HEADER VIRUS LIKE PARTICLE 12-DEC-17 6BVF TITLE CRYO-EM STRUCTURE OF HEPATITIS B VIRUS T=4 CAPSID IN COMPLEX WITH THE TITLE 2 FLUORESCENT ALLOSTERIC MODULATOR HAP-TAMRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CORE ANTIGEN, CORE PROTEIN, HBCAG, P21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS B VIRUS GENOTYPE D SUBTYPE ADW; SOURCE 3 ORGANISM_COMMON: ISOLATE UNITED KINGDOM/ADYW/1979; SOURCE 4 ORGANISM_TAXID: 10419; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAPSID, CPAM, ANTIVIRAL, FLUORESCENT, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR C.SCHLICKSUP,J.C.WANG,A.ZLOTNICK REVDAT 4 13-APR-22 6BVF 1 COMPND REMARK FORMUL REVDAT 3 27-NOV-19 6BVF 1 REMARK REVDAT 2 14-FEB-18 6BVF 1 REMARK REVDAT 1 07-FEB-18 6BVF 0 JRNL AUTH C.J.SCHLICKSUP,J.C.WANG,S.FRANCIS,B.VENKATAKRISHNAN, JRNL AUTH 2 W.W.TURNER,M.VANNIEUWENHZE,A.ZLOTNICK JRNL TITL HEPATITIS B VIRUS CORE PROTEIN ALLOSTERIC MODULATORS CAN JRNL TITL 2 DISTORT AND DISRUPT INTACT CAPSIDS. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29377794 JRNL DOI 10.7554/ELIFE.31473 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, COOT, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5D7Y REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.000 REMARK 3 NUMBER OF PARTICLES : 16008 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6BVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231622. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HEPATITIS B VIRUS T=4 CAPSID REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 10.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 679 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3300.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809086 0.308988 -0.499906 92.58743 REMARK 350 BIOMT2 2 0.308977 0.499931 0.809075 -149.84979 REMARK 350 BIOMT3 2 0.499913 -0.809071 0.309017 243.27879 REMARK 350 BIOMT1 3 0.500180 0.808930 -0.308952 -0.41981 REMARK 350 BIOMT2 3 0.808923 -0.309197 0.500040 0.67377 REMARK 350 BIOMT3 3 0.308971 -0.500029 -0.809017 485.98082 REMARK 350 BIOMT1 4 0.500180 0.808923 0.308971 -150.48888 REMARK 350 BIOMT2 4 0.808930 -0.309197 -0.500029 243.55224 REMARK 350 BIOMT3 4 -0.308952 0.500040 -0.809017 392.70012 REMARK 350 BIOMT1 5 0.809086 0.308977 0.499913 -150.22942 REMARK 350 BIOMT2 5 0.308988 0.499931 -0.809071 243.13583 REMARK 350 BIOMT3 5 -0.499906 0.809075 0.309017 92.34746 REMARK 350 BIOMT1 6 0.309139 0.499878 -0.809046 243.12883 REMARK 350 BIOMT2 6 0.499878 -0.809128 -0.308924 394.64695 REMARK 350 BIOMT3 6 -0.809046 -0.308924 -0.500011 637.25070 REMARK 350 BIOMT1 7 0.000118 1.000000 -0.000110 0.02091 REMARK 350 BIOMT2 7 0.000008 -0.000110 -1.000000 487.02238 REMARK 350 BIOMT3 7 -1.000000 0.000118 -0.000008 486.99331 REMARK 350 BIOMT1 8 0.309017 0.500057 0.808982 -149.84479 REMARK 350 BIOMT2 8 -0.499941 0.809018 -0.309110 243.76083 REMARK 350 BIOMT3 8 -0.809053 -0.308923 0.499999 394.38635 REMARK 350 BIOMT1 9 0.808948 -0.309047 0.500093 0.64104 REMARK 350 BIOMT2 9 -0.309056 0.500069 0.808959 1.04149 REMARK 350 BIOMT3 9 -0.500087 -0.808963 0.309017 487.40948 REMARK 350 BIOMT1 10 0.809023 -0.309157 -0.499903 243.51209 REMARK 350 BIOMT2 10 0.308866 -0.500000 0.809075 94.29424 REMARK 350 BIOMT3 10 -0.500083 -0.808963 -0.309023 637.50791 REMARK 350 BIOMT1 11 -0.808955 0.309046 0.500083 244.76800 REMARK 350 BIOMT2 11 0.309046 -0.500071 0.808962 94.29504 REMARK 350 BIOMT3 11 0.500083 0.808962 0.309025 -151.78126 REMARK 350 BIOMT1 12 -0.309027 -0.500059 0.808977 245.21822 REMARK 350 BIOMT2 12 0.499945 -0.809017 -0.309105 394.64766 REMARK 350 BIOMT3 12 0.809047 0.308922 0.500010 -151.52334 REMARK 350 BIOMT1 13 -0.000118 -1.000000 -0.000113 488.34673 REMARK 350 BIOMT2 13 0.000005 0.000113 -1.000000 486.96852 REMARK 350 BIOMT3 13 1.000000 -0.000118 0.000005 -1.26574 REMARK 350 BIOMT1 14 -0.309128 -0.499876 -0.809051 638.15819 REMARK 350 BIOMT2 14 -0.499874 0.809128 -0.308928 243.67334 REMARK 350 BIOMT3 14 0.809052 0.308925 -0.500000 91.34065 REMARK 350 BIOMT1 15 -0.809017 0.309158 -0.499913 487.61826 REMARK 350 BIOMT2 15 -0.308877 0.499998 0.809072 0.98778 REMARK 350 BIOMT3 15 0.500087 0.808964 -0.309015 -1.68306 REMARK 350 BIOMT1 16 -0.500184 -0.808924 0.308962 488.73016 REMARK 350 BIOMT2 16 -0.808924 0.309199 -0.500038 487.59330 REMARK 350 BIOMT3 16 0.308962 -0.500038 -0.809014 485.98456 REMARK 350 BIOMT1 17 -0.500176 -0.808930 -0.308960 638.80043 REMARK 350 BIOMT2 17 -0.808930 0.309196 0.500031 244.71505 REMARK 350 BIOMT3 17 -0.308960 0.500031 -0.809020 392.70524 REMARK 350 BIOMT1 18 -0.809079 -0.308987 -0.499917 638.54486 REMARK 350 BIOMT2 18 -0.308987 -0.499933 0.809070 245.13218 REMARK 350 BIOMT3 18 -0.499917 0.809070 0.309012 92.35258 REMARK 350 BIOMT1 19 -1.000000 0.000000 -0.000013 488.31664 REMARK 350 BIOMT2 19 0.000000 -1.000000 -0.000002 488.26823 REMARK 350 BIOMT3 19 -0.000013 -0.000002 1.000000 0.00374 REMARK 350 BIOMT1 20 -0.809092 -0.308978 0.499902 395.72607 REMARK 350 BIOMT2 20 -0.308978 -0.499929 -0.809076 638.11744 REMARK 350 BIOMT3 20 0.499902 -0.809076 0.309022 243.28169 REMARK 350 BIOMT1 21 0.809010 0.308876 0.500098 -150.23113 REMARK 350 BIOMT2 21 -0.309169 -0.500000 0.808959 245.21975 REMARK 350 BIOMT3 21 0.499917 -0.809071 -0.309011 393.37443 REMARK 350 BIOMT1 22 1.000000 -0.000223 0.000013 0.05129 REMARK 350 BIOMT2 22 -0.000223 -1.000000 0.000000 488.32208 REMARK 350 BIOMT3 22 0.000013 0.000000 -1.000000 485.72384 REMARK 350 BIOMT1 23 0.809023 0.308866 -0.500083 92.67527 REMARK 350 BIOMT2 23 -0.309157 -0.500000 -0.808963 638.15122 REMARK 350 BIOMT3 23 -0.499903 0.809075 -0.309023 242.44625 REMARK 350 BIOMT1 24 0.500004 0.808993 -0.309074 -0.36238 REMARK 350 BIOMT2 24 -0.809035 0.309017 -0.499971 487.64840 REMARK 350 BIOMT3 24 -0.308964 0.500039 0.809013 -0.25698 REMARK 350 BIOMT1 25 0.499996 0.808999 0.309072 -150.48680 REMARK 350 BIOMT2 25 -0.809042 0.309017 0.499960 244.80340 REMARK 350 BIOMT3 25 0.308958 -0.500030 0.809021 93.02176 REMARK 350 BIOMT1 26 -0.000105 -0.000005 -1.000000 487.04717 REMARK 350 BIOMT2 26 -1.000000 0.000110 0.000105 488.23815 REMARK 350 BIOMT3 26 0.000110 1.000000 -0.000005 -1.29597 REMARK 350 BIOMT1 27 -0.500000 0.809035 -0.308969 243.75945 REMARK 350 BIOMT2 27 -0.808999 -0.309018 0.500028 395.65974 REMARK 350 BIOMT3 27 0.309063 0.499969 0.809018 -151.13683 REMARK 350 BIOMT1 28 -0.309027 0.499945 0.809047 1.06640 REMARK 350 BIOMT2 28 -0.500059 -0.809017 0.308922 488.70906 REMARK 350 BIOMT3 28 0.808977 -0.309105 0.500010 -0.62481 REMARK 350 BIOMT1 29 0.308895 -0.500124 0.808987 94.36157 REMARK 350 BIOMT2 29 -0.500124 -0.808905 -0.309111 638.79511 REMARK 350 BIOMT3 29 0.808987 -0.309111 -0.499990 242.23760 REMARK 350 BIOMT1 30 0.499820 -0.809110 -0.309065 394.71420 REMARK 350 BIOMT2 30 -0.809104 -0.308837 -0.499970 638.50407 REMARK 350 BIOMT3 30 0.309080 0.499961 -0.809017 241.82280 REMARK 350 BIOMT1 31 -0.308906 0.500122 0.808984 1.00872 REMARK 350 BIOMT2 31 0.500128 0.808906 -0.309102 -0.38721 REMARK 350 BIOMT3 31 -0.808981 0.309112 -0.500000 486.34866 REMARK 350 BIOMT1 32 0.309017 -0.499947 0.809050 94.27357 REMARK 350 BIOMT2 32 0.500055 0.809016 0.308930 -150.49406 REMARK 350 BIOMT3 32 -0.808983 0.309104 0.500001 243.48746 REMARK 350 BIOMT1 33 0.500004 -0.809035 -0.308964 394.62626 REMARK 350 BIOMT2 33 0.808993 0.309017 0.500039 -150.26998 REMARK 350 BIOMT3 33 -0.309074 -0.499971 0.809013 243.90615 REMARK 350 BIOMT1 34 0.000118 0.000008 -1.000000 486.98958 REMARK 350 BIOMT2 34 1.000000 -0.000110 0.000118 -0.02465 REMARK 350 BIOMT3 34 -0.000110 -1.000000 -0.000008 487.02611 REMARK 350 BIOMT1 35 -0.499816 0.809111 -0.309070 243.72057 REMARK 350 BIOMT2 35 0.809111 0.308838 -0.499959 92.60800 REMARK 350 BIOMT3 35 -0.309070 -0.499959 -0.809022 636.86383 REMARK 350 BIOMT1 36 -0.500000 -0.808992 -0.309082 638.80223 REMARK 350 BIOMT2 36 0.809041 -0.309016 -0.499962 243.46461 REMARK 350 BIOMT3 36 0.308954 -0.500041 0.809016 93.02687 REMARK 350 BIOMT1 37 -0.809017 -0.308865 -0.500094 638.54268 REMARK 350 BIOMT2 37 0.309168 0.500002 -0.808958 243.04754 REMARK 350 BIOMT3 37 0.499907 -0.809074 -0.309019 393.37954 REMARK 350 BIOMT1 38 -1.000000 0.000223 0.000000 488.25906 REMARK 350 BIOMT2 38 0.000223 1.000000 0.000002 -0.05501 REMARK 350 BIOMT3 38 0.000000 0.000002 -1.000000 485.72642 REMARK 350 BIOMT1 39 -0.809017 -0.308877 0.500087 395.63823 REMARK 350 BIOMT2 39 0.309158 0.499998 0.808964 -149.88358 REMARK 350 BIOMT3 39 -0.499913 0.809072 -0.309015 242.44727 REMARK 350 BIOMT1 40 -0.500000 -0.808999 0.309063 488.67903 REMARK 350 BIOMT2 40 0.809035 -0.309018 0.499969 0.61982 REMARK 350 BIOMT3 40 -0.308969 0.500028 0.809018 -0.25439 REMARK 350 BIOMT1 41 0.809010 -0.309169 0.499917 0.69841 REMARK 350 BIOMT2 41 0.308876 -0.500000 -0.809071 487.28045 REMARK 350 BIOMT3 41 0.500098 0.808959 -0.309011 -1.68564 REMARK 350 BIOMT1 42 0.808948 -0.309056 -0.500087 243.55061 REMARK 350 BIOMT2 42 -0.309047 0.500069 -0.808963 393.97354 REMARK 350 BIOMT3 42 0.500093 0.808959 0.309017 -151.78092 REMARK 350 BIOMT1 43 0.309017 0.500055 -0.808983 243.10039 REMARK 350 BIOMT2 43 -0.499947 0.809016 0.309104 93.62093 REMARK 350 BIOMT3 43 0.809050 0.308930 0.500001 -151.52371 REMARK 350 BIOMT1 44 0.000105 1.000000 0.000113 -0.03007 REMARK 350 BIOMT2 44 -0.000008 -0.000113 1.000000 1.29970 REMARK 350 BIOMT3 44 1.000000 -0.000105 0.000008 -1.26948 REMARK 350 BIOMT1 45 0.309118 0.499872 0.809057 -149.84273 REMARK 350 BIOMT2 45 0.499872 -0.809129 0.308930 244.59467 REMARK 350 BIOMT3 45 0.809057 0.308930 -0.499989 91.33555 REMARK 350 BIOMT1 46 -0.308905 0.500128 -0.808981 393.95194 REMARK 350 BIOMT2 46 0.500122 0.808906 0.309112 -150.52747 REMARK 350 BIOMT3 46 0.808984 -0.309102 -0.500000 242.23860 REMARK 350 BIOMT1 47 -0.499824 0.809104 0.309076 93.59931 REMARK 350 BIOMT2 47 0.809104 0.308835 0.499972 -150.23642 REMARK 350 BIOMT3 47 0.309076 0.499972 -0.809012 241.81992 REMARK 350 BIOMT1 48 0.000105 -0.000008 1.000000 1.26949 REMARK 350 BIOMT2 48 1.000000 -0.000113 -0.000105 0.03008 REMARK 350 BIOMT3 48 0.000113 1.000000 0.000008 -1.29969 REMARK 350 BIOMT1 49 0.499996 -0.809042 0.308958 244.55915 REMARK 350 BIOMT2 49 0.808999 0.309017 -0.500030 92.60885 REMARK 350 BIOMT3 49 0.309072 0.499960 0.809021 -151.13719 REMARK 350 BIOMT1 50 0.309017 -0.499941 -0.809053 487.25025 REMARK 350 BIOMT2 50 0.500057 0.809018 -0.308923 -0.44083 REMARK 350 BIOMT3 50 0.808982 -0.309110 0.499999 -0.62224 REMARK 350 BIOMT1 51 -0.500000 0.809041 0.308954 93.68723 REMARK 350 BIOMT2 51 -0.808992 -0.309016 -0.500041 638.53763 REMARK 350 BIOMT3 51 -0.309082 -0.499962 0.809016 243.90513 REMARK 350 BIOMT1 52 -0.000118 0.000005 1.000000 1.32075 REMARK 350 BIOMT2 52 -1.000000 0.000113 -0.000118 488.29171 REMARK 350 BIOMT3 52 -0.000113 -1.000000 0.000005 487.02354 REMARK 350 BIOMT1 53 0.499820 -0.809104 0.309080 244.58783 REMARK 350 BIOMT2 53 -0.809110 -0.308837 0.499961 395.65871 REMARK 350 BIOMT3 53 -0.309065 -0.499970 -0.809017 636.86419 REMARK 350 BIOMT1 54 0.308916 -0.500126 -0.808978 487.30162 REMARK 350 BIOMT2 54 -0.500126 -0.808906 0.309104 488.65428 REMARK 350 BIOMT3 54 -0.808978 0.309104 -0.500010 486.35239 REMARK 350 BIOMT1 55 -0.309007 0.499943 -0.809056 394.03992 REMARK 350 BIOMT2 55 -0.500053 -0.809017 -0.308932 638.76171 REMARK 350 BIOMT3 55 -0.808988 0.309109 0.499990 243.49034 REMARK 350 BIOMT1 56 -0.000105 -1.000000 0.000110 488.28942 REMARK 350 BIOMT2 56 -0.000005 0.000110 1.000000 1.24469 REMARK 350 BIOMT3 56 -1.000000 0.000105 -0.000005 486.99590 REMARK 350 BIOMT1 57 -0.309007 -0.500053 -0.808988 638.15632 REMARK 350 BIOMT2 57 0.499943 -0.809017 0.309109 244.50646 REMARK 350 BIOMT3 57 -0.809056 -0.308932 0.499990 394.39145 REMARK 350 BIOMT1 58 -0.808942 0.309057 -0.500097 487.66929 REMARK 350 BIOMT2 58 0.309057 -0.500067 -0.808960 487.22558 REMARK 350 BIOMT3 58 -0.500097 -0.808960 0.309009 487.41321 REMARK 350 BIOMT1 59 -0.809017 0.309168 0.499907 244.79630 REMARK 350 BIOMT2 59 -0.308865 0.500002 -0.809074 393.97247 REMARK 350 BIOMT3 59 -0.500094 -0.808958 -0.309019 637.50827 REMARK 350 BIOMT1 60 -0.309128 -0.499874 0.809052 245.17956 REMARK 350 BIOMT2 60 -0.499876 0.809128 0.308925 93.61976 REMARK 350 BIOMT3 60 -0.809051 -0.308928 -0.500000 637.25036 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 143 REMARK 465 PRO A 144 REMARK 465 GLU A 145 REMARK 465 THR A 146 REMARK 465 THR A 147 REMARK 465 VAL A 148 REMARK 465 VAL A 149 REMARK 465 CYS A 150 REMARK 465 LEU B 143 REMARK 465 PRO B 144 REMARK 465 GLU B 145 REMARK 465 THR B 146 REMARK 465 THR B 147 REMARK 465 VAL B 148 REMARK 465 VAL B 149 REMARK 465 CYS B 150 REMARK 465 LEU C 143 REMARK 465 PRO C 144 REMARK 465 GLU C 145 REMARK 465 THR C 146 REMARK 465 THR C 147 REMARK 465 VAL C 148 REMARK 465 VAL C 149 REMARK 465 CYS C 150 REMARK 465 LEU D 143 REMARK 465 PRO D 144 REMARK 465 GLU D 145 REMARK 465 THR D 146 REMARK 465 THR D 147 REMARK 465 VAL D 148 REMARK 465 VAL D 149 REMARK 465 CYS D 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 -173.68 -69.23 REMARK 500 THR B 91 -160.41 -78.64 REMARK 500 ALA C 48 -61.39 -90.51 REMARK 500 GLU C 77 -67.48 -93.52 REMARK 500 PRO C 79 44.26 -85.23 REMARK 500 SER C 81 -1.41 69.28 REMARK 500 TYR C 132 48.58 -94.19 REMARK 500 SER C 141 -61.24 -98.68 REMARK 500 PRO D 20 -179.39 -69.20 REMARK 500 PRO D 45 44.23 -82.62 REMARK 500 SER D 141 -168.67 -124.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E9D B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E9D C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-7294 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HEPATITIS B VIRUS T=4 CAPSID IN COMPLEX WITH REMARK 900 THE FLUORESCENT ALLOSTERIC MODULATOR HAP-TAMRA REMARK 900 RELATED ID: EMD-7295 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HEPATITIS B VIRUS T=3 CAPSID IN COMPLEX WITH REMARK 900 THE FLUORESCENT ALLOSTERIC MODULATOR HAP-TAMRA DBREF 6BVF A 1 149 UNP P03147 CAPSD_HBVD1 1 149 DBREF 6BVF B 1 149 UNP P03147 CAPSD_HBVD1 1 149 DBREF 6BVF C 1 149 UNP P03147 CAPSD_HBVD1 1 149 DBREF 6BVF D 1 149 UNP P03147 CAPSD_HBVD1 1 149 SEQADV 6BVF ALA A 48 UNP P03147 CYS 48 ENGINEERED MUTATION SEQADV 6BVF ALA A 61 UNP P03147 CYS 61 ENGINEERED MUTATION SEQADV 6BVF ALA A 107 UNP P03147 CYS 107 ENGINEERED MUTATION SEQADV 6BVF CYS A 150 UNP P03147 EXPRESSION TAG SEQADV 6BVF ALA B 48 UNP P03147 CYS 48 ENGINEERED MUTATION SEQADV 6BVF ALA B 61 UNP P03147 CYS 61 ENGINEERED MUTATION SEQADV 6BVF ALA B 107 UNP P03147 CYS 107 ENGINEERED MUTATION SEQADV 6BVF CYS B 150 UNP P03147 EXPRESSION TAG SEQADV 6BVF ALA C 48 UNP P03147 CYS 48 ENGINEERED MUTATION SEQADV 6BVF ALA C 61 UNP P03147 CYS 61 ENGINEERED MUTATION SEQADV 6BVF ALA C 107 UNP P03147 CYS 107 ENGINEERED MUTATION SEQADV 6BVF CYS C 150 UNP P03147 EXPRESSION TAG SEQADV 6BVF ALA D 48 UNP P03147 CYS 48 ENGINEERED MUTATION SEQADV 6BVF ALA D 61 UNP P03147 CYS 61 ENGINEERED MUTATION SEQADV 6BVF ALA D 107 UNP P03147 CYS 107 ENGINEERED MUTATION SEQADV 6BVF CYS D 150 UNP P03147 EXPRESSION TAG SEQRES 1 A 150 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 A 150 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 A 150 VAL ARG ASP LEU LEU ASP THR ALA ALA ALA LEU TYR ARG SEQRES 4 A 150 ASP ALA LEU GLU SER PRO GLU HIS ALA SER PRO HIS HIS SEQRES 5 A 150 THR ALA LEU ARG GLN ALA ILE LEU ALA TRP GLY ASP LEU SEQRES 6 A 150 MET THR LEU ALA THR TRP VAL GLY THR ASN LEU GLU ASP SEQRES 7 A 150 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 A 150 ASN VAL GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 A 150 ILE SER ALA LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 A 150 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 A 150 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 A 150 PRO GLU THR THR VAL VAL CYS SEQRES 1 B 150 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 B 150 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 B 150 VAL ARG ASP LEU LEU ASP THR ALA ALA ALA LEU TYR ARG SEQRES 4 B 150 ASP ALA LEU GLU SER PRO GLU HIS ALA SER PRO HIS HIS SEQRES 5 B 150 THR ALA LEU ARG GLN ALA ILE LEU ALA TRP GLY ASP LEU SEQRES 6 B 150 MET THR LEU ALA THR TRP VAL GLY THR ASN LEU GLU ASP SEQRES 7 B 150 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 B 150 ASN VAL GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 B 150 ILE SER ALA LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 B 150 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 B 150 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 B 150 PRO GLU THR THR VAL VAL CYS SEQRES 1 C 150 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 C 150 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 C 150 VAL ARG ASP LEU LEU ASP THR ALA ALA ALA LEU TYR ARG SEQRES 4 C 150 ASP ALA LEU GLU SER PRO GLU HIS ALA SER PRO HIS HIS SEQRES 5 C 150 THR ALA LEU ARG GLN ALA ILE LEU ALA TRP GLY ASP LEU SEQRES 6 C 150 MET THR LEU ALA THR TRP VAL GLY THR ASN LEU GLU ASP SEQRES 7 C 150 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 C 150 ASN VAL GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 C 150 ILE SER ALA LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 C 150 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 C 150 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 C 150 PRO GLU THR THR VAL VAL CYS SEQRES 1 D 150 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 D 150 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 D 150 VAL ARG ASP LEU LEU ASP THR ALA ALA ALA LEU TYR ARG SEQRES 4 D 150 ASP ALA LEU GLU SER PRO GLU HIS ALA SER PRO HIS HIS SEQRES 5 D 150 THR ALA LEU ARG GLN ALA ILE LEU ALA TRP GLY ASP LEU SEQRES 6 D 150 MET THR LEU ALA THR TRP VAL GLY THR ASN LEU GLU ASP SEQRES 7 D 150 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 D 150 ASN VAL GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 D 150 ILE SER ALA LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 D 150 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 D 150 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 D 150 PRO GLU THR THR VAL VAL CYS HET E9D B 201 85 HET E9D C 201 85 HETNAM E9D HETEROARYLDIHYDROPYRIMIDINE TETRAMETHYLRODAMINE HETSYN E9D HAP-TAMRA FORMUL 5 E9D 2(C51 H48 CL F N8 O7) HELIX 1 AA1 THR A 12 SER A 17 1 6 HELIX 2 AA2 PHE A 18 LEU A 19 5 2 HELIX 3 AA3 PRO A 20 PHE A 24 5 5 HELIX 4 AA4 SER A 26 TYR A 38 1 13 HELIX 5 AA5 SER A 49 LEU A 76 1 28 HELIX 6 AA6 ASP A 78 ASN A 92 1 15 HELIX 7 AA7 ASN A 92 GLY A 111 1 20 HELIX 8 AA8 GLY A 111 THR A 128 1 18 HELIX 9 AA9 ASP B 4 GLY B 10 5 7 HELIX 10 AB1 VAL B 13 PHE B 18 5 6 HELIX 11 AB2 PRO B 20 PHE B 24 5 5 HELIX 12 AB3 SER B 26 TYR B 38 1 13 HELIX 13 AB4 TYR B 38 SER B 44 1 7 HELIX 14 AB5 SER B 49 LEU B 76 1 28 HELIX 15 AB6 ASP B 78 THR B 91 1 14 HELIX 16 AB7 THR B 91 GLY B 111 1 21 HELIX 17 AB8 GLU B 113 THR B 128 1 16 HELIX 18 AB9 TYR C 6 GLY C 10 5 5 HELIX 19 AC1 THR C 12 SER C 17 1 6 HELIX 20 AC2 PHE C 18 LEU C 19 5 2 HELIX 21 AC3 PRO C 20 PHE C 24 5 5 HELIX 22 AC4 SER C 26 ALA C 35 1 10 HELIX 23 AC5 SER C 49 GLY C 73 1 25 HELIX 24 AC6 LEU C 84 ASN C 92 1 9 HELIX 25 AC7 VAL C 93 VAL C 124 1 32 HELIX 26 AC8 TYR D 6 GLY D 10 5 5 HELIX 27 AC9 THR D 12 LEU D 19 1 8 HELIX 28 AD1 SER D 26 TYR D 38 1 13 HELIX 29 AD2 SER D 49 LEU D 76 1 28 HELIX 30 AD3 ASP D 78 ASN D 90 1 13 HELIX 31 AD4 VAL D 93 GLY D 111 1 19 HELIX 32 AD5 GLY D 111 ILE D 126 1 16 SITE 1 AC1 14 PHE B 23 ASP B 29 THR B 33 TRP B 102 SITE 2 AC1 14 ILE B 105 SER B 106 PHE B 110 TYR B 118 SITE 3 AC1 14 ILE B 139 LEU B 140 VAL C 124 PRO C 129 SITE 4 AC1 14 TYR C 132 PRO C 134 SITE 1 AC2 9 PHE C 23 LEU C 30 THR C 33 TRP C 102 SITE 2 AC2 9 ILE C 105 SER C 106 PHE C 110 TYR C 118 SITE 3 AC2 9 LEU C 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000