data_5ZCN # _entry.id 5ZCN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5ZCN pdb_00005zcn 10.2210/pdb5zcn/pdb WWPDB D_1300006845 ? ? BMRB 36167 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of a new lasso peptide brevunsin' _pdbx_database_related.db_id 36167 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5ZCN _pdbx_database_status.recvd_initial_deposition_date 2018-02-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hemmi, H.' 1 ? 'Kodani, S.' 2 ? 'Miyake, Y.' 3 ? 'Kaweewan, I.' 4 ? 'Nakagawa, H.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Ind. Microbiol. Biotechnol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1476-5535 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 45 _citation.language ? _citation.page_first 983 _citation.page_last 992 _citation.title 'Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s10295-018-2077-6 _citation.pdbx_database_id_PubMed 30191430 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kodani, S.' 1 0000-0002-6792-1184 primary 'Hemmi, H.' 2 ? primary 'Miyake, Y.' 3 ? primary 'Kaweewan, I.' 4 ? primary 'Nakagawa, H.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description brevunsin _entity.formula_weight 2253.466 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DGMGEEFIEGLVRDSLYPPAG _entity_poly.pdbx_seq_one_letter_code_can DGMGEEFIEGLVRDSLYPPAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLY n 1 3 MET n 1 4 GLY n 1 5 GLU n 1 6 GLU n 1 7 PHE n 1 8 ILE n 1 9 GLU n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 ARG n 1 14 ASP n 1 15 SER n 1 16 LEU n 1 17 TYR n 1 18 PRO n 1 19 PRO n 1 20 ALA n 1 21 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 21 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Brevundimonas diminuta' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 293 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Novosphingobium subterraneum' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 48936 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code F4QXD9_BREDA _struct_ref.pdbx_db_accession F4QXD9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DGMGEEFIEGLVRDSLYPPAG _struct_ref.pdbx_align_begin 21 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5ZCN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 21 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession F4QXD9 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 41 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 2 isotropic 2 1 1 '2D 1H-13C HSQC' 2 isotropic 3 1 1 '2D 1H-13C HMBC' 2 isotropic 4 1 1 '2D 1H-1H TOCSY' 2 isotropic 5 1 1 '2D 1H-1H TOCSY' 1 isotropic 8 1 1 '2D DQF-COSY' 2 isotropic 7 1 1 '2D 1H-1H NOESY' 2 isotropic 6 1 1 '2D 1H-1H NOESY' 1 isotropic 9 1 1 '1D 1H' 2 isotropic 10 1 1 '1D 13C' 2 isotropic 11 1 1 DEPT135 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ND _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '6 mg/mL brevunsin, DMSO' _pdbx_nmr_sample_details.solvent_system DMSO _pdbx_nmr_sample_details.label 1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 ? 2 'AVANCE III' ? Bruker 800 ? # _pdbx_nmr_refine.entry_id 5ZCN _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5ZCN _pdbx_nmr_ensemble.conformers_calculated_total_number 300 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5ZCN _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS 1.1 'Brunger, Adams, Clore, Gros, Nilges and Read' 2 'structure calculation' CNS 1.1 'Brunger, Adams, Clore, Gros, Nilges and Read' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard 5 processing TopSpin 3.5 'Bruker Biospin' 6 collection TopSpin ? 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ZCN _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5ZCN _struct.title 'Solution NMR structure of a new lasso peptide brevunsin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ZCN _struct_keywords.text 'lasso peptide, Sphingomonas subterranea, brevunsin, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id GLU _struct_conn.ptnr2_label_seq_id 9 _struct_conn.ptnr2_label_atom_id CD _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLU _struct_conn.ptnr2_auth_seq_id 9 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5ZCN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 GLY 21 21 21 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1930 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-17 2 'Structure model' 1 1 2018-10-24 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 7 3 'Structure model' '_pdbx_nmr_software.name' 8 3 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component brevunsin _pdbx_nmr_exptl_sample.concentration 6 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mg/mL _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 10 H A GLU 6 ? ? O A SER 15 ? ? 1.55 2 15 H A GLU 6 ? ? O A SER 15 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 5 ? ? -155.95 50.72 2 1 GLU A 6 ? ? -107.18 -60.46 3 1 LEU A 11 ? ? -142.83 56.21 4 1 VAL A 12 ? ? -151.21 -84.95 5 1 ARG A 13 ? ? -179.68 -165.24 6 1 ASP A 14 ? ? -53.02 92.98 7 1 SER A 15 ? ? -62.01 -168.18 8 1 LEU A 16 ? ? -126.30 -71.20 9 1 TYR A 17 ? ? -177.58 62.41 10 2 GLU A 5 ? ? -160.55 36.51 11 2 LEU A 11 ? ? -168.83 34.49 12 2 VAL A 12 ? ? -141.70 -85.72 13 2 ARG A 13 ? ? -177.90 -165.48 14 2 ASP A 14 ? ? -52.51 93.57 15 2 SER A 15 ? ? -65.22 -162.29 16 2 LEU A 16 ? ? -110.46 -77.58 17 2 ALA A 20 ? ? -94.38 49.20 18 3 MET A 3 ? ? -160.54 29.15 19 3 GLU A 5 ? ? -171.68 39.42 20 3 GLU A 6 ? ? -105.71 -68.99 21 3 LEU A 11 ? ? -123.09 -82.83 22 3 VAL A 12 ? ? -155.63 83.57 23 3 ARG A 13 ? ? -176.26 105.65 24 3 ASP A 14 ? ? -52.81 86.12 25 3 SER A 15 ? ? -64.31 -161.96 26 3 LEU A 16 ? ? -90.60 -91.66 27 3 TYR A 17 ? ? 175.19 124.71 28 3 ALA A 20 ? ? -114.90 67.31 29 4 MET A 3 ? ? -164.79 106.06 30 4 GLU A 5 ? ? -151.54 47.24 31 4 PHE A 7 ? ? -175.55 139.38 32 4 LEU A 11 ? ? -164.04 -75.08 33 4 ARG A 13 ? ? 67.56 119.87 34 4 ASP A 14 ? ? -60.30 81.15 35 4 ALA A 20 ? ? -91.97 47.63 36 5 GLU A 5 ? ? -176.59 55.57 37 5 GLU A 6 ? ? -125.60 -54.45 38 5 GLU A 9 ? ? -67.67 -78.49 39 5 LEU A 11 ? ? -148.25 -64.06 40 5 VAL A 12 ? ? -179.34 85.74 41 5 ARG A 13 ? ? -178.00 125.72 42 5 ASP A 14 ? ? -59.29 85.15 43 5 LEU A 16 ? ? -107.24 -167.05 44 5 PRO A 18 ? ? -55.91 108.21 45 5 ALA A 20 ? ? -93.26 48.64 46 6 MET A 3 ? ? -55.76 172.80 47 6 GLU A 5 ? ? -152.65 54.33 48 6 LEU A 11 ? ? -95.75 -72.23 49 6 VAL A 12 ? ? -179.54 -37.91 50 6 ASP A 14 ? ? -58.28 84.53 51 6 SER A 15 ? ? -52.37 171.26 52 6 TYR A 17 ? ? -177.17 131.04 53 6 ALA A 20 ? ? -93.16 52.52 54 7 GLU A 5 ? ? -168.48 49.54 55 7 GLU A 6 ? ? -106.13 -68.79 56 7 GLU A 9 ? ? -86.90 47.29 57 7 LEU A 11 ? ? -122.33 -87.01 58 7 VAL A 12 ? ? -157.37 82.18 59 7 ARG A 13 ? ? -179.06 129.05 60 7 ASP A 14 ? ? -64.52 87.41 61 7 SER A 15 ? ? -54.49 -161.31 62 7 LEU A 16 ? ? -148.30 -32.14 63 8 GLU A 5 ? ? -174.10 36.07 64 8 LEU A 11 ? ? -142.96 -45.82 65 8 VAL A 12 ? ? -68.26 -165.41 66 8 ASP A 14 ? ? -49.35 91.51 67 8 SER A 15 ? ? -67.84 -169.04 68 8 PRO A 18 ? ? -52.20 106.49 69 8 ALA A 20 ? ? -96.80 38.81 70 9 MET A 3 ? ? -107.52 54.87 71 9 GLU A 5 ? ? -158.43 61.66 72 9 GLU A 6 ? ? -131.31 -48.07 73 9 PHE A 7 ? ? -173.89 140.76 74 9 ARG A 13 ? ? 70.31 120.10 75 9 ASP A 14 ? ? -58.89 85.60 76 9 SER A 15 ? ? -47.51 169.68 77 9 PRO A 18 ? ? -44.37 164.67 78 10 GLU A 5 ? ? -164.11 30.42 79 10 GLU A 6 ? ? -89.97 -71.75 80 10 GLU A 9 ? ? -73.80 -156.61 81 10 LEU A 11 ? ? -109.63 -76.62 82 10 VAL A 12 ? ? 179.42 85.55 83 10 ARG A 13 ? ? -179.66 135.89 84 10 ASP A 14 ? ? -55.42 86.12 85 10 SER A 15 ? ? -64.62 -159.81 86 10 TYR A 17 ? ? -49.17 162.11 87 11 MET A 3 ? ? 75.99 -57.37 88 11 GLU A 5 ? ? -149.21 45.31 89 11 PHE A 7 ? ? -171.46 139.77 90 11 LEU A 11 ? ? 76.27 35.07 91 11 ARG A 13 ? ? -49.18 156.31 92 11 ASP A 14 ? ? -56.02 86.29 93 11 SER A 15 ? ? -38.00 156.81 94 11 LEU A 16 ? ? -67.56 -165.18 95 11 PRO A 18 ? ? -50.27 106.54 96 11 ALA A 20 ? ? -160.07 67.68 97 12 MET A 3 ? ? 179.25 38.50 98 12 GLU A 5 ? ? -169.82 45.51 99 12 GLU A 6 ? ? -107.95 -73.66 100 12 ILE A 8 ? ? -34.52 129.56 101 12 LEU A 11 ? ? -117.94 -73.32 102 12 VAL A 12 ? ? -168.02 84.11 103 12 ARG A 13 ? ? -174.36 122.37 104 12 ASP A 14 ? ? -59.36 87.64 105 12 SER A 15 ? ? -56.95 -159.00 106 12 TYR A 17 ? ? 65.95 81.15 107 13 MET A 3 ? ? -179.18 38.11 108 13 GLU A 5 ? ? -159.75 52.40 109 13 ILE A 8 ? ? -24.88 133.71 110 13 GLU A 9 ? ? -93.81 -74.85 111 13 LEU A 11 ? ? -152.57 -79.34 112 13 ARG A 13 ? ? -178.97 108.97 113 13 ASP A 14 ? ? -55.02 86.29 114 13 SER A 15 ? ? -54.04 172.32 115 13 LEU A 16 ? ? -104.54 -77.88 116 13 TYR A 17 ? ? -177.87 148.42 117 14 MET A 3 ? ? 57.73 98.60 118 14 GLU A 5 ? ? -155.57 48.90 119 14 LEU A 11 ? ? 177.54 -34.71 120 14 ARG A 13 ? ? 76.94 95.15 121 14 ASP A 14 ? ? -53.77 85.65 122 14 SER A 15 ? ? -43.63 161.69 123 14 PRO A 19 ? ? -67.66 -173.00 124 15 GLU A 5 ? ? -166.55 44.07 125 15 GLU A 6 ? ? -109.47 -60.74 126 15 ILE A 8 ? ? -35.33 139.46 127 15 LEU A 11 ? ? -96.65 -73.70 128 15 VAL A 12 ? ? 175.61 69.00 129 15 ARG A 13 ? ? -175.85 124.34 130 15 ASP A 14 ? ? -52.45 87.73 131 15 SER A 15 ? ? -49.81 -176.18 132 15 PRO A 18 ? ? -42.38 166.00 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLY 21 ? O ? A GLY 21 O 2 2 Y 1 A GLY 21 ? O ? A GLY 21 O 3 3 Y 1 A GLY 21 ? O ? A GLY 21 O 4 4 Y 1 A GLY 21 ? O ? A GLY 21 O 5 5 Y 1 A GLY 21 ? O ? A GLY 21 O 6 6 Y 1 A GLY 21 ? O ? A GLY 21 O 7 7 Y 1 A GLY 21 ? O ? A GLY 21 O 8 8 Y 1 A GLY 21 ? O ? A GLY 21 O 9 9 Y 1 A GLY 21 ? O ? A GLY 21 O 10 10 Y 1 A GLY 21 ? O ? A GLY 21 O 11 11 Y 1 A GLY 21 ? O ? A GLY 21 O 12 12 Y 1 A GLY 21 ? O ? A GLY 21 O 13 13 Y 1 A GLY 21 ? O ? A GLY 21 O 14 14 Y 1 A GLY 21 ? O ? A GLY 21 O 15 15 Y 1 A GLY 21 ? O ? A GLY 21 O # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 25350964 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #