data_6BEQ # _entry.id 6BEQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6BEQ pdb_00006beq 10.2210/pdb6beq/pdb WWPDB D_1000230779 ? ? BMRB 30359 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of de novo macrocycle design10.1' _pdbx_database_related.db_id 30359 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6BEQ _pdbx_database_status.recvd_initial_deposition_date 2017-10-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shortridge, M.D.' 1 0000-0003-2825-6836 'Hosseinzadeh, P.' 2 ? 'Pardo-Avila, F.' 3 ? 'Varani, G.' 4 ? 'Baker, D.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 358 _citation.language ? _citation.page_first 1461 _citation.page_last 1466 _citation.title 'Comprehensive computational design of ordered peptide macrocycles.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aap7577 _citation.pdbx_database_id_PubMed 29242347 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hosseinzadeh, P.' 1 ? primary 'Bhardwaj, G.' 2 ? primary 'Mulligan, V.K.' 3 ? primary 'Shortridge, M.D.' 4 ? primary 'Craven, T.W.' 5 ? primary 'Pardo-Avila, F.' 6 ? primary 'Rettie, S.A.' 7 ? primary 'Kim, D.E.' 8 ? primary 'Silva, D.A.' 9 ? primary 'Ibrahim, Y.M.' 10 ? primary 'Webb, I.K.' 11 ? primary 'Cort, J.R.' 12 ? primary 'Adkins, J.N.' 13 ? primary 'Varani, G.' 14 ? primary 'Baker, D.' 15 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'AAR(DVA)(DPR)R(DLE)(DTH)PE' _entity.formula_weight 1111.294 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'AAR(DVA)(DPR)R(DLE)(DTH)PE' _entity_poly.pdbx_seq_one_letter_code_can AARVPRLTPE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 ARG n 1 4 DVA n 1 5 DPR n 1 6 ARG n 1 7 DLE n 1 8 DTH n 1 9 PRO n 1 10 GLU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6BEQ _struct_ref.pdbx_db_accession 6BEQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6BEQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6BEQ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 DTH 'D-peptide linking' . D-THREONINE ? 'C4 H9 N O3' 119.119 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label cond_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5 mg/mL Design 10.1, 5 % [U-2H] glycerol, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label bipolar_1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6BEQ _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6BEQ _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6BEQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement GROMACS 2016.1 Abraham 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6BEQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6BEQ _struct.title 'Solution structure of de novo macrocycle design10.1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6BEQ _struct_keywords.text 'macrocycle, de novo, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ARG 3 C ? ? ? 1_555 A DVA 4 N ? ? A ARG 3 A DVA 4 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale2 covale both ? A DVA 4 C ? ? ? 1_555 A DPR 5 N ? ? A DVA 4 A DPR 5 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A DPR 5 C ? ? ? 1_555 A ARG 6 N ? ? A DPR 5 A ARG 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A ARG 6 C ? ? ? 1_555 A DLE 7 N ? ? A ARG 6 A DLE 7 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A DLE 7 C ? ? ? 1_555 A DTH 8 N ? ? A DLE 7 A DTH 8 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A DTH 8 C ? ? ? 1_555 A PRO 9 N ? ? A DTH 8 A PRO 9 1_555 ? ? ? ? ? ? ? 1.343 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6BEQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _database_PDB_caveat.text 'DTH A 8 HAS WRONG CHIRALITY AT ATOM CB' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 DVA 4 4 4 DVA DVA A . n A 1 5 DPR 5 5 5 DPR DPR A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 DLE 7 7 7 DLE DLE A . n A 1 8 DTH 8 8 8 DTH DTH A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 GLU 10 10 10 GLU GLU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-01-10 2 'Structure model' 1 1 2020-01-01 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_nmr_software 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Design 10.1' 5 ? mg/mL 'natural abundance' 1 glycerol 5 ? % '[U-2H]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 2 2 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 3 3 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 4 4 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 5 5 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 6 5 N A ALA 1 ? ? O A GLU 10 ? ? 2.17 7 6 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 8 7 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 9 8 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 10 9 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 11 10 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 12 11 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 13 12 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 14 13 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 15 14 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 16 15 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 17 16 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 18 17 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 19 18 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 20 19 N A ALA 1 ? ? C A GLU 10 ? ? 1.33 21 20 N A ALA 1 ? ? C A GLU 10 ? ? 1.34 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A ALA 2 ? ? CA A ALA 2 ? ? CB A ALA 2 ? ? 101.06 110.10 -9.04 1.40 N 2 1 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 123.99 120.30 3.69 0.50 N 3 1 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 117.00 120.30 -3.30 0.50 N 4 1 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 126.05 120.30 5.75 0.50 N 5 1 CB A DLE 7 ? ? CG A DLE 7 ? ? CD1 A DLE 7 ? ? 124.08 111.00 13.08 1.70 N 6 3 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 124.35 120.30 4.05 0.50 N 7 4 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 126.12 120.30 5.82 0.50 N 8 5 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 116.05 120.30 -4.25 0.50 N 9 5 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 124.83 120.30 4.53 0.50 N 10 5 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 127.10 120.30 6.80 0.50 N 11 5 N A PRO 9 ? ? CA A PRO 9 ? ? CB A PRO 9 ? ? 110.60 103.30 7.30 1.20 N 12 6 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 124.19 120.30 3.89 0.50 N 13 7 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 117.17 120.30 -3.13 0.50 N 14 7 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 123.72 120.30 3.42 0.50 N 15 8 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 115.33 120.30 -4.97 0.50 N 16 8 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 128.73 120.30 8.43 0.50 N 17 8 N A DPR 5 ? ? CD A DPR 5 ? ? CG A DPR 5 ? ? 113.06 103.20 9.86 1.50 N 18 8 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 127.77 120.30 7.47 0.50 N 19 9 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 123.93 120.30 3.63 0.50 N 20 9 C A DTH 8 ? ? N A PRO 9 ? ? CA A PRO 9 ? ? 128.51 119.30 9.21 1.50 Y 21 10 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 114.52 120.30 -5.78 0.50 N 22 10 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 126.47 120.30 6.17 0.50 N 23 10 C A DVA 4 ? ? N A DPR 5 ? ? CA A DPR 5 ? ? 129.40 119.30 10.10 1.50 Y 24 10 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 123.52 120.30 3.22 0.50 N 25 11 NH1 A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 112.55 119.40 -6.85 1.10 N 26 11 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 126.41 120.30 6.11 0.50 N 27 12 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 123.45 120.30 3.15 0.50 N 28 12 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 125.35 120.30 5.05 0.50 N 29 13 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 116.76 120.30 -3.54 0.50 N 30 13 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 124.13 120.30 3.83 0.50 N 31 14 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 116.36 120.30 -3.94 0.50 N 32 14 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 125.29 120.30 4.99 0.50 N 33 14 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 124.88 120.30 4.58 0.50 N 34 15 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 124.30 120.30 4.00 0.50 N 35 15 N A DPR 5 ? ? CA A DPR 5 ? ? CB A DPR 5 ? ? 112.31 103.30 9.01 1.20 N 36 16 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 116.90 120.30 -3.40 0.50 N 37 16 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 126.53 120.30 6.23 0.50 N 38 16 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 115.66 120.30 -4.64 0.50 N 39 16 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 128.42 120.30 8.12 0.50 N 40 17 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 126.04 120.30 5.74 0.50 N 41 17 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 117.16 120.30 -3.14 0.50 N 42 17 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 127.69 120.30 7.39 0.50 N 43 18 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 123.79 120.30 3.49 0.50 N 44 19 N A ALA 1 ? ? CA A ALA 1 ? ? CB A ALA 1 ? ? 100.12 110.10 -9.98 1.40 N 45 19 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH1 A ARG 3 ? ? 116.48 120.30 -3.82 0.50 N 46 19 NE A ARG 3 ? ? CZ A ARG 3 ? ? NH2 A ARG 3 ? ? 125.77 120.30 5.47 0.50 N 47 19 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH1 A ARG 6 ? ? 113.45 120.30 -6.85 0.50 N 48 19 NE A ARG 6 ? ? CZ A ARG 6 ? ? NH2 A ARG 6 ? ? 124.57 120.30 4.27 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 PRO A 9 ? ? -60.12 1.14 2 3 ARG A 3 ? ? -133.11 -31.30 3 5 ARG A 3 ? ? -121.07 -50.59 4 6 ARG A 3 ? ? -140.68 -12.36 5 7 PRO A 9 ? ? -49.18 -6.85 6 9 ARG A 3 ? ? -141.00 -22.24 7 11 ARG A 3 ? ? -141.03 -18.90 8 12 ARG A 3 ? ? -145.54 -29.36 9 14 ARG A 3 ? ? -127.41 -53.78 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 11 DPR A 5 ? ? ARG A 6 ? ? 143.13 2 12 ARG A 3 ? ? DVA A 4 ? ? 146.11 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 ARG A 3 ? ? 0.097 'SIDE CHAIN' 2 9 ARG A 6 ? ? 0.102 'SIDE CHAIN' 3 12 ARG A 6 ? ? 0.125 'SIDE CHAIN' 4 18 ARG A 6 ? ? 0.095 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CB ? A DTH 8 ? 'WRONG HAND' . 2 2 CB ? A DTH 8 ? 'WRONG HAND' . 3 3 CB ? A DTH 8 ? 'WRONG HAND' . 4 4 CB ? A DTH 8 ? 'WRONG HAND' . 5 5 CB ? A DTH 8 ? 'WRONG HAND' . 6 6 CB ? A DTH 8 ? 'WRONG HAND' . 7 7 CB ? A DTH 8 ? 'WRONG HAND' . 8 8 CB ? A DTH 8 ? 'WRONG HAND' . 9 9 CB ? A DTH 8 ? 'WRONG HAND' . 10 10 CB ? A DTH 8 ? 'WRONG HAND' . 11 11 CB ? A DTH 8 ? 'WRONG HAND' . 12 12 CB ? A DTH 8 ? 'WRONG HAND' . 13 13 CB ? A DTH 8 ? 'WRONG HAND' . 14 14 CB ? A DTH 8 ? 'WRONG HAND' . 15 15 CB ? A DTH 8 ? 'WRONG HAND' . 16 16 CB ? A DTH 8 ? 'WRONG HAND' . 17 17 CB ? A DTH 8 ? 'WRONG HAND' . 18 18 CB ? A DTH 8 ? 'WRONG HAND' . 19 19 CB ? A DTH 8 ? 'WRONG HAND' . 20 20 CB ? A DTH 8 ? 'WRONG HAND' . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 DLE N N N N 41 DLE CA C N R 42 DLE CB C N N 43 DLE CG C N N 44 DLE CD1 C N N 45 DLE CD2 C N N 46 DLE C C N N 47 DLE O O N N 48 DLE OXT O N N 49 DLE H H N N 50 DLE H2 H N N 51 DLE HA H N N 52 DLE HB2 H N N 53 DLE HB3 H N N 54 DLE HG H N N 55 DLE HD11 H N N 56 DLE HD12 H N N 57 DLE HD13 H N N 58 DLE HD21 H N N 59 DLE HD22 H N N 60 DLE HD23 H N N 61 DLE HXT H N N 62 DPR N N N N 63 DPR CA C N R 64 DPR CB C N N 65 DPR CG C N N 66 DPR CD C N N 67 DPR C C N N 68 DPR O O N N 69 DPR OXT O N N 70 DPR H H N N 71 DPR HA H N N 72 DPR HB2 H N N 73 DPR HB3 H N N 74 DPR HG2 H N N 75 DPR HG3 H N N 76 DPR HD2 H N N 77 DPR HD3 H N N 78 DPR HXT H N N 79 DTH N N N N 80 DTH CA C N R 81 DTH CB C N S 82 DTH CG2 C N N 83 DTH OG1 O N N 84 DTH C C N N 85 DTH O O N N 86 DTH OXT O N N 87 DTH H H N N 88 DTH H2 H N N 89 DTH HA H N N 90 DTH HB H N N 91 DTH HG21 H N N 92 DTH HG22 H N N 93 DTH HG23 H N N 94 DTH HG1 H N N 95 DTH HXT H N N 96 DVA N N N N 97 DVA CA C N R 98 DVA CB C N N 99 DVA CG1 C N N 100 DVA CG2 C N N 101 DVA C C N N 102 DVA O O N N 103 DVA OXT O N N 104 DVA H H N N 105 DVA H2 H N N 106 DVA HA H N N 107 DVA HB H N N 108 DVA HG11 H N N 109 DVA HG12 H N N 110 DVA HG13 H N N 111 DVA HG21 H N N 112 DVA HG22 H N N 113 DVA HG23 H N N 114 DVA HXT H N N 115 GLU N N N N 116 GLU CA C N S 117 GLU C C N N 118 GLU O O N N 119 GLU CB C N N 120 GLU CG C N N 121 GLU CD C N N 122 GLU OE1 O N N 123 GLU OE2 O N N 124 GLU OXT O N N 125 GLU H H N N 126 GLU H2 H N N 127 GLU HA H N N 128 GLU HB2 H N N 129 GLU HB3 H N N 130 GLU HG2 H N N 131 GLU HG3 H N N 132 GLU HE2 H N N 133 GLU HXT H N N 134 PRO N N N N 135 PRO CA C N S 136 PRO C C N N 137 PRO O O N N 138 PRO CB C N N 139 PRO CG C N N 140 PRO CD C N N 141 PRO OXT O N N 142 PRO H H N N 143 PRO HA H N N 144 PRO HB2 H N N 145 PRO HB3 H N N 146 PRO HG2 H N N 147 PRO HG3 H N N 148 PRO HD2 H N N 149 PRO HD3 H N N 150 PRO HXT H N N 151 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 DLE N CA sing N N 39 DLE N H sing N N 40 DLE N H2 sing N N 41 DLE CA CB sing N N 42 DLE CA C sing N N 43 DLE CA HA sing N N 44 DLE CB CG sing N N 45 DLE CB HB2 sing N N 46 DLE CB HB3 sing N N 47 DLE CG CD1 sing N N 48 DLE CG CD2 sing N N 49 DLE CG HG sing N N 50 DLE CD1 HD11 sing N N 51 DLE CD1 HD12 sing N N 52 DLE CD1 HD13 sing N N 53 DLE CD2 HD21 sing N N 54 DLE CD2 HD22 sing N N 55 DLE CD2 HD23 sing N N 56 DLE C O doub N N 57 DLE C OXT sing N N 58 DLE OXT HXT sing N N 59 DPR N CA sing N N 60 DPR N CD sing N N 61 DPR N H sing N N 62 DPR CA CB sing N N 63 DPR CA C sing N N 64 DPR CA HA sing N N 65 DPR CB CG sing N N 66 DPR CB HB2 sing N N 67 DPR CB HB3 sing N N 68 DPR CG CD sing N N 69 DPR CG HG2 sing N N 70 DPR CG HG3 sing N N 71 DPR CD HD2 sing N N 72 DPR CD HD3 sing N N 73 DPR C O doub N N 74 DPR C OXT sing N N 75 DPR OXT HXT sing N N 76 DTH N CA sing N N 77 DTH N H sing N N 78 DTH N H2 sing N N 79 DTH CA CB sing N N 80 DTH CA C sing N N 81 DTH CA HA sing N N 82 DTH CB CG2 sing N N 83 DTH CB OG1 sing N N 84 DTH CB HB sing N N 85 DTH CG2 HG21 sing N N 86 DTH CG2 HG22 sing N N 87 DTH CG2 HG23 sing N N 88 DTH OG1 HG1 sing N N 89 DTH C O doub N N 90 DTH C OXT sing N N 91 DTH OXT HXT sing N N 92 DVA N CA sing N N 93 DVA N H sing N N 94 DVA N H2 sing N N 95 DVA CA CB sing N N 96 DVA CA C sing N N 97 DVA CA HA sing N N 98 DVA CB CG1 sing N N 99 DVA CB CG2 sing N N 100 DVA CB HB sing N N 101 DVA CG1 HG11 sing N N 102 DVA CG1 HG12 sing N N 103 DVA CG1 HG13 sing N N 104 DVA CG2 HG21 sing N N 105 DVA CG2 HG22 sing N N 106 DVA CG2 HG23 sing N N 107 DVA C O doub N N 108 DVA C OXT sing N N 109 DVA OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 PRO N CA sing N N 129 PRO N CD sing N N 130 PRO N H sing N N 131 PRO CA C sing N N 132 PRO CA CB sing N N 133 PRO CA HA sing N N 134 PRO C O doub N N 135 PRO C OXT sing N N 136 PRO CB CG sing N N 137 PRO CB HB2 sing N N 138 PRO CB HB3 sing N N 139 PRO CG CD sing N N 140 PRO CG HG2 sing N N 141 PRO CG HG3 sing N N 142 PRO CD HD2 sing N N 143 PRO CD HD3 sing N N 144 PRO OXT HXT sing N N 145 # _pdbx_audit_support.funding_organization 'Department of Health & Human Services (HHS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 5R01GM103834 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #