data_6D2U # _entry.id 6D2U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6D2U WWPDB D_1000233920 BMRB 30452 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA' _pdbx_database_related.db_id 30452 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6D2U _pdbx_database_status.recvd_initial_deposition_date 2018-04-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shortridge, M.D.' 1 0000-0003-2825-6836 'Varani, G.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 1523 _citation.page_last 1531 _citation.title 'An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky1197 _citation.pdbx_database_id_PubMed 30481318 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shortridge, M.D.' 1 ? primary 'Wille, P.T.' 2 ? primary 'Jones, A.N.' 3 ? primary 'Davidson, A.' 4 ? primary 'Bogdanovic, J.' 5 ? primary 'Arts, E.' 6 ? primary 'Karn, J.' 7 ? primary 'Robinson, J.A.' 8 ? primary 'Varani, G.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO 1697.087 1 ? ? ? ? 2 polymer man 'RNA (29-MER)' 9307.555 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(DAB)VRTRKGRRI(4J5)I(DPR)P' AVRTRKGRRIXIPP A ? 2 polyribonucleotide no no GGCAGAUCUGAGCCUGGGAGCUCUCUGCC GGCAGAUCUGAGCCUGGGAGCUCUCUGCC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DAB n 1 2 VAL n 1 3 ARG n 1 4 THR n 1 5 ARG n 1 6 LYS n 1 7 GLY n 1 8 ARG n 1 9 ARG n 1 10 ILE n 1 11 4J5 n 1 12 ILE n 1 13 DPR n 1 14 PRO n 2 1 G n 2 2 G n 2 3 C n 2 4 A n 2 5 G n 2 6 A n 2 7 U n 2 8 C n 2 9 U n 2 10 G n 2 11 A n 2 12 G n 2 13 C n 2 14 C n 2 15 U n 2 16 G n 2 17 G n 2 18 G n 2 19 A n 2 20 G n 2 21 C n 2 22 U n 2 23 C n 2 24 U n 2 25 C n 2 26 U n 2 27 G n 2 28 C n 2 29 C n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 14 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 29 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6D2U 6D2U ? 1 ? 1 2 PDB 6D2U 6D2U ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6D2U A 1 ? 14 ? 6D2U 1 ? 14 ? 1 14 2 2 6D2U B 1 ? 29 ? 6D2U 17 ? 45 ? 17 45 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4J5 'L-peptide linking' n 'amino{[(3S)-3-amino-3-carboxypropyl]amino}methaniminium' ? 'C5 H13 N4 O2 1' 161.182 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DAB 'L-peptide linking' n '2,4-DIAMINOBUTYRIC ACID' ? 'C4 H10 N2 O2' 118.134 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 3 '2D 1H-15N HSQC' 3 isotropic 2 2 2 '2D 1H-1H TOCSY' 3 isotropic 3 1 1 '2D 1H-1H NOESY' 3 isotropic 4 2 2 '2D 1H-1H NOESY' 3 isotropic 5 2 4 '2D 1H-13C HSQC' 3 isotropic 6 1 3 '3D 1H-15N NOESY' 3 isotropic 7 2 4 '3D 1H-13C NOESY' 3 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 277 atm 1 6.5 '10 mM NaCl, 20mM Na Phosphate' 'Low temp sample conditions to record exchangeable proton information (imino, amino)' ? mM low_temp ? pH ? ? K 2 303 atm 1 6.5 '10 mM NaCl, 20mM Na Phosphate' 'high temp sample conditions to record difference in exchangeable proton information (imino, amino)' ? mM high_temp ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;1.7 mM DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO, 1.2 mM RNA (29-MER), 0.01 mM EDTA, 20 mM potassium phosphate, 10 mM sodium chloride, 95% H2O/5% D2O ; '95% H2O/5% D2O' '1H Peptide/1H RNA H2O' solution 'Sample conditions to record exchangeable proton distance information (imino, amino). 