HEADER VIRUS LIKE PARTICLE 13-DEC-17 6BVN TITLE CRYO-EM STRUCTURE OF HEPATITIS B VIRUS T=3 CAPSID IN COMPLEX WITH THE TITLE 2 FLUORESCENT ALLOSTERIC MODULATOR HAP-TAMRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: C, B, A; COMPND 4 FRAGMENT: UNP RESIDUES 1-149; COMPND 5 SYNONYM: CORE ANTIGEN, CORE PROTEIN, HBCAG, P21.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS B VIRUS GENOTYPE D SUBTYPE ADW; SOURCE 3 ORGANISM_COMMON: ISOLATE UNITED KINGDOM/ADYW/1979; SOURCE 4 ORGANISM_TAXID: 10419; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAPSID, CPAM, ANTIVIRAL, FLUORESCENT, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR C.SCHLICKSUP,J.C.WANG,A.ZLOTNICK REVDAT 4 13-APR-22 6BVN 1 COMPND REMARK FORMUL REVDAT 3 27-NOV-19 6BVN 1 REMARK REVDAT 2 14-FEB-18 6BVN 1 REMARK REVDAT 1 07-FEB-18 6BVN 0 JRNL AUTH C.J.SCHLICKSUP,J.C.WANG,S.FRANCIS,B.VENKATAKRISHNAN, JRNL AUTH 2 W.W.TURNER,M.VANNIEUWENHZE,A.ZLOTNICK JRNL TITL HEPATITIS B VIRUS CORE PROTEIN ALLOSTERIC MODULATORS CAN JRNL TITL 2 DISTORT AND DISRUPT INTACT CAPSIDS. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29377794 JRNL DOI 10.7554/ELIFE.31473 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, COOT, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5D7Y REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.000 REMARK 3 NUMBER OF PARTICLES : 16008 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6BVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231688. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HEPATITIS B VIRUS T=3 CAPSID REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 10.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 679 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3300.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.499480 0.809338 94.05324 REMARK 350 BIOMT2 2 0.500278 0.809109 0.308325 -150.41480 REMARK 350 BIOMT3 2 -0.808845 0.309616 0.499908 243.33603 REMARK 350 BIOMT1 3 -0.809016 -0.307898 0.500691 395.18761 REMARK 350 BIOMT2 3 0.309987 0.500241 0.808497 -150.03734 REMARK 350 BIOMT3 3 -0.499401 0.809295 -0.309259 242.33624 REMARK 350 BIOMT1 4 -0.809016 0.309987 -0.499401 487.24564 REMARK 350 BIOMT2 4 -0.307898 0.500241 0.809295 0.61074 REMARK 350 BIOMT3 4 0.500691 0.808497 -0.309259 -1.61770 REMARK 350 BIOMT1 5 0.309017 0.500278 -0.808845 243.00626 REMARK 350 BIOMT2 5 -0.499480 0.809109 0.309616 93.33892 REMARK 350 BIOMT3 5 0.809338 0.308325 0.499908 -151.38973 REMARK 350 BIOMT1 6 -0.499043 0.809708 0.308754 93.27314 REMARK 350 BIOMT2 6 0.809708 0.308750 0.499046 -150.11707 REMARK 350 BIOMT3 6 0.308754 0.499046 -0.809706 242.34586 REMARK 350 BIOMT1 7 0.001132 0.999999 0.000107 -0.32466 REMARK 350 BIOMT2 7 0.001024 -0.000108 0.999999 1.03388 REMARK 350 BIOMT3 7 0.999999 -0.001132 -0.001024 -0.70946 REMARK 350 BIOMT1 8 0.500541 0.808576 0.309295 -150.60679 REMARK 350 BIOMT2 8 -0.808582 0.309017 0.500703 244.48237 REMARK 350 BIOMT3 8 0.309279 -0.500713 0.808476 93.26479 REMARK 350 BIOMT1 9 0.309017 0.499979 0.809030 -149.88846 REMARK 350 BIOMT2 9 -0.500262 0.808925 -0.308833 243.79086 REMARK 350 BIOMT3 9 -0.808855 -0.309293 0.500092 394.39940 REMARK 350 BIOMT1 10 -0.308760 0.500678 0.808696 0.83763 REMARK 350 BIOMT2 10 0.499896 0.808760 -0.309857 -0.08500 REMARK 350 BIOMT3 10 -0.809179 0.308592 -0.500000 486.53657 REMARK 350 BIOMT1 11 0.307344 -0.500137 -0.809570 487.84090 REMARK 350 BIOMT2 11 -0.500137 -0.808668 0.309709 488.45476 REMARK 350 BIOMT3 11 -0.809570 0.309709 -0.498676 486.03768 REMARK 350 BIOMT1 12 0.499583 -0.808833 -0.310170 394.97813 REMARK 350 BIOMT2 12 -0.809616 -0.308601 -0.499287 638.41413 REMARK 350 BIOMT3 12 0.308121 0.500554 -0.809016 241.96445 REMARK 350 BIOMT1 13 0.000618 -1.000000 -0.000109 488.15044 REMARK 350 BIOMT2 13 -0.000726 0.000108 -1.000000 487.19078 REMARK 350 BIOMT3 13 1.000000 0.000618 -0.000726 -1.20929 REMARK 350 BIOMT1 14 -0.499999 -0.809451 -0.307880 638.59687 REMARK 350 BIOMT2 14 0.808674 -0.309166 -0.500462 243.77025 REMARK 350 BIOMT3 14 0.309914 -0.499205 0.809165 92.57430 REMARK 350 BIOMT1 15 -0.310432 -0.500519 -0.808154 638.40556 REMARK 350 BIOMT2 15 0.500022 -0.809017 0.308983 244.55143 REMARK 350 BIOMT3 15 -0.808462 -0.308176 0.501415 393.70949 REMARK 350 BIOMT1 16 -0.808300 -0.309571 0.500816 395.39107 REMARK 350 BIOMT2 16 -0.309571 -0.500082 -0.808755 638.25686 REMARK 350 BIOMT3 16 0.500816 -0.808755 0.308382 243.18198 REMARK 350 BIOMT1 17 -0.809733 0.308314 -0.499275 487.79839 REMARK 350 BIOMT2 17 0.308314 -0.500400 -0.809038 487.56134 REMARK 350 BIOMT3 17 -0.499275 -0.809038 0.310132 486.97450 REMARK 350 BIOMT1 18 0.307857 0.499322 -0.809878 243.77384 REMARK 350 BIOMT2 18 0.499322 -0.809366 -0.309200 394.95874 REMARK 350 BIOMT3 18 -0.809878 -0.309200 -0.498491 637.17378 REMARK 350 BIOMT1 19 0.999998 -0.000514 -0.001750 0.55105 REMARK 350 BIOMT2 19 -0.000514 -1.000000 0.000000 488.42270 REMARK 350 BIOMT3 19 -0.001750 0.000000 -0.999998 486.20951 REMARK 350 BIOMT1 20 0.310175 -0.500437 0.808303 94.25565 REMARK 350 BIOMT2 20 -0.500437 -0.808852 -0.308741 638.78921 REMARK 350 BIOMT3 20 0.808303 -0.308741 -0.501323 242.70918 REMARK 350 BIOMT1 21 -0.309274 -0.499862 0.809004 245.16879 REMARK 350 BIOMT2 21 -0.499563 0.809274 0.309051 93.45596 REMARK 350 BIOMT3 21 -0.809189 -0.308567 -0.500000 637.21745 REMARK 350 BIOMT1 22 -1.000000 0.000514 0.000000 488.12703 REMARK 350 BIOMT2 22 0.000514 1.000000 -0.000298 -0.05302 REMARK 350 BIOMT3 22 0.000000 -0.000298 -1.000000 485.85558 REMARK 350 BIOMT1 23 -0.308760 0.499896 -0.809179 393.99645 REMARK 350 BIOMT2 23 0.500678 0.808760 0.308592 -150.49201 REMARK 350 BIOMT3 23 0.808696 -0.309857 -0.500000 242.56441 REMARK 350 BIOMT1 24 0.809175 0.308155 -0.500276 92.86232 REMARK 350 BIOMT2 24 0.309720 0.499841 0.808846 -149.95944 REMARK 350 BIOMT3 24 0.499308 -0.809444 0.309017 243.56407 REMARK 350 BIOMT1 25 0.808858 -0.309730 0.499817 0.88177 REMARK 350 BIOMT2 25 -0.308463 0.500159 0.809130 0.80869 REMARK 350 BIOMT3 25 -0.500599 -0.808646 0.309017 487.47306 REMARK 350 BIOMT1 26 -0.000618 -0.001024 -0.999999 487.41842 REMARK 350 BIOMT2 26 1.000000 -0.000406 -0.000618 0.27162 REMARK 350 BIOMT3 26 -0.000405 -0.999999 0.001024 486.89005 REMARK 350 BIOMT1 27 0.808141 -0.310136 -0.500723 244.17845 REMARK 350 BIOMT2 27 0.309314 -0.500000 0.808904 94.23558 REMARK 350 BIOMT3 27 -0.501232 -0.808589 -0.308141 637.51587 REMARK 350 BIOMT1 28 0.499583 -0.809616 0.308121 244.99168 REMARK 350 BIOMT2 28 -0.808833 -0.308601 0.500554 395.37032 REMARK 350 BIOMT3 28 -0.310170 -0.499287 -0.809016 637.01531 REMARK 350 BIOMT1 29 -0.499875 -0.809200 0.308738 488.73426 REMARK 350 BIOMT2 29 -0.809200 0.309284 -0.499538 487.51788 REMARK 350 BIOMT3 29 0.308738 -0.499538 -0.809409 486.08013 REMARK 350 BIOMT1 30 -0.809017 -0.309463 -0.499724 638.56223 REMARK 350 BIOMT2 30 0.308720 0.499759 -0.809279 243.33346 REMARK 350 BIOMT3 30 0.500184 -0.808995 -0.308776 393.29761 REMARK 350 BIOMT1 31 -0.499999 0.809457 -0.307864 243.33858 REMARK 350 BIOMT2 31 -0.808484 -0.308868 0.500954 395.25319 REMARK 350 BIOMT3 31 0.310411 0.499379 0.808867 -151.27763 REMARK 350 BIOMT1 32 0.499459 0.809359 -0.308995 -0.35658 REMARK 350 BIOMT2 32 -0.809549 0.309017 -0.499138 487.57105 REMARK 350 BIOMT3 32 -0.308497 0.499446 0.809558 -0.36996 REMARK 350 BIOMT1 33 0.809175 0.309720 0.499308 -150.31005 REMARK 350 BIOMT2 33 0.308155 0.499841 -0.809444 243.49137 REMARK 350 BIOMT3 33 -0.500276 0.808846 0.309017 92.48536 REMARK 350 BIOMT1 34 0.001132 0.001024 0.999999 0.70877 REMARK 350 BIOMT2 34 0.999999 -0.000108 -0.001132 0.32397 REMARK 350 BIOMT3 34 0.000107 0.999999 -0.001024 -1.03457 REMARK 350 BIOMT1 35 -0.807982 0.309879 0.501139 243.99701 REMARK 350 BIOMT2 35 0.309879 -0.499918 0.808738 94.11793 REMARK 350 BIOMT3 35 0.501139 0.808738 0.307900 -151.68838 REMARK 350 BIOMT1 36 0.809891 -0.308571 0.498859 0.57930 REMARK 350 BIOMT2 36 0.308047 -0.500000 -0.809387 487.61377 REMARK 350 BIOMT3 36 0.499183 0.809187 -0.309891 -1.26435 REMARK 350 BIOMT1 37 -0.307601 -0.499738 0.809719 244.55621 REMARK 350 BIOMT2 37 0.499721 -0.809017 -0.309468 394.84094 REMARK 350 BIOMT3 37 0.809729 0.309441 0.498584 -151.43598 REMARK 350 BIOMT1 38 -0.999998 0.000000 0.001750 487.82702 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000298 488.22487 REMARK 350 BIOMT3 38 0.001750 0.000298 0.999998 -0.49957 REMARK 350 BIOMT1 39 -0.310432 0.500022 -0.808462 394.19975 REMARK 350 BIOMT2 39 -0.500519 -0.809017 -0.308176 638.71215 REMARK 350 BIOMT3 39 -0.808154 0.308983 0.501415 242.95589 REMARK 350 BIOMT1 40 0.808141 0.309314 -0.501232 93.06410 REMARK 350 BIOMT2 40 -0.310136 -0.500000 -0.808589 638.33447 REMARK 350 BIOMT3 40 -0.500723 0.808904 -0.308141 242.48323 REMARK 350 BIOMT1 41 -0.309274 -0.499563 -0.809189 638.14076 REMARK 350 BIOMT2 41 -0.499862 0.809274 -0.308567 243.54312 REMARK 350 BIOMT3 41 0.809004 0.309051 -0.500000 91.38350 REMARK 350 BIOMT1 42 0.309017 -0.500262 -0.808855 487.28932 REMARK 350 BIOMT2 42 0.499979 0.808925 -0.309293 -0.28269 REMARK 350 BIOMT3 42 0.809030 -0.308833 0.500092 -0.68094 REMARK 350 BIOMT1 43 0.499459 -0.809549 -0.308497 394.77671 REMARK 350 BIOMT2 43 0.809359 0.309017 0.499446 -150.19439 REMARK 350 BIOMT3 43 -0.308995 -0.499138 0.809558 243.55449 REMARK 350 BIOMT1 44 -0.001132 -0.999999 0.000407 488.45222 REMARK 350 BIOMT2 44 0.000726 0.000406 1.000000 0.98090 REMARK 350 BIOMT3 44 -0.999999 0.001132 0.000726 486.56474 REMARK 350 BIOMT1 45 -0.500957 -0.808417 -0.309038 638.85947 REMARK 350 BIOMT2 45 -0.808417 0.309582 0.500621 244.32407 REMARK 350 BIOMT3 45 -0.309038 0.500621 -0.808625 392.51789 REMARK 350 BIOMT1 46 -0.499999 -0.808484 0.310411 488.18309 REMARK 350 BIOMT2 46 0.809457 -0.308868 0.499379 0.65373 REMARK 350 BIOMT3 46 -0.307864 0.500954 0.808867 -0.72496 REMARK 350 BIOMT1 47 -0.810050 -0.308304 -0.498767 638.29877 REMARK 350 BIOMT2 47 -0.308304 -0.499600 0.809536 244.76101 REMARK 350 BIOMT3 47 -0.498767 0.809536 0.309650 91.79510 REMARK 350 BIOMT1 48 -0.001132 0.000726 -0.999999 487.11644 REMARK 350 BIOMT2 48 -0.999999 0.000406 0.001132 487.90059 REMARK 350 BIOMT3 48 0.000407 1.000000 0.000726 -1.53280 REMARK 350 BIOMT1 49 0.808858 -0.308463 -0.500599 243.56494 REMARK 350 BIOMT2 49 -0.309730 0.500159 -0.808646 394.06183 REMARK 350 BIOMT3 49 0.499817 0.809130 0.309017 -151.73267 REMARK 350 BIOMT1 50 0.500541 -0.808582 0.309279 244.22416 REMARK 350 BIOMT2 50 0.808576 0.309017 -0.500713 92.92671 REMARK 350 BIOMT3 50 0.309295 0.500703 0.808476 -151.23339 REMARK 350 BIOMT1 51 0.809891 0.308047 0.499183 -150.04584 REMARK 350 BIOMT2 51 -0.308571 -0.500000 0.809187 245.00871 REMARK 350 BIOMT3 51 0.498859 -0.809387 -0.309891 393.98744 REMARK 350 BIOMT1 52 0.000618 -0.000726 1.000000 1.26146 REMARK 350 BIOMT2 52 -1.000000 0.000108 0.000618 488.09836 REMARK 350 BIOMT3 52 -0.000109 -1.000000 -0.000726 487.24283 REMARK 350 BIOMT1 53 -0.809017 0.308720 0.500184 244.76470 REMARK 350 BIOMT2 53 -0.309463 0.499759 -0.808995 394.17921 REMARK 350 BIOMT3 53 -0.499724 -0.809279 -0.308776 637.47070 REMARK 350 BIOMT1 54 -0.500125 0.808741 -0.309536 243.95068 REMARK 350 BIOMT2 54 0.808741 0.308452 -0.500795 93.04433 REMARK 350 BIOMT3 54 -0.309536 -0.500795 -0.808327 637.06123 REMARK 350 BIOMT1 55 0.500415 0.808325 -0.310155 -0.05566 REMARK 350 BIOMT2 55 0.809292 -0.309433 0.499297 0.85189 REMARK 350 BIOMT3 55 0.307622 -0.500861 -0.809016 486.58031 REMARK 350 BIOMT1 56 -0.000618 1.000000 -0.000405 0.22710 REMARK 350 BIOMT2 56 -0.001024 -0.000406 -0.999999 487.38899 REMARK 350 BIOMT3 56 -0.999999 -0.000618 0.001024 486.91954 REMARK 350 BIOMT1 57 0.500415 0.809292 0.307622 -150.34445 REMARK 350 BIOMT2 57 0.808325 -0.309433 -0.500861 244.01787 REMARK 350 BIOMT3 57 -0.310155 0.499297 -0.809016 393.20853 REMARK 350 BIOMT1 58 0.310689 0.500103 0.808313 -150.15276 REMARK 350 BIOMT2 58 0.500103 -0.809182 0.308417 244.70914 REMARK 350 BIOMT3 58 0.808313 0.308417 -0.501507 92.07313 REMARK 350 BIOMT1 59 -0.307601 0.499721 0.809729 0.53726 REMARK 350 BIOMT2 59 -0.499738 -0.809017 0.309441 488.50749 REMARK 350 BIOMT3 59 0.809719 -0.309468 0.498584 -0.32779 REMARK 350 BIOMT1 60 -0.499999 0.808674 0.309914 93.47712 REMARK 350 BIOMT2 60 -0.809451 -0.309166 -0.499205 638.49188 REMARK 350 BIOMT3 60 -0.307880 -0.500462 0.809165 243.70072 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 145 REMARK 465 THR C 146 REMARK 465 THR C 147 REMARK 465 VAL C 148 REMARK 465 VAL C 149 REMARK 465 CYS C 150 REMARK 465 GLU B 145 REMARK 465 THR B 146 REMARK 465 THR B 147 REMARK 465 VAL B 148 REMARK 465 VAL B 149 REMARK 465 CYS B 150 REMARK 465 GLU A 145 REMARK 465 THR A 146 REMARK 465 THR A 147 REMARK 465 VAL A 148 REMARK 465 VAL A 149 REMARK 465 CYS A 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 14 OG SER A 17 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 141 136.93 -170.62 REMARK 500 TYR B 6 45.04 -90.96 REMARK 500 ALA B 11 -169.70 -163.17 REMARK 500 THR B 91 -60.50 -93.96 REMARK 500 ALA A 11 -179.85 -69.89 REMARK 500 SER A 141 144.15 -172.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 47 ALA B 48 -142.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E9D B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-7294 RELATED DB: EMDB REMARK 900 HEPATITIS B VIRUS T=4 CAPSID REMARK 900 RELATED ID: 6BVF RELATED DB: PDB REMARK 900 HEPATITIS B VIRUS T=4 CAPSID REMARK 900 RELATED ID: EMD-7295 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HEPATITIS B VIRUS T=3 CAPSID IN COMPLEX WITH REMARK 900 THE FLUORESCENT ALLOSTERIC MODULATOR HAP-TAMRA DBREF 6BVN C 1 149 UNP P03147 CAPSD_HBVD1 1 149 DBREF 6BVN B 1 149 UNP P03147 CAPSD_HBVD1 1 149 DBREF 6BVN A 1 149 UNP P03147 CAPSD_HBVD1 1 149 SEQADV 6BVN ALA C 48 UNP P03147 CYS 48 ENGINEERED MUTATION SEQADV 6BVN ALA C 61 UNP P03147 CYS 61 ENGINEERED MUTATION SEQADV 6BVN ALA C 107 UNP P03147 CYS 107 ENGINEERED MUTATION SEQADV 6BVN CYS C 150 UNP P03147 EXPRESSION TAG SEQADV 6BVN ALA B 48 UNP P03147 CYS 48 ENGINEERED MUTATION SEQADV 6BVN ALA B 61 UNP P03147 CYS 61 ENGINEERED MUTATION SEQADV 6BVN ALA B 107 UNP P03147 CYS 107 ENGINEERED MUTATION SEQADV 6BVN CYS B 150 UNP P03147 EXPRESSION TAG SEQADV 6BVN ALA A 48 UNP P03147 CYS 48 ENGINEERED MUTATION SEQADV 6BVN ALA A 61 UNP P03147 CYS 61 ENGINEERED MUTATION SEQADV 6BVN ALA A 107 UNP P03147 CYS 107 ENGINEERED MUTATION SEQADV 6BVN CYS A 150 UNP P03147 EXPRESSION TAG SEQRES 1 C 150 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 C 150 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 C 150 VAL ARG ASP LEU LEU ASP THR ALA ALA ALA LEU TYR ARG SEQRES 4 C 150 ASP ALA LEU GLU SER PRO GLU HIS ALA SER PRO HIS HIS SEQRES 5 C 150 THR ALA LEU ARG GLN ALA ILE LEU ALA TRP GLY ASP LEU SEQRES 6 C 150 MET THR LEU ALA THR TRP VAL GLY THR ASN LEU GLU ASP SEQRES 7 C 150 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 C 150 ASN VAL GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 C 150 ILE SER ALA LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 C 150 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 C 150 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 C 150 PRO GLU THR THR VAL VAL CYS SEQRES 1 B 150 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 B 150 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 B 150 VAL ARG ASP LEU LEU ASP THR ALA ALA ALA LEU TYR ARG SEQRES 4 B 150 ASP ALA LEU GLU SER PRO GLU HIS ALA SER PRO HIS HIS SEQRES 5 B 150 THR ALA LEU ARG GLN ALA ILE LEU ALA TRP GLY ASP LEU SEQRES 6 B 150 MET THR LEU ALA THR TRP VAL GLY THR ASN LEU GLU ASP SEQRES 7 B 150 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 B 150 ASN VAL GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 B 150 ILE SER ALA LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 B 150 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 B 150 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 B 150 PRO GLU THR THR VAL VAL CYS SEQRES 1 A 150 MET ASP ILE ASP PRO TYR LYS GLU PHE GLY ALA THR VAL SEQRES 2 A 150 GLU LEU LEU SER PHE LEU PRO SER ASP PHE PHE PRO SER SEQRES 3 A 150 VAL ARG ASP LEU LEU ASP THR ALA ALA ALA LEU TYR ARG SEQRES 4 A 150 ASP ALA LEU GLU SER PRO GLU HIS ALA SER PRO HIS HIS SEQRES 5 A 150 THR ALA LEU ARG GLN ALA ILE LEU ALA TRP GLY ASP LEU SEQRES 6 A 150 MET THR LEU ALA THR TRP VAL GLY THR ASN LEU GLU ASP SEQRES 7 A 150 PRO ALA SER ARG ASP LEU VAL VAL SER TYR VAL ASN THR SEQRES 8 A 150 ASN VAL GLY LEU LYS PHE ARG GLN LEU LEU TRP PHE HIS SEQRES 9 A 150 ILE SER ALA LEU THR PHE GLY ARG GLU THR VAL LEU GLU SEQRES 10 A 150 TYR LEU VAL SER PHE GLY VAL TRP ILE ARG THR PRO PRO SEQRES 11 A 150 ALA TYR ARG PRO PRO ASN ALA PRO ILE LEU SER THR LEU SEQRES 12 A 150 PRO GLU THR THR VAL VAL CYS HET E9D B 201 85 HETNAM E9D HETEROARYLDIHYDROPYRIMIDINE TETRAMETHYLRODAMINE HETSYN E9D HAP-TAMRA FORMUL 4 E9D C51 H48 CL F N8 O7 HELIX 1 AA1 TYR C 6 GLY C 10 5 5 HELIX 2 AA2 THR C 12 LEU C 19 1 8 HELIX 3 AA3 PRO C 20 PHE C 24 5 5 HELIX 4 AA4 SER C 26 TYR C 38 1 13 HELIX 5 AA5 TYR C 38 GLU C 43 1 6 HELIX 6 AA6 SER C 49 ASN C 75 1 27 HELIX 7 AA7 ASP C 78 VAL C 93 1 16 HELIX 8 AA8 GLY C 94 ILE C 126 1 33 HELIX 9 AA9 GLU B 14 PHE B 18 5 5 HELIX 10 AB1 SER B 26 TYR B 38 1 13 HELIX 11 AB2 TYR B 38 GLU B 43 1 6 HELIX 12 AB3 SER B 49 LEU B 76 1 28 HELIX 13 AB4 ASP B 78 GLN B 99 1 22 HELIX 14 AB5 GLN B 99 GLY B 111 1 13 HELIX 15 AB6 GLY B 111 THR B 128 1 18 HELIX 16 AB7 PRO B 129 ARG B 133 5 5 HELIX 17 AB8 GLU A 14 PHE A 18 5 5 HELIX 18 AB9 SER A 26 TYR A 38 1 13 HELIX 19 AC1 TYR A 38 GLU A 43 1 6 HELIX 20 AC2 SER A 49 ASN A 75 1 27 HELIX 21 AC3 ASP A 78 PHE A 97 1 20 HELIX 22 AC4 PHE A 97 GLY A 111 1 15 HELIX 23 AC5 GLY A 111 THR A 128 1 18 SITE 1 AC1 17 VAL C 124 TYR C 132 PRO C 134 PHE B 23 SITE 2 AC1 17 PRO B 25 ASP B 29 LEU B 30 THR B 33 SITE 3 AC1 17 TRP B 102 ILE B 105 SER B 106 THR B 109 SITE 4 AC1 17 PHE B 110 TYR B 118 ASN B 136 ILE B 139 SITE 5 AC1 17 LEU B 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000