data_6AV8 # _entry.id 6AV8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6AV8 pdb_00006av8 10.2210/pdb6av8/pdb WWPDB D_1000229889 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6ATL unspecified PDB . 6ATM unspecified PDB . 6ATN unspecified PDB . 6ATS unspecified PDB . 6ATU unspecified PDB . 6ATW unspecified PDB . 6ATY unspecified PDB . 6AU7 unspecified PDB . 6AUP unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6AV8 _pdbx_database_status.recvd_initial_deposition_date 2017-09-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gewe, M.M.' 1 ? 'Rupert, P.' 2 ? 'Strong, R.K.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 270 _citation.page_last 278 _citation.title 'Screening, large-scale production and structure-based classification of cystine-dense peptides.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0033-9 _citation.pdbx_database_id_PubMed 29483648 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Correnti, C.E.' 1 ? primary 'Gewe, M.M.' 2 ? primary 'Mehlin, C.' 3 ? primary 'Bandaranayake, A.D.' 4 ? primary 'Johnsen, W.A.' 5 ? primary 'Rupert, P.B.' 6 ? primary 'Brusniak, M.Y.' 7 ? primary 'Clarke, M.' 8 ? primary 'Burke, S.E.' 9 ? primary 'De Van Der Schueren, W.' 10 ? primary 'Pilat, K.' 11 ? primary 'Turnbaugh, S.M.' 12 ? primary 'May, D.' 13 ? primary 'Watson, A.' 14 ? primary 'Chan, M.K.' 15 ? primary 'Bahl, C.D.' 16 ? primary 'Olson, J.M.' 17 ? primary 'Strong, R.K.' 18 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6AV8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 50.639 _cell.length_a_esd ? _cell.length_b 50.639 _cell.length_b_esd ? _cell.length_c 20.104 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'U5-theraphotoxin-Hs1b 1' 3877.481 1 ? ? 'residues 50-82' ? 2 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'U5-TRTX-Hs1b,Lectin SHL-Ib1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSGCFGYKCDYYKGCCSGYVCSPTWKWCVRPGPGR _entity_poly.pdbx_seq_one_letter_code_can GSGCFGYKCDYYKGCCSGYVCSPTWKWCVRPGPGR _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 CYS n 1 5 PHE n 1 6 GLY n 1 7 TYR n 1 8 LYS n 1 9 CYS n 1 10 ASP n 1 11 TYR n 1 12 TYR n 1 13 LYS n 1 14 GLY n 1 15 CYS n 1 16 CYS n 1 17 SER n 1 18 GLY n 1 19 TYR n 1 20 VAL n 1 21 CYS n 1 22 SER n 1 23 PRO n 1 24 THR n 1 25 TRP n 1 26 LYS n 1 27 TRP n 1 28 CYS n 1 29 VAL n 1 30 ARG n 1 31 PRO n 1 32 GLY n 1 33 PRO n 1 34 GLY n 1 35 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 35 _entity_src_gen.gene_src_common_name 'Chinese bird spider' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haplopelma schmidti' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 29017 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell HEK-293F _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TXLB1_HAPSC _struct_ref.pdbx_db_accession B3FIS6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GCFGYKCDYYKGCCSGYVCSPTWKWCVRPGPGR _struct_ref.pdbx_align_begin 50 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6AV8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 35 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B3FIS6 _struct_ref_seq.db_align_beg 50 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 82 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 33 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6AV8 GLY A 1 ? UNP B3FIS6 ? ? 'expression tag' -1 1 1 6AV8 SER A 2 ? UNP B3FIS6 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6AV8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 citrate pH = 5, 20% w/w PEG 6000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-05-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6AV8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.89 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2417 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 25.9 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 58.11 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.059 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.89 _reflns_shell.d_res_low 1.94 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 94 _reflns_shell.percent_possible_all 80.3 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.286 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.118 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.941 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.87 _refine.aniso_B[1][2] -0.43 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.87 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 2.81 _refine.B_iso_max ? _refine.B_iso_mean 29.265 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6AV8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.89 _refine.ls_d_res_low 43.85 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2207 _refine.ls_number_reflns_R_free 107 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.68 _refine.ls_percent_reflns_R_free 4.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.21801 _refine.ls_R_factor_R_free 0.26723 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.21572 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1QK7 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.190 _refine.pdbx_overall_ESU_R_Free 0.175 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 11.327 _refine.overall_SU_ML 0.143 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 228 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 246 _refine_hist.d_res_high 1.89 _refine_hist.d_res_low 43.85 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.027 0.020 241 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 191 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.717 1.911 329 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.925 3.000 444 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 9.748 5.000 28 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 23.020 20.000 9 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.476 15.000 30 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 24.086 15.000 1 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.113 0.200 28 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 0.021 266 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 63 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 2.431 2.587 115 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.388 2.573 114 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.531 4.346 142 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.524 4.358 143 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.931 2.654 126 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.919 2.659 127 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.302 4.363 188 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.317 21.211 289 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.318 21.213 289 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.892 _refine_ls_shell.d_res_low 1.941 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 8 _refine_ls_shell.number_reflns_R_work 138 _refine_ls_shell.percent_reflns_obs 76.44 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.478 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.492 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6AV8 _struct.title 'Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6AV8 _struct_keywords.text 'Knottins, Cystine knot, Toxins, TOXIN' _struct_keywords.pdbx_keywords TOXIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 2 A CYS 14 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 21 SG ? ? A CYS 7 A CYS 19 1_555 ? ? ? ? ? ? ? 1.988 ? ? disulf3 disulf ? ? A CYS 15 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 13 A CYS 26 1_555 ? ? ? ? ? ? ? 1.995 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 20 ? CYS A 21 ? VAL A 18 CYS A 19 AA1 2 CYS A 28 ? VAL A 29 ? CYS A 26 VAL A 27 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 20 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 18 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 29 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 27 # _atom_sites.entry_id 6AV8 _atom_sites.fract_transf_matrix[1][1] 0.019748 _atom_sites.fract_transf_matrix[1][2] 0.011401 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022803 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.049741 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 GLY 3 1 1 GLY GLY A . n A 1 4 CYS 4 2 2 CYS CYS A . n A 1 5 PHE 5 3 3 PHE PHE A . n A 1 6 GLY 6 4 4 GLY GLY A . n A 1 7 TYR 7 5 5 TYR TYR A . n A 1 8 LYS 8 6 6 LYS LYS A . n A 1 9 CYS 9 7 7 CYS CYS A . n A 1 10 ASP 10 8 8 ASP ASP A . n A 1 11 TYR 11 9 9 TYR TYR A . n A 1 12 TYR 12 10 10 TYR TYR A . n A 1 13 LYS 13 11 11 LYS LYS A . n A 1 14 GLY 14 12 12 GLY GLY A . n A 1 15 CYS 15 13 13 CYS CYS A . n A 1 16 CYS 16 14 14 CYS CYS A . n A 1 17 SER 17 15 15 SER SER A . n A 1 18 GLY 18 16 16 GLY GLY A . n A 1 19 TYR 19 17 17 TYR TYR A . n A 1 20 VAL 20 18 18 VAL VAL A . n A 1 21 CYS 21 19 19 CYS CYS A . n A 1 22 SER 22 20 20 SER SER A . n A 1 23 PRO 23 21 21 PRO PRO A . n A 1 24 THR 24 22 22 THR THR A . n A 1 25 TRP 25 23 23 TRP TRP A . n A 1 26 LYS 26 24 24 LYS LYS A . n A 1 27 TRP 27 25 25 TRP TRP A . n A 1 28 CYS 28 26 26 CYS CYS A . n A 1 29 VAL 29 27 27 VAL VAL A . n A 1 30 ARG 30 28 28 ARG ARG A . n A 1 31 PRO 31 29 29 PRO PRO A . n A 1 32 GLY 32 30 ? ? ? A . n A 1 33 PRO 33 31 ? ? ? A . n A 1 34 GLY 34 32 ? ? ? A . n A 1 35 ARG 35 33 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 11 HOH HOH A . B 2 HOH 2 102 1 HOH HOH A . B 2 HOH 3 103 27 HOH HOH A . B 2 HOH 4 104 33 HOH HOH A . B 2 HOH 5 105 3 HOH HOH A . B 2 HOH 6 106 29 HOH HOH A . B 2 HOH 7 107 30 HOH HOH A . B 2 HOH 8 108 37 HOH HOH A . B 2 HOH 9 109 34 HOH HOH A . B 2 HOH 10 110 28 HOH HOH A . B 2 HOH 11 111 36 HOH HOH A . B 2 HOH 12 112 38 HOH HOH A . B 2 HOH 13 113 32 HOH HOH A . B 2 HOH 14 114 31 HOH HOH A . B 2 HOH 15 115 5 HOH HOH A . B 2 HOH 16 116 4 HOH HOH A . B 2 HOH 17 117 39 HOH HOH A . B 2 HOH 18 118 35 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-28 2 'Structure model' 1 1 2018-03-14 3 'Structure model' 1 2 2023-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.name' 8 3 'Structure model' '_database_2.pdbx_DOI' 9 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -18.4892 _pdbx_refine_tls.origin_y 2.8446 _pdbx_refine_tls.origin_z 1.8036 _pdbx_refine_tls.T[1][1] 0.0510 _pdbx_refine_tls.T[2][2] 0.0334 _pdbx_refine_tls.T[3][3] 0.0253 _pdbx_refine_tls.T[1][2] 0.0257 _pdbx_refine_tls.T[1][3] -0.0098 _pdbx_refine_tls.T[2][3] 0.0144 _pdbx_refine_tls.L[1][1] 9.6970 _pdbx_refine_tls.L[2][2] 2.8416 _pdbx_refine_tls.L[3][3] 3.5364 _pdbx_refine_tls.L[1][2] 1.0038 _pdbx_refine_tls.L[1][3] -0.4685 _pdbx_refine_tls.L[2][3] 0.5123 _pdbx_refine_tls.S[1][1] 0.1704 _pdbx_refine_tls.S[1][2] 0.1823 _pdbx_refine_tls.S[1][3] 0.2620 _pdbx_refine_tls.S[2][1] -0.1713 _pdbx_refine_tls.S[2][2] -0.2442 _pdbx_refine_tls.S[2][3] -0.0749 _pdbx_refine_tls.S[3][1] -0.1159 _pdbx_refine_tls.S[3][2] 0.0450 _pdbx_refine_tls.S[3][3] 0.0738 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 29 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A TYR 5 ? ? CG A TYR 5 ? ? 1.612 1.512 0.100 0.015 N 2 1 CB A TRP 25 ? ? CG A TRP 25 ? ? 1.617 1.498 0.119 0.018 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 2 ? ? -163.37 32.64 2 1 LYS A 11 ? ? -101.17 78.85 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 6 ? CG ? A LYS 8 CG 2 1 Y 1 A LYS 6 ? CD ? A LYS 8 CD 3 1 Y 1 A LYS 6 ? CE ? A LYS 8 CE 4 1 Y 1 A LYS 6 ? NZ ? A LYS 8 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A GLY 30 ? A GLY 32 4 1 Y 1 A PRO 31 ? A PRO 33 5 1 Y 1 A GLY 32 ? A GLY 34 6 1 Y 1 A ARG 33 ? A ARG 35 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASP N N N N 28 ASP CA C N S 29 ASP C C N N 30 ASP O O N N 31 ASP CB C N N 32 ASP CG C N N 33 ASP OD1 O N N 34 ASP OD2 O N N 35 ASP OXT O N N 36 ASP H H N N 37 ASP H2 H N N 38 ASP HA H N N 39 ASP HB2 H N N 40 ASP HB3 H N N 41 ASP HD2 H N N 42 ASP HXT H N N 43 CYS N N N N 44 CYS CA C N R 45 CYS C C N N 46 CYS O O N N 47 CYS CB C N N 48 CYS SG S N N 49 CYS OXT O N N 50 CYS H H N N 51 CYS H2 H N N 52 CYS HA H N N 53 CYS HB2 H N N 54 CYS HB3 H N N 55 CYS HG H N N 56 CYS HXT H N N 57 GLY N N N N 58 GLY CA C N N 59 GLY C C N N 60 GLY O O N N 61 GLY OXT O N N 62 GLY H H N N 63 GLY H2 H N N 64 GLY HA2 H N N 65 GLY HA3 H N N 66 GLY HXT H N N 67 HOH O O N N 68 HOH H1 H N N 69 HOH H2 H N N 70 LYS N N N N 71 LYS CA C N S 72 LYS C C N N 73 LYS O O N N 74 LYS CB C N N 75 LYS CG C N N 76 LYS CD C N N 77 LYS CE C N N 78 LYS NZ N N N 79 LYS OXT O N N 80 LYS H H N N 81 LYS H2 H N N 82 LYS HA H N N 83 LYS HB2 H N N 84 LYS HB3 H N N 85 LYS HG2 H N N 86 LYS HG3 H N N 87 LYS HD2 H N N 88 LYS HD3 H N N 89 LYS HE2 H N N 90 LYS HE3 H N N 91 LYS HZ1 H N N 92 LYS HZ2 H N N 93 LYS HZ3 H N N 94 LYS HXT H N N 95 PHE N N N N 96 PHE CA C N S 97 PHE C C N N 98 PHE O O N N 99 PHE CB C N N 100 PHE CG C Y N 101 PHE CD1 C Y N 102 PHE CD2 C Y N 103 PHE CE1 C Y N 104 PHE CE2 C Y N 105 PHE CZ C Y N 106 PHE OXT O N N 107 PHE H H N N 108 PHE H2 H N N 109 PHE HA H N N 110 PHE HB2 H N N 111 PHE HB3 H N N 112 PHE HD1 H N N 113 PHE HD2 H N N 114 PHE HE1 H N N 115 PHE HE2 H N N 116 PHE HZ H N N 117 PHE HXT H N N 118 PRO N N N N 119 PRO CA C N S 120 PRO C C N N 121 PRO O O N N 122 PRO CB C N N 123 PRO CG C N N 124 PRO CD C N N 125 PRO OXT O N N 126 PRO H H N N 127 PRO HA H N N 128 PRO HB2 H N N 129 PRO HB3 H N N 130 PRO HG2 H N N 131 PRO HG3 H N N 132 PRO HD2 H N N 133 PRO HD3 H N N 134 PRO HXT H N N 135 SER N N N N 136 SER CA C N S 137 SER C C N N 138 SER O O N N 139 SER CB C N N 140 SER OG O N N 141 SER OXT O N N 142 SER H H N N 143 SER H2 H N N 144 SER HA H N N 145 SER HB2 H N N 146 SER HB3 H N N 147 SER HG H N N 148 SER HXT H N N 149 THR N N N N 150 THR CA C N S 151 THR C C N N 152 THR O O N N 153 THR CB C N R 154 THR OG1 O N N 155 THR CG2 C N N 156 THR OXT O N N 157 THR H H N N 158 THR H2 H N N 159 THR HA H N N 160 THR HB H N N 161 THR HG1 H N N 162 THR HG21 H N N 163 THR HG22 H N N 164 THR HG23 H N N 165 THR HXT H N N 166 TRP N N N N 167 TRP CA C N S 168 TRP C C N N 169 TRP O O N N 170 TRP CB C N N 171 TRP CG C Y N 172 TRP CD1 C Y N 173 TRP CD2 C Y N 174 TRP NE1 N Y N 175 TRP CE2 C Y N 176 TRP CE3 C Y N 177 TRP CZ2 C Y N 178 TRP CZ3 C Y N 179 TRP CH2 C Y N 180 TRP OXT O N N 181 TRP H H N N 182 TRP H2 H N N 183 TRP HA H N N 184 TRP HB2 H N N 185 TRP HB3 H N N 186 TRP HD1 H N N 187 TRP HE1 H N N 188 TRP HE3 H N N 189 TRP HZ2 H N N 190 TRP HZ3 H N N 191 TRP HH2 H N N 192 TRP HXT H N N 193 TYR N N N N 194 TYR CA C N S 195 TYR C C N N 196 TYR O O N N 197 TYR CB C N N 198 TYR CG C Y N 199 TYR CD1 C Y N 200 TYR CD2 C Y N 201 TYR CE1 C Y N 202 TYR CE2 C Y N 203 TYR CZ C Y N 204 TYR OH O N N 205 TYR OXT O N N 206 TYR H H N N 207 TYR H2 H N N 208 TYR HA H N N 209 TYR HB2 H N N 210 TYR HB3 H N N 211 TYR HD1 H N N 212 TYR HD2 H N N 213 TYR HE1 H N N 214 TYR HE2 H N N 215 TYR HH H N N 216 TYR HXT H N N 217 VAL N N N N 218 VAL CA C N S 219 VAL C C N N 220 VAL O O N N 221 VAL CB C N N 222 VAL CG1 C N N 223 VAL CG2 C N N 224 VAL OXT O N N 225 VAL H H N N 226 VAL H2 H N N 227 VAL HA H N N 228 VAL HB H N N 229 VAL HG11 H N N 230 VAL HG12 H N N 231 VAL HG13 H N N 232 VAL HG21 H N N 233 VAL HG22 H N N 234 VAL HG23 H N N 235 VAL HXT H N N 236 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASP N CA sing N N 27 ASP N H sing N N 28 ASP N H2 sing N N 29 ASP CA C sing N N 30 ASP CA CB sing N N 31 ASP CA HA sing N N 32 ASP C O doub N N 33 ASP C OXT sing N N 34 ASP CB CG sing N N 35 ASP CB HB2 sing N N 36 ASP CB HB3 sing N N 37 ASP CG OD1 doub N N 38 ASP CG OD2 sing N N 39 ASP OD2 HD2 sing N N 40 ASP OXT HXT sing N N 41 CYS N CA sing N N 42 CYS N H sing N N 43 CYS N H2 sing N N 44 CYS CA C sing N N 45 CYS CA CB sing N N 46 CYS CA HA sing N N 47 CYS C O doub N N 48 CYS C OXT sing N N 49 CYS CB SG sing N N 50 CYS CB HB2 sing N N 51 CYS CB HB3 sing N N 52 CYS SG HG sing N N 53 CYS OXT HXT sing N N 54 GLY N CA sing N N 55 GLY N H sing N N 56 GLY N H2 sing N N 57 GLY CA C sing N N 58 GLY CA HA2 sing N N 59 GLY CA HA3 sing N N 60 GLY C O doub N N 61 GLY C OXT sing N N 62 GLY OXT HXT sing N N 63 HOH O H1 sing N N 64 HOH O H2 sing N N 65 LYS N CA sing N N 66 LYS N H sing N N 67 LYS N H2 sing N N 68 LYS CA C sing N N 69 LYS CA CB sing N N 70 LYS CA HA sing N N 71 LYS C O doub N N 72 LYS C OXT sing N N 73 LYS CB CG sing N N 74 LYS CB HB2 sing N N 75 LYS CB HB3 sing N N 76 LYS CG CD sing N N 77 LYS CG HG2 sing N N 78 LYS CG HG3 sing N N 79 LYS CD CE sing N N 80 LYS CD HD2 sing N N 81 LYS CD HD3 sing N N 82 LYS CE NZ sing N N 83 LYS CE HE2 sing N N 84 LYS CE HE3 sing N N 85 LYS NZ HZ1 sing N N 86 LYS NZ HZ2 sing N N 87 LYS NZ HZ3 sing N N 88 LYS OXT HXT sing N N 89 PHE N CA sing N N 90 PHE N H sing N N 91 PHE N H2 sing N N 92 PHE CA C sing N N 93 PHE CA CB sing N N 94 PHE CA HA sing N N 95 PHE C O doub N N 96 PHE C OXT sing N N 97 PHE CB CG sing N N 98 PHE CB HB2 sing N N 99 PHE CB HB3 sing N N 100 PHE CG CD1 doub Y N 101 PHE CG CD2 sing Y N 102 PHE CD1 CE1 sing Y N 103 PHE CD1 HD1 sing N N 104 PHE CD2 CE2 doub Y N 105 PHE CD2 HD2 sing N N 106 PHE CE1 CZ doub Y N 107 PHE CE1 HE1 sing N N 108 PHE CE2 CZ sing Y N 109 PHE CE2 HE2 sing N N 110 PHE CZ HZ sing N N 111 PHE OXT HXT sing N N 112 PRO N CA sing N N 113 PRO N CD sing N N 114 PRO N H sing N N 115 PRO CA C sing N N 116 PRO CA CB sing N N 117 PRO CA HA sing N N 118 PRO C O doub N N 119 PRO C OXT sing N N 120 PRO CB CG sing N N 121 PRO CB HB2 sing N N 122 PRO CB HB3 sing N N 123 PRO CG CD sing N N 124 PRO CG HG2 sing N N 125 PRO CG HG3 sing N N 126 PRO CD HD2 sing N N 127 PRO CD HD3 sing N N 128 PRO OXT HXT sing N N 129 SER N CA sing N N 130 SER N H sing N N 131 SER N H2 sing N N 132 SER CA C sing N N 133 SER CA CB sing N N 134 SER CA HA sing N N 135 SER C O doub N N 136 SER C OXT sing N N 137 SER CB OG sing N N 138 SER CB HB2 sing N N 139 SER CB HB3 sing N N 140 SER OG HG sing N N 141 SER OXT HXT sing N N 142 THR N CA sing N N 143 THR N H sing N N 144 THR N H2 sing N N 145 THR CA C sing N N 146 THR CA CB sing N N 147 THR CA HA sing N N 148 THR C O doub N N 149 THR C OXT sing N N 150 THR CB OG1 sing N N 151 THR CB CG2 sing N N 152 THR CB HB sing N N 153 THR OG1 HG1 sing N N 154 THR CG2 HG21 sing N N 155 THR CG2 HG22 sing N N 156 THR CG2 HG23 sing N N 157 THR OXT HXT sing N N 158 TRP N CA sing N N 159 TRP N H sing N N 160 TRP N H2 sing N N 161 TRP CA C sing N N 162 TRP CA CB sing N N 163 TRP CA HA sing N N 164 TRP C O doub N N 165 TRP C OXT sing N N 166 TRP CB CG sing N N 167 TRP CB HB2 sing N N 168 TRP CB HB3 sing N N 169 TRP CG CD1 doub Y N 170 TRP CG CD2 sing Y N 171 TRP CD1 NE1 sing Y N 172 TRP CD1 HD1 sing N N 173 TRP CD2 CE2 doub Y N 174 TRP CD2 CE3 sing Y N 175 TRP NE1 CE2 sing Y N 176 TRP NE1 HE1 sing N N 177 TRP CE2 CZ2 sing Y N 178 TRP CE3 CZ3 doub Y N 179 TRP CE3 HE3 sing N N 180 TRP CZ2 CH2 doub Y N 181 TRP CZ2 HZ2 sing N N 182 TRP CZ3 CH2 sing Y N 183 TRP CZ3 HZ3 sing N N 184 TRP CH2 HH2 sing N N 185 TRP OXT HXT sing N N 186 TYR N CA sing N N 187 TYR N H sing N N 188 TYR N H2 sing N N 189 TYR CA C sing N N 190 TYR CA CB sing N N 191 TYR CA HA sing N N 192 TYR C O doub N N 193 TYR C OXT sing N N 194 TYR CB CG sing N N 195 TYR CB HB2 sing N N 196 TYR CB HB3 sing N N 197 TYR CG CD1 doub Y N 198 TYR CG CD2 sing Y N 199 TYR CD1 CE1 sing Y N 200 TYR CD1 HD1 sing N N 201 TYR CD2 CE2 doub Y N 202 TYR CD2 HD2 sing N N 203 TYR CE1 CZ doub Y N 204 TYR CE1 HE1 sing N N 205 TYR CE2 CZ sing Y N 206 TYR CE2 HE2 sing N N 207 TYR CZ OH sing N N 208 TYR OH HH sing N N 209 TYR OXT HXT sing N N 210 VAL N CA sing N N 211 VAL N H sing N N 212 VAL N H2 sing N N 213 VAL CA C sing N N 214 VAL CA CB sing N N 215 VAL CA HA sing N N 216 VAL C O doub N N 217 VAL C OXT sing N N 218 VAL CB CG1 sing N N 219 VAL CB CG2 sing N N 220 VAL CB HB sing N N 221 VAL CG1 HG11 sing N N 222 VAL CG1 HG12 sing N N 223 VAL CG1 HG13 sing N N 224 VAL CG2 HG21 sing N N 225 VAL CG2 HG22 sing N N 226 VAL CG2 HG23 sing N N 227 VAL OXT HXT sing N N 228 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1QK7 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #