HEADER VIRAL PROTEIN 29-MAR-17 5NJU TITLE FLAVIVIRUS NS5 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: LOOP IS DISORDERED AND MISSING IN THE STRUCTURE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_TAXID: 64320; SOURCE 4 VARIANT: MR 766; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZIKA, FLAVIVIRUS, NS5, SAH, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.K.TALAPATRA,C.CHATRIN,F.KOZIELSKI REVDAT 4 17-JAN-24 5NJU 1 REMARK REVDAT 3 25-APR-18 5NJU 1 REMARK REVDAT 2 18-APR-18 5NJU 1 JRNL REVDAT 1 24-JAN-18 5NJU 0 JRNL AUTH C.CHATRIN,S.K.TALAPATRA,B.CANARD,F.KOZIELSKI JRNL TITL THE STRUCTURE OF THE BINARY METHYLTRANSFERASE-SAH COMPLEX JRNL TITL 2 FROM ZIKA VIRUS REVEALS A NOVEL CONFORMATION FOR THE JRNL TITL 3 MECHANISM OF MRNA CAPPING. JRNL REF ONCOTARGET V. 9 3160 2018 JRNL REFN ESSN 1949-2553 JRNL PMID 29423037 JRNL DOI 10.18632/ONCOTARGET.23223 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0566 - 5.0580 1.00 2809 172 0.1739 0.2115 REMARK 3 2 5.0580 - 4.0160 0.99 2623 138 0.1395 0.1554 REMARK 3 3 4.0160 - 3.5087 0.99 2557 151 0.1444 0.1998 REMARK 3 4 3.5087 - 3.1881 0.99 2585 119 0.1640 0.2219 REMARK 3 5 3.1881 - 2.9596 1.00 2556 145 0.1840 0.2573 REMARK 3 6 2.9596 - 2.7852 1.00 2559 124 0.1785 0.2675 REMARK 3 7 2.7852 - 2.6458 1.00 2535 138 0.1893 0.2531 REMARK 3 8 2.6458 - 2.5306 1.00 2550 139 0.1941 0.2706 REMARK 3 9 2.5306 - 2.4332 1.00 2514 134 0.1903 0.2623 REMARK 3 10 2.4332 - 2.3492 1.00 2554 129 0.1965 0.2473 REMARK 3 11 2.3492 - 2.2758 1.00 2484 153 0.2035 0.2722 REMARK 3 12 2.2758 - 2.2108 1.00 2549 107 0.2116 0.3118 REMARK 3 13 2.2108 - 2.1526 1.00 2520 128 0.2230 0.2905 REMARK 3 14 2.1526 - 2.1000 1.00 2509 129 0.2502 0.3231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4125 REMARK 3 ANGLE : 1.273 5585 REMARK 3 CHIRALITY : 0.067 604 REMARK 3 PLANARITY : 0.007 710 REMARK 3 DIHEDRAL : 27.109 2463 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5NJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1200004253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37913 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5KQR REMARK 200 REMARK 200 REMARK: SINGLE CRYSTALS - RHOMBOHEDRAL SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, PH 5.0, 2.0 M NACL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.27450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.69500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 204.41175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.69500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.13725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.69500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.69500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 204.41175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.69500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.69500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 68.13725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 136.27450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 38 REMARK 465 GLU B 39 REMARK 465 ALA B 40 REMARK 465 ARG B 41 REMARK 465 ARG B 42 REMARK 465 ALA B 43 REMARK 465 LEU B 44 REMARK 465 LYS B 45 REMARK 465 ASP B 46 REMARK 465 GLY B 47 REMARK 465 VAL B 48 REMARK 465 ALA B 49 REMARK 465 THR B 50 REMARK 465 GLY B 51 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 ARG B 37 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 155 CD OE1 OE2 REMARK 470 ARG B 175 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 161 O HOH B 1101 1.61 REMARK 500 N LEU B 165 O HOH B 1101 1.87 REMARK 500 O HOH B 1108 O HOH B 1260 2.00 REMARK 500 O ILE B 230 OG SER B 234 2.03 REMARK 500 O ASN A 17 O HOH A 1101 2.07 REMARK 500 NH2 ARG B 200 O HOH B 1102 2.08 REMARK 500 O HOH A 1321 O HOH A 1327 2.10 REMARK 500 O HOH B 1242 O HOH B 1261 2.11 REMARK 500 O HOH A 1252 O HOH A 1305 2.13 REMARK 500 O HOH B 1221 O HOH B 1235 2.16 REMARK 500 OE1 GLU B 254 O HOH B 1103 2.19 REMARK 500 OH TYR A 90 O HOH A 1102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1329 O HOH B 1254 6557 2.09 REMARK 500 O HOH A 1260 O HOH B 1106 7647 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 108 -80.89 -30.77 REMARK 500 GLN B 117 53.38 -116.83 REMARK 500 ASN B 228 60.96 -158.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 38 GLU A 39 -146.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1273 DISTANCE = 5.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 DBREF1 5NJU A 5 264 UNP A0A146CJG7_ZIKV DBREF2 5NJU A A0A146CJG7 2525 2784 DBREF1 5NJU B 5 270 UNP A0A146CJG7_ZIKV DBREF2 5NJU B A0A146CJG7 2525 2784 SEQRES 1 A 260 GLY GLU THR LEU GLY GLU LYS TRP LYS ALA ARG LEU ASN SEQRES 2 A 260 GLN MET SER ALA LEU GLU PHE TYR SER TYR LYS LYS SER SEQRES 3 A 260 GLY ILE THR GLU VAL CYS ARG GLU GLU ALA ARG ARG ALA SEQRES 4 A 260 LEU LYS ASP GLY VAL ALA THR GLY GLY HIS ALA VAL SER SEQRES 5 A 260 ARG GLY SER ALA LYS LEU ARG TRP LEU VAL ASP ARG GLY SEQRES 6 A 260 TYR LEU GLN PRO TYR GLY LYS VAL ILE ASP LEU GLY CYS SEQRES 7 A 260 GLY ARG GLY GLY TRP SER TYR TYR ALA ALA THR ILE ARG SEQRES 8 A 260 LYS VAL GLN GLU VAL LYS GLY TYR THR LYS GLY GLY PRO SEQRES 9 A 260 GLY HIS GLU GLU PRO VAL LEU VAL GLN SER TYR GLY TRP SEQRES 10 A 260 ASN ILE VAL ARG LEU LYS SER GLY VAL ASP VAL PHE HIS SEQRES 11 A 260 MET ALA ALA GLU PRO CYS ASP THR LEU LEU CYS ASP ILE SEQRES 12 A 260 GLY GLU SER SER SER SER PRO GLU VAL GLU GLU ALA ARG SEQRES 13 A 260 THR LEU ARG VAL LEU SER MET VAL GLY ASP TRP LEU GLU SEQRES 14 A 260 LYS ARG PRO GLY ALA PHE CYS ILE LYS VAL LEU CYS PRO SEQRES 15 A 260 TYR THR SER THR MET MET GLU THR LEU GLU ARG LEU GLN SEQRES 16 A 260 ARG ARG TYR GLY GLY GLY LEU VAL ARG VAL PRO LEU SER SEQRES 17 A 260 ARG ASN SER THR HIS GLU MET TYR TRP VAL SER GLY ALA SEQRES 18 A 260 LYS SER ASN THR ILE LYS SER VAL SER THR THR SER GLN SEQRES 19 A 260 LEU LEU LEU GLY ARG MET ASP GLY PRO ARG ARG PRO VAL SEQRES 20 A 260 LYS TYR GLU GLU ASP VAL ASN LEU GLY SER GLY THR ARG SEQRES 1 B 260 GLY GLU THR LEU GLY GLU LYS TRP LYS ALA ARG LEU ASN SEQRES 2 B 260 GLN MET SER ALA LEU GLU PHE TYR SER TYR LYS LYS SER SEQRES 3 B 260 GLY ILE THR GLU VAL CYS ARG GLU GLU ALA ARG ARG ALA SEQRES 4 B 260 LEU LYS ASP GLY VAL ALA THR GLY GLY HIS ALA VAL SER SEQRES 5 B 260 ARG GLY SER ALA LYS LEU ARG TRP LEU VAL ASP ARG GLY SEQRES 6 B 260 TYR LEU GLN PRO TYR GLY LYS VAL ILE ASP LEU GLY CYS SEQRES 7 B 260 GLY ARG GLY GLY TRP SER TYR TYR ALA ALA THR ILE ARG SEQRES 8 B 260 LYS VAL GLN GLU VAL LYS GLY TYR THR LYS GLY GLY PRO SEQRES 9 B 260 GLY HIS GLU GLU PRO VAL LEU VAL GLN SER TYR GLY TRP SEQRES 10 B 260 ASN ILE VAL ARG LEU LYS SER GLY VAL ASP VAL PHE HIS SEQRES 11 B 260 MET ALA ALA GLU PRO CYS ASP THR LEU LEU CYS ASP ILE SEQRES 12 B 260 GLY GLU SER SER SER SER PRO GLU VAL GLU GLU ALA ARG SEQRES 13 B 260 THR LEU ARG VAL LEU SER MET VAL GLY ASP TRP LEU GLU SEQRES 14 B 260 LYS ARG PRO GLY ALA PHE CYS ILE LYS VAL LEU CYS PRO SEQRES 15 B 260 TYR THR SER THR MET MET GLU THR LEU GLU ARG LEU GLN SEQRES 16 B 260 ARG ARG TYR GLY GLY GLY LEU VAL ARG VAL PRO LEU SER SEQRES 17 B 260 ARG ASN SER THR HIS GLU MET TYR TRP VAL SER GLY ALA SEQRES 18 B 260 LYS SER ASN THR ILE LYS SER VAL SER THR THR SER GLN SEQRES 19 B 260 LEU LEU LEU GLY ARG MET ASP GLY PRO ARG ARG PRO VAL SEQRES 20 B 260 LYS TYR GLU GLU ASP VAL ASN LEU GLY SER GLY THR ARG HET SAH A1001 26 HET MG A1002 1 HET SAH B1001 26 HET MG B1002 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM MG MAGNESIUM ION FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *426(H2 O) HELIX 1 AA1 THR A 7 MET A 19 1 13 HELIX 2 AA2 SER A 20 LYS A 29 1 10 HELIX 3 AA3 ALA A 40 GLY A 47 1 8 HELIX 4 AA4 ARG A 57 ARG A 68 1 12 HELIX 5 AA5 GLY A 85 ALA A 92 1 8 HELIX 6 AA6 GLY A 120 ASN A 122 5 3 HELIX 7 AA7 ASP A 131 MET A 135 5 5 HELIX 8 AA8 SER A 153 LYS A 174 1 22 HELIX 9 AA9 THR A 188 GLY A 203 1 16 HELIX 10 AB1 ASN A 228 ARG A 243 1 16 HELIX 11 AB2 THR B 7 MET B 19 1 13 HELIX 12 AB3 SER B 20 LYS B 29 1 10 HELIX 13 AB4 ARG B 57 ARG B 68 1 12 HELIX 14 AB5 GLY B 85 ALA B 92 1 8 HELIX 15 AB6 GLY B 120 ASN B 122 5 3 HELIX 16 AB7 ASP B 131 MET B 135 5 5 HELIX 17 AB8 SER B 153 GLU B 173 1 21 HELIX 18 AB9 THR B 188 GLY B 203 1 16 HELIX 19 AC1 ASN B 228 ARG B 243 1 16 SHEET 1 AA1 2 THR A 33 VAL A 35 0 SHEET 2 AA1 2 LYS A 252 GLU A 254 1 O GLU A 254 N GLU A 34 SHEET 1 AA2 7 VAL A 124 LYS A 127 0 SHEET 2 AA2 7 VAL A 97 TYR A 103 1 N GLY A 102 O ARG A 125 SHEET 3 AA2 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 AA2 7 THR A 142 CYS A 145 1 O LEU A 144 N ILE A 78 SHEET 5 AA2 7 ALA A 178 VAL A 183 1 O LYS A 182 N CYS A 145 SHEET 6 AA2 7 MET A 219 VAL A 222 -1 O MET A 219 N VAL A 183 SHEET 7 AA2 7 GLY A 205 VAL A 207 -1 N GLY A 205 O VAL A 222 SHEET 1 AA3 2 THR B 33 VAL B 35 0 SHEET 2 AA3 2 LYS B 252 GLU B 254 1 O GLU B 254 N GLU B 34 SHEET 1 AA4 7 VAL B 124 LYS B 127 0 SHEET 2 AA4 7 VAL B 97 TYR B 103 1 N GLY B 102 O ARG B 125 SHEET 3 AA4 7 GLY B 75 LEU B 80 1 N VAL B 77 O GLU B 99 SHEET 4 AA4 7 THR B 142 CYS B 145 1 O LEU B 144 N ILE B 78 SHEET 5 AA4 7 ALA B 178 VAL B 183 1 O LYS B 182 N CYS B 145 SHEET 6 AA4 7 MET B 219 VAL B 222 -1 O MET B 219 N VAL B 183 SHEET 7 AA4 7 GLY B 205 VAL B 207 -1 N GLY B 205 O VAL B 222 SSBOND 1 CYS A 36 CYS B 36 1555 6547 2.10 SITE 1 AC1 22 SER A 56 GLY A 58 GLY A 81 CYS A 82 SITE 2 AC1 22 GLY A 83 GLY A 86 TRP A 87 THR A 104 SITE 3 AC1 22 LYS A 105 HIS A 110 GLU A 111 VAL A 130 SITE 4 AC1 22 ASP A 131 VAL A 132 PHE A 133 ASP A 146 SITE 5 AC1 22 ILE A 147 HOH A1130 HOH A1155 HOH A1157 SITE 6 AC1 22 HOH A1164 HOH A1264 SITE 1 AC2 2 ARG A 37 VAL A 257 SITE 1 AC3 19 SER B 56 GLY B 58 GLY B 81 CYS B 82 SITE 2 AC3 19 GLY B 83 GLY B 85 GLY B 86 TRP B 87 SITE 3 AC3 19 THR B 104 LYS B 105 HIS B 110 VAL B 130 SITE 4 AC3 19 ASP B 131 VAL B 132 PHE B 133 ASP B 146 SITE 5 AC3 19 HOH B1130 HOH B1134 HOH B1192 SITE 1 AC4 7 HIS A 134 GLN B 199 GLY B 205 LEU B 206 SITE 2 AC4 7 ASN B 228 THR B 229 SER B 232 CRYST1 67.390 67.390 272.549 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014839 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003669 0.00000