HEADER VIRAL PROTEIN 13-NOV-17 6BM8 TITLE CRYSTAL STRUCTURE OF GLYCOPROTEIN B FROM HERPES SIMPLEX VIRUS TYPE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 72-904; COMPND 5 SYNONYM: GB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: HHV-1; SOURCE 4 ORGANISM_TAXID: 10298; SOURCE 5 GENE: UL27, GB, HHV1GP041; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS VIRAL PROTEIN, FUSOGEN, BITOPIC MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.S.COOPER,E.E.HELDWEIN REVDAT 6 04-OCT-23 6BM8 1 HETSYN REVDAT 5 29-JUL-20 6BM8 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 11-DEC-19 6BM8 1 REMARK REVDAT 3 20-FEB-19 6BM8 1 REMARK REVDAT 2 31-OCT-18 6BM8 1 JRNL REVDAT 1 16-MAY-18 6BM8 0 JRNL AUTH R.S.COOPER,E.R.GEORGIEVA,P.P.BORBAT,J.H.FREED,E.E.HELDWEIN JRNL TITL STRUCTURAL BASIS FOR MEMBRANE ANCHORING AND FUSION JRNL TITL 2 REGULATION OF THE HERPES SIMPLEX VIRUS FUSOGEN GB. JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 416 2018 JRNL REFN ESSN 1545-9985 JRNL PMID 29728654 JRNL DOI 10.1038/S41594-018-0060-6 REMARK 2 REMARK 2 RESOLUTION. 4.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 17450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1101.9045 - 9.3850 0.94 1382 152 0.2282 0.2499 REMARK 3 2 9.3850 - 7.4498 0.97 1323 146 0.2324 0.2230 REMARK 3 3 7.4498 - 6.5083 0.99 1342 149 0.2564 0.2486 REMARK 3 4 6.5083 - 5.9133 1.00 1314 147 0.2877 0.3215 REMARK 3 5 5.9133 - 5.4895 0.99 1322 146 0.3037 0.3712 REMARK 3 6 5.4895 - 5.1659 0.97 1272 142 0.3067 0.3001 REMARK 3 7 5.1659 - 4.9072 0.99 1305 145 0.2865 0.3094 REMARK 3 8 4.9072 - 4.6936 0.99 1308 144 0.2904 0.4009 REMARK 3 9 4.6936 - 4.5129 1.00 1310 147 0.3021 0.2840 REMARK 3 10 4.5129 - 4.3571 1.00 1291 142 0.3231 0.3305 REMARK 3 11 4.3571 - 4.2209 0.99 1295 143 0.3438 0.3593 REMARK 3 12 4.2209 - 4.1003 0.96 1244 139 0.3606 0.3597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 164.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 190.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5533 REMARK 3 ANGLE : 1.011 7536 REMARK 3 CHIRALITY : 0.057 842 REMARK 3 PLANARITY : 0.008 976 REMARK 3 DIHEDRAL : 7.965 3271 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19003 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.990 REMARK 200 RESOLUTION RANGE LOW (A) : 101.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 1.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 4000, 0.1 M TRIS HCL PH 7.5, REMARK 280 0.1 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 59.29850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.23600 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 266.85867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 59.29850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 34.23600 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 266.85867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 59.29850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 34.23600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 266.85867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 59.29850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 34.23600 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 266.85867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 59.29850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 34.23600 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 266.85867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 59.29850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 34.23600 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 266.85867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.47201 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 533.71733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 68.47201 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 533.71733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 68.47201 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 533.71733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 68.47201 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 533.71733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 68.47201 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 533.71733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 68.47201 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 533.71733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 44470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 96830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 59.29850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -102.70801 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 118.59700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 72 REMARK 465 LYS A 73 REMARK 465 LYS A 74 REMARK 465 PRO A 75 REMARK 465 LYS A 76 REMARK 465 ASN A 77 REMARK 465 PRO A 78 REMARK 465 THR A 79 REMARK 465 PRO A 80 REMARK 465 PRO A 81 REMARK 465 ARG A 82 REMARK 465 PRO A 83 REMARK 465 ALA A 84 REMARK 465 GLY A 85 REMARK 465 ASP A 86 REMARK 465 ASN A 87 REMARK 465 ALA A 88 REMARK 465 THR A 89 REMARK 465 VAL A 90 REMARK 465 ALA A 91 REMARK 465 ALA A 92 REMARK 465 GLY A 93 REMARK 465 HIS A 94 REMARK 465 ALA A 95 REMARK 465 THR A 96 REMARK 465 LEU A 97 REMARK 465 ARG A 98 REMARK 465 GLU A 99 REMARK 465 HIS A 100 REMARK 465 LEU A 101 REMARK 465 PRO A 483 REMARK 465 PRO A 484 REMARK 465 GLY A 485 REMARK 465 ALA A 486 REMARK 465 SER A 487 REMARK 465 ALA A 488 REMARK 465 ASN A 489 REMARK 465 MET A 731 REMARK 465 PHE A 732 REMARK 465 ALA A 733 REMARK 465 GLY A 734 REMARK 465 LEU A 735 REMARK 465 GLY A 736 REMARK 465 ALA A 737 REMARK 465 PHE A 738 REMARK 465 PHE A 739 REMARK 465 GLU A 740 REMARK 465 GLY A 741 REMARK 465 MET A 742 REMARK 465 GLY A 743 REMARK 465 ASP A 744 REMARK 465 LEU A 745 REMARK 465 GLY A 746 REMARK 465 ARG A 747 REMARK 465 ALA A 748 REMARK 465 VAL A 749 REMARK 465 GLY A 750 REMARK 465 LYS A 751 REMARK 465 VAL A 752 REMARK 465 ARG A 796 REMARK 465 TYR A 797 REMARK 465 VAL A 798 REMARK 465 MET A 799 REMARK 465 ARG A 800 REMARK 465 LEU A 801 REMARK 465 GLN A 802 REMARK 465 SER A 803 REMARK 465 ASN A 804 REMARK 465 PRO A 805 REMARK 465 MET A 806 REMARK 465 LYS A 807 REMARK 465 ALA A 808 REMARK 465 LEU A 809 REMARK 465 TYR A 810 REMARK 465 PRO A 811 REMARK 465 LEU A 812 REMARK 465 THR A 813 REMARK 465 THR A 814 REMARK 465 LYS A 815 REMARK 465 GLU A 816 REMARK 465 LEU A 817 REMARK 465 LYS A 818 REMARK 465 ASN A 819 REMARK 465 PRO A 820 REMARK 465 THR A 821 REMARK 465 ASN A 822 REMARK 465 PRO A 823 REMARK 465 ASP A 824 REMARK 465 ALA A 825 REMARK 465 SER A 826 REMARK 465 GLY A 827 REMARK 465 GLU A 828 REMARK 465 GLY A 829 REMARK 465 GLU A 830 REMARK 465 GLU A 831 REMARK 465 GLY A 832 REMARK 465 GLY A 833 REMARK 465 ASP A 834 REMARK 465 PHE A 835 REMARK 465 ASP A 836 REMARK 465 GLU A 837 REMARK 465 ALA A 838 REMARK 465 LYS A 839 REMARK 465 LEU A 840 REMARK 465 ALA A 841 REMARK 465 GLU A 842 REMARK 465 ALA A 843 REMARK 465 ARG A 844 REMARK 465 GLU A 845 REMARK 465 MET A 846 REMARK 465 ILE A 847 REMARK 465 ARG A 848 REMARK 465 TYR A 849 REMARK 465 MET A 850 REMARK 465 ALA A 851 REMARK 465 LEU A 852 REMARK 465 VAL A 853 REMARK 465 SER A 854 REMARK 465 ALA A 855 REMARK 465 MET A 856 REMARK 465 GLU A 857 REMARK 465 ARG A 858 REMARK 465 THR A 859 REMARK 465 GLU A 860 REMARK 465 HIS A 861 REMARK 465 LYS A 862 REMARK 465 ALA A 863 REMARK 465 LYS A 864 REMARK 465 LYS A 865 REMARK 465 LYS A 866 REMARK 465 GLY A 867 REMARK 465 THR A 868 REMARK 465 SER A 869 REMARK 465 ALA A 870 REMARK 465 LEU A 871 REMARK 465 LEU A 872 REMARK 465 SER A 873 REMARK 465 ALA A 874 REMARK 465 LYS A 875 REMARK 465 VAL A 876 REMARK 465 THR A 877 REMARK 465 ASP A 878 REMARK 465 MET A 879 REMARK 465 VAL A 880 REMARK 465 MET A 881 REMARK 465 ARG A 882 REMARK 465 LYS A 883 REMARK 465 ARG A 884 REMARK 465 ARG A 885 REMARK 465 ASN A 886 REMARK 465 THR A 887 REMARK 465 ASN A 888 REMARK 465 TYR A 889 REMARK 465 THR A 890 REMARK 465 GLN A 891 REMARK 465 VAL A 892 REMARK 465 PRO A 893 REMARK 465 ASN A 894 REMARK 465 LYS A 895 REMARK 465 ASP A 896 REMARK 465 GLY A 897 REMARK 465 ASP A 898 REMARK 465 ALA A 899 REMARK 465 ASP A 900 REMARK 465 GLU A 901 REMARK 465 ASP A 902 REMARK 465 ASP A 903 REMARK 465 LEU A 904 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 766 OG SER A 769 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 279 O ASP A 696 3655 2.11 REMARK 500 NH2 ARG A 318 OD1 ASP A 720 2545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 404 CB - CG - CD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 470 CG - CD - NE ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 474 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 122 -70.36 -58.64 REMARK 500 PRO A 130 96.13 -59.55 REMARK 500 ASP A 199 -62.49 -95.00 REMARK 500 ASN A 202 -70.24 -66.21 REMARK 500 VAL A 206 -167.08 -122.07 REMARK 500 GLU A 229 130.73 -37.30 REMARK 500 LEU A 252 127.15 -178.43 REMARK 500 THR A 331 -64.11 -94.40 REMARK 500 PRO A 358 -179.93 -69.59 REMARK 500 LYS A 359 -72.67 -96.36 REMARK 500 PRO A 361 33.21 -82.18 REMARK 500 SER A 362 -33.47 -142.39 REMARK 500 CYS A 364 129.85 -172.33 REMARK 500 GLU A 374 70.13 -119.69 REMARK 500 LEU A 455 146.15 -171.28 REMARK 500 PRO A 477 36.87 -97.88 REMARK 500 LEU A 564 65.35 -107.06 REMARK 500 SER A 656 -81.26 -89.19 REMARK 500 ASP A 713 -71.15 -124.83 REMARK 500 PHE A 716 34.42 -141.99 REMARK 500 ASP A 720 47.40 -97.47 REMARK 500 PRO A 774 -81.43 -2.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V2S RELATED DB: PDB DBREF 6BM8 A 72 904 UNP A1Z0P7 A1Z0P7_HHV1 72 904 SEQRES 1 A 833 ASN LYS LYS PRO LYS ASN PRO THR PRO PRO ARG PRO ALA SEQRES 2 A 833 GLY ASP ASN ALA THR VAL ALA ALA GLY HIS ALA THR LEU SEQRES 3 A 833 ARG GLU HIS LEU ARG ASP ILE LYS ALA GLU ASN THR ASP SEQRES 4 A 833 ALA ASN PHE TYR VAL CYS PRO PRO PRO THR GLY ALA THR SEQRES 5 A 833 VAL VAL GLN PHE GLU GLN PRO ARG ARG CYS PRO THR ARG SEQRES 6 A 833 PRO GLU GLY GLN ASN TYR THR GLU GLY ILE ALA VAL VAL SEQRES 7 A 833 PHE LYS GLU ASN ILE ALA PRO TYR LYS PHE LYS ALA THR SEQRES 8 A 833 MET TYR TYR LYS ASP VAL THR VAL SER GLN VAL TRP PHE SEQRES 9 A 833 GLY HIS ARG TYR SER GLN PHE MET GLY ILE PHE GLU ASP SEQRES 10 A 833 ARG ALA PRO VAL PRO PHE GLU GLU VAL ILE ASP LYS ILE SEQRES 11 A 833 ASN ALA LYS GLY VAL CYS ARG SER THR ALA LYS TYR VAL SEQRES 12 A 833 ARG ASN ASN LEU GLU THR THR ALA PHE HIS ARG ASP ASP SEQRES 13 A 833 HIS GLU THR ASP MET GLU LEU LYS PRO ALA ASN ALA ALA SEQRES 14 A 833 THR ARG THR SER ARG GLY TRP HIS THR THR ASP LEU LYS SEQRES 15 A 833 TYR ASN PRO SER ARG VAL GLU ALA PHE HIS ARG TYR GLY SEQRES 16 A 833 THR THR VAL ASN CYS ILE VAL GLU GLU VAL ASP ALA ARG SEQRES 17 A 833 SER VAL TYR PRO TYR ASP GLU PHE VAL LEU ALA THR GLY SEQRES 18 A 833 ASP PHE VAL TYR MET SER PRO PHE TYR GLY TYR ARG GLU SEQRES 19 A 833 GLY SER HIS THR GLU HIS THR SER TYR ALA ALA ASP ARG SEQRES 20 A 833 PHE LYS GLN VAL ASP GLY PHE TYR ALA ARG ASP LEU THR SEQRES 21 A 833 THR LYS ALA ARG ALA THR ALA PRO THR THR ARG ASN LEU SEQRES 22 A 833 LEU THR THR PRO LYS PHE THR VAL ALA TRP ASP TRP VAL SEQRES 23 A 833 PRO LYS ARG PRO SER VAL CYS THR MET THR LYS TRP GLN SEQRES 24 A 833 GLU VAL ASP GLU MET LEU ARG SER GLU TYR GLY GLY SER SEQRES 25 A 833 PHE ARG PHE SER SER ASP ALA ILE SER THR THR PHE THR SEQRES 26 A 833 THR ASN LEU THR GLU TYR PRO LEU SER ARG VAL ASP LEU SEQRES 27 A 833 GLY ASP CYS ILE GLY LYS ASP ALA ARG ASP ALA MET ASP SEQRES 28 A 833 ARG ILE PHE ALA ARG ARG TYR ASN ALA THR HIS ILE LYS SEQRES 29 A 833 VAL GLY GLN PRO GLN TYR TYR LEU ALA ASN GLY GLY PHE SEQRES 30 A 833 LEU ILE ALA TYR GLN PRO LEU LEU SER ASN THR LEU ALA SEQRES 31 A 833 GLU LEU TYR VAL ARG GLU HIS LEU ARG GLU GLN SER ARG SEQRES 32 A 833 LYS PRO PRO ASN PRO THR PRO PRO PRO PRO GLY ALA SER SEQRES 33 A 833 ALA ASN ALA SER VAL GLU ARG ILE LYS THR THR SER SER SEQRES 34 A 833 ILE GLU PHE ALA ARG LEU GLN PHE THR TYR ASN HIS ILE SEQRES 35 A 833 GLN ARG HIS VAL ASN ASP MET LEU GLY ARG VAL ALA ILE SEQRES 36 A 833 ALA TRP CYS GLU LEU GLN ASN HIS GLU LEU THR LEU TRP SEQRES 37 A 833 ASN GLU ALA ARG LYS LEU ASN PRO ASN ALA ILE ALA SER SEQRES 38 A 833 VAL THR VAL GLY ARG ARG VAL SER ALA ARG MET LEU GLY SEQRES 39 A 833 ASP VAL MET ALA VAL SER THR CYS VAL PRO VAL ALA ALA SEQRES 40 A 833 ASP ASN VAL ILE VAL GLN ASN SER MET ARG ILE SER SER SEQRES 41 A 833 ARG PRO GLY ALA CYS TYR SER ARG PRO LEU VAL SER PHE SEQRES 42 A 833 ARG TYR GLU ASP GLN GLY PRO LEU VAL GLU GLY GLN LEU SEQRES 43 A 833 GLY GLU ASN ASN GLU LEU ARG LEU THR ARG ASP ALA ILE SEQRES 44 A 833 GLU PRO CYS THR VAL GLY HIS ARG ARG TYR PHE THR PHE SEQRES 45 A 833 GLY GLY GLY TYR VAL TYR PHE GLU GLU TYR ALA TYR SER SEQRES 46 A 833 HIS GLN LEU SER ARG ALA ASP ILE THR THR VAL SER THR SEQRES 47 A 833 PHE ILE ASP LEU ASN ILE THR MET LEU GLU ASP HIS GLU SEQRES 48 A 833 PHE VAL PRO LEU GLU VAL TYR THR ARG HIS GLU ILE LYS SEQRES 49 A 833 ASP SER GLY LEU LEU ASP TYR THR GLU VAL GLN ARG ARG SEQRES 50 A 833 ASN GLN LEU HIS ASP LEU ARG PHE ALA ASP ILE ASP THR SEQRES 51 A 833 VAL ILE HIS ALA ASP ALA ASN ALA ALA MET PHE ALA GLY SEQRES 52 A 833 LEU GLY ALA PHE PHE GLU GLY MET GLY ASP LEU GLY ARG SEQRES 53 A 833 ALA VAL GLY LYS VAL VAL MET GLY ILE VAL GLY GLY VAL SEQRES 54 A 833 VAL SER ALA VAL SER GLY VAL SER SER PHE MET SER ASN SEQRES 55 A 833 PRO PHE GLY ALA LEU ALA VAL GLY LEU LEU VAL LEU ALA SEQRES 56 A 833 GLY LEU ALA ALA ALA PHE PHE ALA PHE ARG TYR VAL MET SEQRES 57 A 833 ARG LEU GLN SER ASN PRO MET LYS ALA LEU TYR PRO LEU SEQRES 58 A 833 THR THR LYS GLU LEU LYS ASN PRO THR ASN PRO ASP ALA SEQRES 59 A 833 SER GLY GLU GLY GLU GLU GLY GLY ASP PHE ASP GLU ALA SEQRES 60 A 833 LYS LEU ALA GLU ALA ARG GLU MET ILE ARG TYR MET ALA SEQRES 61 A 833 LEU VAL SER ALA MET GLU ARG THR GLU HIS LYS ALA LYS SEQRES 62 A 833 LYS LYS GLY THR SER ALA LEU LEU SER ALA LYS VAL THR SEQRES 63 A 833 ASP MET VAL MET ARG LYS ARG ARG ASN THR ASN TYR THR SEQRES 64 A 833 GLN VAL PRO ASN LYS ASP GLY ASP ALA ASP GLU ASP ASP SEQRES 65 A 833 LEU HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG A1001 14 HET NAG A1005 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 HELIX 1 AA1 PRO A 193 ASP A 199 1 7 HELIX 2 AA2 ARG A 225 ASP A 227 5 3 HELIX 3 AA3 GLY A 306 GLU A 310 5 5 HELIX 4 AA4 PRO A 403 VAL A 407 5 5 HELIX 5 AA5 GLY A 410 TYR A 429 1 20 HELIX 6 AA6 THR A 459 GLU A 462 5 4 HELIX 7 AA7 LEU A 463 SER A 473 1 11 HELIX 8 AA8 ILE A 501 ASN A 546 1 46 HELIX 9 AA9 ASN A 546 GLY A 556 1 11 HELIX 10 AB1 ALA A 577 VAL A 581 5 5 HELIX 11 AB2 GLU A 619 ASN A 621 5 3 HELIX 12 AB3 THR A 690 ASP A 696 1 7 HELIX 13 AB4 ASP A 701 GLN A 710 1 10 HELIX 14 AB5 MET A 754 SER A 772 1 19 HELIX 15 AB6 ASN A 773 PHE A 795 1 23 SHEET 1 AA1 2 PHE A 113 VAL A 115 0 SHEET 2 AA1 2 VAL A 574 VAL A 576 -1 O VAL A 574 N VAL A 115 SHEET 1 AA2 3 THR A 123 VAL A 125 0 SHEET 2 AA2 3 MET A 568 THR A 572 -1 O MET A 568 N VAL A 125 SHEET 3 AA2 3 VAL A 559 MET A 563 -1 N SER A 560 O SER A 571 SHEET 1 AA3 6 THR A 396 THR A 397 0 SHEET 2 AA3 6 SER A 383 SER A 388 -1 N PHE A 384 O THR A 397 SHEET 3 AA3 6 MET A 366 TYR A 380 -1 N LEU A 376 O SER A 387 SHEET 4 AA3 6 THR A 143 GLU A 152 -1 N THR A 143 O ARG A 377 SHEET 5 AA3 6 PHE A 448 SER A 457 -1 O LEU A 449 N PHE A 150 SHEET 6 AA3 6 HIS A 433 LYS A 435 -1 N ILE A 434 O LEU A 456 SHEET 1 AA4 6 THR A 396 THR A 397 0 SHEET 2 AA4 6 SER A 383 SER A 388 -1 N PHE A 384 O THR A 397 SHEET 3 AA4 6 MET A 366 TYR A 380 -1 N LEU A 376 O SER A 387 SHEET 4 AA4 6 THR A 143 GLU A 152 -1 N THR A 143 O ARG A 377 SHEET 5 AA4 6 PHE A 448 SER A 457 -1 O LEU A 449 N PHE A 150 SHEET 6 AA4 6 GLN A 440 ALA A 444 -1 N GLN A 440 O TYR A 452 SHEET 1 AA5 5 TYR A 179 PRO A 191 0 SHEET 2 AA5 5 TYR A 157 GLY A 176 -1 N GLY A 176 O TYR A 179 SHEET 3 AA5 5 ARG A 264 SER A 280 -1 O ILE A 272 N TYR A 165 SHEET 4 AA5 5 PHE A 287 LEU A 289 -1 O VAL A 288 N ARG A 279 SHEET 5 AA5 5 PHE A 294 VAL A 295 -1 O VAL A 295 N PHE A 287 SHEET 1 AA6 7 LYS A 235 PRO A 236 0 SHEET 2 AA6 7 GLY A 246 HIS A 248 -1 O HIS A 248 N LYS A 235 SHEET 3 AA6 7 ARG A 264 SER A 280 -1 O VAL A 273 N TRP A 247 SHEET 4 AA6 7 TYR A 157 GLY A 176 -1 N TYR A 165 O ILE A 272 SHEET 5 AA6 7 THR A 351 ASP A 355 -1 O THR A 351 N TYR A 164 SHEET 6 AA6 7 THR A 340 THR A 346 -1 N LEU A 345 O VAL A 352 SHEET 7 AA6 7 LYS A 320 PHE A 325 -1 N VAL A 322 O ARG A 342 SHEET 1 AA7 2 VAL A 206 ARG A 208 0 SHEET 2 AA7 2 ASP A 231 GLU A 233 -1 O MET A 232 N CYS A 207 SHEET 1 AA8 2 THR A 210 ARG A 215 0 SHEET 2 AA8 2 LEU A 218 PHE A 223 -1 O LEU A 218 N ARG A 215 SHEET 1 AA9 4 VAL A 583 GLN A 584 0 SHEET 2 AA9 4 LEU A 601 PHE A 604 -1 O LEU A 601 N GLN A 584 SHEET 3 AA9 4 VAL A 613 LEU A 617 -1 O VAL A 613 N PHE A 604 SHEET 4 AA9 4 LEU A 623 ARG A 624 -1 O ARG A 624 N GLN A 616 SHEET 1 AB1 2 ALA A 595 TYR A 597 0 SHEET 2 AB1 2 ILE A 630 PRO A 632 -1 O GLU A 631 N CYS A 596 SHEET 1 AB2 3 ARG A 638 PHE A 643 0 SHEET 2 AB2 3 GLY A 646 GLU A 651 -1 O GLY A 646 N PHE A 643 SHEET 3 AB2 3 TYR A 655 LEU A 659 -1 O HIS A 657 N TYR A 649 SSBOND 1 CYS A 116 CYS A 573 1555 1555 2.04 SSBOND 2 CYS A 133 CYS A 529 1555 1555 2.03 SSBOND 3 CYS A 207 CYS A 271 1555 1555 2.03 SSBOND 4 CYS A 364 CYS A 412 1555 1555 2.03 SSBOND 5 CYS A 596 CYS A 633 1555 1555 2.04 LINK ND2 ASN A 141 C1 NAG A1001 1555 1555 1.44 LINK ND2 ASN A 398 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 430 C1 NAG A1005 1555 1555 1.45 LINK ND2 ASN A 674 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CISPEP 1 TYR A 282 PRO A 283 0 -0.56 CRYST1 118.597 118.597 800.576 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008432 0.004868 0.000000 0.00000 SCALE2 0.000000 0.009736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001249 0.00000