data_5XI8 # _entry.id 5XI8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.288 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5XI8 WWPDB D_1300003591 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XI8 _pdbx_database_status.recvd_initial_deposition_date 2017-04-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tanaka, Y.' 1 ? 'Tsukazaki, T.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Mol. Microbiol.' _citation.journal_id_ASTM MOMIEE _citation.journal_id_CSD 2007 _citation.journal_id_ISSN 1365-2958 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 106 _citation.language ? _citation.page_first 760 _citation.page_last 776 _citation.title ;The TPR domain of BepA is required for productive interaction with substrate proteins and the beta-barrel assembly machinery complex. ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1111/mmi.13844 _citation.pdbx_database_id_PubMed 28960545 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Daimon, Y.' 1 primary 'Iwama-Masui, C.' 2 primary 'Tanaka, Y.' 3 primary 'Shiota, T.' 4 primary 'Suzuki, T.' 5 primary 'Miyazaki, R.' 6 primary 'Sakurada, H.' 7 primary 'Lithgow, T.' 8 primary 'Dohmae, N.' 9 primary 'Mori, H.' 10 primary 'Tsukazaki, T.' 11 primary 'Narita, S.I.' 12 primary 'Akiyama, Y.' 13 # _cell.length_a 103.963 _cell.length_b 103.963 _cell.length_c 81.491 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 5XI8 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'H 3 2' _symmetry.entry_id 5XI8 _symmetry.Int_Tables_number 155 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Beta-barrel assembly-enhancing protease' 19463.230 1 3.4.-.- 'L450(MSE)' 'UNP residues 310-482' ? 2 water nat water 18.015 177 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSAAQYGRALQA(MSE)EANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLA NAYLQGGQPQEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISL(MSE)SSASSQVKL GSLQQARYDARIDQLRQLQERFK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSAAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYL QGGQPQEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLMSSASSQVKLGSLQQARY DARIDQLRQLQERFK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ALA n 1 4 ALA n 1 5 GLN n 1 6 TYR n 1 7 GLY n 1 8 ARG n 1 9 ALA n 1 10 LEU n 1 11 GLN n 1 12 ALA n 1 13 MSE n 1 14 GLU n 1 15 ALA n 1 16 ASN n 1 17 LYS n 1 18 TYR n 1 19 ASP n 1 20 GLU n 1 21 ALA n 1 22 ARG n 1 23 LYS n 1 24 THR n 1 25 LEU n 1 26 GLN n 1 27 PRO n 1 28 LEU n 1 29 LEU n 1 30 ALA n 1 31 ALA n 1 32 GLU n 1 33 PRO n 1 34 GLY n 1 35 ASN n 1 36 ALA n 1 37 TRP n 1 38 TYR n 1 39 LEU n 1 40 ASP n 1 41 LEU n 1 42 ALA n 1 43 THR n 1 44 ASP n 1 45 ILE n 1 46 ASP n 1 47 LEU n 1 48 GLY n 1 49 GLN n 1 50 ASN n 1 51 LYS n 1 52 ALA n 1 53 ASN n 1 54 GLU n 1 55 ALA n 1 56 ILE n 1 57 ASN n 1 58 ARG n 1 59 LEU n 1 60 LYS n 1 61 ASN n 1 62 ALA n 1 63 ARG n 1 64 ASP n 1 65 LEU n 1 66 ARG n 1 67 THR n 1 68 ASN n 1 69 PRO n 1 70 VAL n 1 71 LEU n 1 72 GLN n 1 73 LEU n 1 74 ASN n 1 75 LEU n 1 76 ALA n 1 77 ASN n 1 78 ALA n 1 79 TYR n 1 80 LEU n 1 81 GLN n 1 82 GLY n 1 83 GLY n 1 84 GLN n 1 85 PRO n 1 86 GLN n 1 87 GLU n 1 88 ALA n 1 89 ALA n 1 90 ASN n 1 91 ILE n 1 92 LEU n 1 93 ASN n 1 94 ARG n 1 95 TYR n 1 96 THR n 1 97 PHE n 1 98 ASN n 1 99 ASN n 1 100 LYS n 1 101 ASP n 1 102 ASP n 1 103 SER n 1 104 ASN n 1 105 GLY n 1 106 TRP n 1 107 ASP n 1 108 LEU n 1 109 LEU n 1 110 ALA n 1 111 GLN n 1 112 ALA n 1 113 GLU n 1 114 ALA n 1 115 ALA n 1 116 LEU n 1 117 ASN n 1 118 ASN n 1 119 ARG n 1 120 ASP n 1 121 GLN n 1 122 GLU n 1 123 LEU n 1 124 ALA n 1 125 ALA n 1 126 ARG n 1 127 ALA n 1 128 GLU n 1 129 GLY n 1 130 TYR n 1 131 ALA n 1 132 LEU n 1 133 ALA n 1 134 GLY n 1 135 ARG n 1 136 LEU n 1 137 ASP n 1 138 GLN n 1 139 ALA n 1 140 ILE n 1 141 SER n 1 142 LEU n 1 143 MSE n 1 144 SER n 1 145 SER n 1 146 ALA n 1 147 SER n 1 148 SER n 1 149 GLN n 1 150 VAL n 1 151 LYS n 1 152 LEU n 1 153 GLY n 1 154 SER n 1 155 LEU n 1 156 GLN n 1 157 GLN n 1 158 ALA n 1 159 ARG n 1 160 TYR n 1 161 ASP n 1 162 ALA n 1 163 ARG n 1 164 ILE n 1 165 ASP n 1 166 GLN n 1 167 LEU n 1 168 ARG n 1 169 GLN n 1 170 LEU n 1 171 GLN n 1 172 GLU n 1 173 ARG n 1 174 PHE n 1 175 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 175 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'bepA, yfgC, b2494, JW2479' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli (strain K12)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli KRX' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 1452720 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain KRX _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BEPA_ECOLI _struct_ref.pdbx_db_accession P66948 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAQYGRALQAMEANKYDEARKTLQPLLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQG GQPQEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLLSSASSQVKLGSLQQARYDA RIDQLRQLQERFK ; _struct_ref.pdbx_align_begin 310 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5XI8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P66948 _struct_ref_seq.db_align_beg 310 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 482 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 310 _struct_ref_seq.pdbx_auth_seq_align_end 482 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5XI8 GLY A 1 ? UNP P66948 ? ? 'expression tag' 308 1 1 5XI8 SER A 2 ? UNP P66948 ? ? 'expression tag' 309 2 1 5XI8 MSE A 143 ? UNP P66948 LEU 450 'engineered mutation' 450 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XI8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.51 _exptl_crystal.description 'THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.579 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.9 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '32% PEG 4000, ammonium acetate, KH2PO4, 2% PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-12-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9787 1.0 2 0.9794 1.0 3 0.9900 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-1A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '0.9787, 0.9794, 0.9900' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-1A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.entry_id 5XI8 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 36176 _reflns.number_all ? _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rmerge_I_obs 0.272 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.300 _reflns.B_iso_Wilson_estimate 18.320 _reflns.pdbx_redundancy 38.100 _reflns.pdbx_Rrim_I_all 0.277 _reflns.pdbx_Rpim_I_all 0.047 _reflns.pdbx_CC_half ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 716414 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared 1.330 _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.700 1.730 ? ? ? ? 1.001 ? ? 0.384 20.700 ? ? ? 942 ? ? ? ? 100.000 1.025 0.219 0.816 1 2 1.730 1.760 ? ? ? ? 0.993 ? ? 13.912 29.000 ? ? ? 919 ? ? ? ? 100.000 1.010 0.188 0.895 1 3 1.760 1.790 ? ? ? ? 0.896 ? ? 0.418 34.500 ? ? ? 933 ? ? ? ? 100.000 0.910 0.156 0.922 1 4 1.790 1.830 ? ? ? ? 0.894 ? ? 0.612 38.700 ? ? ? 935 ? ? ? ? 100.000 0.905 0.142 0.950 1 5 1.830 1.870 ? ? ? ? 0.617 ? ? 0.404 40.700 ? ? ? 912 ? ? ? ? 100.000 0.625 0.097 0.981 1 6 1.870 1.910 ? ? ? ? 0.564 ? ? 0.439 41.300 ? ? ? 937 ? ? ? ? 100.000 0.571 0.089 0.981 1 7 1.910 1.960 ? ? ? ? 0.469 ? ? 0.470 41.600 ? ? ? 931 ? ? ? ? 100.000 0.475 0.073 0.984 1 8 1.960 2.020 ? ? ? ? 0.363 ? ? 0.413 41.900 ? ? ? 935 ? ? ? ? 100.000 0.368 0.057 0.990 1 9 2.020 2.070 ? ? ? ? 0.337 ? ? 0.472 41.400 ? ? ? 937 ? ? ? ? 100.000 0.341 0.053 0.993 1 10 2.070 2.140 ? ? ? ? 0.270 ? ? 0.522 41.300 ? ? ? 932 ? ? ? ? 100.000 0.274 0.042 0.995 1 11 2.140 2.220 ? ? ? ? 0.207 ? ? 0.511 41.100 ? ? ? 931 ? ? ? ? 100.000 0.209 0.033 0.996 1 12 2.220 2.310 ? ? ? ? 0.187 ? ? 0.628 40.100 ? ? ? 935 ? ? ? ? 100.000 0.189 0.030 0.995 1 13 2.310 2.410 ? ? ? ? 0.150 ? ? 0.613 39.600 ? ? ? 940 ? ? ? ? 100.000 0.151 0.024 0.998 1 14 2.410 2.540 ? ? ? ? 0.138 ? ? 0.699 37.900 ? ? ? 963 ? ? ? ? 100.000 0.140 0.023 0.997 1 15 2.540 2.700 ? ? ? ? 0.801 ? ? 1.098 34.400 ? ? ? 922 ? ? ? ? 100.000 0.815 0.145 0.998 1 16 2.700 2.910 ? ? ? ? 0.103 ? ? 0.833 38.500 ? ? ? 944 ? ? ? ? 100.000 0.105 0.017 0.998 1 17 2.910 3.200 ? ? ? ? 0.083 ? ? 0.966 36.800 ? ? ? 937 ? ? ? ? 100.000 0.084 0.014 0.999 1 18 3.200 3.660 ? ? ? ? 0.070 ? ? 1.233 41.000 ? ? ? 969 ? ? ? ? 100.000 0.071 0.011 0.999 1 19 3.660 4.610 ? ? ? ? 0.061 ? ? 1.563 42.300 ? ? ? 945 ? ? ? ? 100.000 0.062 0.010 0.999 1 20 4.610 50.000 ? ? ? ? 0.066 ? ? 3.473 38.800 ? ? ? 1007 ? ? ? ? 99.900 0.067 0.011 0.998 # _refine.entry_id 5XI8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.7000 _refine.ls_d_res_low 37.1210 _refine.pdbx_ls_sigma_F 1.410 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.9800 _refine.ls_number_reflns_obs 36176 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details 'THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1663 _refine.ls_R_factor_R_work 0.1632 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1940 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0300 _refine.ls_number_reflns_R_free 3629 _refine.ls_number_reflns_R_work 32547 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 22.6603 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 75.500 _refine.B_iso_min 4.730 _refine.pdbx_overall_phase_error 17.9900 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.7000 _refine_hist.d_res_low 37.1210 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 177 _refine_hist.number_atoms_total 1539 _refine_hist.pdbx_number_residues_total 175 _refine_hist.pdbx_B_iso_mean_solvent 31.37 _refine_hist.pdbx_number_atoms_protein 1362 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1394 0.008 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1886 0.979 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 203 0.042 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 260 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 1188 5.902 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 1.7000 1.7224 26 100.0000 1251 . 0.3011 0.3061 . 141 0.0000 1392 . 'X-RAY DIFFRACTION' . 1.7224 1.7460 26 100.0000 1264 . 0.2458 0.2738 . 137 0.0000 1401 . 'X-RAY DIFFRACTION' . 1.7460 1.7709 26 100.0000 1265 . 0.2456 0.2855 . 145 0.0000 1410 . 'X-RAY DIFFRACTION' . 1.7709 1.7974 26 100.0000 1232 . 0.2098 0.2844 . 137 0.0000 1369 . 'X-RAY DIFFRACTION' . 1.7974 1.8254 26 100.0000 1248 . 0.1975 0.2503 . 137 0.0000 1385 . 'X-RAY DIFFRACTION' . 1.8254 1.8554 26 100.0000 1247 . 0.1895 0.2335 . 140 0.0000 1387 . 'X-RAY DIFFRACTION' . 1.8554 1.8874 26 100.0000 1287 . 0.1897 0.2359 . 143 0.0000 1430 . 'X-RAY DIFFRACTION' . 1.8874 1.9217 26 100.0000 1232 . 0.2010 0.2391 . 139 0.0000 1371 . 'X-RAY DIFFRACTION' . 1.9217 1.9586 26 100.0000 1225 . 0.1713 0.1908 . 134 0.0000 1359 . 'X-RAY DIFFRACTION' . 1.9586 1.9986 26 100.0000 1276 . 0.1659 0.1890 . 144 0.0000 1420 . 'X-RAY DIFFRACTION' . 1.9986 2.0421 26 100.0000 1227 . 0.1650 0.1912 . 135 0.0000 1362 . 'X-RAY DIFFRACTION' . 2.0421 2.0896 26 100.0000 1259 . 0.1635 0.1896 . 142 0.0000 1401 . 'X-RAY DIFFRACTION' . 2.0896 2.1418 26 100.0000 1261 . 0.1472 0.1516 . 138 0.0000 1399 . 'X-RAY DIFFRACTION' . 2.1418 2.1997 26 100.0000 1266 . 0.1335 0.1704 . 142 0.0000 1408 . 'X-RAY DIFFRACTION' . 2.1997 2.2644 26 100.0000 1239 . 0.1509 0.1852 . 138 0.0000 1377 . 'X-RAY DIFFRACTION' . 2.2644 2.3375 26 100.0000 1252 . 0.1355 0.1740 . 137 0.0000 1389 . 'X-RAY DIFFRACTION' . 2.3375 2.4210 26 100.0000 1247 . 0.1529 0.1973 . 138 0.0000 1385 . 'X-RAY DIFFRACTION' . 2.4210 2.5180 26 100.0000 1260 . 0.1677 0.1767 . 141 0.0000 1401 . 'X-RAY DIFFRACTION' . 2.5180 2.6325 26 100.0000 1262 . 0.1661 0.2174 . 139 0.0000 1401 . 'X-RAY DIFFRACTION' . 2.6325 2.7713 26 100.0000 1214 . 0.1529 0.2067 . 141 0.0000 1355 . 'X-RAY DIFFRACTION' . 2.7713 2.9448 26 100.0000 1270 . 0.1643 0.2284 . 136 0.0000 1406 . 'X-RAY DIFFRACTION' . 2.9448 3.1721 26 100.0000 1253 . 0.1653 0.2346 . 140 0.0000 1393 . 'X-RAY DIFFRACTION' . 3.1721 3.4911 26 100.0000 1262 . 0.1472 0.1767 . 141 0.0000 1403 . 'X-RAY DIFFRACTION' . 3.4911 3.9958 26 100.0000 1245 . 0.1435 0.1723 . 139 0.0000 1384 . 'X-RAY DIFFRACTION' . 3.9958 5.0323 26 100.0000 1249 . 0.1490 0.1644 . 140 0.0000 1389 . 'X-RAY DIFFRACTION' . 5.0323 37.1300 26 100.0000 1254 . 0.1735 0.1533 . 145 0.0000 1399 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5XI8 _struct.title 'Structure and function of the TPR domain' _struct.pdbx_descriptor 'Beta-barrel assembly-enhancing protease (E.C.3.4.-.-)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XI8 _struct_keywords.text 'membrane protein, TPR domain, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 1 ? ALA A 15 ? GLY A 308 ALA A 322 1 ? 15 HELX_P HELX_P2 AA2 LYS A 17 ? GLU A 32 ? LYS A 324 GLU A 339 1 ? 16 HELX_P HELX_P3 AA3 ASN A 35 ? GLN A 49 ? ASN A 342 GLN A 356 1 ? 15 HELX_P HELX_P4 AA4 LYS A 51 ? ASN A 61 ? LYS A 358 ASN A 368 1 ? 11 HELX_P HELX_P5 AA5 ALA A 62 ? THR A 67 ? ALA A 369 THR A 374 5 ? 6 HELX_P HELX_P6 AA6 ASN A 68 ? GLY A 82 ? ASN A 375 GLY A 389 1 ? 15 HELX_P HELX_P7 AA7 GLN A 84 ? ASN A 99 ? GLN A 391 ASN A 406 1 ? 16 HELX_P HELX_P8 AA8 ASP A 102 ? LEU A 116 ? ASP A 409 LEU A 423 1 ? 15 HELX_P HELX_P9 AA9 ASN A 118 ? ALA A 133 ? ASN A 425 ALA A 440 1 ? 16 HELX_P HELX_P10 AB1 ARG A 135 ? VAL A 150 ? ARG A 442 VAL A 457 1 ? 16 HELX_P HELX_P11 AB2 SER A 154 ? ARG A 173 ? SER A 461 ARG A 480 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ALA 12 C ? ? ? 1_555 A MSE 13 N A ? A ALA 319 A MSE 320 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale both ? A ALA 12 C ? ? ? 1_555 A MSE 13 N B ? A ALA 319 A MSE 320 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale both ? A MSE 13 C A ? ? 1_555 A GLU 14 N ? ? A MSE 320 A GLU 321 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale both ? A MSE 13 C B ? ? 1_555 A GLU 14 N ? ? A MSE 320 A GLU 321 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale both ? A LEU 142 C ? ? ? 1_555 A MSE 143 N ? ? A LEU 449 A MSE 450 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale both ? A MSE 143 C ? ? ? 1_555 A SER 144 N ? ? A MSE 450 A SER 451 1_555 ? ? ? ? ? ? ? 1.342 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5XI8 _atom_sites.fract_transf_matrix[1][1] 0.009619 _atom_sites.fract_transf_matrix[1][2] 0.005553 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011107 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012271 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 308 308 GLY GLY A . n A 1 2 SER 2 309 309 SER SER A . n A 1 3 ALA 3 310 310 ALA ALA A . n A 1 4 ALA 4 311 311 ALA ALA A . n A 1 5 GLN 5 312 312 GLN GLN A . n A 1 6 TYR 6 313 313 TYR TYR A . n A 1 7 GLY 7 314 314 GLY GLY A . n A 1 8 ARG 8 315 315 ARG ARG A . n A 1 9 ALA 9 316 316 ALA ALA A . n A 1 10 LEU 10 317 317 LEU LEU A . n A 1 11 GLN 11 318 318 GLN GLN A . n A 1 12 ALA 12 319 319 ALA ALA A . n A 1 13 MSE 13 320 320 MSE MSE A . n A 1 14 GLU 14 321 321 GLU GLU A . n A 1 15 ALA 15 322 322 ALA ALA A . n A 1 16 ASN 16 323 323 ASN ASN A . n A 1 17 LYS 17 324 324 LYS LYS A . n A 1 18 TYR 18 325 325 TYR TYR A . n A 1 19 ASP 19 326 326 ASP ASP A . n A 1 20 GLU 20 327 327 GLU GLU A . n A 1 21 ALA 21 328 328 ALA ALA A . n A 1 22 ARG 22 329 329 ARG ARG A . n A 1 23 LYS 23 330 330 LYS LYS A . n A 1 24 THR 24 331 331 THR THR A . n A 1 25 LEU 25 332 332 LEU LEU A . n A 1 26 GLN 26 333 333 GLN GLN A . n A 1 27 PRO 27 334 334 PRO PRO A . n A 1 28 LEU 28 335 335 LEU LEU A . n A 1 29 LEU 29 336 336 LEU LEU A . n A 1 30 ALA 30 337 337 ALA ALA A . n A 1 31 ALA 31 338 338 ALA ALA A . n A 1 32 GLU 32 339 339 GLU GLU A . n A 1 33 PRO 33 340 340 PRO PRO A . n A 1 34 GLY 34 341 341 GLY GLY A . n A 1 35 ASN 35 342 342 ASN ASN A . n A 1 36 ALA 36 343 343 ALA ALA A . n A 1 37 TRP 37 344 344 TRP TRP A . n A 1 38 TYR 38 345 345 TYR TYR A . n A 1 39 LEU 39 346 346 LEU LEU A . n A 1 40 ASP 40 347 347 ASP ASP A . n A 1 41 LEU 41 348 348 LEU LEU A . n A 1 42 ALA 42 349 349 ALA ALA A . n A 1 43 THR 43 350 350 THR THR A . n A 1 44 ASP 44 351 351 ASP ASP A . n A 1 45 ILE 45 352 352 ILE ILE A . n A 1 46 ASP 46 353 353 ASP ASP A . n A 1 47 LEU 47 354 354 LEU LEU A . n A 1 48 GLY 48 355 355 GLY GLY A . n A 1 49 GLN 49 356 356 GLN GLN A . n A 1 50 ASN 50 357 357 ASN ASN A . n A 1 51 LYS 51 358 358 LYS LYS A . n A 1 52 ALA 52 359 359 ALA ALA A . n A 1 53 ASN 53 360 360 ASN ASN A . n A 1 54 GLU 54 361 361 GLU GLU A . n A 1 55 ALA 55 362 362 ALA ALA A . n A 1 56 ILE 56 363 363 ILE ILE A . n A 1 57 ASN 57 364 364 ASN ASN A . n A 1 58 ARG 58 365 365 ARG ARG A . n A 1 59 LEU 59 366 366 LEU LEU A . n A 1 60 LYS 60 367 367 LYS LYS A . n A 1 61 ASN 61 368 368 ASN ASN A . n A 1 62 ALA 62 369 369 ALA ALA A . n A 1 63 ARG 63 370 370 ARG ARG A . n A 1 64 ASP 64 371 371 ASP ASP A . n A 1 65 LEU 65 372 372 LEU LEU A . n A 1 66 ARG 66 373 373 ARG ARG A . n A 1 67 THR 67 374 374 THR THR A . n A 1 68 ASN 68 375 375 ASN ASN A . n A 1 69 PRO 69 376 376 PRO PRO A . n A 1 70 VAL 70 377 377 VAL VAL A . n A 1 71 LEU 71 378 378 LEU LEU A . n A 1 72 GLN 72 379 379 GLN GLN A . n A 1 73 LEU 73 380 380 LEU LEU A . n A 1 74 ASN 74 381 381 ASN ASN A . n A 1 75 LEU 75 382 382 LEU LEU A . n A 1 76 ALA 76 383 383 ALA ALA A . n A 1 77 ASN 77 384 384 ASN ASN A . n A 1 78 ALA 78 385 385 ALA ALA A . n A 1 79 TYR 79 386 386 TYR TYR A . n A 1 80 LEU 80 387 387 LEU LEU A . n A 1 81 GLN 81 388 388 GLN GLN A . n A 1 82 GLY 82 389 389 GLY GLY A . n A 1 83 GLY 83 390 390 GLY GLY A . n A 1 84 GLN 84 391 391 GLN GLN A . n A 1 85 PRO 85 392 392 PRO PRO A . n A 1 86 GLN 86 393 393 GLN GLN A . n A 1 87 GLU 87 394 394 GLU GLU A . n A 1 88 ALA 88 395 395 ALA ALA A . n A 1 89 ALA 89 396 396 ALA ALA A . n A 1 90 ASN 90 397 397 ASN ASN A . n A 1 91 ILE 91 398 398 ILE ILE A . n A 1 92 LEU 92 399 399 LEU LEU A . n A 1 93 ASN 93 400 400 ASN ASN A . n A 1 94 ARG 94 401 401 ARG ARG A . n A 1 95 TYR 95 402 402 TYR TYR A . n A 1 96 THR 96 403 403 THR THR A . n A 1 97 PHE 97 404 404 PHE PHE A . n A 1 98 ASN 98 405 405 ASN ASN A . n A 1 99 ASN 99 406 406 ASN ASN A . n A 1 100 LYS 100 407 407 LYS LYS A . n A 1 101 ASP 101 408 408 ASP ASP A . n A 1 102 ASP 102 409 409 ASP ASP A . n A 1 103 SER 103 410 410 SER SER A . n A 1 104 ASN 104 411 411 ASN ASN A . n A 1 105 GLY 105 412 412 GLY GLY A . n A 1 106 TRP 106 413 413 TRP TRP A . n A 1 107 ASP 107 414 414 ASP ASP A . n A 1 108 LEU 108 415 415 LEU LEU A . n A 1 109 LEU 109 416 416 LEU LEU A . n A 1 110 ALA 110 417 417 ALA ALA A . n A 1 111 GLN 111 418 418 GLN GLN A . n A 1 112 ALA 112 419 419 ALA ALA A . n A 1 113 GLU 113 420 420 GLU GLU A . n A 1 114 ALA 114 421 421 ALA ALA A . n A 1 115 ALA 115 422 422 ALA ALA A . n A 1 116 LEU 116 423 423 LEU LEU A . n A 1 117 ASN 117 424 424 ASN ASN A . n A 1 118 ASN 118 425 425 ASN ASN A . n A 1 119 ARG 119 426 426 ARG ARG A . n A 1 120 ASP 120 427 427 ASP ASP A . n A 1 121 GLN 121 428 428 GLN GLN A . n A 1 122 GLU 122 429 429 GLU GLU A . n A 1 123 LEU 123 430 430 LEU LEU A . n A 1 124 ALA 124 431 431 ALA ALA A . n A 1 125 ALA 125 432 432 ALA ALA A . n A 1 126 ARG 126 433 433 ARG ARG A . n A 1 127 ALA 127 434 434 ALA ALA A . n A 1 128 GLU 128 435 435 GLU GLU A . n A 1 129 GLY 129 436 436 GLY GLY A . n A 1 130 TYR 130 437 437 TYR TYR A . n A 1 131 ALA 131 438 438 ALA ALA A . n A 1 132 LEU 132 439 439 LEU LEU A . n A 1 133 ALA 133 440 440 ALA ALA A . n A 1 134 GLY 134 441 441 GLY GLY A . n A 1 135 ARG 135 442 442 ARG ARG A . n A 1 136 LEU 136 443 443 LEU LEU A . n A 1 137 ASP 137 444 444 ASP ASP A . n A 1 138 GLN 138 445 445 GLN GLN A . n A 1 139 ALA 139 446 446 ALA ALA A . n A 1 140 ILE 140 447 447 ILE ILE A . n A 1 141 SER 141 448 448 SER SER A . n A 1 142 LEU 142 449 449 LEU LEU A . n A 1 143 MSE 143 450 450 MSE MSE A . n A 1 144 SER 144 451 451 SER SER A . n A 1 145 SER 145 452 452 SER SER A . n A 1 146 ALA 146 453 453 ALA ALA A . n A 1 147 SER 147 454 454 SER SER A . n A 1 148 SER 148 455 455 SER SER A . n A 1 149 GLN 149 456 456 GLN GLN A . n A 1 150 VAL 150 457 457 VAL VAL A . n A 1 151 LYS 151 458 458 LYS LYS A . n A 1 152 LEU 152 459 459 LEU LEU A . n A 1 153 GLY 153 460 460 GLY GLY A . n A 1 154 SER 154 461 461 SER SER A . n A 1 155 LEU 155 462 462 LEU LEU A . n A 1 156 GLN 156 463 463 GLN GLN A . n A 1 157 GLN 157 464 464 GLN GLN A . n A 1 158 ALA 158 465 465 ALA ALA A . n A 1 159 ARG 159 466 466 ARG ARG A . n A 1 160 TYR 160 467 467 TYR TYR A . n A 1 161 ASP 161 468 468 ASP ASP A . n A 1 162 ALA 162 469 469 ALA ALA A . n A 1 163 ARG 163 470 470 ARG ARG A . n A 1 164 ILE 164 471 471 ILE ILE A . n A 1 165 ASP 165 472 472 ASP ASP A . n A 1 166 GLN 166 473 473 GLN GLN A . n A 1 167 LEU 167 474 474 LEU LEU A . n A 1 168 ARG 168 475 475 ARG ARG A . n A 1 169 GLN 169 476 476 GLN GLN A . n A 1 170 LEU 170 477 477 LEU LEU A . n A 1 171 GLN 171 478 478 GLN GLN A . n A 1 172 GLU 172 479 479 GLU GLU A . n A 1 173 ARG 173 480 480 ARG ARG A . n A 1 174 PHE 174 481 481 PHE PHE A . n A 1 175 LYS 175 482 482 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 501 66 HOH HOH A . B 2 HOH 2 502 44 HOH HOH A . B 2 HOH 3 503 135 HOH HOH A . B 2 HOH 4 504 79 HOH HOH A . B 2 HOH 5 505 70 HOH HOH A . B 2 HOH 6 506 110 HOH HOH A . B 2 HOH 7 507 85 HOH HOH A . B 2 HOH 8 508 83 HOH HOH A . B 2 HOH 9 509 120 HOH HOH A . B 2 HOH 10 510 78 HOH HOH A . B 2 HOH 11 511 107 HOH HOH A . B 2 HOH 12 512 170 HOH HOH A . B 2 HOH 13 513 132 HOH HOH A . B 2 HOH 14 514 27 HOH HOH A . B 2 HOH 15 515 139 HOH HOH A . B 2 HOH 16 516 160 HOH HOH A . B 2 HOH 17 517 52 HOH HOH A . B 2 HOH 18 518 151 HOH HOH A . B 2 HOH 19 519 113 HOH HOH A . B 2 HOH 20 520 60 HOH HOH A . B 2 HOH 21 521 121 HOH HOH A . B 2 HOH 22 522 39 HOH HOH A . B 2 HOH 23 523 19 HOH HOH A . B 2 HOH 24 524 62 HOH HOH A . B 2 HOH 25 525 73 HOH HOH A . B 2 HOH 26 526 20 HOH HOH A . B 2 HOH 27 527 149 HOH HOH A . B 2 HOH 28 528 6 HOH HOH A . B 2 HOH 29 529 72 HOH HOH A . B 2 HOH 30 530 172 HOH HOH A . B 2 HOH 31 531 118 HOH HOH A . B 2 HOH 32 532 131 HOH HOH A . B 2 HOH 33 533 58 HOH HOH A . B 2 HOH 34 534 82 HOH HOH A . B 2 HOH 35 535 37 HOH HOH A . B 2 HOH 36 536 9 HOH HOH A . B 2 HOH 37 537 134 HOH HOH A . B 2 HOH 38 538 24 HOH HOH A . B 2 HOH 39 539 122 HOH HOH A . B 2 HOH 40 540 3 HOH HOH A . B 2 HOH 41 541 30 HOH HOH A . B 2 HOH 42 542 106 HOH HOH A . B 2 HOH 43 543 69 HOH HOH A . B 2 HOH 44 544 98 HOH HOH A . B 2 HOH 45 545 67 HOH HOH A . B 2 HOH 46 546 38 HOH HOH A . B 2 HOH 47 547 91 HOH HOH A . B 2 HOH 48 548 59 HOH HOH A . B 2 HOH 49 549 143 HOH HOH A . B 2 HOH 50 550 13 HOH HOH A . B 2 HOH 51 551 93 HOH HOH A . B 2 HOH 52 552 14 HOH HOH A . B 2 HOH 53 553 18 HOH HOH A . B 2 HOH 54 554 22 HOH HOH A . B 2 HOH 55 555 7 HOH HOH A . B 2 HOH 56 556 88 HOH HOH A . B 2 HOH 57 557 31 HOH HOH A . B 2 HOH 58 558 119 HOH HOH A . B 2 HOH 59 559 10 HOH HOH A . B 2 HOH 60 560 164 HOH HOH A . B 2 HOH 61 561 165 HOH HOH A . B 2 HOH 62 562 158 HOH HOH A . B 2 HOH 63 563 34 HOH HOH A . B 2 HOH 64 564 35 HOH HOH A . B 2 HOH 65 565 54 HOH HOH A . B 2 HOH 66 566 21 HOH HOH A . B 2 HOH 67 567 28 HOH HOH A . B 2 HOH 68 568 32 HOH HOH A . B 2 HOH 69 569 123 HOH HOH A . B 2 HOH 70 570 76 HOH HOH A . B 2 HOH 71 571 74 HOH HOH A . B 2 HOH 72 572 129 HOH HOH A . B 2 HOH 73 573 16 HOH HOH A . B 2 HOH 74 574 47 HOH HOH A . B 2 HOH 75 575 90 HOH HOH A . B 2 HOH 76 576 148 HOH HOH A . B 2 HOH 77 577 57 HOH HOH A . B 2 HOH 78 578 94 HOH HOH A . B 2 HOH 79 579 49 HOH HOH A . B 2 HOH 80 580 61 HOH HOH A . B 2 HOH 81 581 8 HOH HOH A . B 2 HOH 82 582 144 HOH HOH A . B 2 HOH 83 583 167 HOH HOH A . B 2 HOH 84 584 96 HOH HOH A . B 2 HOH 85 585 99 HOH HOH A . B 2 HOH 86 586 25 HOH HOH A . B 2 HOH 87 587 36 HOH HOH A . B 2 HOH 88 588 50 HOH HOH A . B 2 HOH 89 589 86 HOH HOH A . B 2 HOH 90 590 26 HOH HOH A . B 2 HOH 91 591 141 HOH HOH A . B 2 HOH 92 592 75 HOH HOH A . B 2 HOH 93 593 40 HOH HOH A . B 2 HOH 94 594 23 HOH HOH A . B 2 HOH 95 595 104 HOH HOH A . B 2 HOH 96 596 12 HOH HOH A . B 2 HOH 97 597 33 HOH HOH A . B 2 HOH 98 598 15 HOH HOH A . B 2 HOH 99 599 4 HOH HOH A . B 2 HOH 100 600 97 HOH HOH A . B 2 HOH 101 601 95 HOH HOH A . B 2 HOH 102 602 92 HOH HOH A . B 2 HOH 103 603 169 HOH HOH A . B 2 HOH 104 604 41 HOH HOH A . B 2 HOH 105 605 5 HOH HOH A . B 2 HOH 106 606 174 HOH HOH A . B 2 HOH 107 607 11 HOH HOH A . B 2 HOH 108 608 77 HOH HOH A . B 2 HOH 109 609 56 HOH HOH A . B 2 HOH 110 610 1 HOH HOH A . B 2 HOH 111 611 111 HOH HOH A . B 2 HOH 112 612 102 HOH HOH A . B 2 HOH 113 613 51 HOH HOH A . B 2 HOH 114 614 68 HOH HOH A . B 2 HOH 115 615 89 HOH HOH A . B 2 HOH 116 616 156 HOH HOH A . B 2 HOH 117 617 84 HOH HOH A . B 2 HOH 118 618 125 HOH HOH A . B 2 HOH 119 619 64 HOH HOH A . B 2 HOH 120 620 2 HOH HOH A . B 2 HOH 121 621 140 HOH HOH A . B 2 HOH 122 622 115 HOH HOH A . B 2 HOH 123 623 63 HOH HOH A . B 2 HOH 124 624 133 HOH HOH A . B 2 HOH 125 625 48 HOH HOH A . B 2 HOH 126 626 128 HOH HOH A . B 2 HOH 127 627 116 HOH HOH A . B 2 HOH 128 628 53 HOH HOH A . B 2 HOH 129 629 176 HOH HOH A . B 2 HOH 130 630 161 HOH HOH A . B 2 HOH 131 631 105 HOH HOH A . B 2 HOH 132 632 45 HOH HOH A . B 2 HOH 133 633 162 HOH HOH A . B 2 HOH 134 634 166 HOH HOH A . B 2 HOH 135 635 138 HOH HOH A . B 2 HOH 136 636 29 HOH HOH A . B 2 HOH 137 637 145 HOH HOH A . B 2 HOH 138 638 71 HOH HOH A . B 2 HOH 139 639 136 HOH HOH A . B 2 HOH 140 640 42 HOH HOH A . B 2 HOH 141 641 43 HOH HOH A . B 2 HOH 142 642 157 HOH HOH A . B 2 HOH 143 643 155 HOH HOH A . B 2 HOH 144 644 171 HOH HOH A . B 2 HOH 145 645 137 HOH HOH A . B 2 HOH 146 646 177 HOH HOH A . B 2 HOH 147 647 108 HOH HOH A . B 2 HOH 148 648 159 HOH HOH A . B 2 HOH 149 649 87 HOH HOH A . B 2 HOH 150 650 117 HOH HOH A . B 2 HOH 151 651 65 HOH HOH A . B 2 HOH 152 652 142 HOH HOH A . B 2 HOH 153 653 175 HOH HOH A . B 2 HOH 154 654 112 HOH HOH A . B 2 HOH 155 655 173 HOH HOH A . B 2 HOH 156 656 109 HOH HOH A . B 2 HOH 157 657 163 HOH HOH A . B 2 HOH 158 658 114 HOH HOH A . B 2 HOH 159 659 130 HOH HOH A . B 2 HOH 160 660 46 HOH HOH A . B 2 HOH 161 661 126 HOH HOH A . B 2 HOH 162 662 168 HOH HOH A . B 2 HOH 163 663 103 HOH HOH A . B 2 HOH 164 664 152 HOH HOH A . B 2 HOH 165 665 124 HOH HOH A . B 2 HOH 166 666 146 HOH HOH A . B 2 HOH 167 667 80 HOH HOH A . B 2 HOH 168 668 127 HOH HOH A . B 2 HOH 169 669 100 HOH HOH A . B 2 HOH 170 670 154 HOH HOH A . B 2 HOH 171 671 81 HOH HOH A . B 2 HOH 172 672 101 HOH HOH A . B 2 HOH 173 673 55 HOH HOH A . B 2 HOH 174 674 150 HOH HOH A . B 2 HOH 175 675 153 HOH HOH A . B 2 HOH 176 676 147 HOH HOH A . B 2 HOH 177 677 17 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 13 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 320 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 9950 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 507 ? B HOH . 2 1 A HOH 550 ? B HOH . 3 1 A HOH 603 ? B HOH . 4 1 A HOH 641 ? B HOH . 5 1 A HOH 648 ? B HOH . 6 1 A HOH 659 ? B HOH . 7 1 A HOH 663 ? B HOH . 8 1 A HOH 670 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-18 2 'Structure model' 1 1 2017-10-25 3 'Structure model' 1 2 2017-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 2 'Structure model' '_citation_author.name' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' 6 3 'Structure model' '_citation.title' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -14.1838 -17.3019 -7.8344 0.0992 0.1661 0.0292 -0.0413 0.0340 0.0377 0.0202 0.0121 0.0198 0.0004 0.0044 -0.0147 -0.1822 -0.0816 -0.0000 -0.2260 0.2203 -0.0786 0.0100 0.1225 -0.2377 'X-RAY DIFFRACTION' 2 ? refined -5.1674 -22.8127 -12.9983 0.1246 0.1057 0.0910 0.0133 0.0022 0.0143 0.0134 0.0024 -0.0004 0.0041 -0.0238 0.0039 0.0092 -0.1207 0.0000 0.0802 0.0749 0.0048 -0.0659 0.0212 -0.0415 'X-RAY DIFFRACTION' 3 ? refined 7.5352 -22.0124 -9.2667 0.1692 -0.0616 0.4184 -0.0279 -0.0830 0.0834 0.0036 0.0017 0.0038 0.0014 0.0014 0.0024 -0.0353 -0.0219 -0.0000 0.0099 0.0313 0.0052 0.0223 -0.0275 0.0154 'X-RAY DIFFRACTION' 4 ? refined 1.5832 -36.6959 -8.0354 0.1004 0.0545 0.0738 0.0050 -0.0028 0.0089 0.0198 0.0443 0.0269 0.0237 0.0111 -0.0436 -0.0142 -0.0260 0.0000 0.0230 -0.0083 -0.0515 0.0252 -0.0210 -0.0126 'X-RAY DIFFRACTION' 5 ? refined 2.8140 -51.5843 -0.0645 0.0551 0.0395 0.0541 -0.0011 -0.0092 0.0066 -0.0057 0.0037 0.0138 0.0021 -0.0020 0.0133 0.0155 -0.0458 -0.0000 -0.0335 -0.0494 0.0015 -0.0243 -0.0931 0.0354 'X-RAY DIFFRACTION' 6 ? refined 8.4144 -50.1030 8.3690 0.0383 0.0797 0.1011 -0.0048 -0.0361 -0.0012 0.0138 0.0245 0.0027 -0.0189 -0.0060 0.0011 -0.0708 0.1765 -0.0000 -0.1216 -0.0172 -0.0808 -0.1118 -0.1340 -0.0246 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 308 A 338 ;chain 'A' and (resid 308 through 338 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 339 A 368 ;chain 'A' and (resid 339 through 368 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 369 A 375 ;chain 'A' and (resid 369 through 375 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 376 A 425 ;chain 'A' and (resid 376 through 425 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 426 A 461 ;chain 'A' and (resid 426 through 461 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 462 A 482 ;chain 'A' and (resid 462 through 482 ) ; ? ? ? ? ? # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11_2567 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 5 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 6 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? SHELXE ? ? ? . 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 373 ? ? O A HOH 501 ? ? 2.10 2 1 O A HOH 529 ? ? O A HOH 638 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 370 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLN _pdbx_validate_symm_contact.auth_seq_id_2 473 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 15_544 _pdbx_validate_symm_contact.dist 1.89 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ARG _pdbx_validate_rmsd_bond.auth_seq_id_1 370 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ARG _pdbx_validate_rmsd_bond.auth_seq_id_2 370 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.350 _pdbx_validate_rmsd_bond.bond_target_value 1.515 _pdbx_validate_rmsd_bond.bond_deviation -0.165 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A ARG 370 ? ? NE A ARG 370 ? ? CZ A ARG 370 ? ? 109.69 123.60 -13.91 1.40 N 2 1 NE A ARG 370 ? ? CZ A ARG 370 ? ? NH1 A ARG 370 ? ? 112.50 120.30 -7.80 0.50 N 3 1 NE A ARG 370 ? ? CZ A ARG 370 ? ? NH2 A ARG 370 ? ? 125.54 120.30 5.24 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 358 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -117.14 _pdbx_validate_torsion.psi 57.57 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal JSPS Japan BJP26291023 1 MEXT Japan JP15H01532 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #