16 HELX_P HELX_P18 AB9 ASN A 200 ? ASN A 211 ? ASN A 196 ASN A 207 1 ? 12 HELX_P HELX_P19 AC1 ALA A 214 ? LYS A 223 ? ALA A 210 LYS A 219 1 ? 10 HELX_P HELX_P20 AC2 ILE A 225 ? GLY A 230 ? ILE A 221 GLY A 226 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DA 5 "O3'" ? ? ? 1_555 B NRI 6 P ? ? B DA 5 B NRI 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? B NRI 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B NRI 6 B DA 7 1_555 ? ? ? ? ? ? ? 1.595 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 1 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 1 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 1 C DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 2 C DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 3 C DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 4 C DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 5 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 7 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 7 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 8 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 9 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 10 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 10 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 10 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 11 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 12 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id MY6 _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'binding site for residue MY6 B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TYR A 31 ? TYR A 27 . ? 1_555 ? 2 AC1 7 DA B 5 ? DA B 5 . ? 1_555 ? 3 AC1 7 NRI B 6 ? NRI B 6 . ? 1_555 ? 4 AC1 7 DA B 7 ? DA B 7 . ? 1_555 ? 5 AC1 7 DT C 6 ? DT C 6 . ? 1_555 ? 6 AC1 7 DC C 7 ? DC C 7 . ? 1_555 ? 7 AC1 7 DT C 8 ? DT C 8 . ? 1_555 ? # _atom_sites.entry_id 5KUB _atom_sites.fract_transf_matrix[1][1] 0.026008 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010793 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010683 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022560 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 VAL 3 -1 -1 VAL VAL A . n A 1 4 PRO 4 0 0 PRO PRO A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 HIS 6 2 2 HIS HIS A . n A 1 7 PRO 7 3 3 PRO PRO A . n A 1 8 PHE 8 4 4 PHE PHE A . n A 1 9 VAL 9 5 5 VAL VAL A . n A 1 10 LYS 10 6 6 LYS LYS A . n A 1 11 ALA 11 7 7 ALA ALA A . n A 1 12 LEU 12 8 8 LEU LEU A . n A 1 13 GLN 13 9 9 GLN GLN A . n A 1 14 GLU 14 10 10 GLU GLU A . n A 1 15 HIS 15 11 11 HIS HIS A . n A 1 16 PHE 16 12 12 PHE PHE A . n A 1 17 THR 17 13 13 THR THR A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 HIS 19 15 15 HIS HIS A . n A 1 20 GLN 20 16 16 GLN GLN A . n A 1 21 ASN 21 17 17 ASN ASN A . n A 1 22 PRO 22 18 18 PRO PRO A . n A 1 23 GLU 23 19 19 GLU GLU A . n A 1 24 LYS 24 20 20 LYS LYS A . n A 1 25 ALA 25 21 21 ALA ALA A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 PRO 27 23 23 PRO PRO A . n A 1 28 MET 28 24 24 MET MET A . n A 1 29 ALA 29 25 25 ALA ALA A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 TYR 31 27 27 TYR TYR A . n A 1 32 MET 32 28 28 MET MET A . n A 1 33 LYS 33 29 29 LYS LYS A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 HIS 35 31 31 HIS HIS A . n A 1 36 PHE 36 32 32 PHE PHE A . n A 1 37 LEU 37 33 33 LEU LEU A . n A 1 38 PHE 38 34 34 PHE PHE A . n A 1 39 LEU 39 35 35 LEU LEU A . n A 1 40 GLY 40 36 36 GLY GLY A . n A 1 41 ILE 41 37 37 ILE ILE A . n A 1 42 GLN 42 38 38 GLN GLN A . n A 1 43 THR 43 39 39 THR THR A . n A 1 44 PRO 44 40 40 PRO PRO A . n A 1 45 GLU 45 41 41 GLU GLU A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 ARG 47 43 43 ARG ARG A . n A 1 48 GLN 48 44 44 GLN GLN A . n A 1 49 LEU 49 45 45 LEU LEU A . n A 1 50 LEU 50 46 46 LEU LEU A . n A 1 51 LYS 51 47 47 LYS LYS A . n A 1 52 ASP 52 48 48 ASP ASP A . n A 1 53 ILE 53 49 49 ILE ILE A . n A 1 54 ILE 54 50 50 ILE ILE A . n A 1 55 GLN 55 51 51 GLN GLN A . n A 1 56 ILE 56 52 52 ILE ILE A . n A 1 57 HIS 57 53 53 HIS HIS A . n A 1 58 THR 58 54 54 THR THR A . n A 1 59 LEU 59 55 55 LEU LEU A . n A 1 60 PRO 60 56 56 PRO PRO A . n A 1 61 ASP 61 57 57 ASP ASP A . n A 1 62 GLN 62 58 58 GLN GLN A . n A 1 63 LYS 63 59 59 LYS LYS A . n A 1 64 ASP 64 60 60 ASP ASP A . n A 1 65 PHE 65 61 61 PHE PHE A . n A 1 66 GLN 66 62 62 GLN GLN A . n A 1 67 ILE 67 63 63 ILE ILE A . n A 1 68 ILE 68 64 64 ILE ILE A . n A 1 69 ILE 69 65 65 ILE ILE A . n A 1 70 ARG 70 66 66 ARG ARG A . n A 1 71 GLU 71 67 67 GLU GLU A . n A 1 72 LEU 72 68 68 LEU LEU A . n A 1 73 TRP 73 69 69 TRP TRP A . n A 1 74 ASP 74 70 70 ASP ASP A . n A 1 75 LEU 75 71 71 LEU LEU A . n A 1 76 PRO 76 72 72 PRO PRO A . n A 1 77 GLU 77 73 73 GLU GLU A . n A 1 78 ARG 78 74 74 ARG ARG A . n A 1 79 