data_5O69 # _entry.id 5O69 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5O69 WWPDB D_1200005263 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5O69 _pdbx_database_status.recvd_initial_deposition_date 2017-06-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, L.' 1 ? 'Wang, J.' 2 ? 'Lilley, D.M.J.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 24 _citation.language ? _citation.page_first 1407 _citation.page_last 1415.e2 _citation.title 'Structure of the Guanidine III Riboswitch.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2017.08.021 _citation.pdbx_database_id_PubMed 28988949 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Huang, L.' 1 primary 'Wang, J.' 2 primary 'Wilson, T.J.' 3 primary 'Lilley, D.M.J.' 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5O69 _cell.details ? _cell.formula_units_Z ? _cell.length_a 83.886 _cell.length_a_esd ? _cell.length_b 83.886 _cell.length_b_esd ? _cell.length_c 67.226 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5O69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (41-MER)' 13460.812 1 ? ? ? ? 2 polymer syn 'RNA (37-MER)' 13420.789 1 ? ? ? ? 3 non-polymer syn AGMATINE 130.191 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 18 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'C(CBV)GGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGG(CBV)GC' CCGGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGGCGC A ? 2 polyribonucleotide no yes 'C(CBV)GGACGAGGUGCGCCGUACCCGGUCACGACAAGACGG(CBV)GC' CCGGACGAGGUGCGCCGUACCCGGUCACGACAAGACGGCGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 CBV n 1 3 G n 1 4 G n 1 5 A n 1 6 C n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 G n 1 15 C n 1 16 C n 1 17 G n 1 18 U n 1 19 A n 1 20 C n 1 21 C n 1 22 C n 1 23 G n 1 24 G n 1 25 U n 1 26 C n 1 27 A n 1 28 G n 1 29 G n 1 30 A n 1 31 C n 1 32 A n 1 33 A n 1 34 G n 1 35 A n 1 36 C n 1 37 G n 1 38 G n 1 39 CBV n 1 40 G n 1 41 C n 2 1 C n 2 2 CBV n 2 3 G n 2 4 G n 2 5 A n 2 6 C n 2 7 G n 2 8 A n 2 9 G n 2 10 G n 2 11 U n 2 12 G n 2 13 C n 2 14 G n 2 15 C n 2 16 C n 2 17 G n 2 18 U n 2 19 A n 2 20 C n 2 21 C n 2 22 C n 2 23 G n 2 24 G n 2 25 U n 2 26 C n 2 27 A n 2 28 C n 2 29 G n 2 30 A n 2 31 C n 2 32 A n 2 33 A n 2 34 G n 2 35 A n 2 36 C n 2 37 G n 2 38 G n 2 39 CBV n 2 40 G n 2 41 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 41 'Thermobifida fusca' ? 2021 ? 2 1 sample 1 41 'Thermobifida fusca' ? 2021 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5O69 5O69 ? 1 ? 1 2 PDB 5O69 5O69 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5O69 A 1 ? 41 ? 5O69 1 ? 41 ? 1 41 2 2 5O69 B 1 ? 41 ? 5O69 1 ? 41 ? 1 41 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AG2 non-polymer . AGMATINE '(4-AMINOBUTYL)GUANIDINE' 'C5 H14 N4' 130.191 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5O69 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Magnesium acetate, 0.05 M MES pH 5.6, 20% v/v 2-Methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91972 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91972 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5O69 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.319 _reflns.d_resolution_low 49.34 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22683 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.4 _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 29.2 _reflns.pdbx_Rmerge_I_obs 0.1811 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.17 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.034 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.319 _reflns_shell.d_res_low 2.36 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 580 _reflns_shell.percent_possible_all 98.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 3.091 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 30.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.568 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.589 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5O69 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.319 _refine.ls_d_res_low 36.324 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22683 _refine.ls_number_reflns_R_free 1167 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.88 _refine.ls_percent_reflns_R_free 5.14 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2442 _refine.ls_R_factor_R_free 0.2701 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2427 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 38.54 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.53 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1681 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1709 _refine_hist.d_res_high 2.319 _refine_hist.d_res_low 36.324 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 1885 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.840 ? 2935 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.970 ? 886 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.039 ? 383 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 79 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.3189 2.4245 . . 105 2616 95.00 . . . 0.4256 . 0.4179 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4245 2.5522 . . 156 2671 98.00 . . . 0.4401 . 0.4297 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5522 2.7121 . . 154 2691 99.00 . . . 0.4548 . 0.3971 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7121 2.9214 . . 146 2677 99.00 . . . 0.4834 . 0.3622 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9214 3.2153 . . 166 2711 100.00 . . . 0.2748 . 0.2662 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2153 3.6801 . . 176 2695 100.00 . . . 0.2377 . 0.1963 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6801 4.6351 . . 119 2746 100.00 . . . 0.1984 . 0.1920 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.6351 36.3282 . . 145 2709 100.00 . . . 0.2040 . 0.1837 . . . . . . . . . . # _struct.entry_id 5O69 _struct.title 'The structure of the thermobifida fusca guanidine III riboswitch with agmatine.' _struct.pdbx_descriptor ;RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5O69 _struct_keywords.text 'guanidine III riboswitch, stem-loop, pseudoknot, RNA, gene regulation' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A C 1 "O3'" ? ? ? 1_555 A CBV 2 P ? ? A C 1 A CBV 2 1_555 ? ? ? ? ? ? ? 1.610 ? covale2 covale one ? A CBV 2 "O3'" ? ? ? 1_555 A G 3 P ? ? A CBV 2 A G 3 1_555 ? ? ? ? ? ? ? 1.600 ? metalc1 metalc ? ? A A 30 OP2 ? ? ? 1_555 D MG . MG ? ? A A 30 A MG 102 1_555 ? ? ? ? ? ? ? 2.104 ? metalc2 metalc ? ? A C 31 OP2 ? ? ? 1_555 D MG . MG ? ? A C 31 A MG 102 1_555 ? ? ? ? ? ? ? 2.049 ? covale3 covale both ? A G 38 "O3'" ? ? ? 1_555 A CBV 39 P ? ? A G 38 A CBV 39 1_555 ? ? ? ? ? ? ? 1.612 ? covale4 covale one ? A CBV 39 "O3'" ? ? ? 1_555 A G 40 P ? ? A CBV 39 A G 40 1_555 ? ? ? ? ? ? ? 1.596 ? covale5 covale both ? B C 1 "O3'" ? ? ? 1_555 B CBV 2 P ? ? B C 1 B CBV 2 1_555 ? ? ? ? ? ? ? 1.610 ? covale6 covale one ? B CBV 2 "O3'" ? ? ? 1_555 B G 3 P ? ? B CBV 2 B G 3 1_555 ? ? ? ? ? ? ? 1.604 ? covale7 covale both ? B G 38 "O3'" ? ? ? 1_555 B CBV 39 P ? ? B G 38 B CBV 39 1_555 ? ? ? ? ? ? ? 1.611 ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 1 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A CBV 2 N3 ? ? ? 1_555 A G 23 N1 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A CBV 2 N4 ? ? ? 1_555 A G 23 O6 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A CBV 2 O2 ? ? ? 1_555 A G 23 N2 ? ? A CBV 2 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 3 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 4 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A A 19 N6 ? ? A A 5 A A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A A 19 N7 ? ? A A 5 A A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A U 18 O4 ? ? A C 6 A U 18 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? hydrog16 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 34 N2 ? ? A C 6 A G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 34 N1 ? ? A C 6 A G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog18 hydrog ? ? A G 7 N1 ? ? ? 1_555 A A 35 N7 ? ? A G 7 A A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A A 35 N6 ? ? A G 7 A A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? hydrog20 hydrog ? ? A A 8 N1 ? ? ? 1_555 A C 36 N4 ? ? A A 8 A C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog21 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 9 A C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 37 O6 ? ? A G 9 A G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 37 N7 ? ? A G 9 A G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 10 A C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 38 O6 ? ? A G 10 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 38 N7 ? ? A G 10 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A G 14 O6 ? ? A U 11 A G 14 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A CBV 39 N4 ? ? A U 11 A CBV 39 1_555 ? ? ? ? ? ? 'U-CBV MISPAIR' ? ? hydrog29 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 12 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 13 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A G 14 N1 ? ? ? 1_555 A CBV 39 N3 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 14 N2 ? ? ? 1_555 A CBV 39 O2 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A G 14 O6 ? ? ? 1_555 A CBV 39 N4 ? ? A G 14 A CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 15 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 16 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 17 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 18 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 18 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A A 19 N6 ? ? ? 1_555 A G 34 N3 ? ? A A 19 A G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog50 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 20 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 27 N3 ? ? A G 23 A A 27 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog54 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 32 N1 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog55 hydrog ? ? A G 29 N3 ? ? ? 1_555 A A 32 N6 ? ? A G 29 A A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog56 hydrog ? ? B C 1 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? B C 1 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? B C 1 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 1 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? B CBV 2 N3 ? ? ? 1_555 B G 23 N1 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? B CBV 2 N4 ? ? ? 1_555 B G 23 O6 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? B CBV 2 O2 ? ? ? 1_555 B G 23 N2 ? ? B CBV 2 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 22 N3 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 22 O2 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 22 N4 ? ? B G 3 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 4 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? B A 5 N1 ? ? ? 1_555 B A 19 N6 ? ? B A 5 B A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog69 hydrog ? ? B A 5 N6 ? ? ? 1_555 B A 19 N7 ? ? B A 5 B A 19 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? hydrog70 hydrog ? ? B C 6 N4 ? ? ? 1_555 B U 18 O4 ? ? B C 6 B U 18 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? hydrog71 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 34 N2 ? ? B C 6 B G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog72 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 34 N1 ? ? B C 6 B G 34 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog73 hydrog ? ? B G 7 N1 ? ? ? 1_555 B A 35 N7 ? ? B G 7 B A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? hydrog74 hydrog ? ? B G 7 O6 ? ? ? 1_555 B A 35 N6 ? ? B G 7 B A 35 1_555 ? ? ? ? ? ? TYPE_9_PAIR ? ? hydrog75 hydrog ? ? B A 8 N1 ? ? ? 1_555 B C 36 N4 ? ? B A 8 B C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog76 hydrog ? ? B A 8 N6 ? ? ? 1_555 B G 37 O6 ? ? B A 8 B G 37 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog77 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 9 B C 16 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog78 hydrog ? ? B G 9 N1 ? ? ? 1_555 B G 37 O6 ? ? B G 9 B G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog79 hydrog ? ? B G 9 N2 ? ? ? 1_555 B G 37 N7 ? ? B G 9 B G 37 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog80 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 10 B C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog81 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 38 O6 ? ? B G 10 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog82 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 38 N7 ? ? B G 10 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog83 hydrog ? ? B U 11 O4 ? ? ? 1_555 B CBV 39 N4 ? ? B U 11 B CBV 39 1_555 ? ? ? ? ? ? 'U-CBV MISPAIR' ? ? hydrog84 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog85 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog86 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 12 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog87 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog88 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog89 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 13 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog90 hydrog ? ? B G 14 N1 ? ? ? 1_555 B CBV 39 N3 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog91 hydrog ? ? B G 14 N2 ? ? ? 1_555 B CBV 39 O2 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog92 hydrog ? ? B G 14 O6 ? ? ? 1_555 B CBV 39 N4 ? ? B G 14 B CBV 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog93 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 38 N1 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog94 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 38 O6 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog95 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 38 N2 ? ? B C 15 B G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog96 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog97 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog98 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 16 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog99 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 36 N3 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog100 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 36 O2 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog101 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 36 N4 ? ? B G 17 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog102 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 35 N1 ? ? B U 18 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog103 hydrog ? ? B U 18 O4 ? ? ? 1_555 B A 35 N6 ? ? B U 18 B A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog104 hydrog ? ? B A 19 N6 ? ? ? 1_555 B G 34 N3 ? ? B A 19 B G 34 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog105 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog106 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog107 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 20 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog108 hydrog ? ? B G 23 N2 ? ? ? 1_555 B A 27 N3 ? ? B G 23 B A 27 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog109 hydrog ? ? B G 29 N2 ? ? ? 1_555 B A 32 N1 ? ? B G 29 B A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog110 hydrog ? ? B G 29 N3 ? ? ? 1_555 B A 32 N6 ? ? B G 29 B A 32 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AG2 101 ? 8 'binding site for residue AG2 A 101' AC2 Software A MG 102 ? 2 'binding site for residue MG A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 C A 6 ? C A 6 . ? 1_555 ? 2 AC1 8 G A 7 ? G A 7 . ? 1_555 ? 3 AC1 8 A A 8 ? A A 8 . ? 1_555 ? 4 AC1 8 G A 9 ? G A 9 . ? 1_555 ? 5 AC1 8 C A 16 ? C A 16 . ? 1_555 ? 6 AC1 8 G A 17 ? G A 17 . ? 1_555 ? 7 AC1 8 U A 18 ? U A 18 . ? 1_555 ? 8 AC1 8 A A 35 ? A A 35 . ? 1_555 ? 9 AC2 2 A A 30 ? A A 30 . ? 1_555 ? 10 AC2 2 C A 31 ? C A 31 . ? 1_555 ? # _atom_sites.entry_id 5O69 _atom_sites.fract_transf_matrix[1][1] 0.011921 _atom_sites.fract_transf_matrix[1][2] 0.006883 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013765 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014875 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C H MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 CBV 2 2 2 CBV CBV A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 A 19 19 19 A A A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 A 32 32 32 A A A . n A 1 33 A 33 33 33 A A A . n A 1 34 G 34 34 34 G G A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 CBV 39 39 39 CBV CBV A . n A 1 40 G 40 40 40 G G A . n A 1 41 C 41 41 41 C C A . n B 2 1 C 1 1 1 C C B . n B 2 2 CBV 2 2 2 CBV CBV B . n B 2 3 G 3 3 3 G G B . n B 2 4 G 4 4 4 G G B . n B 2 5 A 5 5 5 A A B . n B 2 6 C 6 6 6 C C B . n B 2 7 G 7 7 7 G G B . n B 2 8 A 8 8 8 A A B . n B 2 9 G 9 9 9 G G B . n B 2 10 G 10 10 10 G G B . n B 2 11 U 11 11 11 U U B . n B 2 12 G 12 12 12 G G B . n B 2 13 C 13 13 13 C C B . n B 2 14 G 14 14 14 G G B . n B 2 15 C 15 15 15 C C B . n B 2 16 C 16 16 16 C C B . n B 2 17 G 17 17 17 G G B . n B 2 18 U 18 18 18 U U B . n B 2 19 A 19 19 19 A A B . n B 2 20 C 20 20 20 C C B . n B 2 21 C 21 21 21 C C B . n B 2 22 C 22 22 22 C C B . n B 2 23 G 23 23 23 G G B . n B 2 24 G 24 24 24 G G B . n B 2 25 U 25 25 ? ? ? B . n B 2 26 C 26 26 ? ? ? B . n B 2 27 A 27 27 27 A A B . n B 2 28 C 28 28 ? ? ? B . n B 2 29 G 29 29 29 G G B . n B 2 30 A 30 30 ? ? ? B . n B 2 31 C 31 31 31 C C B . n B 2 32 A 32 32 32 A A B . n B 2 33 A 33 33 33 A A B . n B 2 34 G 34 34 34 G G B . n B 2 35 A 35 35 35 A A B . n B 2 36 C 36 36 36 C C B . n B 2 37 G 37 37 37 G G B . n B 2 38 G 38 38 38 G G B . n B 2 39 CBV 39 39 39 CBV CBV B . n B 2 40 G 40 40 40 G G B . n B 2 41 C 41 41 41 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AG2 1 101 1 AG2 AG2 A . D 4 MG 1 102 1 MG MG A . E 5 HOH 1 201 3 HOH HOH A . E 5 HOH 2 202 2 HOH HOH A . E 5 HOH 3 203 6 HOH HOH A . E 5 HOH 4 204 18 HOH HOH A . E 5 HOH 5 205 9 HOH HOH A . E 5 HOH 6 206 4 HOH HOH A . E 5 HOH 7 207 17 HOH HOH A . E 5 HOH 8 208 1 HOH HOH A . E 5 HOH 9 209 11 HOH HOH A . E 5 HOH 10 210 15 HOH HOH A . F 5 HOH 1 101 14 HOH HOH B . F 5 HOH 2 102 12 HOH HOH B . F 5 HOH 3 103 5 HOH HOH B . F 5 HOH 4 104 10 HOH HOH B . F 5 HOH 5 105 13 HOH HOH B . F 5 HOH 6 106 16 HOH HOH B . F 5 HOH 7 107 7 HOH HOH B . F 5 HOH 8 108 8 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E 2 1 B,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 208 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id A _pdbx_struct_conn_angle.ptnr1_label_seq_id 30 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id A _pdbx_struct_conn_angle.ptnr1_auth_seq_id 30 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id D _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 102 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id C _pdbx_struct_conn_angle.ptnr3_label_seq_id 31 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id C _pdbx_struct_conn_angle.ptnr3_auth_seq_id 31 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 76.9 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-18 2 'Structure model' 1 1 2017-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 1.2065 51.1092 31.9889 0.3821 0.3644 0.2626 -0.0054 -0.0273 0.0234 1.3916 7.9270 1.8681 1.4366 -0.6127 0.5556 0.1450 -0.2423 -0.0106 0.3192 -0.3506 -0.3620 0.0890 -0.0087 0.2480 'X-RAY DIFFRACTION' 2 ? refined 8.7760 62.1088 33.4504 0.4418 0.3873 0.3149 -0.0111 -0.0011 -0.0181 0.9728 4.1594 1.3022 0.0294 0.3087 -0.1632 0.1168 -0.0324 0.1775 -0.3004 -0.2491 -0.8539 -0.2470 0.0853 0.0275 'X-RAY DIFFRACTION' 3 ? refined 2.6406 69.5642 28.6234 0.5415 0.3181 0.3202 -0.0189 0.0343 0.1136 1.1728 0.1691 2.9198 -0.2205 1.7358 -0.3796 0.1483 -0.3135 -0.1544 -0.1894 0.1610 -0.5680 -0.7583 0.0503 -0.2233 'X-RAY DIFFRACTION' 4 ? refined 4.6192 48.3319 31.1911 0.4354 0.3182 0.1651 -0.0042 0.0224 -0.0488 2.3701 3.4522 2.2650 0.3942 -0.0034 -1.9517 0.1279 0.0475 -0.3328 -0.1145 -0.4179 -0.3821 0.1324 0.1032 0.1589 'X-RAY DIFFRACTION' 5 ? refined 21.4591 67.6407 4.1194 1.1815 0.9017 1.2880 0.4854 0.1989 -0.2202 5.0072 2.1394 1.1568 -2.7244 0.3911 -0.8784 0.1170 0.8283 0.2204 -0.0626 0.2189 -0.1931 -0.4821 -0.1546 -0.4305 'X-RAY DIFFRACTION' 6 ? refined 35.0447 49.4961 12.8990 0.8025 0.4007 0.6873 0.1408 -0.0625 -0.0206 4.9235 2.8269 5.2070 -1.4610 -0.6850 2.2191 0.0193 -0.3866 1.4496 0.2629 -0.1941 -0.4377 -0.9134 -0.4656 -0.0398 'X-RAY DIFFRACTION' 7 ? refined 25.5560 67.1220 10.4292 1.1257 0.5339 1.4645 0.5425 -0.0184 -0.3750 1.1433 3.2355 4.5970 -1.1448 0.3933 0.0563 0.1626 0.0854 1.8519 1.5390 0.1133 -0.0000 -0.0469 0.6866 -0.5013 'X-RAY DIFFRACTION' 8 ? refined 27.9420 50.7579 12.4665 0.8105 0.5959 0.6217 0.2390 -0.1830 -0.1717 4.4624 6.5805 2.1854 1.5888 -0.1063 1.6576 -0.2435 -0.7509 0.6983 0.6786 -0.4835 0.4974 -0.3831 -0.4196 1.0291 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 16 through 25 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 26 through 30 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 31 through 41 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 5 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 6 through 15 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 16 through 32 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 33 through 41 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_2219: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" B C 1 ? ? O3P B CBV 2 ? ? 0.45 2 1 "O3'" A C 1 ? ? O3P A CBV 2 ? ? 0.46 3 1 H21 B G 4 ? ? O2 B C 21 ? ? 1.45 4 1 "HO2'" B A 33 ? ? "O5'" B G 34 ? ? 1.52 5 1 "HO2'" A U 18 ? ? O A HOH 201 ? ? 1.58 6 1 "O2'" A U 18 ? ? O A HOH 201 ? ? 1.93 7 1 O B HOH 106 ? ? O B HOH 107 ? ? 2.10 8 1 "O3'" B G 24 ? ? O B HOH 101 ? ? 2.18 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 CBV _pdbx_validate_polymer_linkage.auth_seq_id_1 39 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 G _pdbx_validate_polymer_linkage.auth_seq_id_2 40 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 4.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B A 27 ? P ? B A 27 P 2 1 Y 1 B A 27 ? OP1 ? B A 27 OP1 3 1 Y 1 B A 27 ? OP2 ? B A 27 OP2 4 1 Y 1 B A 27 ? "O5'" ? B A 27 "O5'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B U 25 ? B U 25 2 1 Y 1 B C 26 ? B C 26 3 1 Y 1 B C 28 ? B C 28 4 1 Y 1 B A 30 ? B A 30 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5O69 'double helix' 5O69 'a-form double helix' 5O69 'bulge loop' 5O69 'mismatched base pair' 5O69 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 24 1_555 0.118 -0.179 0.041 -0.885 -5.510 -3.136 1 A_C1:G24_A A 1 ? A 24 ? 19 1 1 A CBV 2 1_555 A G 23 1_555 0.589 0.008 0.303 -0.297 -13.710 3.430 2 A_CBV2:G23_A A 2 ? A 23 ? 19 1 1 A G 3 1_555 A C 22 1_555 -0.177 -0.117 0.187 2.256 -1.449 0.078 3 A_G3:C22_A A 3 ? A 22 ? 19 1 1 A G 4 1_555 A C 21 1_555 -0.211 -0.138 0.103 4.705 -2.731 2.532 4 A_G4:C21_A A 4 ? A 21 ? 19 1 1 A G 29 1_555 A C 20 1_555 -0.161 -0.128 -0.017 -2.333 -7.168 -0.691 5 A_G29:C20_A A 29 ? A 20 ? 19 1 1 A A 5 1_555 A A 19 1_555 4.115 1.556 -1.069 -0.898 -25.710 -107.083 6 A_A5:A19_A A 5 ? A 19 ? 5 4 1 A A 35 1_555 A U 18 1_555 0.054 -0.127 0.346 9.691 -7.831 -1.548 7 A_A35:U18_A A 35 ? A 18 ? 20 1 1 A G 12 1_555 A C 41 1_555 -0.134 -0.158 0.553 7.979 -12.745 -0.702 8 A_G12:C41_A A 12 ? A 41 ? 19 1 1 A C 13 1_555 A G 40 1_555 0.062 -0.157 0.275 0.724 -11.225 -0.075 9 A_C13:G40_A A 13 ? A 40 ? 19 1 1 A G 14 1_555 A CBV 39 1_555 0.389 -0.012 -0.157 1.113 -4.400 -0.289 10 A_G14:CBV39_A A 14 ? A 39 ? 19 1 1 A C 15 1_555 A G 38 1_555 0.203 -0.174 -0.071 -0.476 -0.812 -0.642 11 A_C15:G38_A A 15 ? A 38 ? 19 1 1 A C 16 1_555 A G 37 1_555 0.090 -0.044 -0.229 2.191 -1.963 1.722 12 A_C16:G37_A A 16 ? A 37 ? 19 1 1 A G 17 1_555 A C 36 1_555 -0.209 -0.267 0.388 -5.074 -10.540 -1.659 13 A_G17:C36_A A 17 ? A 36 ? 19 1 1 B C 1 1_555 B G 24 1_555 0.145 -0.113 0.000 -4.112 -4.406 0.370 14 B_C1:G24_B B 1 ? B 24 ? 19 1 1 B CBV 2 1_555 B G 23 1_555 1.159 -0.321 0.234 2.667 -10.023 4.761 15 B_CBV2:G23_B B 2 ? B 23 ? 19 1 1 B G 3 1_555 B C 22 1_555 -0.179 -0.187 0.116 -0.881 -0.338 0.928 16 B_G3:C22_B B 3 ? B 22 ? 19 1 1 B G 4 1_555 B C 21 1_555 0.036 -0.452 -0.069 4.543 -2.478 2.218 17 B_G4:C21_B B 4 ? B 21 ? 19 1 1 B G 29 1_555 B C 20 1_555 0.320 -0.152 -0.261 -8.273 -3.222 1.081 18 B_G29:C20_B B 29 ? B 20 ? 19 1 1 B A 5 1_555 B A 19 1_555 3.729 1.481 -1.582 -8.453 -19.345 -100.093 19 B_A5:A19_B B 5 ? B 19 ? 5 4 1 B A 35 1_555 B U 18 1_555 0.059 -0.210 0.151 3.712 -7.224 -2.430 20 B_A35:U18_B B 35 ? B 18 ? 20 1 1 B G 12 1_555 B C 41 1_555 -0.158 -0.172 0.525 5.552 -8.822 -0.749 21 B_G12:C41_B B 12 ? B 41 ? 19 1 1 B C 13 1_555 B G 40 1_555 0.171 -0.171 0.121 0.830 -6.651 -1.353 22 B_C13:G40_B B 13 ? B 40 ? 19 1 1 B G 14 1_555 B CBV 39 1_555 -0.006 0.103 -0.428 -4.117 -2.591 -0.505 23 B_G14:CBV39_B B 14 ? B 39 ? 19 1 1 B C 15 1_555 B G 38 1_555 0.225 -0.109 0.009 -0.624 -0.609 2.390 24 B_C15:G38_B B 15 ? B 38 ? 19 1 1 B C 16 1_555 B G 37 1_555 -0.088 -0.375 -0.271 2.305 -2.322 -4.483 25 B_C16:G37_B B 16 ? B 37 ? 19 1 1 B G 17 1_555 B C 36 1_555 -0.193 -0.161 0.042 -5.789 -6.466 0.548 26 B_G17:C36_B B 17 ? B 36 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 24 1_555 A CBV 2 1_555 A G 23 1_555 0.845 -1.678 3.119 0.105 4.111 38.789 -2.974 -1.254 2.935 6.168 -0.157 38.998 1 AA_C1CBV2:G23G24_AA A 1 ? A 24 ? A 2 ? A 23 ? 1 A CBV 2 1_555 A G 23 1_555 A G 3 1_555 A C 22 1_555 -0.873 -2.155 2.875 -0.815 9.276 25.738 -6.335 1.690 2.016 20.007 1.758 27.344 2 AA_CBV2G3:C22G23_AA A 2 ? A 23 ? A 3 ? A 22 ? 1 A G 3 1_555 A C 22 1_555 A G 4 1_555 A C 21 1_555 0.440 -1.764 3.252 -0.616 5.826 26.943 -5.037 -1.065 2.805 12.320 1.303 27.561 3 AA_G3G4:C21C22_AA A 3 ? A 22 ? A 4 ? A 21 ? 1 A G 4 1_555 A C 21 1_555 A G 29 1_555 A C 20 1_555 -1.320 -1.480 3.307 -1.578 2.873 40.379 -2.460 1.729 3.246 4.154 2.281 40.506 4 AA_G4G29:C20C21_AA A 4 ? A 21 ? A 29 ? A 20 ? 1 A G 29 1_555 A C 20 1_555 A A 5 1_555 A A 19 1_555 -2.942 -2.087 3.787 2.513 13.392 27.183 -6.620 6.113 2.258 26.485 -4.970 30.349 5 AA_G29A5:A19C20_AA A 29 ? A 20 ? A 5 ? A 19 ? 1 A A 5 1_555 A A 19 1_555 A A 35 1_555 A U 18 1_555 -1.384 -0.839 3.649 8.993 1.854 78.559 -0.715 1.356 3.483 1.460 -7.080 79.008 6 AA_A5A35:U18A19_AA A 5 ? A 19 ? A 35 ? A 18 ? 1 A G 12 1_555 A C 41 1_555 A C 13 1_555 A G 40 1_555 -0.415 -1.642 3.368 -0.774 5.584 34.182 -3.611 0.578 3.078 9.420 1.306 34.630 7 AA_G12C13:G40C41_AA A 12 ? A 41 ? A 13 ? A 40 ? 1 A C 13 1_555 A G 40 1_555 A G 14 1_555 A CBV 39 1_555 0.799 -2.051 3.205 4.123 6.458 28.339 -5.343 -0.753 2.766 12.895 -8.233 29.336 8 AA_C13G14:CBV39G40_AA A 13 ? A 40 ? A 14 ? A 39 ? 1 A G 14 1_555 A CBV 39 1_555 A C 15 1_555 A G 38 1_555 0.046 -2.469 3.420 0.531 -0.522 28.591 -4.872 0.034 3.463 -1.057 -1.075 28.601 9 AA_G14C15:G38CBV39_AA A 14 ? A 39 ? A 15 ? A 38 ? 1 A C 15 1_555 A G 38 1_555 A C 16 1_555 A G 37 1_555 0.734 -2.241 3.073 3.062 5.442 25.631 -6.196 -0.886 2.617 12.042 -6.774 26.368 10 AA_C15C16:G37G38_AA A 15 ? A 38 ? A 16 ? A 37 ? 1 A C 16 1_555 A G 37 1_555 A G 17 1_555 A C 36 1_555 -0.686 -1.962 3.561 -0.633 0.269 31.744 -3.639 1.127 3.557 0.493 1.157 31.751 11 AA_C16G17:C36G37_AA A 16 ? A 37 ? A 17 ? A 36 ? 1 B C 1 1_555 B G 24 1_555 B CBV 2 1_555 B G 23 1_555 0.599 -1.624 3.039 -1.855 1.980 41.884 -2.455 -1.012 2.935 2.766 2.592 41.968 12 BB_C1CBV2:G23G24_BB B 1 ? B 24 ? B 2 ? B 23 ? 1 B CBV 2 1_555 B G 23 1_555 B G 3 1_555 B C 22 1_555 -0.880 -1.927 3.064 -0.070 11.901 24.912 -6.394 1.832 1.957 25.792 0.152 27.568 13 BB_CBV2G3:C22G23_BB B 2 ? B 23 ? B 3 ? B 22 ? 1 B G 3 1_555 B C 22 1_555 B G 4 1_555 B C 21 1_555 0.078 -1.344 3.243 1.165 5.455 30.981 -3.455 0.065 2.970 10.109 -2.160 31.467 14 BB_G3G4:C21C22_BB B 3 ? B 22 ? B 4 ? B 21 ? 1 B G 4 1_555 B C 21 1_555 B G 29 1_555 B C 20 1_555 -1.090 -1.483 3.334 -2.484 7.307 45.785 -2.497 1.175 3.127 9.314 3.166 46.397 15 BB_G4G29:C20C21_BB B 4 ? B 21 ? B 29 ? B 20 ? 1 B G 29 1_555 B C 20 1_555 B A 5 1_555 B A 19 1_555 -2.505 -1.733 3.561 6.357 2.238 23.752 -4.715 7.737 2.638 5.303 -15.061 24.677 16 BB_G29A5:A19C20_BB B 29 ? B 20 ? B 5 ? B 19 ? 1 B A 5 1_555 B A 19 1_555 B A 35 1_555 B U 18 1_555 -1.299 -1.402 3.964 15.067 3.352 78.591 -1.197 1.485 3.657 2.623 -11.790 79.851 17 BB_A5A35:U18A19_BB B 5 ? B 19 ? B 35 ? B 18 ? 1 B G 12 1_555 B C 41 1_555 B C 13 1_555 B G 40 1_555 -0.529 -1.629 3.341 -0.452 6.344 34.175 -3.677 0.818 3.006 10.680 0.762 34.744 18 BB_G12C13:G40C41_BB B 12 ? B 41 ? B 13 ? B 40 ? 1 B C 13 1_555 B G 40 1_555 B G 14 1_555 B CBV 39 1_555 0.732 -1.861 3.423 3.197 6.574 27.231 -5.350 -0.761 2.966 13.654 -6.639 28.177 19 BB_C13G14:CBV39G40_BB B 13 ? B 40 ? B 14 ? B 39 ? 1 B G 14 1_555 B CBV 39 1_555 B C 15 1_555 B G 38 1_555 0.215 -2.367 3.195 -2.944 -0.073 31.277 -4.359 -0.936 3.167 -0.134 5.446 31.412 20 BB_G14C15:G38CBV39_BB B 14 ? B 39 ? B 15 ? B 38 ? 1 B C 15 1_555 B G 38 1_555 B C 16 1_555 B G 37 1_555 0.207 -2.409 3.245 2.958 1.474 24.467 -6.073 0.395 3.099 3.459 -6.940 24.686 21 BB_C15C16:G37G38_BB B 15 ? B 38 ? B 16 ? B 37 ? 1 B C 16 1_555 B G 37 1_555 B G 17 1_555 B C 36 1_555 -0.434 -1.658 3.497 -0.235 4.761 34.829 -3.483 0.682 3.252 7.907 0.391 35.144 22 BB_C16G17:C36G37_BB B 16 ? B 37 ? B 17 ? B 36 ? # _pdbx_audit_support.funding_organization 'Cancer Research UK' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 'program grant A18604' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 AGMATINE AG2 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #