HEADER CHAPERONE 13-SEP-17 6AZY TITLE CRYSTAL STRUCTURE OF HSP104 R328M/R757M MUTANT FROM CALCARISPORIELLA TITLE 2 THERMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN HSP104; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALCARISPORIELLA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 911321; SOURCE 4 STRAIN: CBS 279.70; SOURCE 5 GENE: CALTH2P4_003362; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS DISAGGREGASE, AAA+ ATPASE, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR K.MICHALSKA,L.BIGELOW,C.HATZOS-SKINTGES,R.JEDRZEJCZAK,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 04-OCT-23 6AZY 1 REMARK REVDAT 4 14-JUL-21 6AZY 1 JRNL REVDAT 3 01-JAN-20 6AZY 1 REMARK REVDAT 2 20-FEB-19 6AZY 1 REMARK REVDAT 1 03-OCT-18 6AZY 0 JRNL AUTH K.MICHALSKA,K.ZHANG,Z.M.MARCH,C.HATZOS-SKINTGES,G.PINTILIE, JRNL AUTH 2 L.BIGELOW,L.M.CASTELLANO,L.J.MILES,M.E.JACKREL,E.CHUANG, JRNL AUTH 3 R.JEDRZEJCZAK,J.SHORTER,W.CHIU,A.JOACHIMIAK JRNL TITL STRUCTURE OF CALCARISPORIELLA THERMOPHILA HSP104 JRNL TITL 2 DISAGGREGASE THAT ANTAGONIZES DIVERSE PROTEOTOXIC MISFOLDING JRNL TITL 3 EVENTS. JRNL REF STRUCTURE V. 27 449 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 30595457 JRNL DOI 10.1016/J.STR.2018.11.001 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2276) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3392 - 5.9899 1.00 2616 119 0.1686 0.2049 REMARK 3 2 5.9899 - 4.7609 1.00 2553 138 0.2005 0.2473 REMARK 3 3 4.7609 - 4.1610 1.00 2549 143 0.1651 0.2181 REMARK 3 4 4.1610 - 3.7815 1.00 2514 151 0.1789 0.2171 REMARK 3 5 3.7815 - 3.5109 1.00 2520 147 0.2054 0.2202 REMARK 3 6 3.5109 - 3.3042 1.00 2526 144 0.2185 0.2949 REMARK 3 7 3.3042 - 3.1389 1.00 2524 134 0.2358 0.3377 REMARK 3 8 3.1389 - 3.0024 1.00 2557 129 0.2643 0.3336 REMARK 3 9 3.0024 - 2.8869 1.00 2534 116 0.2549 0.3645 REMARK 3 10 2.8869 - 2.7874 1.00 2505 150 0.2386 0.3066 REMARK 3 11 2.7874 - 2.7003 0.99 2519 125 0.2313 0.2781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6531 REMARK 3 ANGLE : 1.167 8805 REMARK 3 CHIRALITY : 0.065 1014 REMARK 3 PLANARITY : 0.007 1167 REMARK 3 DIHEDRAL : 10.133 7323 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:144) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9497 80.9736 59.6284 REMARK 3 T TENSOR REMARK 3 T11: 0.4478 T22: 0.3933 REMARK 3 T33: 0.3374 T12: 0.1040 REMARK 3 T13: 0.0246 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 7.0129 L22: 6.2361 REMARK 3 L33: 4.4831 L12: -0.5388 REMARK 3 L13: 0.4224 L23: -0.0474 REMARK 3 S TENSOR REMARK 3 S11: -0.2604 S12: -0.0895 S13: 0.2392 REMARK 3 S21: -0.1525 S22: 0.2743 S23: 0.2877 REMARK 3 S31: -0.6097 S32: -0.3764 S33: -0.0671 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND (RESID 156:403 OR RESID 525:555)) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3466 28.0407 47.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.3275 T22: 0.2649 REMARK 3 T33: 0.3060 T12: -0.0356 REMARK 3 T13: -0.0381 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 5.2679 L22: 1.2010 REMARK 3 L33: 1.4081 L12: -0.3680 REMARK 3 L13: 0.6716 L23: -0.3891 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.0258 S13: -0.2232 REMARK 3 S21: -0.0493 S22: 0.0243 S23: 0.0585 REMARK 3 S31: 0.1532 S32: -0.1744 S33: -0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 404:524) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2765 33.9595 69.7326 REMARK 3 T TENSOR REMARK 3 T11: 0.3763 T22: 0.3246 REMARK 3 T33: 0.4420 T12: -0.0158 REMARK 3 T13: -0.0032 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.1952 L22: 0.9636 REMARK 3 L33: 0.6572 L12: -1.1455 REMARK 3 L13: 1.1739 L23: -0.1868 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: -0.0432 S13: 0.0980 REMARK 3 S21: 0.0397 S22: 0.0236 S23: -0.0147 REMARK 3 S31: -0.0142 S32: 0.0815 S33: -0.0652 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 556:767) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9835 14.6283 14.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.7508 T22: 0.5219 REMARK 3 T33: 1.3361 T12: -0.0292 REMARK 3 T13: -0.2000 T23: 0.0826 REMARK 3 L TENSOR REMARK 3 L11: 4.7440 L22: 3.3881 REMARK 3 L33: 3.6713 L12: 1.3992 REMARK 3 L13: -0.7409 L23: -0.0732 REMARK 3 S TENSOR REMARK 3 S11: 0.3630 S12: -0.1403 S13: -0.4552 REMARK 3 S21: -0.4223 S22: -0.1221 S23: 1.6208 REMARK 3 S31: 0.2446 S32: -0.6139 S33: -0.1479 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 768:863) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7384 -10.1605 22.3923 REMARK 3 T TENSOR REMARK 3 T11: 0.5063 T22: 0.4386 REMARK 3 T33: 0.6807 T12: 0.0547 REMARK 3 T13: 0.1576 T23: -0.0880 REMARK 3 L TENSOR REMARK 3 L11: 5.6653 L22: 6.2028 REMARK 3 L33: 8.8605 L12: -0.7183 REMARK 3 L13: 3.6204 L23: -3.2798 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.1481 S13: 0.4830 REMARK 3 S21: -0.8478 S22: -0.0818 S23: 0.2423 REMARK 3 S31: 0.2245 S32: -0.2401 S33: 0.1479 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1QVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CA ACETATE, 0.1 M MES/NAOH, PH REMARK 280 6.0, 10% PROPANOL, 5MM ADP, 10 MM MGCL2, CRYO 35% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.70667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.35333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.53000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.17667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.88333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY GEL FILTRATION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 PRO A 76 REMARK 465 PRO A 77 REMARK 465 PRO A 78 REMARK 465 THR A 79 REMARK 465 ASN A 145 REMARK 465 ARG A 146 REMARK 465 ARG A 147 REMARK 465 VAL A 148 REMARK 465 GLU A 149 REMARK 465 SER A 150 REMARK 465 LYS A 151 REMARK 465 SER A 152 REMARK 465 ALA A 153 REMARK 465 GLU A 154 REMARK 465 GLU A 155 REMARK 465 LYS A 248 REMARK 465 TYR A 249 REMARK 465 ARG A 250 REMARK 465 GLY A 283 REMARK 465 LYS A 284 REMARK 465 SER A 285 REMARK 465 GLU A 286 REMARK 465 GLY A 287 REMARK 465 VAL A 648 REMARK 465 GLY A 649 REMARK 465 ALA A 650 REMARK 465 PRO A 651 REMARK 465 PRO A 652 REMARK 465 GLY A 653 REMARK 465 TYR A 654 REMARK 465 ILE A 655 REMARK 465 GLY A 656 REMARK 465 HIS A 657 REMARK 465 ASP A 658 REMARK 465 GLU A 659 REMARK 465 GLY A 660 REMARK 465 GLY A 722 REMARK 465 ALA A 723 REMARK 465 ASP A 724 REMARK 465 LEU A 725 REMARK 465 PHE A 726 REMARK 465 GLU A 727 REMARK 465 LEU A 728 REMARK 465 ASP A 729 REMARK 465 GLU A 730 REMARK 465 GLY A 731 REMARK 465 ASP A 732 REMARK 465 LYS A 733 REMARK 465 VAL A 734 REMARK 465 SER A 735 REMARK 465 GLN A 736 REMARK 465 ALA A 737 REMARK 465 GLU A 864 REMARK 465 SER A 865 REMARK 465 PRO A 866 REMARK 465 ALA A 867 REMARK 465 PRO A 868 REMARK 465 TRP A 869 REMARK 465 ALA A 870 REMARK 465 ASP A 871 REMARK 465 GLU A 872 REMARK 465 ASP A 873 REMARK 465 MET A 874 REMARK 465 VAL A 875 REMARK 465 GLU A 876 REMARK 465 ASP A 877 REMARK 465 GLU A 878 REMARK 465 ASP A 879 REMARK 465 MET A 880 REMARK 465 GLU A 881 REMARK 465 ILE A 882 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 594 NH2 ARG A 786 6554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 143 -74.73 -66.14 REMARK 500 ASP A 226 55.04 -92.84 REMARK 500 ARG A 301 4.82 -65.50 REMARK 500 SER A 338 -178.57 -64.86 REMARK 500 ILE A 377 79.57 -104.17 REMARK 500 LEU A 528 77.26 -115.18 REMARK 500 ASN A 625 -10.86 76.88 REMARK 500 GLN A 693 -76.32 -64.31 REMARK 500 ASN A 720 1.57 -66.78 REMARK 500 LEU A 826 -55.91 -123.93 REMARK 500 THR A 848 -158.92 -144.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC114008 RELATED DB: TARGETTRACK DBREF 6AZY A -2 882 PDB 6AZY 6AZY -2 882 SEQRES 1 A 885 SER ASN ALA MET SER SER MET GLN PHE THR ASP LYS ALA SEQRES 2 A 885 THR GLU THR LEU ASN ALA ALA ALA LYS TYR ALA ALA GLU SEQRES 3 A 885 ASN SER HIS VAL GLN LEU HIS PRO SER HIS VAL ALA VAL SEQRES 4 A 885 VAL MET LEU ASP GLU GLU ASN SER LEU PHE ARG SER ILE SEQRES 5 A 885 LEU GLU LYS ALA GLY GLY ASP VAL VAL SER ILE GLU ARG SEQRES 6 A 885 GLY PHE LYS LYS ILE MET VAL ARG GLN PRO SER GLN ASP SEQRES 7 A 885 PRO PRO PRO THR GLU MET GLY HIS SER PRO GLU LEU ALA SEQRES 8 A 885 LYS LEU LEU HIS TYR ALA HIS GLU HIS MET LYS LYS GLN SEQRES 9 A 885 ARG ASP LEU TYR ILE ALA GLN ASP HIS LEU ILE LEU ALA SEQRES 10 A 885 LEU ALA ASP LEU PRO SER MET ALA GLN VAL LEU LYS GLU SEQRES 11 A 885 GLY GLY VAL THR LYS LYS SER LEU GLU ASN ALA VAL THR SEQRES 12 A 885 HIS VAL ARG GLY ASN ARG ARG VAL GLU SER LYS SER ALA SEQRES 13 A 885 GLU GLU ALA TYR GLU ALA LEU SER LYS TYR CYS ILE ASP SEQRES 14 A 885 LEU THR GLU LEU ALA ALA SER GLY LYS LEU ASP PRO VAL SEQRES 15 A 885 ILE GLY ARG ASP GLU ILE ILE SER ARG VAL ILE ARG VAL SEQRES 16 A 885 LEU SER ARG ARG THR LYS ASN ASN PRO CYS LEU VAL GLY SEQRES 17 A 885 GLU PRO GLY VAL GLY LYS THR ALA ILE ALA GLU GLY LEU SEQRES 18 A 885 ALA ASN ARG ILE VAL LYS GLY ASP ILE PRO SER SER LEU SEQRES 19 A 885 GLN LYS LYS VAL TYR SER LEU ASP ILE GLY SER LEU LEU SEQRES 20 A 885 ALA GLY ALA LYS TYR ARG GLY GLU PHE GLU GLU ARG LEU SEQRES 21 A 885 LYS ALA VAL LEU LYS GLU LEU LYS GLU ALA GLN ALA ILE SEQRES 22 A 885 VAL PHE ILE ASP GLU ILE HIS THR VAL LEU GLY ALA GLY SEQRES 23 A 885 LYS SER GLU GLY ALA ILE ASP ALA ALA ASN LEU LEU LYS SEQRES 24 A 885 PRO MET LEU ALA ARG GLY GLU LEU ARG CYS ILE GLY ALA SEQRES 25 A 885 THR THR LEU THR GLU TYR ARG GLN TYR VAL GLU LYS ASP SEQRES 26 A 885 PRO ALA PHE GLU ARG MET PHE GLN LEU VAL MET VAL GLU SEQRES 27 A 885 GLU PRO SER VAL THR ASP THR ILE SER ILE LEU ARG GLY SEQRES 28 A 885 LEU LYS GLU ARG TYR GLU THR HIS HIS GLY VAL ARG ILE SEQRES 29 A 885 ALA ASP ALA ALA ILE VAL ALA ALA ALA GLN LEU ALA ALA SEQRES 30 A 885 ARG TYR ILE THR GLN ARG PHE MET PRO ASP LYS ALA ILE SEQRES 31 A 885 ASP LEU ILE ASP GLU ALA CYS ALA ASN THR ARG VAL GLN SEQRES 32 A 885 LEU ASP SER GLN PRO GLU ALA ILE ASP LYS LEU GLU ARG SEQRES 33 A 885 ARG HIS LEU GLN LEU GLU VAL GLU ALA THR ALA LEU GLU SEQRES 34 A 885 LYS GLU LYS ASP ALA ALA SER LYS GLN ARG LEU GLN GLU SEQRES 35 A 885 VAL ARG ALA GLU MET ALA ARG ILE GLN GLU GLU LEU ARG SEQRES 36 A 885 PRO LEU LYS MET LYS TYR GLU SER GLU LYS GLY ARG LEU SEQRES 37 A 885 ASP GLU ILE ARG ASN LEU SER GLN ARG LEU ASP GLU LEU SEQRES 38 A 885 LYS ALA LYS ALA GLU ASP ALA GLU ARG ARG TYR ASP LEU SEQRES 39 A 885 ALA ARG ALA ALA ASP ILE ARG TYR TYR ALA ILE PRO ASP SEQRES 40 A 885 LEU GLU LYS ARG LEU ALA GLN LEU GLN ALA GLU LYS SER SEQRES 41 A 885 GLN ALA ASP ALA GLU ARG ALA ASP GLY LEU LEU ALA GLU SEQRES 42 A 885 VAL VAL GLY PRO ASP GLN ILE MET GLU VAL VAL SER ARG SEQRES 43 A 885 TRP THR GLY ILE PRO VAL SER ASN LEU GLN ARG SER GLU SEQRES 44 A 885 LYS GLU LYS LEU LEU HIS MET GLU GLU TYR MET LYS GLN SEQRES 45 A 885 HIS VAL VAL GLY GLN ASP GLU ALA ILE LYS ALA ILE CYS SEQRES 46 A 885 ASP ALA ILE ARG LEU SER ARG THR GLY LEU GLN ASN ARG SEQRES 47 A 885 ASN ARG PRO LEU ALA SER PHE LEU PHE LEU GLY PRO THR SEQRES 48 A 885 GLY CYS GLY LYS THR LEU CYS VAL LYS GLU LEU ALA ALA SEQRES 49 A 885 PHE LEU PHE ASN ASP PRO GLY ALA ILE VAL ARG ILE ASP SEQRES 50 A 885 MET SER GLU TYR MET GLU LYS HIS ALA VAL SER ARG LEU SEQRES 51 A 885 VAL GLY ALA PRO PRO GLY TYR ILE GLY HIS ASP GLU GLY SEQRES 52 A 885 GLY GLN LEU THR GLU ALA VAL ARG ARG ARG PRO TYR THR SEQRES 53 A 885 VAL VAL LEU PHE ASP GLU MET GLU LYS ALA HIS LYS ASP SEQRES 54 A 885 VAL SER ASN LEU LEU LEU GLN ILE LEU ASP ASP GLY HIS SEQRES 55 A 885 CYS THR ASP SER LYS GLY ARG ARG VAL ASP PHE LYS ASN SEQRES 56 A 885 THR ILE ILE VAL MET THR SER ASN LEU GLY ALA ASP LEU SEQRES 57 A 885 PHE GLU LEU ASP GLU GLY ASP LYS VAL SER GLN ALA THR SEQRES 58 A 885 LYS ASN ALA VAL LEU ALA THR ALA ARG ARG HIS PHE ALA SEQRES 59 A 885 ASN GLU PHE ILE ASN MET ILE ASP GLU LEU ILE VAL PHE SEQRES 60 A 885 ASN ARG LEU THR PRO SER ASN ILE ARG LYS ILE VAL ASP SEQRES 61 A 885 VAL ARG LEU LYS GLU VAL GLN GLU ARG LEU ASP GLU LYS SEQRES 62 A 885 GLN ILE THR LEU ASP VAL ASP ASP LYS ALA LYS ASP LEU SEQRES 63 A 885 LEU ALA GLN GLN GLY PHE ASP PRO VAL TYR GLY ALA ARG SEQRES 64 A 885 PRO LEU ASN ARG LEU ILE GLN HIS ALA LEU LEU THR GLN SEQRES 65 A 885 LEU SER ARG LEU LEU LEU ASP GLY GLY VAL ARG PRO GLY SEQRES 66 A 885 GLU ILE ALA LYS VAL THR VAL ASP GLN GLU GLY GLU ILE SEQRES 67 A 885 ILE VAL ILE ARG ASN HIS GLY ILE GLU SER PRO ALA PRO SEQRES 68 A 885 TRP ALA ASP GLU ASP MET VAL GLU ASP GLU ASP MET GLU SEQRES 69 A 885 ILE HET ADP A 901 27 HET ADP A 902 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP 2(C10 H15 N5 O10 P2) HELIX 1 AA1 THR A 7 ASN A 24 1 18 HELIX 2 AA2 HIS A 30 ASP A 40 1 11 HELIX 3 AA3 SER A 44 ALA A 53 1 10 HELIX 4 AA4 ASP A 56 GLN A 71 1 16 HELIX 5 AA5 SER A 84 GLN A 101 1 18 HELIX 6 AA6 ALA A 107 ALA A 116 1 10 HELIX 7 AA7 LEU A 118 GLY A 128 1 11 HELIX 8 AA8 THR A 131 GLY A 144 1 14 HELIX 9 AA9 TYR A 157 TYR A 163 1 7 HELIX 10 AB1 LEU A 167 SER A 173 1 7 HELIX 11 AB2 ARG A 182 LEU A 193 1 12 HELIX 12 AB3 GLY A 210 GLY A 225 1 16 HELIX 13 AB4 PRO A 228 GLN A 232 5 5 HELIX 14 AB5 ASP A 239 ALA A 245 1 7 HELIX 15 AB6 GLU A 252 GLN A 268 1 17 HELIX 16 AB7 ILE A 276 LEU A 280 5 5 HELIX 17 AB8 ALA A 291 ARG A 301 1 11 HELIX 18 AB9 THR A 311 VAL A 319 1 9 HELIX 19 AC1 ASP A 322 ARG A 327 1 6 HELIX 20 AC2 SER A 338 GLY A 358 1 21 HELIX 21 AC3 ALA A 362 ILE A 377 1 16 HELIX 22 AC4 PRO A 383 SER A 403 1 21 HELIX 23 AC5 PRO A 405 GLU A 426 1 22 HELIX 24 AC6 ASP A 430 ARG A 488 1 59 HELIX 25 AC7 ASP A 490 TYR A 500 1 11 HELIX 26 AC8 TYR A 500 ALA A 524 1 25 HELIX 27 AC9 GLY A 533 GLY A 546 1 14 HELIX 28 AD1 PRO A 548 LEU A 552 5 5 HELIX 29 AD2 SER A 555 HIS A 562 1 8 HELIX 30 AD3 HIS A 562 GLN A 569 1 8 HELIX 31 AD4 GLN A 574 THR A 590 1 17 HELIX 32 AD5 GLY A 611 PHE A 624 1 14 HELIX 33 AD6 SER A 636 LYS A 641 5 6 HELIX 34 AD7 HIS A 642 LEU A 647 1 6 HELIX 35 AD8 GLN A 662 ARG A 670 1 9 HELIX 36 AD9 GLU A 679 ALA A 683 5 5 HELIX 37 AE1 HIS A 684 GLY A 698 1 15 HELIX 38 AE2 LYS A 739 ARG A 748 1 10 HELIX 39 AE3 ALA A 751 ASN A 756 1 6 HELIX 40 AE4 THR A 768 ASP A 788 1 21 HELIX 41 AE5 GLU A 789 GLN A 791 5 3 HELIX 42 AE6 ASP A 797 PHE A 809 1 13 HELIX 43 AE7 PRO A 817 LEU A 826 1 10 HELIX 44 AE8 LEU A 826 ASP A 836 1 11 SHEET 1 AA1 2 GLN A 28 LEU A 29 0 SHEET 2 AA1 2 GLY A 82 HIS A 83 1 O GLY A 82 N LEU A 29 SHEET 1 AA2 6 CYS A 164 ASP A 166 0 SHEET 2 AA2 6 VAL A 235 LEU A 238 -1 O SER A 237 N ILE A 165 SHEET 3 AA2 6 ILE A 270 ASP A 274 1 O PHE A 272 N LEU A 238 SHEET 4 AA2 6 ARG A 305 THR A 310 1 O ILE A 307 N VAL A 271 SHEET 5 AA2 6 ASN A 200 VAL A 204 1 N PRO A 201 O GLY A 308 SHEET 6 AA2 6 PHE A 329 MET A 333 1 O GLN A 330 N CYS A 202 SHEET 1 AA3 2 ARG A 360 ILE A 361 0 SHEET 2 AA3 2 VAL A 531 VAL A 532 1 O VAL A 532 N ARG A 360 SHEET 1 AA4 5 ILE A 630 ASP A 634 0 SHEET 2 AA4 5 THR A 673 ASP A 678 1 O VAL A 674 N VAL A 631 SHEET 3 AA4 5 THR A 713 SER A 719 1 O ILE A 714 N VAL A 675 SHEET 4 AA4 5 ALA A 600 LEU A 605 1 N PHE A 602 O ILE A 715 SHEET 5 AA4 5 GLU A 760 VAL A 763 1 O ILE A 762 N LEU A 605 SHEET 1 AA5 2 HIS A 699 THR A 701 0 SHEET 2 AA5 2 ARG A 707 ASP A 709 -1 O VAL A 708 N CYS A 700 SHEET 1 AA6 3 THR A 793 VAL A 796 0 SHEET 2 AA6 3 ILE A 844 VAL A 849 1 O VAL A 847 N ASP A 795 SHEET 3 AA6 3 ILE A 855 VAL A 857 -1 O ILE A 856 N THR A 848 CISPEP 1 MET A 382 PRO A 383 0 0.28 SITE 1 AC1 12 PRO A 178 VAL A 179 ILE A 180 GLY A 208 SITE 2 AC1 12 GLY A 210 LYS A 211 THR A 212 ALA A 213 SITE 3 AC1 12 ILE A 345 PRO A 383 ASP A 384 ILE A 387 SITE 1 AC2 10 HIS A 570 VAL A 572 THR A 608 GLY A 609 SITE 2 AC2 10 CYS A 610 GLY A 611 LYS A 612 THR A 613 SITE 3 AC2 10 ARG A 779 ARG A 816 CRYST1 139.173 139.173 97.060 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007185 0.004148 0.000000 0.00000 SCALE2 0.000000 0.008297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010303 0.00000