data_5V2H # _entry.id 5V2H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.359 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5V2H pdb_00005v2h 10.2210/pdb5v2h/pdb WWPDB D_1000226779 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5V2H _pdbx_database_status.recvd_initial_deposition_date 2017-03-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Harp, J.M.' 1 0000-0002-9116-5606 'Egli, M.' 2 0000-0003-4145-356X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Am. Chem. Soc.' _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 139 _citation.language ? _citation.page_first 8537 _citation.page_last 8546 _citation.title 'Chirality Dependent Potency Enhancement and Structural Impact of Glycol Nucleic Acid Modification on siRNA.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.7b02694 _citation.pdbx_database_id_PubMed 28570818 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schlegel, M.K.' 1 ? primary 'Foster, D.J.' 2 ? primary ;Kel'in, A.V. ; 3 ? primary 'Zlatev, I.' 4 ? primary 'Bisbe, A.' 5 ? primary 'Jayaraman, M.' 6 ? primary 'Lackey, J.G.' 7 ? primary 'Rajeev, K.G.' 8 ? primary 'Charisse, K.' 9 ? primary 'Harp, J.' 10 ? primary 'Pallan, P.S.' 11 ? primary 'Maier, M.A.' 12 ? primary 'Egli, M.' 13 ? primary 'Manoharan, M.' 14 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.461 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5V2H _cell.details ? _cell.formula_units_Z ? _cell.length_a 79.029 _cell.length_a_esd ? _cell.length_b 31.901 _cell.length_b_esd ? _cell.length_c 33.782 _cell.length_c_esd ? _cell.volume 85165.183 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(CBV)P*GP*AP*AP*(ZTH)P*UP*CP*G)-3') ; 2561.448 4 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 247 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CBV)GAA(ZTH)UCG' _entity_poly.pdbx_seq_one_letter_code_can CGAAXUCG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CBV n 1 2 G n 1 3 A n 1 4 A n 1 5 ZTH n 1 6 U n 1 7 C n 1 8 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5V2H _struct_ref.pdbx_db_accession 5V2H _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5V2H A 1 ? 8 ? 5V2H 1 ? 8 ? 1 8 2 1 5V2H B 1 ? 8 ? 5V2H 1 ? 8 ? 1 8 3 1 5V2H C 1 ? 8 ? 5V2H 1 ? 8 ? 1 8 4 1 5V2H D 1 ? 8 ? 5V2H 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 ZTH non-polymer . "(S)-1'-(2',3'-DIHYDROXYPROPYL)-THYMINE" ? 'C8 H13 N2 O7 P' 280.172 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5V2H _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.5 mM oligonucleotide, 40 mM sodium chloride, 10 mM magnesium chloride, 10 mM cobalt(III) hexamine chloride, 20 mM sodium cacodylate, 5% 2-methyl-2,4-pentanediol equilibrated against 40% 2-methyl-2-4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-03-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91836 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91836 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 5.18 _reflns.entry_id 5V2H _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.08 _reflns.d_resolution_low 33.781 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 35479 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.3 _reflns.pdbx_Rmerge_I_obs 0.164 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.74 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.069 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.969 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.08 _reflns_shell.d_res_low 1.119 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.44 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3532 _reflns_shell.percent_possible_all 97.14 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.2652 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.2652 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.822 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 11.8546699308 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5V2H _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.08001306231 _refine.ls_d_res_low 33.7809065231 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 35373 _refine.ls_number_reflns_R_free 1761 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.4194436794 _refine.ls_percent_reflns_R_free 4.97837333559 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.13663673266 _refine.ls_R_factor_R_free 0.156576755314 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.135587728698 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.42213021666 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 15.8804008545 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0713631076248 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 660 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 247 _refine_hist.number_atoms_total 915 _refine_hist.d_res_high 1.08001306231 _refine_hist.d_res_low 33.7809065231 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.00915719927466 ? 738 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.30319772411 ? 1115 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.042518394967 ? 144 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0181105058721 ? 32 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 15.4545883563 ? 400 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.08 1.1092 . . 140 2547 96.8288288288 . . . 0.179215208801 . 0.183851155821 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1092 1.1419 . . 114 2586 97.3674720519 . . . 0.151563884344 . 0.142834995717 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1419 1.1787 . . 144 2555 97.016534867 . . . 0.169905577179 . 0.132307642623 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.1787 1.2208 . . 119 2593 97.0651395848 . . . 0.151242079596 . 0.126665453955 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2208 1.2697 . . 155 2496 96.610787172 . . . 0.150017744297 . 0.115487819098 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.2697 1.3275 . . 125 2582 96.7476769121 . . . 0.138537844494 . 0.111749979716 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3275 1.3975 . . 108 2509 95.0254175744 . . . 0.142718980143 . 0.111866952921 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3975 1.4851 . . 130 2638 99.2114695341 . . . 0.12795595096 . 0.108468732493 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4851 1.5997 . . 153 2631 99.3221548341 . . . 0.134789328499 . 0.110365613407 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5997 1.7607 . . 173 2585 98.9239598278 . . . 0.132572929312 . 0.10821211953 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7607 2.0155 . . 138 2618 98.0085348506 . . . 0.13748311867 . 0.120826520458 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0155 2.5391 . . 138 2520 94.8608137045 . . . 0.180133406145 . 0.145967507487 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5391 33.7974 . . 124 2752 99.4123746975 . . . 0.186247396192 . 0.175803393136 . . . . . . . . . . # _struct.entry_id 5V2H _struct.title 'RNA octamer containing glycol nucleic acid, SgnT' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5V2H _struct_keywords.text 'RNA, glycol nucleic acid' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CBV 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A CBV 1 A G 2 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A A 4 "O3'" ? ? ? 1_555 A ZTH 5 P ? ? A A 4 A ZTH 5 1_555 ? ? ? ? ? ? ? 1.560 ? ? covale3 covale one ? A ZTH 5 O2G ? ? ? 1_555 A U 6 P ? ? A ZTH 5 A U 6 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale4 covale one ? B CBV 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B CBV 1 B G 2 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale5 covale both ? B A 4 "O3'" ? ? ? 1_555 B ZTH 5 P ? ? B A 4 B ZTH 5 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale6 covale one ? B ZTH 5 O2G ? ? ? 1_555 B U 6 P ? ? B ZTH 5 B U 6 1_555 ? ? ? ? ? ? ? 1.568 ? ? covale7 covale one ? C CBV 1 "O3'" ? ? ? 1_555 C G 2 P ? ? C CBV 1 C G 2 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale8 covale both ? C A 4 "O3'" ? ? ? 1_555 C ZTH 5 P ? ? C A 4 C ZTH 5 1_555 ? ? ? ? ? ? ? 1.560 ? ? covale9 covale one ? C ZTH 5 O2G ? ? ? 1_555 C U 6 P ? ? C ZTH 5 C U 6 1_555 ? ? ? ? ? ? ? 1.564 ? ? covale10 covale one ? D CBV 1 "O3'" ? ? ? 1_555 D G 2 P ? ? D CBV 1 D G 2 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale11 covale both ? D A 4 "O3'" ? ? ? 1_555 D ZTH 5 P ? ? D A 4 D ZTH 5 1_555 ? ? ? ? ? ? ? 1.557 ? ? covale12 covale one ? D ZTH 5 O2G ? ? ? 1_555 D U 6 P ? ? D ZTH 5 D U 6 1_555 ? ? ? ? ? ? ? 1.565 ? ? metalc1 metalc ? ? D U 6 OP2 ? ? ? 1_555 F MG . MG ? ? D U 6 D MG 101 1_555 ? ? ? ? ? ? ? 2.866 ? ? metalc2 metalc ? ? D C 7 OP2 ? ? ? 1_555 F MG . MG ? ? D C 7 D MG 101 1_555 ? ? ? ? ? ? ? 2.752 ? ? hydrog1 hydrog ? ? A CBV 1 N3 ? ? ? 1_555 B G 8 N1 ? ? A CBV 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A CBV 1 N4 ? ? ? 1_555 B G 8 O6 ? ? A CBV 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A CBV 1 O2 ? ? ? 1_555 B G 8 N2 ? ? A CBV 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 2 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 3 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 3 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 B ZTH 5 N3 ? ? A A 4 B ZTH 5 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 B ZTH 5 O2 ? ? A A 4 B ZTH 5 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog11 hydrog ? ? A ZTH 5 N3 ? ? ? 1_555 B A 4 N1 ? ? A ZTH 5 B A 4 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog12 hydrog ? ? A ZTH 5 O2 ? ? ? 1_555 B A 4 N6 ? ? A ZTH 5 B A 4 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 6 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 6 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 7 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 B CBV 1 N3 ? ? A G 8 B CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 B CBV 1 O2 ? ? A G 8 B CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 B CBV 1 N4 ? ? A G 8 B CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C CBV 1 N3 ? ? ? 1_555 D G 8 N1 ? ? C CBV 1 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C CBV 1 N4 ? ? ? 1_555 D G 8 O6 ? ? C CBV 1 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C CBV 1 O2 ? ? ? 1_555 D G 8 N2 ? ? C CBV 1 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 2 D C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C A 3 N1 ? ? ? 1_555 D U 6 N3 ? ? C A 3 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C A 3 N6 ? ? ? 1_555 D U 6 O4 ? ? C A 3 D U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C A 4 N1 ? ? ? 1_555 D ZTH 5 N3 ? ? C A 4 D ZTH 5 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog30 hydrog ? ? C A 4 N6 ? ? ? 1_555 D ZTH 5 O2 ? ? C A 4 D ZTH 5 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog31 hydrog ? ? C ZTH 5 N3 ? ? ? 1_555 D A 4 N1 ? ? C ZTH 5 D A 4 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog32 hydrog ? ? C ZTH 5 O2 ? ? ? 1_555 D A 4 N6 ? ? C ZTH 5 D A 4 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog33 hydrog ? ? C U 6 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 6 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C U 6 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 6 D A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 7 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 7 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 7 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 8 N1 ? ? ? 1_555 D CBV 1 N3 ? ? C G 8 D CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 8 N2 ? ? ? 1_555 D CBV 1 O2 ? ? C G 8 D CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 8 O6 ? ? ? 1_555 D CBV 1 N4 ? ? C G 8 D CBV 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NCO 101 ? 12 'binding site for residue NCO B 101' AC2 Software D MG 101 ? 3 'binding site for residue MG D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 C B 7 ? C B 7 . ? 1_555 ? 2 AC1 12 G B 8 ? G B 8 . ? 1_555 ? 3 AC1 12 HOH H . ? HOH B 209 . ? 1_555 ? 4 AC1 12 HOH H . ? HOH B 216 . ? 1_555 ? 5 AC1 12 HOH H . ? HOH B 218 . ? 1_555 ? 6 AC1 12 HOH H . ? HOH B 228 . ? 1_555 ? 7 AC1 12 HOH H . ? HOH B 239 . ? 1_555 ? 8 AC1 12 HOH H . ? HOH B 243 . ? 1_555 ? 9 AC1 12 HOH H . ? HOH B 247 . ? 1_555 ? 10 AC1 12 C D 7 ? C D 7 . ? 1_555 ? 11 AC1 12 G D 8 ? G D 8 . ? 1_555 ? 12 AC1 12 MG F . ? MG D 101 . ? 1_555 ? 13 AC2 3 NCO E . ? NCO B 101 . ? 1_555 ? 14 AC2 3 U D 6 ? U D 6 . ? 1_555 ? 15 AC2 3 C D 7 ? C D 7 . ? 1_555 ? # _atom_sites.entry_id 5V2H _atom_sites.fract_transf_matrix[1][1] 0.012654 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000102 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031347 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029603 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? 1.35700 25.34896 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? 25.62398 1.50364 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CO ? ? 14.25116 9.13684 3.55259 5.36759 0.30544 48.44770 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? 24.73122 6.32584 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 6.67814 2.96430 2.32496 4.14073 0.42890 71.01992 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? 19.97189 1.75589 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? 15.80542 1.70748 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? 1.42069 35.72801 ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CBV 1 1 1 CBV CBV A . n A 1 2 G 2 2 2 G Gr A . n A 1 3 A 3 3 3 A Ar A . n A 1 4 A 4 4 4 A Ar A . n A 1 5 ZTH 5 5 5 ZTH ZTH A . n A 1 6 U 6 6 6 U Ur A . n A 1 7 C 7 7 7 C Cr A . n A 1 8 G 8 8 8 G Gr A . n B 1 1 CBV 1 1 1 CBV CBV B . n B 1 2 G 2 2 2 G Gr B . n B 1 3 A 3 3 3 A Ar B . n B 1 4 A 4 4 4 A Ar B . n B 1 5 ZTH 5 5 5 ZTH ZTH B . n B 1 6 U 6 6 6 U Ur B . n B 1 7 C 7 7 7 C Cr B . n B 1 8 G 8 8 8 G Gr B . n C 1 1 CBV 1 1 1 CBV CBV C . n C 1 2 G 2 2 2 G Gr C . n C 1 3 A 3 3 3 A Ar C . n C 1 4 A 4 4 4 A Ar C . n C 1 5 ZTH 5 5 5 ZTH ZTH C . n C 1 6 U 6 6 6 U Ur C . n C 1 7 C 7 7 7 C Cr C . n C 1 8 G 8 8 8 G Gr C . n D 1 1 CBV 1 1 1 CBV CBV D . n D 1 2 G 2 2 2 G Gr D . n D 1 3 A 3 3 3 A Ar D . n D 1 4 A 4 4 4 A Ar D . n D 1 5 ZTH 5 5 5 ZTH ZTH D . n D 1 6 U 6 6 6 U Ur D . n D 1 7 C 7 7 7 C Cr D . n D 1 8 G 8 8 8 G Gr D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NCO 1 101 1 NCO NCO B . F 3 MG 1 101 2 MG MG D . G 4 HOH 1 101 122 HOH HOH A . G 4 HOH 2 102 139 HOH HOH A . G 4 HOH 3 103 66 HOH HOH A . G 4 HOH 4 104 179 HOH HOH A . G 4 HOH 5 105 22 HOH HOH A . G 4 HOH 6 106 218 HOH HOH A . G 4 HOH 7 107 214 HOH HOH A . G 4 HOH 8 108 55 HOH HOH A . G 4 HOH 9 109 155 HOH HOH A . G 4 HOH 10 110 116 HOH HOH A . G 4 HOH 11 111 64 HOH HOH A . G 4 HOH 12 112 75 HOH HOH A . G 4 HOH 13 113 53 HOH HOH A . G 4 HOH 14 114 70 HOH HOH A . G 4 HOH 15 115 16 HOH HOH A . G 4 HOH 16 116 114 HOH HOH A . G 4 HOH 17 117 135 HOH HOH A . G 4 HOH 18 118 227 HOH HOH A . G 4 HOH 19 119 237 HOH HOH A . G 4 HOH 20 120 95 HOH HOH A . G 4 HOH 21 121 120 HOH HOH A . G 4 HOH 22 122 156 HOH HOH A . G 4 HOH 23 123 115 HOH HOH A . G 4 HOH 24 124 1 HOH HOH A . G 4 HOH 25 125 77 HOH HOH A . G 4 HOH 26 126 118 HOH HOH A . G 4 HOH 27 127 37 HOH HOH A . G 4 HOH 28 128 94 HOH HOH A . G 4 HOH 29 129 33 HOH HOH A . G 4 HOH 30 130 68 HOH HOH A . G 4 HOH 31 131 10 HOH HOH A . G 4 HOH 32 132 232 HOH HOH A . G 4 HOH 33 133 93 HOH HOH A . G 4 HOH 34 134 178 HOH HOH A . G 4 HOH 35 135 35 HOH HOH A . G 4 HOH 36 136 138 HOH HOH A . G 4 HOH 37 137 106 HOH HOH A . G 4 HOH 38 138 46 HOH HOH A . G 4 HOH 39 139 188 HOH HOH A . G 4 HOH 40 140 207 HOH HOH A . G 4 HOH 41 141 90 HOH HOH A . G 4 HOH 42 142 34 HOH HOH A . G 4 HOH 43 143 205 HOH HOH A . G 4 HOH 44 144 133 HOH HOH A . G 4 HOH 45 145 161 HOH HOH A . G 4 HOH 46 146 163 HOH HOH A . G 4 HOH 47 147 240 HOH HOH A . G 4 HOH 48 148 208 HOH HOH A . G 4 HOH 49 149 78 HOH HOH A . G 4 HOH 50 150 247 HOH HOH A . G 4 HOH 51 151 111 HOH HOH A . G 4 HOH 52 152 143 HOH HOH A . G 4 HOH 53 153 131 HOH HOH A . G 4 HOH 54 154 198 HOH HOH A . G 4 HOH 55 155 231 HOH HOH A . G 4 HOH 56 156 142 HOH HOH A . H 4 HOH 1 201 211 HOH HOH B . H 4 HOH 2 202 87 HOH HOH B . H 4 HOH 3 203 99 HOH HOH B . H 4 HOH 4 204 128 HOH HOH B . H 4 HOH 5 205 101 HOH HOH B . H 4 HOH 6 206 73 HOH HOH B . H 4 HOH 7 207 103 HOH HOH B . H 4 HOH 8 208 97 HOH HOH B . H 4 HOH 9 209 3 HOH HOH B . H 4 HOH 10 210 32 HOH HOH B . H 4 HOH 11 211 159 HOH HOH B . H 4 HOH 12 212 153 HOH HOH B . H 4 HOH 13 213 80 HOH HOH B . H 4 HOH 14 214 110 HOH HOH B . H 4 HOH 15 215 154 HOH HOH B . H 4 HOH 16 216 2 HOH HOH B . H 4 HOH 17 217 181 HOH HOH B . H 4 HOH 18 218 27 HOH HOH B . H 4 HOH 19 219 30 HOH HOH B . H 4 HOH 20 220 127 HOH HOH B . H 4 HOH 21 221 79 HOH HOH B . H 4 HOH 22 222 117 HOH HOH B . H 4 HOH 23 223 39 HOH HOH B . H 4 HOH 24 224 234 HOH HOH B . H 4 HOH 25 225 71 HOH HOH B . H 4 HOH 26 226 65 HOH HOH B . H 4 HOH 27 227 180 HOH HOH B . H 4 HOH 28 228 48 HOH HOH B . H 4 HOH 29 229 236 HOH HOH B . H 4 HOH 30 230 24 HOH HOH B . H 4 HOH 31 231 92 HOH HOH B . H 4 HOH 32 232 124 HOH HOH B . H 4 HOH 33 233 91 HOH HOH B . H 4 HOH 34 234 25 HOH HOH B . H 4 HOH 35 235 43 HOH HOH B . H 4 HOH 36 236 36 HOH HOH B . H 4 HOH 37 237 21 HOH HOH B . H 4 HOH 38 238 112 HOH HOH B . H 4 HOH 39 239 191 HOH HOH B . H 4 HOH 40 240 4 HOH HOH B . H 4 HOH 41 241 31 HOH HOH B . H 4 HOH 42 242 109 HOH HOH B . H 4 HOH 43 243 11 HOH HOH B . H 4 HOH 44 244 62 HOH HOH B . H 4 HOH 45 245 49 HOH HOH B . H 4 HOH 46 246 17 HOH HOH B . H 4 HOH 47 247 29 HOH HOH B . H 4 HOH 48 248 134 HOH HOH B . H 4 HOH 49 249 194 HOH HOH B . H 4 HOH 50 250 59 HOH HOH B . H 4 HOH 51 251 47 HOH HOH B . H 4 HOH 52 252 7 HOH HOH B . H 4 HOH 53 253 190 HOH HOH B . H 4 HOH 54 254 152 HOH HOH B . H 4 HOH 55 255 229 HOH HOH B . H 4 HOH 56 256 144 HOH HOH B . H 4 HOH 57 257 9 HOH HOH B . H 4 HOH 58 258 88 HOH HOH B . H 4 HOH 59 259 81 HOH HOH B . H 4 HOH 60 260 108 HOH HOH B . H 4 HOH 61 261 121 HOH HOH B . H 4 HOH 62 262 200 HOH HOH B . H 4 HOH 63 263 173 HOH HOH B . H 4 HOH 64 264 201 HOH HOH B . H 4 HOH 65 265 119 HOH HOH B . H 4 HOH 66 266 189 HOH HOH B . H 4 HOH 67 267 96 HOH HOH B . H 4 HOH 68 268 51 HOH HOH B . H 4 HOH 69 269 84 HOH HOH B . H 4 HOH 70 270 145 HOH HOH B . H 4 HOH 71 271 245 HOH HOH B . H 4 HOH 72 272 196 HOH HOH B . H 4 HOH 73 273 172 HOH HOH B . H 4 HOH 74 274 13 HOH HOH B . H 4 HOH 75 275 60 HOH HOH B . H 4 HOH 76 276 162 HOH HOH B . H 4 HOH 77 277 220 HOH HOH B . H 4 HOH 78 278 202 HOH HOH B . I 4 HOH 1 101 221 HOH HOH C . I 4 HOH 2 102 226 HOH HOH C . I 4 HOH 3 103 125 HOH HOH C . I 4 HOH 4 104 187 HOH HOH C . I 4 HOH 5 105 41 HOH HOH C . I 4 HOH 6 106 177 HOH HOH C . I 4 HOH 7 107 104 HOH HOH C . I 4 HOH 8 108 185 HOH HOH C . I 4 HOH 9 109 192 HOH HOH C . I 4 HOH 10 110 26 HOH HOH C . I 4 HOH 11 111 165 HOH HOH C . I 4 HOH 12 112 8 HOH HOH C . I 4 HOH 13 113 58 HOH HOH C . I 4 HOH 14 114 76 HOH HOH C . I 4 HOH 15 115 98 HOH HOH C . I 4 HOH 16 116 85 HOH HOH C . I 4 HOH 17 117 5 HOH HOH C . I 4 HOH 18 118 50 HOH HOH C . I 4 HOH 19 119 113 HOH HOH C . I 4 HOH 20 120 54 HOH HOH C . I 4 HOH 21 121 123 HOH HOH C . I 4 HOH 22 122 63 HOH HOH C . I 4 HOH 23 123 45 HOH HOH C . I 4 HOH 24 124 12 HOH HOH C . I 4 HOH 25 125 147 HOH HOH C . I 4 HOH 26 126 167 HOH HOH C . I 4 HOH 27 127 23 HOH HOH C . I 4 HOH 28 128 19 HOH HOH C . I 4 HOH 29 129 6 HOH HOH C . I 4 HOH 30 130 195 HOH HOH C . I 4 HOH 31 131 235 HOH HOH C . I 4 HOH 32 132 126 HOH HOH C . I 4 HOH 33 133 212 HOH HOH C . I 4 HOH 34 134 141 HOH HOH C . I 4 HOH 35 135 228 HOH HOH C . I 4 HOH 36 136 209 HOH HOH C . I 4 HOH 37 137 72 HOH HOH C . I 4 HOH 38 138 170 HOH HOH C . I 4 HOH 39 139 148 HOH HOH C . I 4 HOH 40 140 193 HOH HOH C . I 4 HOH 41 141 150 HOH HOH C . I 4 HOH 42 142 239 HOH HOH C . I 4 HOH 43 143 129 HOH HOH C . I 4 HOH 44 144 241 HOH HOH C . I 4 HOH 45 145 242 HOH HOH C . I 4 HOH 46 146 184 HOH HOH C . I 4 HOH 47 147 38 HOH HOH C . I 4 HOH 48 148 86 HOH HOH C . I 4 HOH 49 149 175 HOH HOH C . I 4 HOH 50 150 230 HOH HOH C . I 4 HOH 51 151 149 HOH HOH C . I 4 HOH 52 152 151 HOH HOH C . I 4 HOH 53 153 166 HOH HOH C . I 4 HOH 54 154 216 HOH HOH C . I 4 HOH 55 155 52 HOH HOH C . I 4 HOH 56 156 219 HOH HOH C . J 4 HOH 1 201 186 HOH HOH D . J 4 HOH 2 202 158 HOH HOH D . J 4 HOH 3 203 61 HOH HOH D . J 4 HOH 4 204 57 HOH HOH D . J 4 HOH 5 205 100 HOH HOH D . J 4 HOH 6 206 246 HOH HOH D . J 4 HOH 7 207 132 HOH HOH D . J 4 HOH 8 208 243 HOH HOH D . J 4 HOH 9 209 105 HOH HOH D . J 4 HOH 10 210 18 HOH HOH D . J 4 HOH 11 211 67 HOH HOH D . J 4 HOH 12 212 44 HOH HOH D . J 4 HOH 13 213 244 HOH HOH D . J 4 HOH 14 214 222 HOH HOH D . J 4 HOH 15 215 56 HOH HOH D . J 4 HOH 16 216 102 HOH HOH D . J 4 HOH 17 217 140 HOH HOH D . J 4 HOH 18 218 69 HOH HOH D . J 4 HOH 19 219 213 HOH HOH D . J 4 HOH 20 220 197 HOH HOH D . J 4 HOH 21 221 137 HOH HOH D . J 4 HOH 22 222 20 HOH HOH D . J 4 HOH 23 223 217 HOH HOH D . J 4 HOH 24 224 107 HOH HOH D . J 4 HOH 25 225 15 HOH HOH D . J 4 HOH 26 226 40 HOH HOH D . J 4 HOH 27 227 82 HOH HOH D . J 4 HOH 28 228 215 HOH HOH D . J 4 HOH 29 229 136 HOH HOH D . J 4 HOH 30 230 42 HOH HOH D . J 4 HOH 31 231 169 HOH HOH D . J 4 HOH 32 232 160 HOH HOH D . J 4 HOH 33 233 203 HOH HOH D . J 4 HOH 34 234 199 HOH HOH D . J 4 HOH 35 235 74 HOH HOH D . J 4 HOH 36 236 224 HOH HOH D . J 4 HOH 37 237 238 HOH HOH D . J 4 HOH 38 238 157 HOH HOH D . J 4 HOH 39 239 14 HOH HOH D . J 4 HOH 40 240 168 HOH HOH D . J 4 HOH 41 241 206 HOH HOH D . J 4 HOH 42 242 89 HOH HOH D . J 4 HOH 43 243 223 HOH HOH D . J 4 HOH 44 244 204 HOH HOH D . J 4 HOH 45 245 225 HOH HOH D . J 4 HOH 46 246 210 HOH HOH D . J 4 HOH 47 247 83 HOH HOH D . J 4 HOH 48 248 28 HOH HOH D . J 4 HOH 49 249 182 HOH HOH D . J 4 HOH 50 250 164 HOH HOH D . J 4 HOH 51 251 174 HOH HOH D . J 4 HOH 52 252 171 HOH HOH D . J 4 HOH 53 253 146 HOH HOH D . J 4 HOH 54 254 183 HOH HOH D . J 4 HOH 55 255 233 HOH HOH D . J 4 HOH 56 256 176 HOH HOH D . J 4 HOH 57 257 130 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4040 ? 1 MORE -4 ? 1 'SSA (A^2)' 5240 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id C _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 111 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id D _pdbx_struct_conn_angle.ptnr1_label_comp_id U _pdbx_struct_conn_angle.ptnr1_label_seq_id 6 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id D _pdbx_struct_conn_angle.ptnr1_auth_comp_id U _pdbx_struct_conn_angle.ptnr1_auth_seq_id 6 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id F _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id D _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 101 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id D _pdbx_struct_conn_angle.ptnr3_label_comp_id C _pdbx_struct_conn_angle.ptnr3_label_seq_id 7 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id D _pdbx_struct_conn_angle.ptnr3_auth_comp_id C _pdbx_struct_conn_angle.ptnr3_auth_seq_id 7 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 119.5 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-14 2 'Structure model' 1 1 2017-07-12 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 2 0 2022-06-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' software 3 4 'Structure model' chem_comp 4 4 'Structure model' database_2 5 4 'Structure model' entity_poly # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_software.classification' 5 4 'Structure model' '_chem_comp.mon_nstd_flag' 6 4 'Structure model' '_chem_comp.type' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' 9 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? v714 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? SHELXE ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H42 B C 7 ? ? HN42 B NCO 101 ? ? 1.24 2 1 O C HOH 142 ? ? O C HOH 145 ? ? 1.99 3 1 O D HOH 241 ? ? O D HOH 246 ? ? 1.99 4 1 O C HOH 151 ? ? O C HOH 153 ? ? 2.03 5 1 O C HOH 142 ? ? O C HOH 144 ? ? 2.03 6 1 O C HOH 133 ? ? O C HOH 143 ? ? 2.06 7 1 O C HOH 129 ? ? O C HOH 133 ? ? 2.06 8 1 O C HOH 131 ? ? O D HOH 251 ? ? 2.08 9 1 O B HOH 212 ? ? O B HOH 252 ? ? 2.12 10 1 O C HOH 152 ? ? O C HOH 154 ? ? 2.13 11 1 O B HOH 211 ? ? O B HOH 215 ? ? 2.19 12 1 O C HOH 118 ? ? O C HOH 152 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O C HOH 153 ? ? 1_555 O C HOH 153 ? ? 2_657 1.72 2 1 O A HOH 121 ? ? 1_555 O D HOH 232 ? ? 3_455 1.94 3 1 O C HOH 139 ? ? 1_555 O C HOH 153 ? ? 2_657 1.98 4 1 O A HOH 134 ? ? 1_555 O D HOH 243 ? ? 4_546 2.02 5 1 O A HOH 110 ? ? 1_555 O A HOH 110 ? ? 2_556 2.02 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 155 ? 6.42 . 2 1 O ? A HOH 156 ? 6.66 . 3 1 O ? B HOH 278 ? 6.11 . # _ndb_struct_conf_na.entry_id 5V2H _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B CBV 1 1_555 A G 8 1_555 0.112 -0.114 0.204 0.783 -8.508 -2.421 1 B_CBV1:G8_A B 1 ? A 8 ? 19 1 1 B G 2 1_555 A C 7 1_555 -0.204 -0.171 0.149 3.420 -16.815 -1.405 2 B_G2:C7_A B 2 ? A 7 ? 19 1 1 B A 3 1_555 A U 6 1_555 0.065 -0.110 0.186 5.511 -16.465 -2.868 3 B_A3:U6_A B 3 ? A 6 ? 20 1 1 B A 4 1_555 A ZTH 5 1_555 0.086 0.994 -0.176 10.594 -1.622 175.595 4 B_A4:ZTH5_A B 4 ? A 5 ? 21 ? 1 B ZTH 5 1_555 A A 4 1_555 -0.082 -1.160 0.103 -5.578 -2.105 -169.469 5 B_ZTH5:A4_A B 5 ? A 4 ? 21 ? 1 B U 6 1_555 A A 3 1_555 -0.074 -0.063 0.151 -1.453 -12.670 -4.863 6 B_U6:A3_A B 6 ? A 3 ? 20 1 1 B C 7 1_555 A G 2 1_555 0.184 -0.143 0.060 3.613 -17.458 -1.037 7 B_C7:G2_A B 7 ? A 2 ? 19 1 1 B G 8 1_555 A CBV 1 1_555 -0.162 -0.160 0.218 5.031 -9.802 -2.469 8 B_G8:CBV1_A B 8 ? A 1 ? 19 1 1 C CBV 1 1_555 D G 8 1_555 0.249 -0.158 0.078 3.420 -14.555 -1.528 9 C_CBV1:G8_D C 1 ? D 8 ? 19 1 1 C G 2 1_555 D C 7 1_555 -0.374 -0.204 -0.006 -6.835 -21.929 0.445 10 C_G2:C7_D C 2 ? D 7 ? 19 1 1 C A 3 1_555 D U 6 1_555 0.120 -0.128 0.172 -3.522 -16.898 0.035 11 C_A3:U6_D C 3 ? D 6 ? 20 1 1 C A 4 1_555 D ZTH 5 1_555 0.103 1.083 -0.168 7.569 -4.660 174.517 12 C_A4:ZTH5_D C 4 ? D 5 ? 21 ? 1 C ZTH 5 1_555 D A 4 1_555 -0.124 -1.084 0.079 -8.809 2.706 -173.811 13 C_ZTH5:A4_D C 5 ? D 4 ? 21 ? 1 C U 6 1_555 D A 3 1_555 -0.144 -0.124 0.177 2.099 -15.970 1.079 14 C_U6:A3_D C 6 ? D 3 ? 20 1 1 C C 7 1_555 D G 2 1_555 0.278 -0.160 -0.010 7.645 -18.480 -0.264 15 C_C7:G2_D C 7 ? D 2 ? 19 1 1 C G 8 1_555 D CBV 1 1_555 -0.183 -0.151 0.128 -0.329 -14.074 -1.651 16 C_G8:CBV1_D C 8 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B CBV 1 1_555 A G 8 1_555 B G 2 1_555 A C 7 1_555 -0.482 -1.448 3.080 -2.431 11.023 30.101 -4.346 0.491 2.442 20.348 4.487 32.102 1 BB_CBV1G2:C7G8_AA B 1 ? A 8 ? B 2 ? A 7 ? 1 B G 2 1_555 A C 7 1_555 B A 3 1_555 A U 6 1_555 -0.271 -0.768 3.189 -0.500 7.206 35.663 -2.188 0.368 2.986 11.619 0.806 36.364 2 BB_G2A3:U6C7_AA B 2 ? A 7 ? B 3 ? A 6 ? 1 B A 3 1_555 A U 6 1_555 B A 4 1_555 A ZTH 5 1_555 1.299 -2.859 3.450 -7.641 8.606 -74.774 2.045 0.803 3.811 -7.047 -6.256 -75.527 3 BB_A3A4:ZTH5U6_AA B 3 ? A 6 ? B 4 ? A 5 ? 1 B A 4 1_555 A ZTH 5 1_555 B ZTH 5 1_555 A A 4 1_555 4.016 -0.479 -0.594 93.471 -149.350 157.678 -0.268 -2.026 -0.092 -74.706 -46.755 179.262 4 BB_A4ZTH5:A4ZTH5_AA B 4 ? A 5 ? B 5 ? A 4 ? 1 B ZTH 5 1_555 A A 4 1_555 B U 6 1_555 A A 3 1_555 -4.451 0.673 1.287 -134.960 -107.613 -91.696 -0.327 -2.240 -1.205 54.456 -68.295 -174.855 5 BB_ZTH5U6:A3A4_AA B 5 ? A 4 ? B 6 ? A 3 ? 1 B U 6 1_555 A A 3 1_555 B C 7 1_555 A G 2 1_555 0.526 -0.863 3.134 0.931 7.264 34.853 -2.401 -0.735 2.914 11.964 -1.534 35.590 6 BB_U6C7:G2A3_AA B 6 ? A 3 ? B 7 ? A 2 ? 1 B C 7 1_555 A G 2 1_555 B G 8 1_555 A CBV 1 1_555 0.227 -1.580 3.110 -0.264 12.365 29.979 -4.710 -0.447 2.294 22.724 0.485 32.376 7 BB_C7G8:CBV1G2_AA B 7 ? A 2 ? B 8 ? A 1 ? 1 B G 8 1_555 A CBV 1 1_555 C CBV 1 1_555 D G 8 1_555 0.201 -1.575 3.276 -0.182 0.636 48.068 -1.983 -0.262 3.255 0.781 0.223 48.072 8 BC_G8CBV1:G8CBV1_DA B 8 ? A 1 ? C 1 ? D 8 ? 1 C CBV 1 1_555 D G 8 1_555 C G 2 1_555 D C 7 1_555 0.314 -1.546 3.243 0.685 18.396 32.226 -4.608 -0.414 2.095 30.258 -1.128 36.991 9 CC_CBV1G2:C7G8_DD C 1 ? D 8 ? C 2 ? D 7 ? 1 C G 2 1_555 D C 7 1_555 C A 3 1_555 D U 6 1_555 0.148 -0.958 3.131 0.422 5.688 35.038 -2.350 -0.185 2.945 9.370 -0.695 35.485 10 CC_G2A3:U6C7_DD C 2 ? D 7 ? C 3 ? D 6 ? 1 C A 3 1_555 D U 6 1_555 C A 4 1_555 D ZTH 5 1_555 1.403 -3.406 3.350 -4.441 9.028 -79.514 2.389 0.964 3.716 -7.032 -3.459 -80.043 11 CC_A3A4:ZTH5U6_DD C 3 ? D 6 ? C 4 ? D 5 ? 1 C A 4 1_555 D ZTH 5 1_555 C ZTH 5 1_555 D A 4 1_555 -3.921 1.021 0.105 -82.686 157.717 -168.468 -0.509 -1.960 -0.169 -78.863 -41.345 -179.807 12 CC_A4ZTH5:A4ZTH5_DD C 4 ? D 5 ? C 5 ? D 4 ? 1 C ZTH 5 1_555 D A 4 1_555 C U 6 1_555 D A 3 1_555 -4.722 0.423 1.384 -134.148 -106.489 -101.546 -0.180 -2.404 -1.095 53.854 -67.842 -174.487 13 CC_ZTH5U6:A3A4_DD C 5 ? D 4 ? C 6 ? D 3 ? 1 C U 6 1_555 D A 3 1_555 C C 7 1_555 D G 2 1_555 -0.396 -1.216 3.098 -0.742 4.640 32.679 -2.867 0.580 2.911 8.194 1.310 33.006 14 CC_U6C7:G2A3_DD C 6 ? D 3 ? C 7 ? D 2 ? 1 C C 7 1_555 D G 2 1_555 C G 8 1_555 D CBV 1 1_555 0.056 -1.766 3.230 -0.511 16.024 31.082 -5.048 -0.160 2.095 27.713 0.884 34.883 15 CC_C7G8:CBV1G2_DD C 7 ? D 2 ? C 8 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 'MAGNESIUM ION' MG 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 #