GLU 79 75 75 GLU GLU A . n A 1 80 PHE 80 76 76 PHE PHE A . n A 1 81 GLN 81 77 77 GLN GLN A . n A 1 82 ALA 82 78 78 ALA ALA A . n A 1 83 ALA 83 79 79 ALA ALA A . n A 1 84 ALA 84 80 80 ALA ALA A . n A 1 85 LEU 85 81 81 LEU LEU A . n A 1 86 ASP 86 82 82 ASP ASP A . n A 1 87 ILE 87 83 83 ILE ILE A . n A 1 88 MET 88 84 84 MET MET A . n A 1 89 GLN 89 85 85 GLN GLN A . n A 1 90 LYS 90 86 86 LYS LYS A . n A 1 91 TYR 91 87 87 TYR TYR A . n A 1 92 LYS 92 88 88 LYS LYS A . n A 1 93 LYS 93 89 89 LYS LYS A . n A 1 94 HIS 94 90 90 HIS HIS A . n A 1 95 ILE 95 91 91 ILE ILE A . n A 1 96 ASN 96 92 92 ASN ASN A . n A 1 97 GLU 97 93 93 GLU GLU A . n A 1 98 THR 98 94 94 THR THR A . n A 1 99 HIS 99 95 95 HIS HIS A . n A 1 100 ILE 100 96 96 ILE ILE A . n A 1 101 PRO 101 97 97 PRO PRO A . n A 1 102 PHE 102 98 98 PHE PHE A . n A 1 103 LEU 103 99 99 LEU LEU A . n A 1 104 GLU 104 100 100 GLU GLU A . n A 1 105 GLU 105 101 101 GLU GLU A . n A 1 106 LEU 106 102 102 LEU LEU A . n A 1 107 ILE 107 103 103 ILE ILE A . n A 1 108 VAL 108 104 104 VAL VAL A . n A 1 109 THR 109 105 105 THR THR A . n A 1 110 LYS 110 106 106 LYS LYS A . n A 1 111 SER 111 107 107 SER SER A . n A 1 112 TRP 112 108 108 TRP TRP A . n A 1 113 TRP 113 109 109 TRP TRP A . n A 1 114 ASP 114 110 110 ASP ASP A . n A 1 115 SER 115 111 111 SER SER A . n A 1 116 VAL 116 112 112 VAL VAL A . n A 1 117 ASP 117 113 113 ASP ASP A . n A 1 118 SER 118 114 114 SER SER A . n A 1 119 ILE 119 115 115 ILE ILE A . n A 1 120 VAL 120 116 116 VAL VAL A . n A 1 121 PRO 121 117 117 PRO PRO A . n A 1 122 THR 122 118 118 THR THR A . n A 1 123 PHE 123 119 119 PHE PHE A . n A 1 124 LEU 124 120 120 LEU LEU A . n A 1 125 GLY 125 121 121 GLY GLY A . n A 1 126 ASP 126 122 122 ASP ASP A . n A 1 127 ILE 127 123 123 ILE ILE A . n A 1 128 PHE 128 124 124 PHE PHE A . n A 1 129 LEU 129 125 125 LEU LEU A . n A 1 130 LYS 130 126 126 LYS LYS A . n A 1 131 HIS 131 127 127 HIS HIS A . n A 1 132 PRO 132 128 128 PRO PRO A . n A 1 133 GLU 133 129 129 GLU GLU A . n A 1 134 LEU 134 130 130 LEU LEU A . n A 1 135 ILE 135 131 131 ILE ILE A . n A 1 136 SER 136 132 132 SER SER A . n A 1 137 ALA 137 133 133 ALA ALA A . n A 1 138 TYR 138 134 134 TYR TYR A . n A 1 139 ILE 139 135 135 ILE ILE A . n A 1 140 PRO 140 136 136 PRO PRO A . n A 1 141 LYS 141 137 137 LYS LYS A . n A 1 142 TRP 142 138 138 TRP TRP A . n A 1 143 ILE 143 139 139 ILE ILE A . n A 1 144 ALA 144 140 140 ALA ALA A . n A 1 145 SER 145 141 141 SER SER A . n A 1 146 ASP 146 142 142 ASP ASP A . n A 1 147 ASN 147 143 143 ASN ASN A . n A 1 148 ILE 148 144 144 ILE ILE A . n A 1 149 TRP 149 145 145 TRP TRP A . n A 1 150 LEU 150 146 146 LEU LEU A . n A 1 151 GLN 151 147 147 GLN GLN A . n A 1 152 ARG 152 148 148 ARG ARG A . n A 1 153 ALA 153 149 149 ALA ALA A . n A 1 154 ALA 154 150 150 ALA ALA A . n A 1 155 ILE 155 151 151 ILE ILE A . n A 1 156 LEU 156 152 152 LEU LEU A . n A 1 157 PHE 157 153 153 PHE PHE A . n A 1 158 GLN 158 154 154 GLN GLN A . n A 1 159 LEU 159 155 155 LEU LEU A . n A 1 160 LYS 160 156 156 LYS LYS A . n A 1 161 TYR 161 157 157 TYR TYR A . n A 1 162 LYS 162 158 158 LYS LYS A . n A 1 163 GLN 163 159 159 GLN GLN A . n A 1 164 LYS 164 160 160 LYS LYS A . n A 1 165 MET 165 161 161 MET MET A . n A 1 166 ASP 166 162 162 ASP ASP A . n A 1 167 GLU 167 163 163 GLU GLU A . n A 1 168 GLU 168 164 164 GLU GLU A . n A 1 169 LEU 169 165 165 LEU LEU A . n A 1 170 LEU 170 166 166 LEU LEU A . n A 1 171 PHE 171 167 167 PHE PHE A . n A 1 172 TRP 172 168 168 TRP TRP A . n A 1 173 ILE 173 169 169 ILE ILE A . n A 1 174 ILE 174 170 170 ILE ILE A . n A 1 175 GLY 175 171 171 GLY GLY A . n A 1 176 GLN 176 172 172 GLN GLN A . n A 1 177 LEU 177 173 173 LEU LEU A . n A 1 178 HIS 178 174 174 HIS HIS A . n A 1 179 SER 179 175 175 SER SER A . n A 1 180 SER 180 176 176 SER SER A . n A 1 181 LYS 181 177 177 LYS LYS A . n A 1 182 GLU 182 178 178 GLU GLU A . n A 1 183 PHE 183 179 179 PHE PHE A . n A 1 184 PHE 184 180 180 PHE PHE A . n A 1 185 ILE 185 181 181 ILE ILE A . n A 1 186 GLN 186 182 182 GLN GLN A . n A 1 187 LYS 187 183 183 LYS LYS A . n A 1 188 ALA 188 184 184 ALA ALA A . n A 1 189 ILE 189 185 185 ILE ILE A . n A 1 190 GLY 190 186 186 GLY GLY A . n A 1 191 TRP 191 187 187 TRP TRP A . n A 1 192 VAL 192 188 188 VAL VAL A . n A 1 193 LEU 193 189 189 LEU LEU A . n A 1 194 ARG 194 190 190 ARG ARG A . n A 1 195 GLU 195 191 191 GLU GLU A . n A 1 196 TYR 196 192 192 TYR TYR A . n A 1 197 ALA 197 193 193 ALA ALA A . n A 1 198 LYS 198 194 194 LYS LYS A . n A 1 199 THR 199 195 195 THR THR A . n A 1 200 ASN 200 196 196 ASN ASN A . n A 1 201 PRO 201 197 197 PRO PRO A . n A 1 202 ASP 202 198 198 ASP ASP A . n A 1 203 VAL 203 199 199 VAL VAL A . n A 1 204 VAL 204 200 200 VAL VAL A . n A 1 205 TRP 205 201 201 TRP TRP A . n A 1 206 GLU 206 202 202 GLU GLU A . n A 1 207 TYR 207 203 203 TYR TYR A . n A 1 208 VAL 208 204 204 VAL VAL A . n A 1 209 GLN 209 205 205 GLN GLN A . n A 1 210 ASN 210 206 206 ASN ASN A . n A 1 211 ASN 211 207 207 ASN ASN A . n A 1 212 GLU 212 208 208 GLU GLU A . n A 1 213 LEU 213 209 209 LEU LEU A . n A 1 214 ALA 214 210 210 ALA ALA A . n A 1 215 PRO 215 211 211 PRO PRO A . n A 1 216 LEU 216 212 212 LEU LEU A . n A 1 217 SER 217 213 213 SER SER A . n A 1 218 LYS 218 214 214 LYS LYS A . n A 1 219 ARG 219 215 215 ARG ARG A . n A 1 220 GLU 220 216 216 GLU GLU A . n A 1 221 ALA 221 217 217 ALA ALA A . n A 1 222 ILE 222 218 218 ILE ILE A . n A 1 223 LYS 223 219 219 LYS LYS A . n A 1 224 HIS 224 220 220 HIS HIS A . n A 1 225 ILE 225 221 221 ILE ILE A . n A 1 226 LYS 226 222 222 LYS LYS A . n A 1 227 GLN 227 223 223 GLN GLN A . n A 1 228 ASN 228 224 224 ASN ASN A . n A 1 229 TYR 229 225 225 TYR TYR A . n A 1 230 GLY 230 226 226 GLY GLY A . n A 1 231 ILE 231 227 227 ILE ILE A . n A 1 232 ASN 232 228 228 ASN ASN A . n A 1 233 ASN 233 229 229 ASN ASN A . n A 1 234 GLU 234 230 ? ? ? A . n A 1 235 LYS 235 231 ? ? ? A . n A 1 236 ILE 236 232 ? ? ? A . n A 1 237 GLY 237 233 ? ? ? A . n A 1 238 GLU 238 234 ? ? ? A . n A 1 239 THR 239 235 ? ? ? A . n A 1 240 LEU 240 236 ? ? ? A . n A 1 241 SER 241 237 ? ? ? A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 NRI 6 6 6 NRI NRI B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DC 10 10 10 DC DC B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DG 12 12 12 DG DG B . n C 3 1 DC 1 1 1 DC DC C . n C 3 2 DG 2 2 2 DG DG C . n C 3 3 DG 3 3 3 DG DG C . n C 3 4 DA 4 4 4 DA DA C . n C 3 5 DC 5 5 5 DC DC C . n C 3 6 DT 6 6 6 DT DT C . n C 3 7 DC 7 7 7 DC DC C . n C 3 8 DT 8 8 8 DT DT C . n C 3 9 DC 9 9 9 DC DC C . n C 3 10 DG 10 10 10 DG DG C . n C 3 11 DG 11 11 11 DG DG C . n C 3 12 DG 12 12 12 DG DG C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MY6 1 101 1 MY6 UNK B . E 5 HOH 1 301 94 HOH HOH A . E 5 HOH 2 302 247 HOH HOH A . E 5 HOH 3 303 360 HOH HOH A . E 5 HOH 4 304 152 HOH HOH A . E 5 HOH 5 305 117 HOH HOH A . E 5 HOH 6 306 382 HOH HOH A . E 5 HOH 7 307 205 HOH HOH A . E 5 HOH 8 308 293 HOH HOH A . E 5 HOH 9 309 121 HOH HOH A . E 5 HOH 10 310 356 HOH HOH A . E 5 HOH 11 311 4 HOH HOH A . E 5 HOH 12 312 89 HOH HOH A . E 5 HOH 13 313 338 HOH HOH A . E 5 HOH 14 314 6 HOH HOH A . E 5 HOH 15 315 184 HOH HOH A . E 5 HOH 16 316 409 HOH HOH A . E 5 HOH 17 317 351 HOH HOH A . E 5 HOH 18 318 169 HOH HOH A . E 5 HOH 19 319 141 HOH HOH A . E 5 HOH 20 320 195 HOH HOH A . E 5 HOH 21 321 375 HOH HOH A . E 5 HOH 22 322 55 HOH HOH A . E 5 HOH 23 323 26 HOH HOH A . E 5 HOH 24 324 30 HOH HOH A . E 5 HOH 25 325 104 HOH HOH A . E 5 HOH 26 326 21 HOH HOH A . E 5 HOH 27 327 137 HOH HOH A . E 5 HOH 28 328 160 HOH HOH A . E 5 HOH 29 329 39 HOH HOH A . E 5 HOH 30 330 199 HOH HOH A . E 5 HOH 31 331 192 HOH HOH A . E 5 HOH 32 332 392 HOH HOH A . E 5 HOH 33 333 12 HOH HOH A . E 5 HOH 34 334 396 HOH HOH A . E 5 HOH 35 335 33 HOH HOH A . E 5 HOH 36 336 305 HOH HOH A . E 5 HOH 37 337 213 HOH HOH A . E 5 HOH 38 338 85 HOH HOH A . E 5 HOH 39 339 32 HOH HOH A . E 5 HOH 40 340 412 HOH HOH A . E 5 HOH 41 341 110 HOH HOH A . E 5 HOH 42 342 79 HOH HOH A . E 5 HOH 43 343 52 HOH HOH A . E 5 HOH 44 344 48 HOH HOH A . E 5 HOH 45 345 214 HOH HOH A . E 5 HOH 46 346 34 HOH HOH A . E 5 HOH 47 347 173 HOH HOH A . E 5 HOH 48 348 42 HOH HOH A . E 5 HOH 49 349 35 HOH HOH A . E 5 HOH 50 350 132 HOH HOH A . E 5 HOH 51 351 136 HOH HOH A . E 5 HOH 52 352 126 HOH HOH A . E 5 HOH 53 353 133 HOH HOH A . E 5 HOH 54 354 226 HOH HOH A . E 5 HOH 55 355 49 HOH HOH A . E 5 HOH 56 356 282 HOH HOH A . E 5 HOH 57 357 13 HOH HOH A . E 5 HOH 58 358 92 HOH HOH A . E 5 HOH 59 359 369 HOH HOH A . E 5 HOH 60 360 19 HOH HOH A . E 5 HOH 61 361 86 HOH HOH A . E 5 HOH 62 362 15 HOH HOH A . E 5 HOH 63 363 45 HOH HOH A . E 5 HOH 64 364 14 HOH HOH A . E 5 HOH 65 365 399 HOH HOH A . E 5 HOH 66 366 81 HOH HOH A . E 5 HOH 67 367 202 HOH HOH A . E 5 HOH 68 368 234 HOH HOH A . E 5 HOH 69 369 36 HOH HOH A . E 5 HOH 70 370 191 HOH HOH A . E 5 HOH 71 371 7 HOH HOH A . E 5 HOH 72 372 223 HOH HOH A . E 5 HOH 73 373 366 HOH HOH A . E 5 HOH 74 374 11 HOH HOH A . E 5 HOH 75 375 335 HOH HOH A . E 5 HOH 76 376 134 HOH HOH A . E 5 HOH 77 377 129 HOH HOH A . E 5 HOH 78 378 365 HOH HOH A . E 5 HOH 79 379 168 HOH HOH A . E 5 HOH 80 380 309 HOH HOH A . E 5 HOH 81 381 105 HOH HOH A . E 5 HOH 82 382 95 HOH HOH A . E 5 HOH 83 383 44 HOH HOH A . E 5 HOH 84 384 381 HOH HOH A . E 5 HOH 85 385 355 HOH HOH A . E 5 HOH 86 386 9 HOH HOH A . E 5 HOH 87 387 22 HOH HOH A . E 5 HOH 88 388 20 HOH HOH A . E 5 HOH 89 389 58 HOH HOH A . E 5 HOH 90 390 186 HOH HOH A . E 5 HOH 91 391 172 HOH HOH A . E 5 HOH 92 392 113 HOH HOH A . E 5 HOH 93 393 71 HOH HOH A . E 5 HOH 94 394 108 HOH HOH A . E 5 HOH 95 395 68 HOH HOH A . E 5 HOH 96 396 277 HOH HOH A . E 5 HOH 97 397 114 HOH HOH A . E 5 HOH 98 398 233 HOH HOH A . E 5 HOH 99 399 62 HOH HOH A . E 5 HOH 100 400 16 HOH HOH A . E 5 HOH 101 401 111 HOH HOH A . E 5 HOH 102 402 341 HOH HOH A . E 5 HOH 103 403 97 HOH HOH A . E 5 HOH 104 404 270 HOH HOH A . E 5 HOH 105 405 17 HOH HOH A . E 5 HOH 106 406 47 HOH HOH A . E 5 HOH 107 407 135 HOH HOH A . E 5 HOH 108 408 60 HOH HOH A . E 5 HOH 109 409 230 HOH HOH A . E 5 HOH 110 410 73 HOH HOH A . E 5 HOH 111 411 162 HOH HOH A . E 5 HOH 112 412 74 HOH HOH A . E 5 HOH 113 413 64 HOH HOH A . E 5 HOH 114 414 312 HOH HOH A . E 5 HOH 115 415 187 HOH HOH A . E 5 HOH 116 416 5 HOH HOH A . E 5 HOH 117 417 391 HOH HOH A . E 5 HOH 118 418 75 HOH HOH A . E 5 HOH 119 419 353 HOH HOH A . E 5 HOH 120 420 67 HOH HOH A . E 5 HOH 121 421 120 HOH HOH A . E 5 HOH 122 422 357 HOH HOH A . E 5 HOH 123 423 25 HOH HOH A . E 5 HOH 124 424 96 HOH HOH A . E 5 HOH 125 425 303 HOH HOH A . E 5 HOH 126 426 315 HOH HOH A . E 5 HOH 127 427 63 HOH HOH A . E 5 HOH 128 428 290 HOH HOH A . E 5 HOH 129 429 37 HOH HOH A . E 5 HOH 130 430 18 HOH HOH A . E 5 HOH 131 431 263 HOH HOH A . E 5 HOH 132 432 196 HOH HOH A . E 5 HOH 133 433 398 HOH HOH A . E 5 HOH 134 434 83 HOH HOH A . E 5 HOH 135 435 54 HOH HOH A . E 5 HOH 136 436 361 HOH HOH A . E 5 HOH 137 437 185 HOH HOH A . E 5 HOH 138 438 278 HOH HOH A . E 5 HOH 139 439 127 HOH HOH A . E 5 HOH 140 440 349 HOH HOH A . E 5 HOH 141 441 394 HOH HOH A . E 5 HOH 142 442 281 HOH HOH A . E 5 HOH 143 443 107 HOH HOH A . E 5 HOH 144 444 190 HOH HOH A . E 5 HOH 145 445 208 HOH HOH A . E 5 HOH 146 446 165 HOH HOH A . E 5 HOH 147 447 99 HOH HOH A . E 5 HOH 148 448 70 HOH HOH A . E 5 HOH 149 449 124 HOH HOH A . E 5 HOH 150 450 146 HOH HOH A . E 5 HOH 151 451 27 HOH HOH A . E 5 HOH 152 452 46 HOH HOH A . E 5 HOH 153 453 298 HOH HOH A . E 5 HOH 154 454 56 HOH HOH A . E 5 HOH 155 455 182 HOH HOH A . E 5 HOH 156 456 43 HOH HOH A . E 5 HOH 157 457 29 HOH HOH A . E 5 HOH 158 458 261 HOH HOH A . E 5 HOH 159 459 103 HOH HOH A . E 5 HOH 160 460 23 HOH HOH A . E 5 HOH 161 461 352 HOH HOH A . E 5 HOH 162 462 362 HOH HOH A . E 5 HOH 163 463 194 HOH HOH A . E 5 HOH 164 464 337 HOH HOH A . E 5 HOH 165 465 78 HOH HOH A . E 5 HOH 166 466 222 HOH HOH A . E 5 HOH 167 467 296 HOH HOH A . E 5 HOH 168 468 139 HOH HOH A . E 5 HOH 169 469 59 HOH HOH A . E 5 HOH 170 470 347 HOH HOH A . E 5 HOH 171 471 87 HOH HOH A . E 5 HOH 172 472 406 HOH HOH A . E 5 HOH 173 473 142 HOH HOH A . E 5 HOH 174 474 24 HOH HOH A . E 5 HOH 175 475 274 HOH HOH A . E 5 HOH 176 476 170 HOH HOH A . E 5 HOH 177 477 200 HOH HOH A . E 5 HOH 178 478 93 HOH HOH A . E 5 HOH 179 479 273 HOH HOH A . E 5 HOH 180 480 91 HOH HOH A . E 5 HOH 181 481 69 HOH HOH A . E 5 HOH 182 482 400 HOH HOH A . E 5 HOH 183 483 189 HOH HOH A . E 5 HOH 184 484 363 HOH HOH A . E 5 HOH 185 485 373 HOH HOH A . E 5 HOH 186 486 106 HOH HOH A . E 5 HOH 187 487 61 HOH HOH A . E 5 HOH 188 488 183 HOH HOH A . E 5 HOH 189 489 359 HOH HOH A . E 5 HOH 190 490 229 HOH HOH A . E 5 HOH 191 491 207 HOH HOH A . E 5 HOH 192 492 76 HOH HOH A . E 5 HOH 193 493 100 HOH HOH A . E 5 HOH 194 494 403 HOH HOH A . E 5 HOH 195 495 294 HOH HOH A . E 5 HOH 196 496 346 HOH HOH A . E 5 HOH 197 497 310 HOH HOH A . E 5 HOH 198 498 350 HOH HOH A . E 5 HOH 199 499 393 HOH HOH A . E 5 HOH 200 500 348 HOH HOH A . E 5 HOH 201 501 306 HOH HOH A . E 5 HOH 202 502 140 HOH HOH A . E 5 HOH 203 503 340 HOH HOH A . E 5 HOH 204 504 370 HOH HOH A . E 5 HOH 205 505 150 HOH HOH A . E 5 HOH 206 506 215 HOH HOH A . E 5 HOH 207 507 244 HOH HOH A . E 5 HOH 208 508 386 HOH HOH A . E 5 HOH 209 509 125 HOH HOH A . E 5 HOH 210 510 197 HOH HOH A . E 5 HOH 211 511 156 HOH HOH A . E 5 HOH 212 512 128 HOH HOH A . E 5 HOH 213 513 345 HOH HOH A . E 5 HOH 214 514 397 HOH HOH A . E 5 HOH 215 515 209 HOH HOH A . E 5 HOH 216 516 367 HOH HOH A . E 5 HOH 217 517 387 HOH HOH A . E 5 HOH 218 518 311 HOH HOH A . E 5 HOH 219 519 216 HOH HOH A . E 5 HOH 220 520 82 HOH HOH A . E 5 HOH 221 521 53 HOH HOH A . E 5 HOH 222 522 407 HOH HOH A . E 5 HOH 223 523 276 HOH HOH A . E 5 HOH 224 524 384 HOH HOH A . E 5 HOH 225 525 77 HOH HOH A . E 5 HOH 226 526 98 HOH HOH A . E 5 HOH 227 527 112 HOH HOH A . E 5 HOH 228 528 225 HOH HOH A . E 5 HOH 229 529 138 HOH HOH A . E 5 HOH 230 530 291 HOH HOH A . E 5 HOH 231 531 201 HOH HOH A . E 5 HOH 232 532 268 HOH HOH A . E 5 HOH 233 533 383 HOH HOH A . E 5 HOH 234 534 395 HOH HOH A . E 5 HOH 235 535 217 HOH HOH A . E 5 HOH 236 536 147 HOH HOH A . E 5 HOH 237 537 354 HOH HOH A . E 5 HOH 238 538 231 HOH HOH A . E 5 HOH 239 539 177 HOH HOH A . E 5 HOH 240 540 295 HOH HOH A . E 5 HOH 241 541 130 HOH HOH A . E 5 HOH 242 542 405 HOH HOH A . E 5 HOH 243 543 275 HOH HOH A . E 5 HOH 244 544 90 HOH HOH A . E 5 HOH 245 545 123 HOH HOH A . E 5 HOH 246 546 181 HOH HOH A . E 5 HOH 247 547 380 HOH HOH A . E 5 HOH 248 548 148 HOH HOH A . E 5 HOH 249 549 390 HOH HOH A . E 5 HOH 250 550 245 HOH HOH A . E 5 HOH 251 551 210 HOH HOH A . E 5 HOH 252 552 272 HOH HOH A . E 5 HOH 253 553 280 HOH HOH A . E 5 HOH 254 554 336 HOH HOH A . E 5 HOH 255 555 388 HOH HOH A . E 5 HOH 256 556 408 HOH HOH A . E 5 HOH 257 557 101 HOH HOH A . E 5 HOH 258 558 389 HOH HOH A . E 5 HOH 259 559 118 HOH HOH A . E 5 HOH 260 560 285 HOH HOH A . E 5 HOH 261 561 283 HOH HOH A . E 5 HOH 262 562 227 HOH HOH A . E 5 HOH 263 563 269 HOH HOH A . E 5 HOH 264 564 66 HOH HOH A . E 5 HOH 265 565 411 HOH HOH A . E 5 HOH 266 566 115 HOH HOH A . E 5 HOH 267 567 308 HOH HOH A . E 5 HOH 268 568 339 HOH HOH A . E 5 HOH 269 569 122 HOH HOH A . E 5 HOH 270 570 163 HOH HOH A . E 5 HOH 271 571 252 HOH HOH A . E 5 HOH 272 572 149 HOH HOH A . E 5 HOH 273 573 65 HOH HOH A . E 5 HOH 274 574 284 HOH HOH A . E 5 HOH 275 575 368 HOH HOH A . E 5 HOH 276 576 301 HOH HOH A . E 5 HOH 277 577 279 HOH HOH A . E 5 HOH 278 578 371 HOH HOH A . E 5 HOH 279 579 364 HOH HOH A . E 5 HOH 280 580 264 HOH HOH A . E 5 HOH 281 581 410 HOH HOH A . E 5 HOH 282 582 404 HOH HOH A . E 5 HOH 283 583 41 HOH HOH A . E 5 HOH 284 584 307 HOH HOH A . E 5 HOH 285 585 326 HOH HOH A . E 5 HOH 286 586 344 HOH HOH A . E 5 HOH 287 587 260 HOH HOH A . E 5 HOH 288 588 151 HOH HOH A . F 5 HOH 1 201 330 HOH HOH B . F 5 HOH 2 202 286 HOH HOH B . F 5 HOH 3 203 385 HOH HOH B . F 5 HOH 4 204 320 HOH HOH B . F 5 HOH 5 205 322 HOH HOH B . F 5 HOH 6 206 323 HOH HOH B . F 5 HOH 7 207 203 HOH HOH B . F 5 HOH 8 208 153 HOH HOH B . F 5 HOH 9 209 329 HOH HOH B . F 5 HOH 10 210 10 HOH HOH B . F 5 HOH 11 211 328 HOH HOH B . F 5 HOH 12 212 318 HOH HOH B . F 5 HOH 13 213 325 HOH HOH B . F 5 HOH 14 214 374 HOH HOH B . F 5 HOH 15 215 334 HOH HOH B . F 5 HOH 16 216 377 HOH HOH B . F 5 HOH 17 217 319 HOH HOH B . F 5 HOH 18 218 376 HOH HOH B . F 5 HOH 19 219 300 HOH HOH B . F 5 HOH 20 220 179 HOH HOH B . F 5 HOH 21 221 193 HOH HOH B . F 5 HOH 22 222 204 HOH HOH B . F 5 HOH 23 223 38 HOH HOH B . G 5 HOH 1 101 175 HOH HOH C . G 5 HOH 2 102 176 HOH HOH C . G 5 HOH 3 103 321 HOH HOH C . G 5 HOH 4 104 333 HOH HOH C . G 5 HOH 5 105 327 HOH HOH C . G 5 HOH 6 106 413 HOH HOH C . G 5 HOH 7 107 288 HOH HOH C . G 5 HOH 8 108 324 HOH HOH C . G 5 HOH 9 109 378 HOH HOH C . G 5 HOH 10 110 254 HOH HOH C . G 5 HOH 11 111 401 HOH HOH C . G 5 HOH 12 112 317 HOH HOH C . G 5 HOH 13 113 332 HOH HOH C . G 5 HOH 14 114 379 HOH HOH C . G 5 HOH 15 115 289 HOH HOH C . G 5 HOH 16 116 342 HOH HOH C . G 5 HOH 17 117 271 HOH HOH C . G 5 HOH 18 118 343 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3100 ? 1 MORE -21 ? 1 'SSA (A^2)' 15000 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-14 2 'Structure model' 1 1 2016-09-28 3 'Structure model' 1 2 2019-11-27 4 'Structure model' 1 3 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_struct_oper_list 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 45.9945 19.2511 65.7112 0.3338 0.1632 0.2389 -0.0052 0.0521 -0.0059 3.1532 6.4530 5.8444 -1.7462 1.2684 -5.0476 0.0955 -0.1829 0.0379 0.0848 0.4460 0.0369 0.3808 -0.7943 0.1162 'X-RAY DIFFRACTION' 2 ? refined 58.3422 5.2172 70.4614 0.1304 0.1542 0.1259 -0.0059 -0.0206 0.0047 5.8897 3.6914 8.3938 -1.1331 -4.4837 2.4643 -0.0566 0.1353 -0.0537 -0.3909 -0.0578 -0.0980 0.1605 0.0579 0.4137 'X-RAY DIFFRACTION' 3 ? refined 40.2685 11.0775 62.2015 0.1671 0.1669 0.1808 -0.0058 -0.0156 -0.0046 4.9105 5.5013 8.0395 -0.6870 0.8253 -4.2602 0.2075 0.1999 -0.3705 0.0836 0.0105 0.5872 -0.1292 -0.0151 -0.4174 'X-RAY DIFFRACTION' 4 ? refined 51.1268 18.6169 55.5249 0.2407 0.0979 0.1900 0.0134 0.0483 0.0028 5.2731 4.0964 8.3766 -0.9294 2.7899 -3.4114 -0.0062 -0.1222 0.1483 0.2031 0.4318 -0.0280 0.0812 -0.4345 0.1474 'X-RAY DIFFRACTION' 5 ? refined 55.6658 8.5345 47.0458 0.1893 0.1514 0.1643 -0.0144 0.0034 0.0071 0.6117 0.9681 3.9515 -0.3587 -0.9674 0.4481 0.0365 -0.0018 -0.0483 0.0698 0.0343 0.0067 -0.0786 -0.1326 -0.1607 'X-RAY DIFFRACTION' 6 ? refined 59.4014 -1.7225 43.1852 0.1449 0.1180 0.1024 -0.0360 0.0024 0.0210 4.9814 6.6560 3.7230 1.7146 1.9729 3.3535 0.0414 -0.0433 -0.0195 -0.0314 -0.1194 0.1910 -0.1743 0.0701 -0.0775 'X-RAY DIFFRACTION' 7 ? refined 69.8243 -3.7816 40.9834 0.1459 0.0915 0.1122 0.0100 0.0123 0.0039 4.6525 5.2268 3.2745 0.5428 -1.0544 0.2951 0.0837 -0.0035 -0.0700 0.1705 -0.0346 -0.1481 -0.2671 0.2041 0.2081 'X-RAY DIFFRACTION' 8 ? refined 65.5845 -15.0222 46.0772 0.1868 0.1221 0.1265 -0.0219 0.0175 0.0029 1.5084 6.2278 1.7115 0.1176 -0.1742 1.2454 -0.0754 0.0251 0.0430 -0.0248 -0.2176 0.0211 0.0497 0.2464 0.0250 'X-RAY DIFFRACTION' 9 ? refined 60.4155 -12.0707 63.2132 0.2105 0.3529 0.3323 0.0578 0.0446 0.1012 0.0928 3.2337 2.3924 -0.4404 -0.3383 0.4558 -0.3495 0.2505 -0.0401 -0.6362 -0.5549 -0.0561 0.1759 0.1461 -0.0973 'X-RAY DIFFRACTION' 10 ? refined 67.5006 -16.4306 63.5328 0.2381 0.6132 0.7065 0.0885 0.1269 0.2564 5.0819 2.4536 0.1994 -0.8166 -0.3410 0.6942 -0.2404 0.0987 -0.0263 0.4481 -0.6767 0.1081 0.1284 0.1417 0.0943 'X-RAY DIFFRACTION' 11 ? refined 49.0231 -7.5479 60.6606 0.2922 0.4144 0.4128 0.1553 -0.0335 -0.0103 3.8820 8.8316 9.1782 4.6363 0.8342 2.7025 -0.6710 0.4330 0.1769 -0.2382 -0.4921 1.2021 -0.5885 -1.0776 -1.0948 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A -1 A 15 ;chain 'A' and (resid -1 through 15 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 16 A 38 ;chain 'A' and (resid 16 through 38 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 39 A 57 ;chain 'A' and (resid 39 through 57 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 58 A 73 ;chain 'A' and (resid 58 through 73 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 74 A 143 ;chain 'A' and (resid 74 through 143 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 144 A 162 ;chain 'A' and (resid 144 through 162 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 163 A 178 ;chain 'A' and (resid 163 through 178 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 179 A 229 ;chain 'A' and (resid 179 through 229 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 B 1 B 12 ;chain 'B' and (resid 1 through 12 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 C 1 C 6 ;chain 'C' and (resid 1 through 6 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 C 7 C 12 ;chain 'C' and (resid 7 through 12 ) ; ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 447 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 479 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 477 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 517 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_455 _pdbx_validate_symm_contact.dist 2.16 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 2 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.374 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.045 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 110.37 108.30 2.07 0.30 N 2 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 111.52 108.30 3.22 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 54 ? ? 72.64 151.12 2 1 THR A 118 ? ? -94.29 -73.13 3 1 TYR A 134 ? ? -132.10 -46.20 4 1 LYS A 158 ? ? 51.52 -118.63 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 587 ? 5.90 . 2 1 O ? A HOH 588 ? 6.07 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLU 230 ? A GLU 234 4 1 Y 1 A LYS 231 ? A LYS 235 5 1 Y 1 A ILE 232 ? A ILE 236 6 1 Y 1 A GLY 233 ? A GLY 237 7 1 Y 1 A GLU 234 ? A GLU 238 8 1 Y 1 A THR 235 ? A THR 239 9 1 Y 1 A LEU 236 ? A LEU 240 10 1 Y 1 A SER 237 ? A SER 241 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 MY6 C1 C N N 379 MY6 N2 N Y N 380 MY6 C3 C Y N 381 MY6 N4 N Y N 382 MY6 C5 C Y N 383 MY6 C6 C N N 384 MY6 O7 O N N 385 MY6 N8 N N N 386 MY6 C9 C N N 387 MY6 N10 N N N 388 MY6 N11 N N N 389 MY6 C12 C Y N 390 MY6 H1 H N N 391 MY6 H1A H N N 392 MY6 H1B H N N 393 MY6 H3 H N N 394 MY6 HN8 H N N 395 MY6 HN10 H N N 396 MY6 HN1A H N N 397 NRI P P N N 398 NRI O1P O N N 399 NRI O2P O N N 400 NRI O3P O N N 401 NRI "O5'" O N N 402 NRI "C2'" C N N 403 NRI "C5'" C N N 404 NRI "C4'" C N R 405 NRI "C3'" C N R 406 NRI "C6'" C N N 407 NRI "N1'" N N N 408 NRI "O3'" O N N 409 NRI HOP2 H N N 410 NRI HOP3 H N N 411 NRI "H2'" H N N 412 NRI "H2''" H N N 413 NRI "H5'" H N N 414 NRI "H5''" H N N 415 NRI "H4'" H N N 416 NRI "H3'" H N N 417 NRI "H6'" H N N 418 NRI "H6''" H N N 419 NRI "HN1'" H N N 420 NRI "HO3'" H N N 421 PHE N N N N 422 PHE CA C N S 423 PHE C C N N 424 PHE O O N N 425 PHE CB C N N 426 PHE CG C Y N 427 PHE CD1 C Y N 428 PHE CD2 C Y N 429 PHE CE1 C Y N 430 PHE CE2 C Y N 431 PHE CZ C Y N 432 PHE OXT O N N 433 PHE H H N N 434 PHE H2 H N N 435 PHE HA H N N 436 PHE HB2 H N N 437 PHE HB3 H N N 438 PHE HD1 H N N 439 PHE HD2 H N N 440 PHE HE1 H N N 441 PHE HE2 H N N 442 PHE HZ H N N 443 PHE HXT H N N 444 PRO N N N N 445 PRO CA C N S 446 PRO C C N N 447 PRO O O N N 448 PRO CB C N N 449 PRO CG C N N 450 PRO CD C N N 451 PRO OXT O N N 452 PRO H H N N 453 PRO HA H N N 454 PRO HB2 H N N 455 PRO HB3 H N N 456 PRO HG2 H N N 457 PRO HG3 H N N 458 PRO HD2 H N N 459 PRO HD3 H N N 460 PRO HXT H N N 461 SER N N N N 462 SER CA C N S 463 SER C C N N 464 SER O O N N 465 SER CB C N N 466 SER OG O N N 467 SER OXT O N N 468 SER H H N N 469 SER H2 H N N 470 SER HA H N N 471 SER HB2 H N N 472 SER HB3 H N N 473 SER HG H N N 474 SER HXT H N N 475 THR N N N N 476 THR CA C N S 477 THR C C N N 478 THR O O N N 479 THR CB C N R 480 THR OG1 O N N 481 THR CG2 C N N 482 THR OXT O N N 483 THR H H N N 484 THR H2 H N N 485 THR HA H N N 486 THR HB H N N 487 THR HG1 H N N 488 THR HG21 H N N 489 THR HG22 H N N 490 THR HG23 H N N 491 THR HXT H N N 492 TRP N N N N 493 TRP CA C N S 494 TRP C C N N 495 TRP O O N N 496 TRP CB C N N 497 TRP CG C Y N 498 TRP CD1 C Y N 499 TRP CD2 C Y N 500 TRP NE1 N Y N 501 TRP CE2 C Y N 502 TRP CE3 C Y N 503 TRP CZ2 C Y N 504 TRP CZ3 C Y N 505 TRP CH2 C Y N 506 TRP OXT O N N 507 TRP H H N N 508 TRP H2 H N N 509 TRP HA H N N 510 TRP HB2 H N N 511 TRP HB3 H N N 512 TRP HD1 H N N 513 TRP HE1 H N N 514 TRP HE3 H N N 515 TRP HZ2 H N N 516 TRP HZ3 H N N 517 TRP HH2 H N N 518 TRP HXT H N N 519 TYR N N N N 520 TYR CA C N S 521 TYR C C N N 522 TYR O O N N 523 TYR CB C N N 524 TYR CG C Y N 525 TYR CD1 C Y N 526 TYR CD2 C Y N 527 TYR CE1 C Y N 528 TYR CE2 C Y N 529 TYR CZ C Y N 530 TYR OH O N N 531 TYR OXT O N N 532 TYR H H N N 533 TYR H2 H N N 534 TYR HA H N N 535 TYR HB2 H N N 536 TYR HB3 H N N 537 TYR HD1 H N N 538 TYR HD2 H N N 539 TYR HE1 H N N 540 TYR HE2 H N N 541 TYR HH H N N 542 TYR HXT H N N 543 VAL N N N N 544 VAL CA C N S 545 VAL C C N N 546 VAL O O N N 547 VAL CB C N N 548 VAL CG1 C N N 549 VAL CG2 C N N 550 VAL OXT O N N 551 VAL H H N N 552 VAL H2 H N N 553 VAL HA H N N 554 VAL HB H N N 555 VAL HG11 H N N 556 VAL HG12 H N N 557 VAL HG13 H N N 558 VAL HG21 H N N 559 VAL HG22 H N N 560 VAL HG23 H N N 561 VAL HXT H N N 562 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 MY6 N4 C1 sing N N 373 MY6 C1 H1 sing N N 374 MY6 C1 H1A sing N N 375 MY6 C1 H1B sing N N 376 MY6 C3 N2 doub Y N 377 MY6 N2 C12 sing Y N 378 MY6 C3 N4 sing Y N 379 MY6 C3 H3 sing N N 380 MY6 N4 C5 sing Y N 381 MY6 C12 C5 doub Y N 382 MY6 C5 C6 sing N N 383 MY6 C6 N8 sing N N 384 MY6 C6 O7 doub N N 385 MY6 C9 N8 sing N N 386 MY6 N8 HN8 sing N N 387 MY6 N11 C9 doub N N 388 MY6 C9 N10 sing N N 389 MY6 N10 HN10 sing N N 390 MY6 N10 HN1A sing N N 391 MY6 C12 N11 sing N N 392 NRI P O1P doub N N 393 NRI P O2P sing N N 394 NRI P O3P sing N N 395 NRI P "O5'" sing N N 396 NRI O2P HOP2 sing N N 397 NRI O3P HOP3 sing N N 398 NRI "O5'" "C5'" sing N N 399 NRI "C2'" "C3'" sing N N 400 NRI "C2'" "N1'" sing N N 401 NRI "C2'" "H2'" sing N N 402 NRI "C2'" "H2''" sing N N 403 NRI "C5'" "C4'" sing N N 404 NRI "C5'" "H5'" sing N N 405 NRI "C5'" "H5''" sing N N 406 NRI "C4'" "C3'" sing N N 407 NRI "C4'" "C6'" sing N N 408 NRI "C4'" "H4'" sing N N 409 NRI "C3'" "O3'" sing N N 410 NRI "C3'" "H3'" sing N N 411 NRI "C6'" "N1'" sing N N 412 NRI "C6'" "H6'" sing N N 413 NRI "C6'" "H6''" sing N N 414 NRI "N1'" "HN1'" sing N N 415 NRI "O3'" "HO3'" sing N N 416 PHE N CA sing N N 417 PHE N H sing N N 418 PHE N H2 sing N N 419 PHE CA C sing N N 420 PHE CA CB sing N N 421 PHE CA HA sing N N 422 PHE C O doub N N 423 PHE C OXT sing N N 424 PHE CB CG sing N N 425 PHE CB HB2 sing N N 426 PHE CB HB3 sing N N 427 PHE CG CD1 doub Y N 428 PHE CG CD2 sing Y N 429 PHE CD1 CE1 sing Y N 430 PHE CD1 HD1 sing N N 431 PHE CD2 CE2 doub Y N 432 PHE CD2 HD2 sing N N 433 PHE CE1 CZ doub Y N 434 PHE CE1 HE1 sing N N 435 PHE CE2 CZ sing Y N 436 PHE CE2 HE2 sing N N 437 PHE CZ HZ sing N N 438 PHE OXT HXT sing N N 439 PRO N CA sing N N 440 PRO N CD sing N N 441 PRO N H sing N N 442 PRO CA C sing N N 443 PRO CA CB sing N N 444 PRO CA HA sing N N 445 PRO C O doub N N 446 PRO C OXT sing N N 447 PRO CB CG sing N N 448 PRO CB HB2 sing N N 449 PRO CB HB3 sing N N 450 PRO CG CD sing N N 451 PRO CG HG2 sing N N 452 PRO CG HG3 sing N N 453 PRO CD HD2 sing N N 454 PRO CD HD3 sing N N 455 PRO OXT HXT sing N N 456 SER N CA sing N N 457 SER N H sing N N 458 SER N H2 sing N N 459 SER CA C sing N N 460 SER CA CB sing N N 461 SER CA HA sing N N 462 SER C O doub N N 463 SER C OXT sing N N 464 SER CB OG sing N N 465 SER CB HB2 sing N N 466 SER CB HB3 sing N N 467 SER OG HG sing N N 468 SER OXT HXT sing N N 469 THR N CA sing N N 470 THR N H sing N N 471 THR N H2 sing N N 472 THR CA C sing N N 473 THR CA CB sing N N 474 THR CA HA sing N N 475 THR C O doub N N 476 THR C OXT sing N N 477 THR CB OG1 sing N N 478 THR CB CG2 sing N N 479 THR CB HB sing N N 480 THR OG1 HG1 sing N N 481 THR CG2 HG21 sing N N 482 THR CG2 HG22 sing N N 483 THR CG2 HG23 sing N N 484 THR OXT HXT sing N N 485 TRP N CA sing N N 486 TRP N H sing N N 487 TRP N H2 sing N N 488 TRP CA C sing N N 489 TRP CA CB sing N N 490 TRP CA HA sing N N 491 TRP C O doub N N 492 TRP C OXT sing N N 493 TRP CB CG sing N N 494 TRP CB HB2 sing N N 495 TRP CB HB3 sing N N 496 TRP CG CD1 doub Y N 497 TRP CG CD2 sing Y N 498 TRP CD1 NE1 sing Y N 499 TRP CD1 HD1 sing N N 500 TRP CD2 CE2 doub Y N 501 TRP CD2 CE3 sing Y N 502 TRP NE1 CE2 sing Y N 503 TRP NE1 HE1 sing N N 504 TRP CE2 CZ2 sing Y N 505 TRP CE3 CZ3 doub Y N 506 TRP CE3 HE3 sing N N 507 TRP CZ2 CH2 doub Y N 508 TRP CZ2 HZ2 sing N N 509 TRP CZ3 CH2 sing Y N 510 TRP CZ3 HZ3 sing N N 511 TRP CH2 HH2 sing N N 512 TRP OXT HXT sing N N 513 TYR N CA sing N N 514 TYR N H sing N N 515 TYR N H2 sing N N 516 TYR CA C sing N N 517 TYR CA CB sing N N 518 TYR CA HA sing N N 519 TYR C O doub N N 520 TYR C OXT sing N N 521 TYR CB CG sing N N 522 TYR CB HB2 sing N N 523 TYR CB HB3 sing N N 524 TYR CG CD1 doub Y N 525 TYR CG CD2 sing Y N 526 TYR CD1 CE1 sing Y N 527 TYR CD1 HD1 sing N N 528 TYR CD2 CE2 doub Y N 529 TYR CD2 HD2 sing N N 530 TYR CE1 CZ doub Y N 531 TYR CE1 HE1 sing N N 532 TYR CE2 CZ sing Y N 533 TYR CE2 HE2 sing N N 534 TYR CZ OH sing N N 535 TYR OH HH sing N N 536 TYR OXT HXT sing N N 537 VAL N CA sing N N 538 VAL N H sing N N 539 VAL N H2 sing N N 540 VAL CA C sing N N 541 VAL CA CB sing N N 542 VAL CA HA sing N N 543 VAL C O doub N N 544 VAL C OXT sing N N 545 VAL CB CG1 sing N N 546 VAL CB CG2 sing N N 547 VAL CB HB sing N N 548 VAL CG1 HG11 sing N N 549 VAL CG1 HG12 sing N N 550 VAL CG1 HG13 sing N N 551 VAL CG2 HG21 sing N N 552 VAL CG2 HG22 sing N N 553 VAL CG2 HG23 sing N N 554 VAL OXT HXT sing N N 555 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5KUB 'double helix' 5KUB 'a-form double helix' 5KUB 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 -0.023 -0.146 0.150 -1.761 -12.108 0.647 1 B_DC1:DG12_C B 1 ? C 12 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 0.508 -0.321 0.272 -11.177 -9.279 2.245 2 B_DC2:DG11_C B 2 ? C 11 ? 19 1 1 B DC 3 1_555 C DG 10 1_555 0.147 -0.124 -0.028 -6.408 -1.441 2.170 3 B_DC3:DG10_C B 3 ? C 10 ? 19 1 1 B DG 4 1_555 C DC 9 1_555 -0.282 -0.162 -0.060 3.446 -6.894 0.811 4 B_DG4:DC9_C B 4 ? C 9 ? 19 1 1 B DA 5 1_555 C DT 8 1_555 0.121 -0.140 -0.007 -3.965 -9.141 2.204 5 B_DA5:DT8_C B 5 ? C 8 ? 20 1 1 B DA 7 1_555 C DT 6 1_555 0.265 -0.074 0.030 3.263 -18.838 -5.235 6 B_DA7:DT6_C B 7 ? C 6 ? 20 1 1 B DG 8 1_555 C DC 5 1_555 -0.391 -0.221 0.170 -8.952 -20.201 4.014 7 B_DG8:DC5_C B 8 ? C 5 ? 19 1 1 B DT 9 1_555 C DA 4 1_555 -0.266 -0.125 0.047 -6.489 -9.002 0.774 8 B_DT9:DA4_C B 9 ? C 4 ? 20 1 1 B DC 10 1_555 C DG 3 1_555 0.521 -0.107 -0.004 -2.409 -7.368 1.268 9 B_DC10:DG3_C B 10 ? C 3 ? 19 1 1 B DC 11 1_555 C DG 2 1_555 -0.080 -0.200 0.060 -2.186 -2.374 -0.100 10 B_DC11:DG2_C B 11 ? C 2 ? 19 1 1 B DG 12 1_555 C DC 1 1_555 0.257 -0.163 0.182 18.273 -1.926 -2.083 11 B_DG12:DC1_C B 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DC 2 1_555 C DG 11 1_555 0.347 -0.712 3.466 3.579 4.118 40.753 -1.485 -0.085 3.399 5.881 -5.111 41.101 1 BB_DC1DC2:DG11DG12_CC B 1 ? C 12 ? B 2 ? C 11 ? 1 B DC 2 1_555 C DG 11 1_555 B DC 3 1_555 C DG 10 1_555 -0.137 -0.641 3.151 5.377 5.274 28.077 -2.370 1.388 2.909 10.631 -10.837 29.050 2 BB_DC2DC3:DG10DG11_CC B 2 ? C 11 ? B 3 ? C 10 ? 1 B DC 3 1_555 C DG 10 1_555 B DG 4 1_555 C DC 9 1_555 0.011 0.064 3.055 0.778 8.293 31.186 -1.268 0.109 2.973 15.091 -1.416 32.252 3 BB_DC3DG4:DC9DG10_CC B 3 ? C 10 ? B 4 ? C 9 ? 1 B DG 4 1_555 C DC 9 1_555 B DA 5 1_555 C DT 8 1_555 -0.411 -0.270 3.370 -4.064 1.292 39.060 -0.561 0.111 3.383 1.926 6.056 39.283 4 BB_DG4DA5:DT8DC9_CC B 4 ? C 9 ? B 5 ? C 8 ? 1 B DA 5 1_555 C DT 8 1_555 B DA 7 1_555 C DT 6 1_555 0.241 -0.457 6.557 -0.707 11.510 59.185 -1.585 -0.310 6.375 11.534 0.709 60.198 5 BB_DA5DA7:DT6DT8_CC B 5 ? C 8 ? B 7 ? C 6 ? 1 B DA 7 1_555 C DT 6 1_555 B DG 8 1_555 C DC 5 1_555 0.834 -1.456 3.530 0.038 7.857 35.150 -3.510 -1.344 3.143 12.813 -0.061 35.990 6 BB_DA7DG8:DC5DT6_CC B 7 ? C 6 ? B 8 ? C 5 ? 1 B DG 8 1_555 C DC 5 1_555 B DT 9 1_555 C DA 4 1_555 -0.875 -1.037 3.185 1.896 4.114 31.010 -2.654 1.958 2.969 7.643 -3.523 31.331 7 BB_DG8DT9:DA4DC5_CC B 8 ? C 5 ? B 9 ? C 4 ? 1 B DT 9 1_555 C DA 4 1_555 B DC 10 1_555 C DG 3 1_555 0.029 -0.390 3.190 1.587 4.061 35.639 -1.196 0.172 3.127 6.604 -2.581 35.896 8 BB_DT9DC10:DG3DA4_CC B 9 ? C 4 ? B 10 ? C 3 ? 1 B DC 10 1_555 C DG 3 1_555 B DC 11 1_555 C DG 2 1_555 0.452 -0.406 3.342 1.204 3.439 31.513 -1.387 -0.602 3.295 6.305 -2.207 31.718 9 BB_DC10DC11:DG2DG3_CC B 10 ? C 3 ? B 11 ? C 2 ? 1 B DC 11 1_555 C DG 2 1_555 B DG 12 1_555 C DC 1 1_555 -0.464 -0.172 2.937 -4.397 4.695 30.540 -1.127 0.107 2.916 8.791 8.233 31.194 10 BB_DC11DG12:DC1DG2_CC B 11 ? C 2 ? B 12 ? C 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' MCB-1122098 1 'National Science Foundation (NSF, United States)' 'United States' MCB-1517695 2 'National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)' 'United States' 'R01 ES019625' 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-amino-7-methyl-1,7-dihydro-6H-purin-6-one MY6 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BVS _pdbx_initial_refinement_model.details 'PDB entry 3BVS' #