data_6CFH # _entry.id 6CFH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6CFH pdb_00006cfh 10.2210/pdb6cfh/pdb WWPDB D_1000232662 ? ? EMDB EMD-7467 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-23 2 'Structure model' 1 1 2018-06-06 3 'Structure model' 1 2 2018-06-13 4 'Structure model' 1 3 2019-12-18 5 'Structure model' 1 4 2020-06-17 6 'Structure model' 1 5 2021-06-30 7 'Structure model' 1 6 2021-10-13 8 'Structure model' 1 7 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Source and taxonomy' 8 5 'Structure model' 'Structure summary' 9 6 'Structure model' 'Data collection' 10 7 'Structure model' 'Database references' 11 7 'Structure model' 'Refinement description' 12 8 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' pdbx_audit_support 5 5 'Structure model' entity 6 5 'Structure model' entity_name_com 7 5 'Structure model' pdbx_entity_src_syn 8 5 'Structure model' struct_ref 9 5 'Structure model' struct_ref_seq 10 6 'Structure model' diffrn_detector 11 7 'Structure model' database_2 12 7 'Structure model' pdbx_refine_tls 13 7 'Structure model' pdbx_refine_tls_group 14 7 'Structure model' refine 15 7 'Structure model' refine_hist 16 8 'Structure model' chem_comp_atom 17 8 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 4 'Structure model' '_pdbx_audit_support.funding_organization' 8 5 'Structure model' '_entity.pdbx_description' 9 5 'Structure model' '_entity.pdbx_fragment' 10 5 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 11 5 'Structure model' '_struct_ref.db_code' 12 5 'Structure model' '_struct_ref.db_name' 13 5 'Structure model' '_struct_ref.pdbx_align_begin' 14 5 'Structure model' '_struct_ref.pdbx_db_accession' 15 5 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 16 5 'Structure model' '_struct_ref_seq.pdbx_db_accession' 17 6 'Structure model' '_diffrn_detector.detector' 18 7 'Structure model' '_database_2.pdbx_DOI' 19 7 'Structure model' '_database_2.pdbx_database_accession' 20 7 'Structure model' '_pdbx_refine_tls.pdbx_refine_id' 21 7 'Structure model' '_pdbx_refine_tls_group.pdbx_refine_id' 22 7 'Structure model' '_refine_hist.pdbx_refine_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6CFH _pdbx_database_status.recvd_initial_deposition_date 2018-02-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 6cb9 unspecified PDB . 6cew unspecified PDB . 6cf4 unspecified EMDB 'SWGMMGMLASQ segment from the low complexity domain of TDP-43, residues 333-343' EMD-7467 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guenther, E.L.' 1 ? 'Rodriguez, J.A.' 2 ? 'Sawaya, M.R.' 3 ? 'Eisenberg, D.S.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 463 _citation.page_last 471 _citation.title 'Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0064-2 _citation.pdbx_database_id_PubMed 29786080 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guenther, E.L.' 1 ? primary 'Cao, Q.' 2 ? primary 'Trinh, H.' 3 ? primary 'Lu, J.' 4 ? primary 'Sawaya, M.R.' 5 ? primary 'Cascio, D.' 6 ? primary 'Boyer, D.R.' 7 ? primary 'Rodriguez, J.A.' 8 ? primary 'Hughes, M.P.' 9 ? primary 'Eisenberg, D.S.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'TAR DNA-binding protein 43' _entity.formula_weight 1198.436 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SWGMMGMLASQ segment' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name TDP-43 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SWGMMGMLASQ _entity_poly.pdbx_seq_one_letter_code_can SWGMMGMLASQ _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TRP n 1 3 GLY n 1 4 MET n 1 5 MET n 1 6 GLY n 1 7 MET n 1 8 LEU n 1 9 ALA n 1 10 SER n 1 11 GLN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'Synthetic peptide SWGMMGMLASQ corresponding tosegment 333-343 of TDP-43' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 333 333 SER SER A . n A 1 2 TRP 2 334 334 TRP TRP A . n A 1 3 GLY 3 335 335 GLY GLY A . n A 1 4 MET 4 336 336 MET MET A . n A 1 5 MET 5 337 337 MET MET A . n A 1 6 GLY 6 338 338 GLY GLY A . n A 1 7 MET 7 339 339 MET MET A . n A 1 8 LEU 8 340 340 LEU LEU A . n A 1 9 ALA 9 341 341 ALA ALA A . n A 1 10 SER 10 342 342 SER SER A . n A 1 11 GLN 11 343 343 GLN GLN A . n B 1 1 SER 1 333 333 SER SER B . n B 1 2 TRP 2 334 334 TRP TRP B . n B 1 3 GLY 3 335 335 GLY GLY B . n B 1 4 MET 4 336 336 MET MET B . n B 1 5 MET 5 337 337 MET MET B . n B 1 6 GLY 6 338 338 GLY GLY B . n B 1 7 MET 7 339 339 MET MET B . n B 1 8 LEU 8 340 340 LEU LEU B . n B 1 9 ALA 9 341 341 ALA ALA B . n B 1 10 SER 10 342 342 SER SER B . n B 1 11 GLN 11 343 343 GLN GLN B . n # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id GLN _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 343 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id NE2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id GLN _pdbx_unobs_or_zero_occ_atoms.label_seq_id 11 _pdbx_unobs_or_zero_occ_atoms.label_atom_id NE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1 ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk 'Wed Dec 6 12:15:36 2017 (svn exported)' ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program 2.7.17 3 ? refinement ? ? 'Gerard Bricogne' buster-develop@GlobalPhasing.com ? ? ? ? ? http://www.globalphasing.com/buster/ ? BUSTER ? ? program 2.10.3 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 5 # _cell.angle_alpha 97.170 _cell.angle_alpha_esd ? _cell.angle_beta 92.890 _cell.angle_beta_esd ? _cell.angle_gamma 105.940 _cell.angle_gamma_esd ? _cell.entry_id 6CFH _cell.details ? _cell.formula_units_Z ? _cell.length_a 8.560 _cell.length_a_esd ? _cell.length_b 9.600 _cell.length_b_esd ? _cell.length_c 39.970 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6CFH _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method Batch _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'phosphate buffered saline, shaken for 80 hours' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'TVIPS F416 CMOS CAMERA' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-08-18 # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'TRANSMISSION ELECTRON MICROSCOPE' _diffrn_source.target ? _diffrn_source.type 'TECNAI F20 TEM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 14.370 _reflns.entry_id 6CFH _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 13.170 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1819 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.230 _reflns.pdbx_Rmerge_I_obs 0.208 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.310 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.955 _reflns.pdbx_scaling_rejects 5 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.231 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 7695 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.987 _reflns.pdbx_R_split ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split _reflns_shell.pdbx_CC_star 1.500 1.550 ? 0.680 ? 398 188 ? 168 89.400 ? ? ? ? 0.855 ? ? ? ? ? ? ? ? 2.369 ? ? ? ? 1.096 ? ? 1 1 0.720 ? ? 1.550 1.590 ? 1.160 ? 375 157 ? 141 89.800 ? ? ? ? 0.489 ? ? ? ? ? ? ? ? 2.660 ? ? ? ? 0.611 ? ? 2 1 0.962 ? ? 1.590 1.650 ? 1.110 ? 322 139 ? 128 92.100 ? ? ? ? 0.757 ? ? ? ? ? ? ? ? 2.516 ? ? ? ? 0.954 ? ? 3 1 0.570 ? ? 1.650 1.700 ? 1.200 ? 405 145 ? 140 96.600 ? ? ? ? 0.583 ? ? ? ? ? ? ? ? 2.893 ? ? ? ? 0.702 ? ? 4 1 0.748 ? ? 1.700 1.770 ? 1.440 ? 390 131 ? 122 93.100 ? ? ? ? 0.664 ? ? ? ? ? ? ? ? 3.197 ? ? ? ? 0.794 ? ? 5 1 0.617 ? ? 1.770 1.840 ? 1.800 ? 465 139 ? 128 92.100 ? ? ? ? 0.530 ? ? ? ? ? ? ? ? 3.633 ? ? ? ? 0.611 ? ? 6 1 0.885 ? ? 1.840 1.920 ? 2.580 ? 630 132 ? 124 93.900 ? ? ? ? 0.405 ? ? ? ? ? ? ? ? 5.081 ? ? ? ? 0.449 ? ? 7 1 0.970 ? ? 1.920 2.020 ? 3.970 ? 524 108 ? 101 93.500 ? ? ? ? 0.279 ? ? ? ? ? ? ? ? 5.188 ? ? ? ? 0.309 ? ? 8 1 0.954 ? ? 2.020 2.130 ? 3.550 ? 641 135 ? 126 93.300 ? ? ? ? 0.309 ? ? ? ? ? ? ? ? 5.087 ? ? ? ? 0.345 ? ? 9 1 0.969 ? ? 2.130 2.250 ? 4.790 ? 568 100 ? 100 100.000 ? ? ? ? 0.243 ? ? ? ? ? ? ? ? 5.680 ? ? ? ? 0.267 ? ? 10 1 0.987 ? ? 2.250 2.410 ? 5.080 ? 626 105 ? 103 98.100 ? ? ? ? 0.208 ? ? ? ? ? ? ? ? 6.078 ? ? ? ? 0.227 ? ? 11 1 0.993 ? ? 2.410 2.600 ? 3.830 ? 435 87 ? 82 94.300 ? ? ? ? 0.326 ? ? ? ? ? ? ? ? 5.305 ? ? ? ? 0.365 ? ? 12 1 0.977 ? ? 2.600 2.850 ? 5.160 ? 517 105 ? 100 95.200 ? ? ? ? 0.224 ? ? ? ? ? ? ? ? 5.170 ? ? ? ? 0.253 ? ? 13 1 0.992 ? ? 2.850 3.190 ? 6.370 ? 428 74 ? 72 97.300 ? ? ? ? 0.231 ? ? ? ? ? ? ? ? 5.944 ? ? ? ? 0.254 ? ? 14 1 0.983 ? ? 3.190 3.680 ? 7.960 ? 345 71 ? 66 93.000 ? ? ? ? 0.172 ? ? ? ? ? ? ? ? 5.227 ? ? ? ? 0.190 ? ? 15 1 0.984 ? ? 3.680 4.510 ? 9.210 ? 297 61 ? 55 90.200 ? ? ? ? 0.170 ? ? ? ? ? ? ? ? 5.400 ? ? ? ? 0.187 ? ? 16 1 0.983 ? ? 4.510 6.380 ? 9.290 ? 196 39 ? 38 97.400 ? ? ? ? 0.134 ? ? ? ? ? ? ? ? 5.158 ? ? ? ? 0.146 ? ? 17 1 0.983 ? ? 6.380 13.170 ? 7.430 ? 133 29 ? 25 86.200 ? ? ? ? 0.132 ? ? ? ? ? ? ? ? 5.320 ? ? ? ? 0.147 ? ? 18 1 0.997 ? ? # _refine.aniso_B[1][1] -2.3572 _refine.aniso_B[1][2] -0.8318 _refine.aniso_B[1][3] -1.5911 _refine.aniso_B[2][2] 0.5881 _refine.aniso_B[2][3] 0.4244 _refine.aniso_B[3][3] 1.7692 _refine.B_iso_max 56.350 _refine.B_iso_mean 18.1400 _refine.B_iso_min 4.510 _refine.correlation_coeff_Fo_to_Fc 0.9080 _refine.correlation_coeff_Fo_to_Fc_free 0.8890 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6CFH _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 13.1700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1819 _refine.ls_number_reflns_R_free 182 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.1000 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2830 _refine.ls_R_factor_R_free 0.3130 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2800 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1410 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1390 _refine.pdbx_overall_SU_R_Blow_DPI 0.1550 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.2310 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6CFH _refine_analyze.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.390 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 13.1700 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 161 _refine_hist.pdbx_number_residues_total 22 _refine_hist.pdbx_number_atoms_protein 161 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 62 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 4 ? t_trig_c_planes 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 44 ? t_gen_planes 5.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 318 ? t_it 20.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 4 ? t_nbd 5.000 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_improper_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_pseud_angle ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 18 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_sum_occupancies ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_distance ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_angle ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? ? ? t_utility_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? ? ? 382 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 0.007 ? 318 ? t_bond_d 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 0.910 ? 564 ? t_angle_deg 2.000 HARMONIC 'ELECTRON CRYSTALLOGRAPHY' ? 1.690 ? ? ? t_omega_torsion ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 19.150 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 1.5000 _refine_ls_shell.d_res_low 1.6800 _refine_ls_shell.number_reflns_all 510 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_R_work 459 _refine_ls_shell.percent_reflns_obs 89.3200 _refine_ls_shell.percent_reflns_R_free 10.0000 _refine_ls_shell.R_factor_all 0.2199 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2387 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2178 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6CFH _struct.title 'SWGMMGMLASQ segment from the low complexity domain of TDP-43' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6CFH _struct_keywords.text 'Amyloid, steric zipper, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TADBP_HUMAN _struct_ref.pdbx_db_accession Q13148 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SWGMMGMLASQ _struct_ref.pdbx_align_begin 333 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6CFH A 1 ? 11 ? Q13148 333 ? 343 ? 333 343 2 1 6CFH B 1 ? 11 ? Q13148 333 ? 343 ? 333 343 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 2.6364535101 0.0000000000 1.0000000000 0.0000000000 -9.2308782296 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 -2.6364535101 0.0000000000 1.0000000000 0.0000000000 9.2308782296 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 8.5600000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 1_645 x+1,y-1,z 1.0000000000 0.0000000000 0.0000000000 11.1964535101 0.0000000000 1.0000000000 0.0000000000 -9.2308782296 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 5.2729070203 0.0000000000 1.0000000000 0.0000000000 -18.4617564591 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 -5.2729070203 0.0000000000 1.0000000000 0.0000000000 18.4617564591 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 1_665 x+1,y+1,z 1.0000000000 0.0000000000 0.0000000000 5.9235464899 0.0000000000 1.0000000000 0.0000000000 9.2308782296 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 1_635 x+1,y-2,z 1.0000000000 0.0000000000 0.0000000000 13.8329070203 0.0000000000 1.0000000000 0.0000000000 -18.4617564591 0.0000000000 0.0000000000 1.0000000000 0.0000000000 10 'crystal symmetry operation' 1_675 x+1,y+2,z 1.0000000000 0.0000000000 0.0000000000 3.2870929797 0.0000000000 1.0000000000 0.0000000000 18.4617564591 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 2 ? SER A 10 ? TRP A 334 SER A 342 AA1 2 TRP B 2 ? SER B 10 ? TRP B 334 SER B 342 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id TRP _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 2 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id TRP _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 334 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id SER _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 10 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id SER _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 342 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'ELECTRON CRYSTALLOGRAPHY' 1 ? refined 1.5567 -1.5670 8.5522 0.0123 -0.0584 -0.0025 0.0212 -0.0136 0.0207 0.4446 0.7719 0.1413 0.1553 0.2583 -0.0029 -0.0177 0.0214 -0.0036 0.0150 -0.0193 0.0100 0.0345 -0.0012 0.0081 'ELECTRON CRYSTALLOGRAPHY' 2 ? refined 0.0723 2.9365 8.5141 -0.0034 -0.0112 -0.0578 0.0524 0.0033 -0.0393 0.1750 1.0478 0.2632 -0.3835 -0.2677 0.2212 -0.0069 0.0206 -0.0137 -0.0133 0.0326 -0.0360 -0.0048 0.0040 0.0056 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'ELECTRON CRYSTALLOGRAPHY' 1 1 A 333 A 343 '{A|333 - 343}' ? ? ? ? ? 'ELECTRON CRYSTALLOGRAPHY' 2 2 B 333 B 343 '{B|333 - 343}' ? ? ? ? ? # _pdbx_phasing_MR.entry_id 6CFH _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.500 _pdbx_phasing_MR.d_res_low_rotation 13.170 _pdbx_phasing_MR.d_res_high_translation 1.500 _pdbx_phasing_MR.d_res_low_translation 13.170 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # _em_3d_fitting.entry_id 6CFH _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 17.4 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'maximum likihood' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6CFH _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details 'Density map was obtained using measured diffraction intensities and phases acquired from a molecular replacement program, phaser.' _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'crystal of SWGMMGMLASQ' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6CFH _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6CFH _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure BASIC _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 100 _em_imaging.recording_temperature_minimum 100 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6CFH _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6CFH _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLN N N N N 14 GLN CA C N S 15 GLN C C N N 16 GLN O O N N 17 GLN CB C N N 18 GLN CG C N N 19 GLN CD C N N 20 GLN OE1 O N N 21 GLN NE2 N N N 22 GLN OXT O N N 23 GLN H H N N 24 GLN H2 H N N 25 GLN HA H N N 26 GLN HB2 H N N 27 GLN HB3 H N N 28 GLN HG2 H N N 29 GLN HG3 H N N 30 GLN HE21 H N N 31 GLN HE22 H N N 32 GLN HXT H N N 33 GLY N N N N 34 GLY CA C N N 35 GLY C C N N 36 GLY O O N N 37 GLY OXT O N N 38 GLY H H N N 39 GLY H2 H N N 40 GLY HA2 H N N 41 GLY HA3 H N N 42 GLY HXT H N N 43 LEU N N N N 44 LEU CA C N S 45 LEU C C N N 46 LEU O O N N 47 LEU CB C N N 48 LEU CG C N N 49 LEU CD1 C N N 50 LEU CD2 C N N 51 LEU OXT O N N 52 LEU H H N N 53 LEU H2 H N N 54 LEU HA H N N 55 LEU HB2 H N N 56 LEU HB3 H N N 57 LEU HG H N N 58 LEU HD11 H N N 59 LEU HD12 H N N 60 LEU HD13 H N N 61 LEU HD21 H N N 62 LEU HD22 H N N 63 LEU HD23 H N N 64 LEU HXT H N N 65 MET N N N N 66 MET CA C N S 67 MET C C N N 68 MET O O N N 69 MET CB C N N 70 MET CG C N N 71 MET SD S N N 72 MET CE C N N 73 MET OXT O N N 74 MET H H N N 75 MET H2 H N N 76 MET HA H N N 77 MET HB2 H N N 78 MET HB3 H N N 79 MET HG2 H N N 80 MET HG3 H N N 81 MET HE1 H N N 82 MET HE2 H N N 83 MET HE3 H N N 84 MET HXT H N N 85 SER N N N N 86 SER CA C N S 87 SER C C N N 88 SER O O N N 89 SER CB C N N 90 SER OG O N N 91 SER OXT O N N 92 SER H H N N 93 SER H2 H N N 94 SER HA H N N 95 SER HB2 H N N 96 SER HB3 H N N 97 SER HG H N N 98 SER HXT H N N 99 TRP N N N N 100 TRP CA C N S 101 TRP C C N N 102 TRP O O N N 103 TRP CB C N N 104 TRP CG C Y N 105 TRP CD1 C Y N 106 TRP CD2 C Y N 107 TRP NE1 N Y N 108 TRP CE2 C Y N 109 TRP CE3 C Y N 110 TRP CZ2 C Y N 111 TRP CZ3 C Y N 112 TRP CH2 C Y N 113 TRP OXT O N N 114 TRP H H N N 115 TRP H2 H N N 116 TRP HA H N N 117 TRP HB2 H N N 118 TRP HB3 H N N 119 TRP HD1 H N N 120 TRP HE1 H N N 121 TRP HE3 H N N 122 TRP HZ2 H N N 123 TRP HZ3 H N N 124 TRP HH2 H N N 125 TRP HXT H N N 126 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLN N CA sing N N 13 GLN N H sing N N 14 GLN N H2 sing N N 15 GLN CA C sing N N 16 GLN CA CB sing N N 17 GLN CA HA sing N N 18 GLN C O doub N N 19 GLN C OXT sing N N 20 GLN CB CG sing N N 21 GLN CB HB2 sing N N 22 GLN CB HB3 sing N N 23 GLN CG CD sing N N 24 GLN CG HG2 sing N N 25 GLN CG HG3 sing N N 26 GLN CD OE1 doub N N 27 GLN CD NE2 sing N N 28 GLN NE2 HE21 sing N N 29 GLN NE2 HE22 sing N N 30 GLN OXT HXT sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 LEU N CA sing N N 41 LEU N H sing N N 42 LEU N H2 sing N N 43 LEU CA C sing N N 44 LEU CA CB sing N N 45 LEU CA HA sing N N 46 LEU C O doub N N 47 LEU C OXT sing N N 48 LEU CB CG sing N N 49 LEU CB HB2 sing N N 50 LEU CB HB3 sing N N 51 LEU CG CD1 sing N N 52 LEU CG CD2 sing N N 53 LEU CG HG sing N N 54 LEU CD1 HD11 sing N N 55 LEU CD1 HD12 sing N N 56 LEU CD1 HD13 sing N N 57 LEU CD2 HD21 sing N N 58 LEU CD2 HD22 sing N N 59 LEU CD2 HD23 sing N N 60 LEU OXT HXT sing N N 61 MET N CA sing N N 62 MET N H sing N N 63 MET N H2 sing N N 64 MET CA C sing N N 65 MET CA CB sing N N 66 MET CA HA sing N N 67 MET C O doub N N 68 MET C OXT sing N N 69 MET CB CG sing N N 70 MET CB HB2 sing N N 71 MET CB HB3 sing N N 72 MET CG SD sing N N 73 MET CG HG2 sing N N 74 MET CG HG3 sing N N 75 MET SD CE sing N N 76 MET CE HE1 sing N N 77 MET CE HE2 sing N N 78 MET CE HE3 sing N N 79 MET OXT HXT sing N N 80 SER N CA sing N N 81 SER N H sing N N 82 SER N H2 sing N N 83 SER CA C sing N N 84 SER CA CB sing N N 85 SER CA HA sing N N 86 SER C O doub N N 87 SER C OXT sing N N 88 SER CB OG sing N N 89 SER CB HB2 sing N N 90 SER CB HB3 sing N N 91 SER OG HG sing N N 92 SER OXT HXT sing N N 93 TRP N CA sing N N 94 TRP N H sing N N 95 TRP N H2 sing N N 96 TRP CA C sing N N 97 TRP CA CB sing N N 98 TRP CA HA sing N N 99 TRP C O doub N N 100 TRP C OXT sing N N 101 TRP CB CG sing N N 102 TRP CB HB2 sing N N 103 TRP CB HB3 sing N N 104 TRP CG CD1 doub Y N 105 TRP CG CD2 sing Y N 106 TRP CD1 NE1 sing Y N 107 TRP CD1 HD1 sing N N 108 TRP CD2 CE2 doub Y N 109 TRP CD2 CE3 sing Y N 110 TRP NE1 CE2 sing Y N 111 TRP NE1 HE1 sing N N 112 TRP CE2 CZ2 sing Y N 113 TRP CE3 CZ3 doub Y N 114 TRP CE3 HE3 sing N N 115 TRP CZ2 CH2 doub Y N 116 TRP CZ2 HZ2 sing N N 117 TRP CZ3 CH2 sing Y N 118 TRP CZ3 HZ3 sing N N 119 TRP CH2 HH2 sing N N 120 TRP OXT HXT sing N N 121 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 97.171 _em_3d_crystal_entity.angle_beta 92.895 _em_3d_crystal_entity.angle_gamma 105.943 _em_3d_crystal_entity.length_a 8.56 _em_3d_crystal_entity.length_b 9.60 _em_3d_crystal_entity.length_c 39.97 _em_3d_crystal_entity.space_group_name 'P 1' _em_3d_crystal_entity.space_group_num 1 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 ? ? ? 'sodium chloride' 1 2 ? ? ? 'potassium chloride' 1 3 ? ? ? 'dibasic sodium phosphate' 1 4 ? ? ? 'monobasic potassium phosphate' # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere 'air, sealed chamber' _em_crystal_formation.details 'Crystals were prepared by shaking peptide in microcentrifuge tube at 37 deg Celsius for 80 hours.' _em_crystal_formation.instrument 'microcentrifuge tube' _em_crystal_formation.lipid_mixture none _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature 310 _em_crystal_formation.time 4 _em_crystal_formation.time_unit DAY # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 1850 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 93.5 _em_diffraction_shell.high_resolution 1.5 _em_diffraction_shell.low_resolution 13.1675 _em_diffraction_shell.multiplicity 4.2 _em_diffraction_shell.num_structure_factors 1819 _em_diffraction_shell.phase_residual 55.72 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 93.5 _em_diffraction_stats.high_resolution 1.5 _em_diffraction_stats.num_intensities_measured 7695 _em_diffraction_stats.num_structure_factors 1819 _em_diffraction_stats.overall_phase_error 55.72 _em_diffraction_stats.overall_phase_residual 55.72 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 20.8 _em_diffraction_stats.r_sym 20.8 # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.01 _em_image_recording.average_exposure_time 2 _em_image_recording.details 'The detector was operated in rolling shutter mode with 2X2 pixel binning.' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images 100 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 891 # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? EM-Menu ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot 0.8.9 ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? BUSTER 2.10.3 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 24 _em_specimen.details crystal _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AG029430 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6CFH _atom_sites.fract_transf_matrix[1][1] 0.116822 _atom_sites.fract_transf_matrix[1][2] 0.033366 _atom_sites.fract_transf_matrix[1][3] 0.010829 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.108332 _atom_sites.fract_transf_matrix[2][3] 0.015808 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025316 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_