data_5ZSY # _entry.id 5ZSY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5ZSY pdb_00005zsy 10.2210/pdb5zsy/pdb WWPDB D_1300007603 ? ? BMRB 36184 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'RBM10-RRM2 domain and its lung cancer related mutant' _pdbx_database_related.db_id 36184 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5ZSY _pdbx_database_status.recvd_initial_deposition_date 2018-04-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _audit_author.name 'Qin, H.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural, dynamics, and RNA binding comparison between RBM10-RRM2 domain and its lung cancer related mutation.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Qin, H.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RNA-binding protein 10' _entity.formula_weight 9577.053 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RBM10 RRM2 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'G patch domain-containing protein 9,RNA-binding motif protein 10,RNA-binding protein S1-1,S1-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTI NVEFAKGS ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTI NVEFAKGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 ASP n 1 5 THR n 1 6 ILE n 1 7 ILE n 1 8 LEU n 1 9 ARG n 1 10 ASN n 1 11 LEU n 1 12 ASN n 1 13 PRO n 1 14 HIS n 1 15 SER n 1 16 THR n 1 17 MET n 1 18 ASP n 1 19 SER n 1 20 ILE n 1 21 LEU n 1 22 GLY n 1 23 ALA n 1 24 LEU n 1 25 ALA n 1 26 PRO n 1 27 TYR n 1 28 ALA n 1 29 VAL n 1 30 LEU n 1 31 SER n 1 32 SER n 1 33 SER n 1 34 ASN n 1 35 VAL n 1 36 ARG n 1 37 VAL n 1 38 ILE n 1 39 LYS n 1 40 ASP n 1 41 LYS n 1 42 GLN n 1 43 THR n 1 44 GLN n 1 45 LEU n 1 46 ASN n 1 47 ARG n 1 48 GLY n 1 49 PHE n 1 50 ALA n 1 51 PHE n 1 52 ILE n 1 53 GLN n 1 54 LEU n 1 55 SER n 1 56 THR n 1 57 ILE n 1 58 GLU n 1 59 ALA n 1 60 ALA n 1 61 GLN n 1 62 LEU n 1 63 LEU n 1 64 GLN n 1 65 ILE n 1 66 LEU n 1 67 GLN n 1 68 ALA n 1 69 LEU n 1 70 HIS n 1 71 PRO n 1 72 PRO n 1 73 LEU n 1 74 THR n 1 75 ILE n 1 76 ASP n 1 77 GLY n 1 78 LYS n 1 79 THR n 1 80 ILE n 1 81 ASN n 1 82 VAL n 1 83 GLU n 1 84 PHE n 1 85 ALA n 1 86 LYS n 1 87 GLY n 1 88 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 88 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RBM10, DXS8237E, GPATC9, GPATCH9, KIAA0122' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBM10_HUMAN _struct_ref.pdbx_db_accession P98175 _struct_ref.pdbx_db_isoform P98175-4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTINVE FAKGS ; _struct_ref.pdbx_align_begin 223 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5ZSY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 88 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P98175 _struct_ref_seq.db_align_beg 223 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 307 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 88 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5ZSY GLY A 1 ? UNP P98175 ? ? 'expression tag' 1 1 1 5ZSY HIS A 2 ? UNP P98175 ? ? 'expression tag' 2 2 1 5ZSY MET A 3 ? UNP P98175 ? ? 'expression tag' 3 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '4D APSY-HACANH' 1 isotropic 2 1 1 '5D APSY-CBCACONH' 1 isotropic 3 1 1 '5D APSY-HACACONH' 1 isotropic 4 1 1 '3D 1H-15N NOESY' 2 isotropic 5 1 1 '3D 1H-13C NOESY aliphatic' 2 isotropic 6 1 1 '3D 1H-13C NOESY aromatic' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '20mM sodium Phosphate, 50mM sodium chloride' _pdbx_nmr_exptl_sample_conditions.details '20mM sodium Phosphate, 50mM sodium chloride' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.0 mM [U-100% 13C; U-100% 15N] RBM10 RRM2[V354del], 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 15N_13C_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 AVANCE ? Bruker 600 ? 2 AVANCE ? Bruker 800 ? # _pdbx_nmr_refine.entry_id 5ZSY _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # _pdbx_nmr_ensemble.entry_id 5ZSY _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5ZSY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' UNIO-ASCAN ? 'Volk, J.; Herrmann, T.; Fiorito, F.; Wuthrich, K.' 2 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 3 refinement OPAL ? 'Luginbuhl, Guntert, Billeter and Wuthrich' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ZSY _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5ZSY _struct.title 'RBM10-RRM2 domain and its lung cancer related mutant' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ZSY _struct_keywords.text 'classical folding and binding mode, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 MET A 17 ? GLY A 22 ? MET A 17 GLY A 22 1 ? 6 HELX_P HELX_P2 AA2 SER A 55 ? GLN A 67 ? SER A 55 GLN A 67 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 35 ? ARG A 36 ? VAL A 35 ARG A 36 AA1 2 ALA A 50 ? ILE A 52 ? ALA A 50 ILE A 52 AA1 3 ILE A 6 ? ARG A 9 ? ILE A 6 ARG A 9 AA1 4 ASN A 81 ? PHE A 84 ? ASN A 81 PHE A 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 36 ? N ARG A 36 O PHE A 51 ? O PHE A 51 AA1 2 3 O ALA A 50 ? O ALA A 50 N LEU A 8 ? N LEU A 8 AA1 3 4 N ILE A 7 ? N ILE A 7 O GLU A 83 ? O GLU A 83 # _atom_sites.entry_id 5ZSY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 HIS 2 2 2 HIS HIS A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 SER 88 88 88 SER SER A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 5850 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-12 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5ZSY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'Sequence of the protein is based on isoform 4 of database P98175 (RBM10_HUMAN).' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component 'RBM10 RRM2[V354del]' _pdbx_nmr_exptl_sample.concentration 1.0 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 13C; U-100% 15N]' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 17 _pdbx_validate_close_contact.auth_atom_id_1 HG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 55 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 58 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.56 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 4 ? ? 66.03 94.06 2 1 SER A 31 ? ? -84.90 -85.56 3 1 SER A 32 ? ? -170.26 -50.63 4 1 HIS A 70 ? ? -46.45 152.61 5 1 ASP A 76 ? ? -166.72 -22.80 6 1 ALA A 85 ? ? -117.71 70.79 7 2 MET A 3 ? ? 74.17 30.35 8 2 THR A 16 ? ? -124.85 -164.40 9 2 ALA A 23 ? ? -141.30 -25.40 10 2 ALA A 25 ? ? -116.48 53.85 11 2 SER A 31 ? ? -85.45 37.24 12 2 SER A 32 ? ? 60.19 -64.01 13 2 ASP A 40 ? ? -63.69 -174.77 14 2 GLN A 44 ? ? 65.34 -13.41 15 2 LEU A 45 ? ? -65.39 -179.08 16 2 ALA A 68 ? ? -153.57 -30.19 17 2 ASP A 76 ? ? -170.63 24.32 18 3 HIS A 2 ? ? -154.79 -64.53 19 3 ASP A 4 ? ? 71.65 86.31 20 3 LEU A 24 ? ? -102.56 42.48 21 3 ALA A 25 ? ? -119.68 54.14 22 3 TYR A 27 ? ? -135.46 -59.36 23 3 ASP A 76 ? ? 174.67 30.25 24 4 HIS A 2 ? ? -125.24 -61.54 25 4 ASP A 4 ? ? 46.44 83.54 26 4 THR A 16 ? ? -122.66 -86.98 27 4 MET A 17 ? ? -163.62 -37.30 28 4 ALA A 23 ? ? -141.44 12.68 29 4 TYR A 27 ? ? -137.37 -66.86 30 4 SER A 32 ? ? 58.21 -81.20 31 4 ALA A 68 ? ? -144.16 13.90 32 4 ASP A 76 ? ? -168.67 32.94 33 4 LYS A 86 ? ? -101.13 69.92 34 5 MET A 3 ? ? -73.46 23.24 35 5 ASP A 4 ? ? -173.29 84.72 36 5 GLN A 44 ? ? 57.38 13.45 37 5 ASP A 76 ? ? -168.54 37.07 38 5 LYS A 86 ? ? -61.56 93.19 39 6 ASP A 4 ? ? 59.53 85.97 40 6 TYR A 27 ? ? -122.09 -51.99 41 6 SER A 32 ? ? 61.65 -49.43 42 6 ARG A 36 ? ? -66.46 86.58 43 6 GLN A 42 ? ? -127.75 -51.43 44 6 ALA A 68 ? ? -154.38 -14.43 45 6 LEU A 69 ? ? -68.47 -162.70 46 6 ASP A 76 ? ? -167.70 24.65 47 7 ASP A 4 ? ? 43.88 84.08 48 7 THR A 16 ? ? -123.56 -57.82 49 7 MET A 17 ? ? -157.71 -56.38 50 7 ILE A 20 ? ? -137.38 -48.69 51 7 ALA A 23 ? ? -139.95 -40.32 52 7 ALA A 25 ? ? -114.68 61.90 53 7 TYR A 27 ? ? -124.15 -65.01 54 7 SER A 32 ? ? 73.07 -56.40 55 7 ASP A 40 ? ? -44.39 -86.77 56 7 LYS A 41 ? ? 172.41 -55.77 57 7 GLN A 44 ? ? 56.30 14.52 58 7 ALA A 68 ? ? -139.98 -30.70 59 7 ASP A 76 ? ? -174.53 34.52 60 8 ASP A 4 ? ? 43.03 84.03 61 8 THR A 16 ? ? -107.23 -86.13 62 8 MET A 17 ? ? -161.13 -68.48 63 8 SER A 31 ? ? -74.05 36.47 64 8 SER A 32 ? ? 59.97 -73.72 65 8 LYS A 41 ? ? 74.55 -56.99 66 8 GLN A 44 ? ? 70.92 -15.15 67 8 ALA A 68 ? ? -136.06 -37.82 68 8 HIS A 70 ? ? -48.26 160.73 69 8 ASP A 76 ? ? -174.87 34.67 70 8 ALA A 85 ? ? -102.34 78.73 71 9 HIS A 2 ? ? -141.77 -60.04 72 9 MET A 3 ? ? 53.42 -164.29 73 9 ASP A 4 ? ? 50.97 89.56 74 9 THR A 16 ? ? -128.55 -85.87 75 9 MET A 17 ? ? -156.68 -50.74 76 9 TYR A 27 ? ? -142.06 -24.04 77 9 SER A 32 ? ? 58.18 -45.80 78 9 GLN A 44 ? ? 70.49 -12.73 79 9 ASP A 76 ? ? 173.84 17.58 80 10 MET A 3 ? ? -69.52 -171.84 81 10 THR A 16 ? ? -129.44 -85.83 82 10 MET A 17 ? ? -158.28 -66.65 83 10 LEU A 24 ? ? -86.53 30.67 84 10 ALA A 25 ? ? -114.67 53.47 85 10 SER A 31 ? ? -77.66 35.50 86 10 SER A 32 ? ? 63.63 -70.64 87 10 GLN A 42 ? ? -92.72 -62.30 88 10 GLN A 44 ? ? 72.72 -13.77 89 10 LEU A 45 ? ? -61.38 -179.07 90 10 ALA A 68 ? ? -131.23 -33.01 91 10 LEU A 69 ? ? -58.84 175.77 92 10 ASP A 76 ? ? -171.21 32.84 93 11 MET A 3 ? ? 75.08 65.98 94 11 THR A 16 ? ? -129.20 -86.03 95 11 MET A 17 ? ? -159.45 -40.48 96 11 ALA A 23 ? ? -124.38 -64.63 97 11 LEU A 24 ? ? -88.77 45.53 98 11 LYS A 41 ? ? 75.14 -67.98 99 11 ALA A 68 ? ? -147.71 -21.39 100 11 ASP A 76 ? ? -164.58 29.07 101 11 LYS A 86 ? ? -68.48 97.33 102 12 HIS A 2 ? ? 48.35 -171.82 103 12 ASP A 4 ? ? 45.79 94.24 104 12 THR A 16 ? ? -135.83 -39.92 105 12 MET A 17 ? ? -175.06 -60.08 106 12 ASP A 40 ? ? -68.67 -175.48 107 12 ALA A 68 ? ? -133.51 -43.32 108 12 LEU A 69 ? ? -77.08 -168.89 109 12 ASP A 76 ? ? 178.19 42.62 110 12 LYS A 86 ? ? -71.63 42.09 111 13 HIS A 2 ? ? -164.00 -45.66 112 13 ASP A 4 ? ? 61.41 90.91 113 13 ASN A 10 ? ? 74.18 39.57 114 13 ASN A 12 ? ? -49.53 154.60 115 13 THR A 16 ? ? 60.13 -164.86 116 13 ALA A 23 ? ? -136.55 -37.85 117 13 LEU A 24 ? ? -95.14 31.31 118 13 GLN A 44 ? ? 68.22 -14.31 119 13 ALA A 68 ? ? -142.24 13.95 120 13 HIS A 70 ? ? 55.61 167.22 121 13 ASP A 76 ? ? -163.70 31.04 122 14 HIS A 2 ? ? 74.99 -58.70 123 14 MET A 3 ? ? 50.94 -163.76 124 14 THR A 16 ? ? -124.63 -164.24 125 14 ALA A 23 ? ? -144.51 -21.62 126 14 ALA A 25 ? ? -119.94 52.42 127 14 LYS A 41 ? ? 73.84 -20.93 128 14 GLN A 44 ? ? 58.73 -13.73 129 14 ASP A 76 ? ? -173.01 31.07 130 14 ALA A 85 ? ? -112.72 71.12 131 15 ASP A 4 ? ? 43.38 83.50 132 15 ILE A 20 ? ? -132.32 -34.73 133 15 ALA A 23 ? ? -150.65 -40.49 134 15 ALA A 25 ? ? -114.54 53.67 135 15 TYR A 27 ? ? -124.41 -79.60 136 15 SER A 31 ? ? -79.63 23.45 137 15 SER A 32 ? ? 55.29 -60.41 138 15 GLN A 42 ? ? -124.08 -50.56 139 15 GLN A 44 ? ? 71.74 -12.66 140 15 ASN A 46 ? ? -69.63 -165.73 141 15 ALA A 68 ? ? -131.40 -34.42 142 15 LEU A 69 ? ? -75.84 -166.77 143 15 ILE A 75 ? ? -145.44 13.98 144 15 ASP A 76 ? ? -166.70 18.58 145 16 ASP A 4 ? ? 74.73 98.32 146 16 THR A 16 ? ? -125.64 -74.17 147 16 MET A 17 ? ? -153.80 -48.00 148 16 ALA A 23 ? ? -143.16 -34.20 149 16 ALA A 25 ? ? -115.71 53.47 150 16 GLN A 42 ? ? -130.35 -42.29 151 16 GLN A 44 ? ? 73.11 -13.73 152 16 LEU A 54 ? ? -135.89 -154.86 153 16 ASP A 76 ? ? -173.94 28.00 154 17 ASP A 4 ? ? 75.25 94.53 155 17 ALA A 23 ? ? -142.60 12.98 156 17 ALA A 25 ? ? -114.95 52.66 157 17 TYR A 27 ? ? -134.59 -58.12 158 17 SER A 31 ? ? -90.18 33.00 159 17 SER A 32 ? ? 68.61 -61.95 160 17 GLN A 44 ? ? 57.32 14.77 161 17 ALA A 68 ? ? -141.65 14.50 162 17 ASP A 76 ? ? -171.68 41.07 163 18 MET A 3 ? ? -151.37 82.88 164 18 ASP A 4 ? ? 174.78 109.00 165 18 THR A 16 ? ? -147.29 -74.69 166 18 MET A 17 ? ? -160.67 -57.22 167 18 ILE A 20 ? ? -135.11 -47.09 168 18 SER A 32 ? ? 174.92 -46.59 169 18 HIS A 70 ? ? 49.75 166.93 170 18 ASP A 76 ? ? -166.82 31.21 171 19 HIS A 2 ? ? -130.22 -72.47 172 19 MET A 3 ? ? -167.24 93.07 173 19 ASP A 4 ? ? 42.63 83.23 174 19 ALA A 23 ? ? -149.28 -34.98 175 19 ALA A 25 ? ? -116.87 57.06 176 19 GLN A 44 ? ? 66.14 -13.30 177 19 LEU A 45 ? ? -65.11 -167.53 178 19 ASP A 76 ? ? -169.32 33.82 179 20 HIS A 2 ? ? 55.05 170.81 180 20 ASP A 4 ? ? 57.99 84.68 181 20 THR A 16 ? ? 44.45 -164.59 182 20 GLN A 44 ? ? 72.32 -13.06 183 20 ALA A 68 ? ? -144.06 14.47 184 20 HIS A 70 ? ? -46.66 158.47 185 20 ASP A 76 ? ? -161.39 37.74 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 2 ASP A 4 ? ? THR A 5 ? ? 147.67 2 10 GLY A 87 ? ? SER A 88 ? ? 145.43 3 15 SER A 15 ? ? THR A 16 ? ? 144.19 4 20 HIS A 2 ? ? MET A 3 ? ? 148.68 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 27 ? ? 0.083 'SIDE CHAIN' 2 2 ARG A 9 ? ? 0.089 'SIDE CHAIN' 3 7 TYR A 27 ? ? 0.094 'SIDE CHAIN' 4 7 ARG A 36 ? ? 0.090 'SIDE CHAIN' 5 9 TYR A 27 ? ? 0.078 'SIDE CHAIN' 6 10 ARG A 9 ? ? 0.107 'SIDE CHAIN' 7 14 TYR A 27 ? ? 0.077 'SIDE CHAIN' 8 16 ASP A 76 ? ? 0.070 'SIDE CHAIN' 9 17 ARG A 36 ? ? 0.077 'SIDE CHAIN' 10 19 ARG A 47 ? ? 0.078 'SIDE CHAIN' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #