data_5UED # _entry.id 5UED # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5UED pdb_00005ued 10.2210/pdb5ued/pdb WWPDB D_1000225738 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5UEE PDB . unspecified 5UEF PDB . unspecified 5UEG PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5UED _pdbx_database_status.recvd_initial_deposition_date 2017-01-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 ? 'Tam, C.P.' 2 ? 'Szostak, J.W.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 114 _citation.language ? _citation.page_first 7659 _citation.page_last 7664 _citation.title 'Insight into the mechanism of nonenzymatic RNA primer extension from the structure of an RNA-GpppG complex.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1704006114 _citation.pdbx_database_id_PubMed 28673998 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Tam, C.P.' 2 ? primary 'Walton, T.' 3 ? primary 'Fahrenbach, A.C.' 4 ? primary 'Birrane, G.' 5 ? primary 'Szostak, J.W.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5UED _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.911 _cell.length_a_esd ? _cell.length_b 43.911 _cell.length_b_esd ? _cell.length_c 85.406 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UED _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') ; 4500.794 2 ? ? ? ? 2 non-polymer syn ;[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; 708.426 2 ? ? ? ? 3 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCC)GACUUAAGUCG' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 G n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5UED _struct_ref.pdbx_db_accession 5UED _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5UED A 1 ? 14 ? 5UED 1 ? 14 ? 1 14 2 1 5UED B 1 ? 14 ? 5UED 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 86S non-polymer . ;[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; ? 'C20 H26 N10 O15 P2' 708.426 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5UED _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.42 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M magnesium chloride, 0.2 M Ammonium citrate tribasic pH 7.0, 20% w/v Polyethylene glycol 3,350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-07-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.997 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.997 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5UED _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15113 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.8 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.00 _refine.B_iso_max ? _refine.B_iso_mean 18.038 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5UED _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14252 _refine.ls_number_reflns_R_free 795 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.53 _refine.ls_percent_reflns_R_free 5.3 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21147 _refine.ls_R_factor_R_free 0.23216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21032 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5DHC _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.087 _refine.pdbx_overall_ESU_R_Free 0.085 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.223 _refine.overall_SU_ML 0.047 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 596 _refine_hist.pdbx_number_atoms_ligand 94 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 787 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.025 0.016 766 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.062 0.023 336 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 3.216 1.843 1188 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.552 3.224 810 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.252 0.200 136 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.027 0.021 388 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.021 148 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.418 1.845 766 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.416 1.844 767 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.391 2.785 1189 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.632 18.895 1182 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.629 18.753 1146 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_R_work 1063 _refine_ls_shell.percent_reflns_obs 98.59 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.261 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.192 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5UED _struct.title ;RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5UED _struct_keywords.text 'RNA, dinucleotide' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.683 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A G 4 P ? ? A LCC 3 A G 4 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale4 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LCC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.669 ? ? covale5 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.682 ? ? covale6 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B G 4 P ? ? B LCC 3 B G 4 1_555 ? ? ? ? ? ? ? 1.632 ? ? hydrog1 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 86S 101 ? 18 'binding site for residue 86S A 101' AC2 Software B 86S 101 ? 6 'binding site for residue 86S B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 LCC A 1 ? LCC A 1 . ? 5_675 ? 2 AC1 18 LCC A 1 ? LCC A 1 . ? 1_555 ? 3 AC1 18 LCC A 2 ? LCC A 2 . ? 1_555 ? 4 AC1 18 LCC A 3 ? LCC A 3 . ? 1_555 ? 5 AC1 18 HOH E . ? HOH A 202 . ? 1_555 ? 6 AC1 18 HOH E . ? HOH A 203 . ? 1_555 ? 7 AC1 18 HOH E . ? HOH A 205 . ? 1_555 ? 8 AC1 18 HOH E . ? HOH A 215 . ? 1_555 ? 9 AC1 18 HOH E . ? HOH A 224 . ? 1_555 ? 10 AC1 18 HOH E . ? HOH A 238 . ? 2_775 ? 11 AC1 18 HOH E . ? HOH A 238 . ? 3_575 ? 12 AC1 18 HOH E . ? HOH A 238 . ? 1_555 ? 13 AC1 18 HOH E . ? HOH A 244 . ? 1_555 ? 14 AC1 18 G B 14 ? G B 14 . ? 2_775 ? 15 AC1 18 G B 14 ? G B 14 . ? 1_555 ? 16 AC1 18 HOH F . ? HOH B 210 . ? 1_555 ? 17 AC1 18 HOH F . ? HOH B 212 . ? 1_555 ? 18 AC1 18 HOH F . ? HOH B 214 . ? 2_775 ? 19 AC2 6 G A 14 ? G A 14 . ? 1_555 ? 20 AC2 6 G A 14 ? G A 14 . ? 3_575 ? 21 AC2 6 LCC B 1 ? LCC B 1 . ? 1_555 ? 22 AC2 6 LCC B 1 ? LCC B 1 . ? 4_466 ? 23 AC2 6 LCC B 2 ? LCC B 2 . ? 1_555 ? 24 AC2 6 LCC B 3 ? LCC B 3 . ? 1_555 ? # _atom_sites.entry_id 5UED _atom_sites.fract_transf_matrix[1][1] 0.022773 _atom_sites.fract_transf_matrix[1][2] 0.013148 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026296 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011709 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 86S 1 101 2 86S GP2 A . D 2 86S 1 101 1 86S GP2 B . E 3 HOH 1 201 102 HOH HOH A . E 3 HOH 2 202 49 HOH HOH A . E 3 HOH 3 203 50 HOH HOH A . E 3 HOH 4 204 81 HOH HOH A . E 3 HOH 5 205 16 HOH HOH A . E 3 HOH 6 206 22 HOH HOH A . E 3 HOH 7 207 11 HOH HOH A . E 3 HOH 8 208 99 HOH HOH A . E 3 HOH 9 209 60 HOH HOH A . E 3 HOH 10 210 78 HOH HOH A . E 3 HOH 11 211 8 HOH HOH A . E 3 HOH 12 212 14 HOH HOH A . E 3 HOH 13 213 93 HOH HOH A . E 3 HOH 14 214 56 HOH HOH A . E 3 HOH 15 215 1 HOH HOH A . E 3 HOH 16 216 54 HOH HOH A . E 3 HOH 17 217 76 HOH HOH A . E 3 HOH 18 218 53 HOH HOH A . E 3 HOH 19 219 88 HOH HOH A . E 3 HOH 20 220 65 HOH HOH A . E 3 HOH 21 221 26 HOH HOH A . E 3 HOH 22 222 55 HOH HOH A . E 3 HOH 23 223 104 HOH HOH A . E 3 HOH 24 224 21 HOH HOH A . E 3 HOH 25 225 82 HOH HOH A . E 3 HOH 26 226 87 HOH HOH A . E 3 HOH 27 227 3 HOH HOH A . E 3 HOH 28 228 44 HOH HOH A . E 3 HOH 29 229 86 HOH HOH A . E 3 HOH 30 230 74 HOH HOH A . E 3 HOH 31 231 85 HOH HOH A . E 3 HOH 32 232 75 HOH HOH A . E 3 HOH 33 233 27 HOH HOH A . E 3 HOH 34 234 62 HOH HOH A . E 3 HOH 35 235 19 HOH HOH A . E 3 HOH 36 236 63 HOH HOH A . E 3 HOH 37 237 25 HOH HOH A . E 3 HOH 38 238 106 HOH HOH A . E 3 HOH 39 239 30 HOH HOH A . E 3 HOH 40 240 84 HOH HOH A . E 3 HOH 41 241 45 HOH HOH A . E 3 HOH 42 242 73 HOH HOH A . E 3 HOH 43 243 64 HOH HOH A . E 3 HOH 44 244 46 HOH HOH A . E 3 HOH 45 245 52 HOH HOH A . E 3 HOH 46 246 79 HOH HOH A . E 3 HOH 47 247 72 HOH HOH A . E 3 HOH 48 248 57 HOH HOH A . E 3 HOH 49 249 67 HOH HOH A . E 3 HOH 50 250 10 HOH HOH A . E 3 HOH 51 251 29 HOH HOH A . E 3 HOH 52 252 69 HOH HOH A . E 3 HOH 53 253 83 HOH HOH A . E 3 HOH 54 254 103 HOH HOH A . E 3 HOH 55 255 7 HOH HOH A . E 3 HOH 56 256 105 HOH HOH A . E 3 HOH 57 257 48 HOH HOH A . F 3 HOH 1 201 97 HOH HOH B . F 3 HOH 2 202 90 HOH HOH B . F 3 HOH 3 203 24 HOH HOH B . F 3 HOH 4 204 34 HOH HOH B . F 3 HOH 5 205 98 HOH HOH B . F 3 HOH 6 206 38 HOH HOH B . F 3 HOH 7 207 80 HOH HOH B . F 3 HOH 8 208 92 HOH HOH B . F 3 HOH 9 209 71 HOH HOH B . F 3 HOH 10 210 20 HOH HOH B . F 3 HOH 11 211 89 HOH HOH B . F 3 HOH 12 212 2 HOH HOH B . F 3 HOH 13 213 51 HOH HOH B . F 3 HOH 14 214 66 HOH HOH B . F 3 HOH 15 215 35 HOH HOH B . F 3 HOH 16 216 36 HOH HOH B . F 3 HOH 17 217 23 HOH HOH B . F 3 HOH 18 218 58 HOH HOH B . F 3 HOH 19 219 15 HOH HOH B . F 3 HOH 20 220 68 HOH HOH B . F 3 HOH 21 221 61 HOH HOH B . F 3 HOH 22 222 100 HOH HOH B . F 3 HOH 23 223 40 HOH HOH B . F 3 HOH 24 224 32 HOH HOH B . F 3 HOH 25 225 33 HOH HOH B . F 3 HOH 26 226 101 HOH HOH B . F 3 HOH 27 227 39 HOH HOH B . F 3 HOH 28 228 43 HOH HOH B . F 3 HOH 29 229 41 HOH HOH B . F 3 HOH 30 230 37 HOH HOH B . F 3 HOH 31 231 95 HOH HOH B . F 3 HOH 32 232 94 HOH HOH B . F 3 HOH 33 233 31 HOH HOH B . F 3 HOH 34 234 70 HOH HOH B . F 3 HOH 35 235 91 HOH HOH B . F 3 HOH 36 236 47 HOH HOH B . F 3 HOH 37 237 77 HOH HOH B . F 3 HOH 38 238 59 HOH HOH B . F 3 HOH 39 239 96 HOH HOH B . F 3 HOH 40 240 42 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1460 ? 1 MORE -3 ? 1 'SSA (A^2)' 6020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 207 ? E HOH . 2 1 A HOH 220 ? E HOH . 3 1 A HOH 238 ? E HOH . 4 1 A HOH 243 ? E HOH . 5 1 A HOH 250 ? E HOH . 6 1 A HOH 256 ? E HOH . 7 1 B HOH 203 ? F HOH . 8 1 B HOH 217 ? F HOH . 9 1 B HOH 240 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-05 2 'Structure model' 1 1 2017-07-19 3 'Structure model' 1 2 2017-08-02 4 'Structure model' 1 3 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model 8 4 'Structure model' pdbx_struct_special_symmetry # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.name' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A LCC 2 ? ? P A LCC 3 ? ? 1.683 1.607 0.076 0.012 Y 2 1 P A U 7 ? ? OP2 A U 7 ? ? 1.379 1.485 -0.106 0.017 N 3 1 "O3'" B LCC 2 ? ? P B LCC 3 ? ? 1.682 1.607 0.075 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A G 11 ? ? P A G 11 ? ? OP2 A G 11 ? ? 95.10 105.70 -10.60 0.90 N 2 1 "O5'" B G 11 ? ? P B G 11 ? ? OP2 B G 11 ? ? 94.25 105.70 -11.45 0.90 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 86S PA P N N 1 86S O1A O N N 2 86S O2A O N N 3 86S O6A O N N 4 86S C6A C N N 5 86S N1A N N N 6 86S C2A C N N 7 86S N2A N N N 8 86S N3A N N N 9 86S C4A C Y N 10 86S C5A C Y N 11 86S N7A N Y N 12 86S C8A C Y N 13 86S N9A N Y N 14 86S C1D C N R 15 86S O4D O N N 16 86S C2D C N R 17 86S O2D O N N 18 86S C3D C N S 19 86S O3D O N N 20 86S C4D C N R 21 86S C5D C N N 22 86S O5D O N N 23 86S O3A O N N 24 86S PG P N N 25 86S O1G O N N 26 86S O2G O N N 27 86S O5E O N N 28 86S C5E C N N 29 86S C4E C N R 30 86S O4E O N N 31 86S C3E C N S 32 86S O3E O N N 33 86S C2E C N R 34 86S O2E O N N 35 86S C1E C N R 36 86S N9B N Y N 37 86S C4B C Y N 38 86S N3B N N N 39 86S C2B C N N 40 86S N2B N N N 41 86S N1B N N N 42 86S C6B C N N 43 86S O6B O N N 44 86S C5B C Y N 45 86S N7B N Y N 46 86S C8B C Y N 47 86S H1 H N N 48 86S H2 H N N 49 86S H3 H N N 50 86S H4 H N N 51 86S H5 H N N 52 86S H6 H N N 53 86S H7 H N N 54 86S H8 H N N 55 86S H9 H N N 56 86S H10 H N N 57 86S H11 H N N 58 86S H12 H N N 59 86S H13 H N N 60 86S H14 H N N 61 86S H15 H N N 62 86S H16 H N N 63 86S H17 H N N 64 86S H18 H N N 65 86S H19 H N N 66 86S H20 H N N 67 86S H21 H N N 68 86S H22 H N N 69 86S H23 H N N 70 86S H24 H N N 71 86S H25 H N N 72 86S H26 H N N 73 A OP3 O N N 74 A P P N N 75 A OP1 O N N 76 A OP2 O N N 77 A "O5'" O N N 78 A "C5'" C N N 79 A "C4'" C N R 80 A "O4'" O N N 81 A "C3'" C N S 82 A "O3'" O N N 83 A "C2'" C N R 84 A "O2'" O N N 85 A "C1'" C N R 86 A N9 N Y N 87 A C8 C Y N 88 A N7 N Y N 89 A C5 C Y N 90 A C6 C Y N 91 A N6 N N N 92 A N1 N Y N 93 A C2 C Y N 94 A N3 N Y N 95 A C4 C Y N 96 A HOP3 H N N 97 A HOP2 H N N 98 A "H5'" H N N 99 A "H5''" H N N 100 A "H4'" H N N 101 A "H3'" H N N 102 A "HO3'" H N N 103 A "H2'" H N N 104 A "HO2'" H N N 105 A "H1'" H N N 106 A H8 H N N 107 A H61 H N N 108 A H62 H N N 109 A H2 H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 LCC "O5'" O N N 187 LCC "C5'" C N N 188 LCC "C4'" C N R 189 LCC "O4'" O N N 190 LCC "C1'" C N R 191 LCC N1 N N N 192 LCC C6 C N N 193 LCC C5 C N N 194 LCC C5M C N N 195 LCC C4 C N N 196 LCC N4 N N N 197 LCC N3 N N N 198 LCC C2 C N N 199 LCC O2 O N N 200 LCC "C3'" C N S 201 LCC "C2'" C N R 202 LCC "O2'" O N N 203 LCC "O3'" O N N 204 LCC "C6'" C N N 205 LCC P P N N 206 LCC O1P O N N 207 LCC O2P O N N 208 LCC OXT O N N 209 LCC "H5'1" H N N 210 LCC "H5'2" H N N 211 LCC "H1'" H N N 212 LCC H6 H N N 213 LCC H5M1 H N N 214 LCC H5M2 H N N 215 LCC H5M3 H N N 216 LCC H41 H N N 217 LCC H42 H N N 218 LCC "H3'" H N N 219 LCC "H2'1" H N N 220 LCC H3T H N N 221 LCC "H6'1" H N N 222 LCC "H6'2" H N N 223 LCC H1P H N N 224 LCC HXT H N N 225 U OP3 O N N 226 U P P N N 227 U OP1 O N N 228 U OP2 O N N 229 U "O5'" O N N 230 U "C5'" C N N 231 U "C4'" C N R 232 U "O4'" O N N 233 U "C3'" C N S 234 U "O3'" O N N 235 U "C2'" C N R 236 U "O2'" O N N 237 U "C1'" C N R 238 U N1 N N N 239 U C2 C N N 240 U O2 O N N 241 U N3 N N N 242 U C4 C N N 243 U O4 O N N 244 U C5 C N N 245 U C6 C N N 246 U HOP3 H N N 247 U HOP2 H N N 248 U "H5'" H N N 249 U "H5''" H N N 250 U "H4'" H N N 251 U "H3'" H N N 252 U "HO3'" H N N 253 U "H2'" H N N 254 U "HO2'" H N N 255 U "H1'" H N N 256 U H3 H N N 257 U H5 H N N 258 U H6 H N N 259 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 86S N2A C2A sing N N 1 86S C2A N1A sing N N 2 86S C2A N3A doub N N 3 86S N1A C6A sing N N 4 86S N3A C4A sing N N 5 86S C6A O6A doub N N 6 86S C6A C5A sing N N 7 86S C4A C5A doub Y N 8 86S C4A N9A sing Y N 9 86S C1D N9A sing N N 10 86S C1D O4D sing N N 11 86S C1D C2D sing N N 12 86S C5A N7A sing Y N 13 86S N9A C8A sing Y N 14 86S O4D C4D sing N N 15 86S N7A C8A doub Y N 16 86S O2D C2D sing N N 17 86S C2D C3D sing N N 18 86S C4D C3D sing N N 19 86S C4D C5D sing N N 20 86S O5D C5D sing N N 21 86S O5D PA sing N N 22 86S C3D O3D sing N N 23 86S N2B C2B sing N N 24 86S C2B N1B sing N N 25 86S C2B N3B doub N N 26 86S N1B C6B sing N N 27 86S N3B C4B sing N N 28 86S C6B O6B doub N N 29 86S C6B C5B sing N N 30 86S C4B C5B doub Y N 31 86S C4B N9B sing Y N 32 86S C5B N7B sing Y N 33 86S O1A PA doub N N 34 86S C1E N9B sing N N 35 86S C1E O4E sing N N 36 86S C1E C2E sing N N 37 86S N7B C8B doub Y N 38 86S N9B C8B sing Y N 39 86S O4E C4E sing N N 40 86S PA O3A sing N N 41 86S PA O2A sing N N 42 86S O2E C2E sing N N 43 86S O3A PG sing N N 44 86S C2E C3E sing N N 45 86S C4E C3E sing N N 46 86S C4E C5E sing N N 47 86S O1G PG doub N N 48 86S PG O2G sing N N 49 86S PG O5E sing N N 50 86S C3E O3E sing N N 51 86S O5E C5E sing N N 52 86S O2A H1 sing N N 53 86S N1A H2 sing N N 54 86S N2A H3 sing N N 55 86S N2A H4 sing N N 56 86S C8A H5 sing N N 57 86S C1D H6 sing N N 58 86S C2D H7 sing N N 59 86S O2D H8 sing N N 60 86S C3D H9 sing N N 61 86S O3D H10 sing N N 62 86S C4D H11 sing N N 63 86S C5D H12 sing N N 64 86S C5D H13 sing N N 65 86S O2G H14 sing N N 66 86S C5E H15 sing N N 67 86S C5E H16 sing N N 68 86S C4E H17 sing N N 69 86S C3E H18 sing N N 70 86S O3E H19 sing N N 71 86S C2E H20 sing N N 72 86S O2E H21 sing N N 73 86S C1E H22 sing N N 74 86S N2B H23 sing N N 75 86S N2B H24 sing N N 76 86S N1B H25 sing N N 77 86S C8B H26 sing N N 78 A OP3 P sing N N 79 A OP3 HOP3 sing N N 80 A P OP1 doub N N 81 A P OP2 sing N N 82 A P "O5'" sing N N 83 A OP2 HOP2 sing N N 84 A "O5'" "C5'" sing N N 85 A "C5'" "C4'" sing N N 86 A "C5'" "H5'" sing N N 87 A "C5'" "H5''" sing N N 88 A "C4'" "O4'" sing N N 89 A "C4'" "C3'" sing N N 90 A "C4'" "H4'" sing N N 91 A "O4'" "C1'" sing N N 92 A "C3'" "O3'" sing N N 93 A "C3'" "C2'" sing N N 94 A "C3'" "H3'" sing N N 95 A "O3'" "HO3'" sing N N 96 A "C2'" "O2'" sing N N 97 A "C2'" "C1'" sing N N 98 A "C2'" "H2'" sing N N 99 A "O2'" "HO2'" sing N N 100 A "C1'" N9 sing N N 101 A "C1'" "H1'" sing N N 102 A N9 C8 sing Y N 103 A N9 C4 sing Y N 104 A C8 N7 doub Y N 105 A C8 H8 sing N N 106 A N7 C5 sing Y N 107 A C5 C6 sing Y N 108 A C5 C4 doub Y N 109 A C6 N6 sing N N 110 A C6 N1 doub Y N 111 A N6 H61 sing N N 112 A N6 H62 sing N N 113 A N1 C2 sing Y N 114 A C2 N3 doub Y N 115 A C2 H2 sing N N 116 A N3 C4 sing Y N 117 C OP3 P sing N N 118 C OP3 HOP3 sing N N 119 C P OP1 doub N N 120 C P OP2 sing N N 121 C P "O5'" sing N N 122 C OP2 HOP2 sing N N 123 C "O5'" "C5'" sing N N 124 C "C5'" "C4'" sing N N 125 C "C5'" "H5'" sing N N 126 C "C5'" "H5''" sing N N 127 C "C4'" "O4'" sing N N 128 C "C4'" "C3'" sing N N 129 C "C4'" "H4'" sing N N 130 C "O4'" "C1'" sing N N 131 C "C3'" "O3'" sing N N 132 C "C3'" "C2'" sing N N 133 C "C3'" "H3'" sing N N 134 C "O3'" "HO3'" sing N N 135 C "C2'" "O2'" sing N N 136 C "C2'" "C1'" sing N N 137 C "C2'" "H2'" sing N N 138 C "O2'" "HO2'" sing N N 139 C "C1'" N1 sing N N 140 C "C1'" "H1'" sing N N 141 C N1 C2 sing N N 142 C N1 C6 sing N N 143 C C2 O2 doub N N 144 C C2 N3 sing N N 145 C N3 C4 doub N N 146 C C4 N4 sing N N 147 C C4 C5 sing N N 148 C N4 H41 sing N N 149 C N4 H42 sing N N 150 C C5 C6 doub N N 151 C C5 H5 sing N N 152 C C6 H6 sing N N 153 G OP3 P sing N N 154 G OP3 HOP3 sing N N 155 G P OP1 doub N N 156 G P OP2 sing N N 157 G P "O5'" sing N N 158 G OP2 HOP2 sing N N 159 G "O5'" "C5'" sing N N 160 G "C5'" "C4'" sing N N 161 G "C5'" "H5'" sing N N 162 G "C5'" "H5''" sing N N 163 G "C4'" "O4'" sing N N 164 G "C4'" "C3'" sing N N 165 G "C4'" "H4'" sing N N 166 G "O4'" "C1'" sing N N 167 G "C3'" "O3'" sing N N 168 G "C3'" "C2'" sing N N 169 G "C3'" "H3'" sing N N 170 G "O3'" "HO3'" sing N N 171 G "C2'" "O2'" sing N N 172 G "C2'" "C1'" sing N N 173 G "C2'" "H2'" sing N N 174 G "O2'" "HO2'" sing N N 175 G "C1'" N9 sing N N 176 G "C1'" "H1'" sing N N 177 G N9 C8 sing Y N 178 G N9 C4 sing Y N 179 G C8 N7 doub Y N 180 G C8 H8 sing N N 181 G N7 C5 sing Y N 182 G C5 C6 sing N N 183 G C5 C4 doub Y N 184 G C6 O6 doub N N 185 G C6 N1 sing N N 186 G N1 C2 sing N N 187 G N1 H1 sing N N 188 G C2 N2 sing N N 189 G C2 N3 doub N N 190 G N2 H21 sing N N 191 G N2 H22 sing N N 192 G N3 C4 sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 LCC "O5'" "C5'" sing N N 196 LCC "O5'" P sing N N 197 LCC "C5'" "C4'" sing N N 198 LCC "C5'" "H5'1" sing N N 199 LCC "C5'" "H5'2" sing N N 200 LCC "C4'" "O4'" sing N N 201 LCC "C4'" "C3'" sing N N 202 LCC "C4'" "C6'" sing N N 203 LCC "O4'" "C1'" sing N N 204 LCC "C1'" N1 sing N N 205 LCC "C1'" "C2'" sing N N 206 LCC "C1'" "H1'" sing N N 207 LCC N1 C6 sing N N 208 LCC N1 C2 sing N N 209 LCC C6 C5 doub N N 210 LCC C6 H6 sing N N 211 LCC C5 C5M sing N N 212 LCC C5 C4 sing N N 213 LCC C5M H5M1 sing N N 214 LCC C5M H5M2 sing N N 215 LCC C5M H5M3 sing N N 216 LCC C4 N4 sing N N 217 LCC C4 N3 doub N N 218 LCC N4 H41 sing N N 219 LCC N4 H42 sing N N 220 LCC N3 C2 sing N N 221 LCC C2 O2 doub N N 222 LCC "C3'" "C2'" sing N N 223 LCC "C3'" "O3'" sing N N 224 LCC "C3'" "H3'" sing N N 225 LCC "C2'" "O2'" sing N N 226 LCC "C2'" "H2'1" sing N N 227 LCC "O2'" "C6'" sing N N 228 LCC "O3'" H3T sing N N 229 LCC "C6'" "H6'1" sing N N 230 LCC "C6'" "H6'2" sing N N 231 LCC P O1P sing N N 232 LCC P O2P doub N N 233 LCC P OXT sing N N 234 LCC O1P H1P sing N N 235 LCC OXT HXT sing N N 236 U OP3 P sing N N 237 U OP3 HOP3 sing N N 238 U P OP1 doub N N 239 U P OP2 sing N N 240 U P "O5'" sing N N 241 U OP2 HOP2 sing N N 242 U "O5'" "C5'" sing N N 243 U "C5'" "C4'" sing N N 244 U "C5'" "H5'" sing N N 245 U "C5'" "H5''" sing N N 246 U "C4'" "O4'" sing N N 247 U "C4'" "C3'" sing N N 248 U "C4'" "H4'" sing N N 249 U "O4'" "C1'" sing N N 250 U "C3'" "O3'" sing N N 251 U "C3'" "C2'" sing N N 252 U "C3'" "H3'" sing N N 253 U "O3'" "HO3'" sing N N 254 U "C2'" "O2'" sing N N 255 U "C2'" "C1'" sing N N 256 U "C2'" "H2'" sing N N 257 U "O2'" "HO2'" sing N N 258 U "C1'" N1 sing N N 259 U "C1'" "H1'" sing N N 260 U N1 C2 sing N N 261 U N1 C6 sing N N 262 U C2 O2 doub N N 263 U C2 N3 sing N N 264 U N3 C4 sing N N 265 U N3 H3 sing N N 266 U C4 O4 doub N N 267 U C4 C5 sing N N 268 U C5 C6 doub N N 269 U C5 H5 sing N N 270 U C6 H6 sing N N 271 # _ndb_struct_conf_na.entry_id 5UED _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 4 1_555 B C 13 1_555 -0.186 -0.152 0.002 -4.130 -18.695 0.049 1 A_G4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.113 -0.101 0.176 6.250 -11.601 0.921 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.142 -0.180 0.086 5.805 -15.623 0.240 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.169 -0.073 -0.036 0.638 -12.003 -1.522 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.007 -0.066 -0.041 4.452 -6.944 2.092 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.015 -0.093 0.017 -2.949 -15.745 5.075 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.069 -0.108 -0.170 -6.477 -12.205 -0.269 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.219 -0.116 -0.114 -10.788 -16.626 1.454 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 -0.014 -0.119 0.116 -4.015 -14.593 1.176 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B G 4 1_555 0.186 -0.133 0.047 1.767 -14.358 -0.435 10 A_C13:G4_B A 13 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 0.159 -1.031 3.044 0.237 3.530 32.846 -2.361 -0.243 2.921 6.221 -0.417 33.031 1 AA_G4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.416 -1.526 3.261 1.769 5.516 32.455 -3.593 -0.444 2.986 9.771 -3.135 32.955 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.787 -1.982 3.345 -2.160 11.246 28.364 -5.818 1.099 2.451 21.857 4.199 30.545 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 0.069 -1.163 3.243 -2.622 7.941 31.569 -3.378 -0.555 2.859 14.284 4.717 32.631 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.505 -1.549 3.295 1.620 17.771 31.218 -4.799 -0.613 2.155 30.137 -2.748 35.848 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.685 -1.418 3.352 1.431 6.505 34.640 -3.290 1.339 3.015 10.801 -2.376 35.255 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.750 -1.892 3.364 3.825 9.364 27.295 -5.723 -0.696 2.661 19.034 -7.774 29.075 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.244 -1.253 3.096 -2.503 4.582 32.998 -2.881 0.041 2.911 8.004 4.372 33.397 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B G 4 1_555 0.106 -1.113 3.130 0.913 5.205 34.084 -2.632 -0.046 2.935 8.814 -1.547 34.479 9 AA_U12C13:G4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; 86S 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5DHC _pdbx_initial_refinement_model.details ? #