300uL volume in shigemi nmr tube.' 2 ;1.7 mM DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO, 1.2 mM RNA (29-MER), 0.01 mM EDTA, 20 mM potassium phosphate, 10 mM sodium chloride, 100% D2O ; '100% D2O' '1H Peptide/1H RNA D2O' solution ;Sample conditions to record non-exchangeable proton distance information. Same sample as id#1 lyophylized down and redissolved in 100% D2O ; 3 ;1.5 mM DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO, 1.0 mM [U-99% 13C; U-99% 15N] RNA (29-MER), 0.01 mM EDTA, 20 mM potassium phosphate, 10 mM sodium chloride, 95% H2O/5% D2O ; '95% H2O/5% D2O' '1H Peptide/ 13C/15N RNA H2O' solution 'Sample conditions to record exchangeable proton distance information (imino, amino). 300uL volume in shigemi nmr tube.' 4 ;1.5 mM DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO, 1.0 mM [U-99% 13C; U-99% 15N] RNA (29-MER), 0.01 mM EDTA, 20 mM potassium phosphate, 10 mM sodium chloride, 100% D2O ; '100% D2O' '1H Peptide/ 13C/15N RNA D2O' solution ;Sample conditions to record non-exchangeable proton distance information. Same sample as id#3 lyophylized down and redissolved in 100% D2O ; # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 DRX ? Bruker 500 'TCI cryoprobe' 2 'AVANCE II' ? Bruker 600 'TCI cryoprobe' 3 'AVANCE III' ? Bruker 800 'TCI cryoprobe' # _pdbx_nmr_refine.entry_id 6D2U _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6D2U _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6D2U _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6D2U _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6D2U _struct.title 'Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA' _struct.pdbx_descriptor 'DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO/RNA Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6D2U _struct_keywords.text 'Macrocycle inhibitor, complex, HIV-1 TAR, Tat, P-TEFb, RNA, Peptide-RNA complex' _struct_keywords.pdbx_keywords Peptide/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A DAB 1 N ? ? ? 1_555 A PRO 14 C ? ? A DAB 1 A PRO 14 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale both ? A DAB 1 C ? ? ? 1_555 A VAL 2 N ? ? A DAB 1 A VAL 2 1_555 ? ? ? ? ? ? ? 1.341 ? covale3 covale both ? A ILE 10 C ? ? ? 1_555 A 4J5 11 N ? ? A ILE 10 A 4J5 11 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale both ? A 4J5 11 C ? ? ? 1_555 A ILE 12 N ? ? A 4J5 11 A ILE 12 1_555 ? ? ? ? ? ? ? 1.324 ? covale5 covale both ? A ILE 12 C ? ? ? 1_555 A DPR 13 N ? ? A ILE 12 A DPR 13 1_555 ? ? ? ? ? ? ? 1.319 ? covale6 covale both ? A DPR 13 C ? ? ? 1_555 A PRO 14 N ? ? A DPR 13 A PRO 14 1_555 ? ? ? ? ? ? ? 1.327 ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 29 N3 ? ? B G 17 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 29 O2 ? ? B G 17 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 29 N4 ? ? B G 17 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 28 N3 ? ? B G 18 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 28 O2 ? ? B G 18 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 28 N4 ? ? B G 18 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 27 N1 ? ? B C 19 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 27 O6 ? ? B C 19 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 27 N2 ? ? B C 19 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 26 N3 ? ? B A 20 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 26 O4 ? ? B A 20 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 25 N3 ? ? B G 21 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 25 O2 ? ? B G 21 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 25 N4 ? ? B G 21 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B A 6 N1 ? ? ? 1_555 B U 24 N3 ? ? B A 22 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B A 6 N6 ? ? ? 1_555 B U 24 O4 ? ? B A 22 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 11 N7 ? ? B U 23 B A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog18 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 11 N6 ? ? B U 23 B A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog19 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 23 N3 ? ? B G 26 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 23 O2 ? ? B G 26 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 23 N4 ? ? B G 26 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B A 11 N1 ? ? ? 1_555 B U 22 N3 ? ? B A 27 B U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B A 11 N6 ? ? ? 1_555 B U 22 O4 ? ? B A 27 B U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 28 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 28 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 28 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 20 N1 ? ? B C 29 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 20 O6 ? ? B C 29 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 20 N2 ? ? B C 29 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 30 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 30 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 30 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 2 ? ARG A 5 ? VAL A 2 ARG A 5 AA1 2 ARG A 8 ? 4J5 A 11 ? ARG A 8 4J5 A 11 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ARG _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 5 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 5 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 8 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 8 # _atom_sites.entry_id 6D2U _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DAB 1 1 1 DAB DAB A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 4J5 11 11 11 4J5 NOR A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 DPR 13 13 13 DPR DPR A . n A 1 14 PRO 14 14 14 PRO PRO A . n B 2 1 G 1 17 17 G G B . n B 2 2 G 2 18 18 G G B . n B 2 3 C 3 19 19 C C B . n B 2 4 A 4 20 20 A A B . n B 2 5 G 5 21 21 G G B . n B 2 6 A 6 22 22 A A B . n B 2 7 U 7 23 23 U U B . n B 2 8 C 8 24 24 C C B . n B 2 9 U 9 25 25 U U B . n B 2 10 G 10 26 26 G G B . n B 2 11 A 11 27 27 A A B . n B 2 12 G 12 28 28 G G B . n B 2 13 C 13 29 29 C C B . n B 2 14 C 14 30 30 C C B . n B 2 15 U 15 31 31 U U B . n B 2 16 G 16 32 32 G G B . n B 2 17 G 17 33 33 G G B . n B 2 18 G 18 34 34 G G B . n B 2 19 A 19 35 35 A A B . n B 2 20 G 20 36 36 G G B . n B 2 21 C 21 37 37 C C B . n B 2 22 U 22 38 38 U U B . n B 2 23 C 23 39 39 C C B . n B 2 24 U 24 40 40 U U B . n B 2 25 C 25 41 41 C C B . n B 2 26 U 26 42 42 U U B . n B 2 27 G 27 43 43 G G B . n B 2 28 C 28 44 44 C C B . n B 2 29 C 29 45 45 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-12-12 2 'Structure model' 1 1 2019-07-03 3 'Structure model' 1 2 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' pdbx_nmr_software 3 2 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 2 'Structure model' '_pdbx_nmr_software.name' 6 2 'Structure model' '_pdbx_nmr_spectrometer.model' 7 3 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO 1.7 ? mM 'natural abundance' 1 'RNA (29-MER)' 1.2 ? mM 'natural abundance' 1 EDTA 0.01 ? mM 'natural abundance' 1 'potassium phosphate' 20 ? mM 'natural abundance' 1 'sodium chloride' 10 ? mM 'natural abundance' 2 DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO 1.7 ? mM 'natural abundance' 2 'RNA (29-MER)' 1.2 ? mM 'natural abundance' 2 EDTA 0.01 ? mM 'natural abundance' 2 'potassium phosphate' 20 ? mM 'natural abundance' 2 'sodium chloride' 10 ? mM 'natural abundance' 3 DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO 1.5 ? mM 'natural abundance' 3 'RNA (29-MER)' 1.0 ? mM '[U-99% 13C; U-99% 15N]' 3 EDTA 0.01 ? mM 'natural abundance' 3 'potassium phosphate' 20 ? mM 'natural abundance' 3 'sodium chloride' 10 ? mM 'natural abundance' 4 DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO 1.5 ? mM 'natural abundance' 4 'RNA (29-MER)' 1.0 ? mM '[U-99% 13C; U-99% 15N]' 4 EDTA 0.01 ? mM 'natural abundance' 4 'potassium phosphate' 20 ? mM 'natural abundance' 4 'sodium chloride' 10 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" B U 23 ? ? "H1'" B U 25 ? ? 1.52 2 2 "HO2'" B C 30 ? ? "O4'" B U 31 ? ? 1.48 3 3 "HO2'" B G 33 ? ? "O5'" B G 34 ? ? 1.26 4 3 "H5''" B C 24 ? ? "O4'" B U 25 ? ? 1.58 5 3 "O3'" B G 33 ? ? H22 B G 34 ? ? 1.58 6 3 "HO2'" B U 25 ? ? "O5'" B G 26 ? ? 1.60 7 4 "H5''" B G 34 ? ? "O4'" B G 36 ? ? 1.51 8 4 "HO2'" B C 24 ? ? OP1 B U 25 ? ? 1.53 9 4 "H4'" B U 31 ? ? "O4'" B G 32 ? ? 1.54 10 5 "O2'" B U 23 ? ? "H1'" B U 25 ? ? 1.55 11 6 "O3'" B G 33 ? ? H22 B G 34 ? ? 1.33 12 6 "HO2'" B G 32 ? ? "O5'" B G 33 ? ? 1.34 13 6 "O2'" B G 32 ? ? "H3'" B G 33 ? ? 1.57 14 7 "O2'" B G 33 ? ? "H3'" B G 34 ? ? 1.46 15 7 "H5''" B C 24 ? ? "O4'" B U 25 ? ? 1.49 16 7 "O3'" B G 33 ? ? H22 B G 34 ? ? 1.55 17 8 HH12 A ARG 8 ? ? H42 B C 30 ? ? 1.25 18 8 HH21 A ARG 8 ? ? H22 B G 32 ? ? 1.28 19 8 HH22 A ARG 8 ? ? H42 B C 30 ? ? 1.28 20 8 "O2'" B C 30 ? ? "H5'" B U 31 ? ? 1.47 21 8 H6 B U 25 ? ? OP2 B A 27 ? ? 1.58 22 9 "O2'" B G 32 ? ? "H3'" B G 33 ? ? 1.53 23 10 "HO2'" B G 33 ? ? "O5'" B G 34 ? ? 1.49 24 10 "O2'" B U 23 ? ? "H1'" B U 25 ? ? 1.54 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 8 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 12 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DPR _pdbx_validate_rmsd_angle.auth_seq_id_2 13 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DPR _pdbx_validate_rmsd_angle.auth_seq_id_3 13 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 114.12 _pdbx_validate_rmsd_angle.angle_target_value 128.40 _pdbx_validate_rmsd_angle.angle_deviation -14.28 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 6 ? ? 9.23 59.96 2 1 DPR A 13 ? ? 47.41 -97.78 3 2 LYS A 6 ? ? 39.00 55.50 4 2 DPR A 13 ? ? 49.71 -108.00 5 3 LYS A 6 ? ? 1.95 71.12 6 3 DPR A 13 ? ? 48.86 -107.46 7 4 LYS A 6 ? ? -39.89 78.03 8 4 ILE A 12 ? ? -109.54 78.76 9 4 DPR A 13 ? ? 51.39 -106.79 10 5 LYS A 6 ? ? -48.48 76.92 11 5 ILE A 10 ? ? -129.94 -168.63 12 5 DPR A 13 ? ? 25.33 -83.75 13 6 LYS A 6 ? ? 13.03 73.81 14 6 DPR A 13 ? ? 46.19 -105.16 15 7 LYS A 6 ? ? -49.17 75.95 16 7 DPR A 13 ? ? 45.20 -104.09 17 8 LYS A 6 ? ? 29.29 78.76 18 8 DPR A 13 ? ? 49.13 -107.31 19 9 LYS A 6 ? ? -43.24 81.51 20 9 DPR A 13 ? ? 46.55 -106.23 21 10 LYS A 6 ? ? 33.79 73.03 22 10 ILE A 12 ? ? -109.54 79.61 23 10 DPR A 13 ? ? 49.85 -106.02 # _ndb_struct_conf_na.entry_id 6D2U _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 29 1_555 -0.156 -0.178 -0.084 -1.995 -3.265 -1.693 1 B_G17:C45_B B 17 ? B 45 ? 19 1 1 B G 2 1_555 B C 28 1_555 -0.121 -0.196 -0.239 -1.664 -11.585 -0.530 2 B_G18:C44_B B 18 ? B 44 ? 19 1 1 B C 3 1_555 B G 27 1_555 0.129 -0.214 -0.294 -0.005 -11.225 -0.007 3 B_C19:G43_B B 19 ? B 43 ? 19 1 1 B A 4 1_555 B U 26 1_555 0.213 -0.180 0.131 -4.751 -10.525 1.987 4 B_A20:U42_B B 20 ? B 42 ? 20 1 1 B G 5 1_555 B C 25 1_555 -0.114 -0.203 -0.019 -5.592 -11.856 -2.284 5 B_G21:C41_B B 21 ? B 41 ? 19 1 1 B A 6 1_555 B U 24 1_555 0.339 -0.154 0.227 -7.909 -1.004 -1.373 6 B_A22:U40_B B 22 ? B 40 ? 20 1 1 B G 10 1_555 B C 23 1_555 -0.061 -0.159 -0.154 -27.790 14.177 2.616 7 B_G26:C39_B B 26 ? B 39 ? 19 1 1 B A 11 1_555 B U 22 1_555 -0.221 -0.279 0.180 -8.544 -0.389 1.129 8 B_A27:U38_B B 27 ? B 38 ? 20 1 1 B G 12 1_555 B C 21 1_555 -0.137 -0.218 -0.152 1.981 -8.235 -2.344 9 B_G28:C37_B B 28 ? B 37 ? 19 1 1 B C 13 1_555 B G 20 1_555 0.127 -0.193 -0.105 -2.142 -8.439 -2.042 10 B_C29:G36_B B 29 ? B 36 ? 19 1 1 B C 14 1_555 B G 18 1_555 -0.112 -0.766 1.625 -3.661 -14.677 -12.651 11 B_C30:G34_B B 30 ? B 34 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 29 1_555 B G 2 1_555 B C 28 1_555 0.063 -1.722 3.366 0.997 8.131 30.003 -4.714 0.065 2.814 15.348 -1.882 31.077 1 BB_G17G18:C44C45_BB B 17 ? B 45 ? B 18 ? B 44 ? 1 B G 2 1_555 B C 28 1_555 B C 3 1_555 B G 27 1_555 0.068 -1.511 3.275 0.238 6.494 32.003 -3.767 -0.081 2.921 11.629 -0.427 32.639 2 BB_G18C19:G43C44_BB B 18 ? B 44 ? B 19 ? B 43 ? 1 B C 3 1_555 B G 27 1_555 B A 4 1_555 B U 26 1_555 0.141 -1.609 3.403 -1.330 10.537 30.849 -4.633 -0.474 2.713 19.111 2.412 32.584 3 BB_C19A20:U42G43_BB B 19 ? B 43 ? B 20 ? B 42 ? 1 B A 4 1_555 B U 26 1_555 B G 5 1_555 B C 25 1_555 -0.264 -1.628 3.231 0.697 10.765 29.203 -4.897 0.612 2.482 20.490 -1.326 31.091 4 BB_A20G21:C41U42_BB B 20 ? B 42 ? B 21 ? B 41 ? 1 B G 5 1_555 B C 25 1_555 B A 6 1_555 B U 24 1_555 0.270 -1.602 3.570 -1.913 9.734 31.716 -4.469 -0.800 2.943 17.290 3.398 33.193 5 BB_G21A22:U40C41_BB B 21 ? B 41 ? B 22 ? B 40 ? 1 B A 6 1_555 B U 24 1_555 B G 10 1_555 B C 23 1_555 -2.396 -1.803 3.809 -9.509 -0.444 45.744 -2.229 2.039 4.215 -0.564 12.078 46.672 6 BB_A22G26:C39U40_BB B 22 ? B 40 ? B 26 ? B 39 ? 1 B G 10 1_555 B C 23 1_555 B A 11 1_555 B U 22 1_555 -0.462 -2.241 3.171 4.134 -5.327 25.304 -3.462 2.174 3.445 -11.893 -9.229 26.173 7 BB_G26A27:U38C39_BB B 26 ? B 39 ? B 27 ? B 38 ? 1 B A 11 1_555 B U 22 1_555 B G 12 1_555 B C 21 1_555 -0.146 -1.756 2.738 2.044 13.815 27.847 -5.169 0.552 1.684 26.685 -3.948 31.090 8 BB_A27G28:C37U38_BB B 27 ? B 38 ? B 28 ? B 37 ? 1 B G 12 1_555 B C 21 1_555 B C 13 1_555 B G 20 1_555 0.312 -1.839 3.663 0.462 6.018 31.657 -4.462 -0.475 3.271 10.908 -0.837 32.213 9 BB_G28C29:G36C37_BB B 28 ? B 37 ? B 29 ? B 36 ? 1 B C 13 1_555 B G 20 1_555 B C 14 1_555 B G 18 1_555 0.350 -1.466 3.961 -10.944 5.216 38.471 -2.821 -1.959 3.517 7.686 16.127 40.267 10 BB_C29C30:G34G36_BB B 29 ? B 36 ? B 30 ? B 34 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 5R01GM110569 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #