HEADER MEMBRANE PROTEIN/ANTAGONIST 13-APR-18 6D26 TITLE CRYSTAL STRUCTURE OF THE PROSTAGLANDIN D2 RECEPTOR CRTH2 WITH TITLE 2 FEVIPIPRANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN D2 RECEPTOR 2, ENDOLYSIN CHIMERA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CRTH2 (UNP RESIDUES 1-236), T4 LIGASE (UNP RESIDUES 2-12, COMPND 5 61-161), CRTH2 (UNP RESIDUES 238-339); COMPND 6 SYNONYM: CHEMOATTRACTANT RECEPTOR-HOMOLOGOUS MOLECULE EXPRESSED ON COMPND 7 TH2 CELLS,G-PROTEIN COUPLED RECEPTOR 44,LYSIS PROTEIN,LYSOZYME, COMPND 8 MURAMIDASE; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN, BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 GENE: PTGDR2, CRTH2, DL1R, GPR44, E, T4TP126; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS GPCR, MEMBRANE PROTEIN-ANTAGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG,D.YAO,K.DEEPAK,H.LIU,W.GONG,H.FAN,Z.WEI,C.ZHANG REVDAT 4 04-OCT-23 6D26 1 REMARK REVDAT 3 08-JAN-20 6D26 1 REMARK REVDAT 2 17-APR-19 6D26 1 JRNL REVDAT 1 03-OCT-18 6D26 0 JRNL AUTH L.WANG,D.YAO,R.N.V.K.DEEPAK,H.LIU,Q.XIAO,H.FAN,W.GONG,Z.WEI, JRNL AUTH 2 C.ZHANG JRNL TITL STRUCTURES OF THE HUMAN PGD2RECEPTOR CRTH2 REVEAL NOVEL JRNL TITL 2 MECHANISMS FOR LIGAND RECOGNITION. JRNL REF MOL. CELL V. 72 48 2018 JRNL REFN ISSN 1097-4164 JRNL PMID 30220562 JRNL DOI 10.1016/J.MOLCEL.2018.08.009 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 19525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3348 - 5.3436 0.89 2767 147 0.2196 0.2553 REMARK 3 2 5.3436 - 4.2455 0.91 2653 140 0.2266 0.2460 REMARK 3 3 4.2455 - 3.7100 0.96 2783 143 0.2351 0.2631 REMARK 3 4 3.7100 - 3.3713 0.98 2799 149 0.2682 0.2696 REMARK 3 5 3.3713 - 3.1300 0.96 2780 146 0.3095 0.3455 REMARK 3 6 3.1300 - 2.9456 0.92 2589 136 0.3329 0.3880 REMARK 3 7 2.9456 - 2.7982 0.77 2181 112 0.3589 0.4439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3715 REMARK 3 ANGLE : 0.594 5042 REMARK 3 CHIRALITY : 0.019 568 REMARK 3 PLANARITY : 0.003 629 REMARK 3 DIHEDRAL : 11.100 1331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 1241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0147 82.2726 292.5409 REMARK 3 T TENSOR REMARK 3 T11: 0.4561 T22: 0.5577 REMARK 3 T33: 0.5069 T12: -0.0188 REMARK 3 T13: -0.0205 T23: -0.0964 REMARK 3 L TENSOR REMARK 3 L11: 2.2941 L22: 1.8104 REMARK 3 L33: 4.3495 L12: -0.2713 REMARK 3 L13: -0.6671 L23: 0.3954 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: 0.5648 S13: -0.1754 REMARK 3 S21: -0.2451 S22: 0.0814 S23: -0.0850 REMARK 3 S31: 0.0602 S32: 0.1481 S33: -0.0170 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1242 THROUGH 2327 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2173 82.2904 318.7889 REMARK 3 T TENSOR REMARK 3 T11: 0.5107 T22: 0.4026 REMARK 3 T33: 0.5720 T12: 0.0655 REMARK 3 T13: -0.0559 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.7385 L22: 1.7285 REMARK 3 L33: 5.0665 L12: 0.5316 REMARK 3 L13: -1.6705 L23: -1.3274 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.0964 S13: 0.0307 REMARK 3 S21: 0.2181 S22: 0.1474 S23: 0.0996 REMARK 3 S31: -0.2918 S32: -0.3313 S33: -0.2070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6C1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.5, 100 MM AMMONIUM REMARK 280 SULFATE, 30% PEG400, 2% P400, 1 MM SUCCINIC ACID, LIPIDIC CUBIC REMARK 280 PHASE, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.22850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 133.25850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 133.25850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.22850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 VAL A 2328 REMARK 465 ASP A 2329 REMARK 465 ASP A 2330 REMARK 465 SER A 2331 REMARK 465 GLU A 2332 REMARK 465 LEU A 2333 REMARK 465 GLY A 2334 REMARK 465 GLY A 2335 REMARK 465 ALA A 2336 REMARK 465 GLY A 2337 REMARK 465 SER A 2338 REMARK 465 SER A 2339 REMARK 465 LEU A 2340 REMARK 465 GLU A 2341 REMARK 465 VAL A 2342 REMARK 465 LEU A 2343 REMARK 465 PHE A 2344 REMARK 465 GLN A 2345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 23 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 24 OG REMARK 470 TYR A 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A1247 CG1 CG2 CD1 REMARK 470 ASP A1262 CG OD1 OD2 REMARK 470 ARG A1281 CG CD NE CZ NH1 NH2 REMARK 470 LEU A2327 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 25 85.62 57.75 REMARK 500 CYS A 59 -38.10 -130.07 REMARK 500 ASN A 190 70.52 49.44 REMARK 500 PHE A 215 -67.04 -153.82 REMARK 500 ASN A1246 42.02 -95.72 REMARK 500 ASP A1271 91.99 -63.38 REMARK 500 ASN A1317 35.27 -82.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FSY A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 2411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 2412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 2413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 2414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 2415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 2416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 2418 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D27 RELATED DB: PDB DBREF 6D26 A 1 236 UNP Q9Y5Y4 PD2R2_HUMAN 1 236 DBREF 6D26 A 1246 1256 UNP D9IEF7 D9IEF7_BPT4 2 12 DBREF 6D26 A 1262 1362 UNP D9IEF7 D9IEF7_BPT4 61 161 DBREF 6D26 A 2238 2339 UNP Q9Y5Y4 PD2R2_HUMAN 238 339 SEQADV 6D26 GLY A 0 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D26 ALA A 25 UNP Q9Y5Y4 ASN 25 ENGINEERED MUTATION SEQADV 6D26 ALA A 204 UNP Q9Y5Y4 VAL 204 VARIANT SEQADV 6D26 ALA A 1238 UNP Q9Y5Y4 INSERTION SEQADV 6D26 ASP A 1239 UNP Q9Y5Y4 INSERTION SEQADV 6D26 LEU A 1240 UNP Q9Y5Y4 INSERTION SEQADV 6D26 GLY A 1241 UNP Q9Y5Y4 INSERTION SEQADV 6D26 LEU A 1242 UNP Q9Y5Y4 INSERTION SEQADV 6D26 GLN A 1243 UNP Q9Y5Y4 INSERTION SEQADV 6D26 HIS A 1244 UNP Q9Y5Y4 INSERTION SEQADV 6D26 ARG A 1245 UNP Q9Y5Y4 INSERTION SEQADV 6D26 GLY A 1257 UNP D9IEF7 INSERTION SEQADV 6D26 GLY A 1258 UNP D9IEF7 INSERTION SEQADV 6D26 SER A 1259 UNP D9IEF7 INSERTION SEQADV 6D26 GLY A 1260 UNP D9IEF7 INSERTION SEQADV 6D26 GLY A 1261 UNP D9IEF7 INSERTION SEQADV 6D26 ALA A 1298 UNP D9IEF7 CYS 97 ENGINEERED MUTATION SEQADV 6D26 LEU A 2340 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D26 GLU A 2341 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D26 VAL A 2342 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D26 LEU A 2343 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D26 PHE A 2344 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D26 GLN A 2345 UNP Q9Y5Y4 EXPRESSION TAG SEQRES 1 A 470 GLY MET SER ALA ASN ALA THR LEU LYS PRO LEU CYS PRO SEQRES 2 A 470 ILE LEU GLU GLN MET SER ARG LEU GLN SER HIS SER ALA SEQRES 3 A 470 THR SER ILE ARG TYR ILE ASP HIS ALA ALA VAL LEU LEU SEQRES 4 A 470 HIS GLY LEU ALA SER LEU LEU GLY LEU VAL GLU ASN GLY SEQRES 5 A 470 VAL ILE LEU PHE VAL VAL GLY CYS ARG MET ARG GLN THR SEQRES 6 A 470 VAL VAL THR THR TRP VAL LEU HIS LEU ALA LEU SER ASP SEQRES 7 A 470 LEU LEU ALA SER ALA SER LEU PRO PHE PHE THR TYR PHE SEQRES 8 A 470 LEU ALA VAL GLY HIS SER TRP GLU LEU GLY THR THR PHE SEQRES 9 A 470 CYS LYS LEU HIS SER SER ILE PHE PHE LEU ASN MET PHE SEQRES 10 A 470 ALA SER GLY PHE LEU LEU SER ALA ILE SER LEU ASP ARG SEQRES 11 A 470 CYS LEU GLN VAL VAL ARG PRO VAL TRP ALA GLN ASN HIS SEQRES 12 A 470 ARG THR VAL ALA ALA ALA HIS LYS VAL CYS LEU VAL LEU SEQRES 13 A 470 TRP ALA LEU ALA VAL LEU ASN THR VAL PRO TYR PHE VAL SEQRES 14 A 470 PHE ARG ASP THR ILE SER ARG LEU ASP GLY ARG ILE MET SEQRES 15 A 470 CYS TYR TYR ASN VAL LEU LEU LEU ASN PRO GLY PRO ASP SEQRES 16 A 470 ARG ASP ALA THR CYS ASN SER ARG GLN ALA ALA LEU ALA SEQRES 17 A 470 VAL SER LYS PHE LEU LEU ALA PHE LEU VAL PRO LEU ALA SEQRES 18 A 470 ILE ILE ALA SER SER HIS ALA ALA VAL SER LEU ARG LEU SEQRES 19 A 470 GLN HIS ARG ALA ASP LEU GLY LEU GLN HIS ARG ASN ILE SEQRES 20 A 470 PHE GLU MET LEU ARG ILE ASP GLU GLY GLY GLY SER GLY SEQRES 21 A 470 GLY ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 22 A 470 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 23 A 470 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 24 A 470 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 25 A 470 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 26 A 470 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 27 A 470 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 28 A 470 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR ARG ARG SEQRES 29 A 470 ARG PRO GLY ARG PHE VAL ARG LEU VAL ALA ALA VAL VAL SEQRES 30 A 470 ALA ALA PHE ALA LEU CYS TRP GLY PRO TYR HIS VAL PHE SEQRES 31 A 470 SER LEU LEU GLU ALA ARG ALA HIS ALA ASN PRO GLY LEU SEQRES 32 A 470 ARG PRO LEU VAL TRP ARG GLY LEU PRO PHE VAL THR SER SEQRES 33 A 470 LEU ALA PHE PHE ASN SER VAL ALA ASN PRO VAL LEU TYR SEQRES 34 A 470 VAL LEU THR YCM PRO ASP MET LEU ARG LYS LEU ARG ARG SEQRES 35 A 470 SER LEU ARG THR VAL LEU GLU SER VAL LEU VAL ASP ASP SEQRES 36 A 470 SER GLU LEU GLY GLY ALA GLY SER SER LEU GLU VAL LEU SEQRES 37 A 470 PHE GLN MODRES 6D26 YCM A 2308 CYS MODIFIED RESIDUE HET YCM A2308 10 HET FSY A2401 29 HET SO4 A2402 5 HET SO4 A2403 5 HET SO4 A2404 5 HET SO4 A2405 5 HET SO4 A2406 5 HET SO4 A2407 5 HET SO4 A2408 5 HET SO4 A2409 5 HET SO4 A2410 5 HET SIN A2411 8 HET SIN A2412 8 HET SIN A2413 8 HET SIN A2414 8 HET SIN A2415 8 HET PGE A2416 10 HET OLA A2417 20 HET PGO A2418 5 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM FSY FEVIPIPRANT HETNAM SO4 SULFATE ION HETNAM SIN SUCCINIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM OLA OLEIC ACID HETNAM PGO S-1,2-PROPANEDIOL HETSYN YCM CYSTEINE-S-ACETAMIDE HETSYN FSY (2-METHYL-1-{[4-(METHYLSULFONYL)-2-(TRIFLUOROMETHYL) HETSYN 2 FSY PHENYL]METHYL}-1H-PYRROLO[2,3-B]PYRIDIN-3-YL)ACETIC HETSYN 3 FSY ACID FORMUL 1 YCM C5 H10 N2 O3 S FORMUL 2 FSY C19 H17 F3 N2 O4 S FORMUL 3 SO4 9(O4 S 2-) FORMUL 12 SIN 5(C4 H6 O4) FORMUL 17 PGE C6 H14 O4 FORMUL 18 OLA C18 H34 O2 FORMUL 19 PGO C3 H8 O2 FORMUL 20 HOH *3(H2 O) HELIX 1 AA1 CYS A 11 SER A 18 1 8 HELIX 2 AA2 ASP A 32 ARG A 60 1 29 HELIX 3 AA3 THR A 64 VAL A 93 1 30 HELIX 4 AA4 THR A 101 ARG A 135 1 35 HELIX 5 AA5 ARG A 135 ARG A 143 1 9 HELIX 6 AA6 THR A 144 ASN A 162 1 19 HELIX 7 AA7 THR A 163 PHE A 169 1 7 HELIX 8 AA8 VAL A 186 LEU A 189 5 4 HELIX 9 AA9 ASP A 194 ALA A 214 1 21 HELIX 10 AB1 PHE A 215 LEU A 1242 1 27 HELIX 11 AB2 GLN A 1243 ILE A 1247 5 5 HELIX 12 AB3 ILE A 1253 GLY A 1257 5 5 HELIX 13 AB4 ASP A 1271 ASN A 1282 1 12 HELIX 14 AB5 LEU A 1285 SER A 1291 1 7 HELIX 15 AB6 ASP A 1293 GLY A 1308 1 16 HELIX 16 AB7 GLY A 1308 ALA A 1313 1 6 HELIX 17 AB8 PHE A 1315 GLN A 1324 1 10 HELIX 18 AB9 ARG A 1326 ALA A 1335 1 10 HELIX 19 AC1 SER A 1337 THR A 1343 1 7 HELIX 20 AC2 THR A 1343 GLY A 1357 1 15 HELIX 21 AC3 PHE A 2244 TRP A 2259 1 16 HELIX 22 AC4 TRP A 2259 ALA A 2272 1 14 HELIX 23 AC5 ASN A 2275 GLY A 2277 5 3 HELIX 24 AC6 LEU A 2278 TRP A 2283 1 6 HELIX 25 AC7 GLY A 2285 PHE A 2295 1 11 HELIX 26 AC8 PHE A 2295 YCM A 2308 1 14 HELIX 27 AC9 YCM A 2308 GLU A 2324 1 17 SHEET 1 AA1 2 ARG A 170 SER A 174 0 SHEET 2 AA1 2 ILE A 180 TYR A 184 -1 O MET A 181 N ILE A 173 SSBOND 1 CYS A 11 CYS A 199 1555 1555 2.03 SSBOND 2 CYS A 104 CYS A 182 1555 1555 2.03 LINK C THR A2307 N YCM A2308 1555 1555 1.33 LINK C YCM A2308 N PRO A2309 1555 1555 1.34 SITE 1 AC1 16 MET A 17 PHE A 87 PHE A 90 HIS A 95 SITE 2 AC1 16 PHE A 111 PHE A 112 ARG A 170 ARG A 175 SITE 3 AC1 16 MET A 181 CYS A 182 TYR A 183 TYR A 184 SITE 4 AC1 16 TYR A2262 TRP A2283 PRO A2287 THR A2290 SITE 1 AC2 8 GLN A 140 MET A1250 LEU A1251 ARG A1349 SITE 2 AC2 8 TRP A1359 ALA A1361 TYR A1362 ARG A2238 SITE 1 AC3 7 GLY A1314 PHE A1315 THR A1316 ASN A1317 SITE 2 AC3 7 SER A1318 ASN A1333 ARG A2239 SITE 1 AC4 9 ARG A1320 GLN A1324 ARG A1326 GLY A2242 SITE 2 AC4 9 ARG A2243 PHE A2244 VAL A2245 ARG A2246 SITE 3 AC4 9 YCM A2308 SITE 1 AC5 3 MET A 61 ARG A 62 LYS A2314 SITE 1 AC6 7 THR A 64 VAL A 65 VAL A 66 GLN A 132 SITE 2 AC6 7 ARG A 143 ARG A2240 ARG A2243 SITE 1 AC7 6 THR A 144 VAL A 145 THR A1343 PRO A1344 SITE 2 AC7 6 ASN A1345 ARG A1346 SITE 1 AC8 4 ARG A 135 GLY A1256 GLY A1257 LYS A1266 SITE 1 AC9 2 ALA A1274 ARG A1277 SITE 1 AD1 1 ARG A1297 SITE 1 AD2 3 PHE A 120 LEU A 127 LEU A 155 SITE 1 AD3 5 ARG A1320 ARG A2246 YCM A2308 PRO A2309 SITE 2 AD3 5 ASP A2310 SITE 1 AD4 2 ARG A 175 ARG A 179 SITE 1 AD5 4 HIS A 142 THR A 144 ARG A1346 LEU A2327 SITE 1 AD6 2 SER A1337 ARG A1338 SITE 1 AD7 3 GLU A1249 MET A1250 LEU A1251 SITE 1 AD8 6 LEU A 47 GLY A 51 PHE A 55 GLY A 58 SITE 2 AD8 6 CYS A 59 HIS A 149 SITE 1 AD9 1 ASP A 128 CRYST1 50.457 61.710 266.517 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019819 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003752 0.00000