HEADER ELECTRON TRANSPORT 02-MAY-18 5ZTD TITLE X-RAY CRYSTAL STRUCTURE OF PSEUDOAZURIN MET16VAL VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOAZURIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 29-152; COMPND 5 SYNONYM: BLUE COPPER PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER CYCLOCLASTES; SOURCE 3 ORGANISM_TAXID: 223; SOURCE 4 GENE: BCP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.SAKAI,T.YAMAGUCHI,T.KOHZUMA REVDAT 2 22-NOV-23 5ZTD 1 REMARK REVDAT 1 15-MAY-19 5ZTD 0 JRNL AUTH C.SAKAI,T.YAMAGUCHI,T.KOHZUMA JRNL TITL X-RAY CRYSTAL STRUCTURE OF PSEUDOAZURIN MET16VAL VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 89356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.895 REMARK 3 FREE R VALUE TEST SET COUNT : 4599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1824 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 592 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1300007628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93957 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 52.365 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : 0.33600 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMEN REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1BQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.1M TRIS-HCL (PH 8.5), 27% REMARK 280 PEG1000 DROP: 42MG/ML MET16VAL PSEUDOAZURIN, 0.1M TRIS-HCL (PH REMARK 280 8.5), 13.5% PEG1000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.28000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 46 O HOH A 301 1.08 REMARK 500 OG1 THR A 32 HD3 LYS A 65 1.13 REMARK 500 HZ1 LYS B 65 O HOH B 301 1.28 REMARK 500 HG2 LYS A 46 O HOH A 532 1.31 REMARK 500 HZ2 LYS A 38 O HOH A 304 1.39 REMARK 500 HZ3 LYS A 46 O HOH A 301 1.47 REMARK 500 HG21 ILE A 49 O HOH A 403 1.52 REMARK 500 NZ LYS A 46 O HOH A 301 1.54 REMARK 500 HE2 LYS B 46 O HOH B 307 1.58 REMARK 500 O HOH B 451 O HOH B 464 1.71 REMARK 500 O HOH A 501 O HOH A 554 1.91 REMARK 500 O HOH B 375 O HOH B 396 1.96 REMARK 500 CE LYS B 46 O HOH B 307 1.98 REMARK 500 NZ LYS A 109 O HOH A 302 2.01 REMARK 500 NZ LYS B 65 O HOH B 301 2.02 REMARK 500 O HOH A 336 O HOH A 582 2.02 REMARK 500 NZ LYS B 38 O HOH B 302 2.03 REMARK 500 O HOH A 469 O HOH A 515 2.03 REMARK 500 O HOH A 604 O HOH A 621 2.05 REMARK 500 CG LYS A 46 O HOH A 532 2.05 REMARK 500 O HOH A 368 O HOH A 450 2.06 REMARK 500 OG1 THR A 32 CD LYS A 65 2.08 REMARK 500 O HOH B 392 O HOH B 467 2.10 REMARK 500 O ASP B 94 O HOH B 303 2.12 REMARK 500 OD1 ASP A 51 O HOH A 303 2.12 REMARK 500 O HOH A 576 O HOH A 578 2.14 REMARK 500 O HOH B 433 O HOH B 481 2.16 REMARK 500 O HOH B 466 O HOH B 539 2.19 REMARK 500 CG2 ILE A 49 O HOH A 403 2.19 REMARK 500 O GLU B 100 O HOH B 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ1 LYS B 110 O HOH B 546 2547 1.42 REMARK 500 HZ3 LYS A 12 O HOH B 332 1554 1.49 REMARK 500 HZ2 LYS B 103 O HOH B 380 1655 1.57 REMARK 500 NZ LYS B 110 O HOH B 546 2547 1.84 REMARK 500 O HOH B 538 O HOH B 554 2557 1.91 REMARK 500 O HOH A 479 O HOH B 392 1655 2.13 REMARK 500 O HOH A 469 O HOH B 507 1655 2.13 REMARK 500 O HOH A 627 O HOH B 560 2556 2.14 REMARK 500 O HOH B 359 O HOH B 546 2547 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 54 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 TYR B 64 CD1 - CE1 - CZ ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR B 82 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR B 82 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 LEU B 122 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 16 88.10 44.88 REMARK 500 VAL B 16 85.52 47.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 123 ASN B 124 148.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 614 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 615 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 616 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 617 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 618 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 619 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 620 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A 622 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 625 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 626 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A 627 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A 628 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A 629 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH B 556 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 557 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 558 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 559 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 560 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B 561 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH B 562 DISTANCE = 7.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 ND1 REMARK 620 2 CYS A 78 SG 127.4 REMARK 620 3 HIS A 81 ND1 99.4 111.4 REMARK 620 4 MET A 86 SD 90.5 113.4 112.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 40 ND1 REMARK 620 2 CYS B 78 SG 127.5 REMARK 620 3 HIS B 81 ND1 99.1 112.8 REMARK 620 4 MET B 86 SD 92.5 112.2 110.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 DBREF 5ZTD A 1 124 UNP P19567 AZUP_ACHCY 29 152 DBREF 5ZTD B 1 124 UNP P19567 AZUP_ACHCY 29 152 SEQADV 5ZTD VAL A 16 UNP P19567 MET 44 ENGINEERED MUTATION SEQADV 5ZTD VAL B 16 UNP P19567 MET 44 ENGINEERED MUTATION SEQRES 1 A 124 ALA ASP PHE GLU VAL HIS MET LEU ASN LYS GLY LYS ASP SEQRES 2 A 124 GLY ALA VAL VAL PHE GLU PRO ALA SER LEU LYS VAL ALA SEQRES 3 A 124 PRO GLY ASP THR VAL THR PHE ILE PRO THR ASP LYS GLY SEQRES 4 A 124 HIS ASN VAL GLU THR ILE LYS GLY MET ILE PRO ASP GLY SEQRES 5 A 124 ALA GLU ALA PHE LYS SER LYS ILE ASN GLU ASN TYR LYS SEQRES 6 A 124 VAL THR PHE THR ALA PRO GLY VAL TYR GLY VAL LYS CYS SEQRES 7 A 124 THR PRO HIS TYR GLY MET GLY MET VAL GLY VAL VAL GLN SEQRES 8 A 124 VAL GLY ASP ALA PRO ALA ASN LEU GLU ALA VAL LYS GLY SEQRES 9 A 124 ALA LYS ASN PRO LYS LYS ALA GLN GLU ARG LEU ASP ALA SEQRES 10 A 124 ALA LEU ALA ALA LEU GLY ASN SEQRES 1 B 124 ALA ASP PHE GLU VAL HIS MET LEU ASN LYS GLY LYS ASP SEQRES 2 B 124 GLY ALA VAL VAL PHE GLU PRO ALA SER LEU LYS VAL ALA SEQRES 3 B 124 PRO GLY ASP THR VAL THR PHE ILE PRO THR ASP LYS GLY SEQRES 4 B 124 HIS ASN VAL GLU THR ILE LYS GLY MET ILE PRO ASP GLY SEQRES 5 B 124 ALA GLU ALA PHE LYS SER LYS ILE ASN GLU ASN TYR LYS SEQRES 6 B 124 VAL THR PHE THR ALA PRO GLY VAL TYR GLY VAL LYS CYS SEQRES 7 B 124 THR PRO HIS TYR GLY MET GLY MET VAL GLY VAL VAL GLN SEQRES 8 B 124 VAL GLY ASP ALA PRO ALA ASN LEU GLU ALA VAL LYS GLY SEQRES 9 B 124 ALA LYS ASN PRO LYS LYS ALA GLN GLU ARG LEU ASP ALA SEQRES 10 B 124 ALA LEU ALA ALA LEU GLY ASN HET CU A 201 1 HET CU B 201 1 HETNAM CU COPPER (II) ION FORMUL 3 CU 2(CU 2+) FORMUL 5 HOH *592(H2 O) HELIX 1 AA1 THR A 79 TYR A 82 5 4 HELIX 2 AA2 ASN A 98 ALA A 105 1 8 HELIX 3 AA3 PRO A 108 LEU A 122 1 15 HELIX 4 AA4 HIS B 81 GLY B 85 5 5 HELIX 5 AA5 ASN B 98 ALA B 105 1 8 HELIX 6 AA6 PRO B 108 GLY B 123 1 16 SHEET 1 AA1 4 GLY A 14 GLU A 19 0 SHEET 2 AA1 4 ASP A 2 GLY A 11 -1 N HIS A 6 O GLU A 19 SHEET 3 AA1 4 ASP A 29 ILE A 34 1 O ILE A 34 N VAL A 5 SHEET 4 AA1 4 TYR A 64 PHE A 68 -1 O VAL A 66 N VAL A 31 SHEET 1 AA2 4 SER A 22 VAL A 25 0 SHEET 2 AA2 4 VAL A 87 VAL A 92 1 O GLN A 91 N VAL A 25 SHEET 3 AA2 4 GLY A 72 LYS A 77 -1 N GLY A 72 O VAL A 92 SHEET 4 AA2 4 GLU A 43 THR A 44 -1 N GLU A 43 O LYS A 77 SHEET 1 AA3 4 GLY B 14 GLU B 19 0 SHEET 2 AA3 4 ASP B 2 GLY B 11 -1 N HIS B 6 O GLU B 19 SHEET 3 AA3 4 THR B 30 ILE B 34 1 O THR B 32 N PHE B 3 SHEET 4 AA3 4 TYR B 64 THR B 67 -1 O TYR B 64 N PHE B 33 SHEET 1 AA4 4 SER B 22 VAL B 25 0 SHEET 2 AA4 4 VAL B 87 VAL B 92 1 O GLN B 91 N VAL B 25 SHEET 3 AA4 4 GLY B 72 LYS B 77 -1 N GLY B 72 O VAL B 92 SHEET 4 AA4 4 GLU B 43 THR B 44 -1 N GLU B 43 O LYS B 77 LINK ND1 HIS A 40 CU CU A 201 1555 1555 1.98 LINK SG CYS A 78 CU CU A 201 1555 1555 2.23 LINK ND1 HIS A 81 CU CU A 201 1555 1555 2.03 LINK SD MET A 86 CU CU A 201 1555 1555 2.50 LINK ND1 HIS B 40 CU CU B 201 1555 1555 2.01 LINK SG CYS B 78 CU CU B 201 1555 1555 2.22 LINK ND1 HIS B 81 CU CU B 201 1555 1555 2.03 LINK SD MET B 86 CU CU B 201 1555 1555 2.53 CISPEP 1 GLU A 19 PRO A 20 0 -1.30 CISPEP 2 GLU B 19 PRO B 20 0 -2.26 SITE 1 AC1 4 HIS A 40 CYS A 78 HIS A 81 MET A 86 SITE 1 AC2 4 HIS B 40 CYS B 78 HIS B 81 MET B 86 CRYST1 35.070 60.560 54.530 90.00 106.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028514 0.000000 0.008284 0.00000 SCALE2 0.000000 0.016513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019097 0.00000