HEADER HYDROLASE 18-APR-18 6D4O TITLE EUBACTERIUM ELIGENS BETA-GLUCURONIDASE BOUND TO AN AMOXAPINE- TITLE 2 GLUCURONIDE CONJUGATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.31; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: [EUBACTERIUM] ELIGENS; SOURCE 3 ORGANISM_TAXID: 39485; SOURCE 4 GENE: UIDA, ERS852490_00568, ERS852492_02599; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.PELLOCK,W.G.WALTON,M.R.REDINBO REVDAT 4 13-MAR-24 6D4O 1 REMARK REVDAT 3 04-DEC-19 6D4O 1 REMARK REVDAT 2 22-AUG-18 6D4O 1 JRNL REVDAT 1 25-JUL-18 6D4O 0 JRNL AUTH S.J.PELLOCK,B.C.CREEKMORE,W.G.WALTON,N.MEHTA,K.A.BIERNAT, JRNL AUTH 2 A.P.CESMAT,Y.ARIYARATHNA,Z.D.DUNN,B.LI,J.JIN,L.I.JAMES, JRNL AUTH 3 M.R.REDINBO JRNL TITL GUT MICROBIAL BETA-GLUCURONIDASE INHIBITION VIA CATALYTIC JRNL TITL 2 CYCLE INTERCEPTION. JRNL REF ACS CENT SCI V. 4 868 2018 JRNL REFN ESSN 2374-7943 JRNL PMID 30062115 JRNL DOI 10.1021/ACSCENTSCI.8B00239 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4534 - 6.9610 1.00 2106 156 0.1969 0.2374 REMARK 3 2 6.9610 - 5.5371 1.00 1988 146 0.1926 0.2318 REMARK 3 3 5.5371 - 4.8407 1.00 1961 145 0.1703 0.1916 REMARK 3 4 4.8407 - 4.3997 1.00 1935 144 0.1597 0.2199 REMARK 3 5 4.3997 - 4.0852 1.00 1914 141 0.1760 0.2194 REMARK 3 6 4.0852 - 3.8449 1.00 1936 144 0.1816 0.2344 REMARK 3 7 3.8449 - 3.6527 1.00 1905 141 0.2132 0.2608 REMARK 3 8 3.6527 - 3.4940 1.00 1916 142 0.2142 0.2671 REMARK 3 9 3.4940 - 3.3597 1.00 1897 140 0.2287 0.2813 REMARK 3 10 3.3597 - 3.2439 1.00 1904 141 0.2396 0.2768 REMARK 3 11 3.2439 - 3.1426 1.00 1890 139 0.2244 0.2793 REMARK 3 12 3.1426 - 3.0529 1.00 1896 140 0.2328 0.2706 REMARK 3 13 3.0529 - 2.9726 1.00 1882 140 0.2287 0.2929 REMARK 3 14 2.9726 - 2.9001 1.00 1910 141 0.2771 0.3170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4897 REMARK 3 ANGLE : 1.293 6644 REMARK 3 CHIRALITY : 0.054 700 REMARK 3 PLANARITY : 0.006 864 REMARK 3 DIHEDRAL : 6.296 2871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M BIS-TRIS PH 6.5 45% PEG 400, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.98033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.96067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.98033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.96067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.98033 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 89.96067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.98033 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 89.96067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.97700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -155.84474 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -44.98033 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 89.97700 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -155.84474 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -44.98033 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 MET A 154 REMARK 465 GLY A 155 REMARK 465 GLY A 156 REMARK 465 MET A 157 REMARK 465 GLY A 158 REMARK 465 ALA A 159 REMARK 465 GLY A 160 REMARK 465 ALA A 161 REMARK 465 SER A 162 REMARK 465 ASP A 163 REMARK 465 LYS A 164 REMARK 465 ILE A 219 REMARK 465 LYS A 220 REMARK 465 GLY A 221 REMARK 465 LYS A 222 REMARK 465 ASP A 223 REMARK 465 TYR A 224 REMARK 465 ASN A 225 REMARK 465 ASN A 226 REMARK 465 ILE A 227 REMARK 465 THR A 228 REMARK 465 CYS A 229 REMARK 465 LYS A 230 REMARK 465 LYS A 611 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA GLY A 377 NH1 ARG A 384 1.79 REMARK 500 O ALA A 88 O HOH A 801 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 12 87.36 -167.18 REMARK 500 ALA A 48 149.53 -179.19 REMARK 500 ARG A 70 141.11 -171.93 REMARK 500 ALA A 89 141.29 -174.67 REMARK 500 PHE A 110 12.61 -143.87 REMARK 500 ASP A 120 -9.62 63.63 REMARK 500 GLN A 122 177.02 -58.98 REMARK 500 ASP A 137 -159.65 -160.93 REMARK 500 ASN A 170 34.75 -89.14 REMARK 500 ASP A 172 57.74 -93.50 REMARK 500 ASN A 216 107.99 -172.44 REMARK 500 ASN A 263 58.09 -166.30 REMARK 500 ALA A 273 -163.30 -111.51 REMARK 500 GLN A 275 28.17 48.10 REMARK 500 ASN A 337 -6.21 -140.26 REMARK 500 ASN A 371 95.23 -170.36 REMARK 500 PHE A 380 -122.15 -118.23 REMARK 500 TRP A 484 -100.05 -123.14 REMARK 500 TYR A 533 -6.33 82.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 257 0.26 SIDE CHAIN REMARK 500 ARG A 384 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 542 OH REMARK 620 2 TRP A 561 O 66.8 REMARK 620 3 LYS A 580 O 113.8 60.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FUV A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 703 DBREF1 6D4O A 1 611 UNP A0A174ZZA3_9FIRM DBREF2 6D4O A A0A174ZZA3 1 611 SEQADV 6D4O SER A -2 UNP A0A174ZZA EXPRESSION TAG SEQADV 6D4O ASN A -1 UNP A0A174ZZA EXPRESSION TAG SEQADV 6D4O ALA A 0 UNP A0A174ZZA EXPRESSION TAG SEQADV 6D4O ASP A 120 UNP A0A174ZZA HIS 120 CONFLICT SEQRES 1 A 614 SER ASN ALA MET LEU TYR PRO VAL LEU THR GLN SER ARG SEQRES 2 A 614 LEU LEU SER ASP LEU SER GLY VAL TRP ASN PHE LYS LEU SEQRES 3 A 614 ASP ASN GLY LYS GLY PHE GLU GLU LYS TRP TYR GLU LYS SEQRES 4 A 614 PRO LEU LYS ASP ALA ASP THR MET PRO VAL PRO ALA SER SEQRES 5 A 614 TYR ASN ASP LEU LYS GLU GLY THR ASP PHE ARG ASP HIS SEQRES 6 A 614 TYR GLY TRP VAL PHE TYR GLN ARG ASN ILE SER VAL PRO SEQRES 7 A 614 GLU TYR VAL LYS SER GLN ARG ILE VAL LEU ARG CYS ALA SEQRES 8 A 614 ALA VAL THR HIS TYR ALA MET ILE TYR LEU ASN GLY LYS SEQRES 9 A 614 LEU ILE CYS GLU HIS LYS GLY GLY PHE LEU PRO PHE GLU SEQRES 10 A 614 VAL GLU LEU ASN ASP ASP LEU GLN ASP GLY ASP ASN LEU SEQRES 11 A 614 LEU THR ILE ALA VAL ASN ASN VAL ILE ASP TYR THR THR SEQRES 12 A 614 LEU PRO VAL GLY GLY LYS ALA ASN MET MET SER GLY MET SEQRES 13 A 614 MET GLY GLY MET GLY ALA GLY ALA SER ASP LYS PRO GLN SEQRES 14 A 614 ASN ASN PRO ASN PHE ASP PHE PHE ASN TYR CYS GLY ILE SEQRES 15 A 614 THR ARG PRO VAL LYS ILE TYR THR THR PRO GLU THR TYR SEQRES 16 A 614 ILE ASN ASP ILE THR VAL THR ALA ASP ILE ASP PHE THR SEQRES 17 A 614 LYS GLU GLU PRO SER ALA VAL LEU ASN TYR ASN VAL GLU SEQRES 18 A 614 ILE LYS GLY LYS ASP TYR ASN ASN ILE THR CYS LYS VAL SEQRES 19 A 614 GLU LEU PHE ASP GLU GLU GLY THR LYS LEU SER GLU THR SEQRES 20 A 614 GLU GLY SER GLU GLY THR PHE GLU ILE SER ASN VAL ARG SEQRES 21 A 614 LEU TRP GLN PRO LEU ASN ALA TYR LEU TYR LYS ILE LYS SEQRES 22 A 614 VAL THR ALA GLY GLN ASP VAL TYR THR LEU PRO TYR GLY SEQRES 23 A 614 VAL ARG SER VAL ARG VAL ASP GLY THR LYS PHE LEU ILE SEQRES 24 A 614 ASN GLU LYS PRO PHE TYR PHE LYS GLY TYR GLY LYS HIS SEQRES 25 A 614 GLU ASP THR PHE PRO ASN GLY ARG GLY ILE ASN LEU PRO SEQRES 26 A 614 MET ASN THR LYS ASP ILE SER ILE MET LYS TRP GLN HIS SEQRES 27 A 614 ALA ASN SER PHE ARG THR SER HIS TYR PRO TYR SER GLU SEQRES 28 A 614 GLU MET MET ARG LEU CYS ASP GLU GLU GLY ILE VAL VAL SEQRES 29 A 614 ILE ASP GLU THR THR ALA VAL GLY VAL ASN LEU GLN PHE SEQRES 30 A 614 GLY GLY GLY ALA ASN PHE GLY GLY GLU ARG ILE GLY THR SEQRES 31 A 614 PHE ASP LYS GLU HIS GLY VAL GLN THR GLN GLU HIS HIS SEQRES 32 A 614 LYS ASP VAL ILE ARG ASP LEU ILE SER ARG ASP LYS ASN SEQRES 33 A 614 HIS ALA CYS VAL VAL MET TRP SER ILE ALA ASN GLU PRO SEQRES 34 A 614 ASP SER ALA ALA GLU GLY ALA TYR ASP TYR PHE LYS PRO SEQRES 35 A 614 LEU TYR ASP LEU ALA ARG GLU LEU ASP PRO GLN LYS ARG SEQRES 36 A 614 PRO CYS THR LEU VAL SER VAL GLN GLY THR THR ALA ASP SEQRES 37 A 614 THR ASP CYS SER SER GLN LEU SER ASP VAL ILE CYS LEU SEQRES 38 A 614 ASN ARG TYR TYR GLY TRP TYR PHE GLY GLY PRO ASP LEU SEQRES 39 A 614 GLU VAL SER GLU THR GLY LEU ARG LYS GLU LEU SER ASP SEQRES 40 A 614 TRP GLY LYS LEU GLY LYS PRO VAL MET PHE THR GLU TYR SEQRES 41 A 614 GLY ALA ASP THR VAL SER GLY LEU HIS ASP THR THR SER SEQRES 42 A 614 VAL MET TYR THR GLU GLU TYR GLN VAL GLU TYR TYR GLU SEQRES 43 A 614 MET ASN ASN LYS VAL PHE ASP GLU PHE ASP PHE VAL VAL SEQRES 44 A 614 GLY GLU GLN ALA TRP ASN PHE ALA ASP PHE ALA THR SER SEQRES 45 A 614 GLN SER LEU LEU ARG VAL GLN GLY ASN LYS LYS GLY LEU SEQRES 46 A 614 PHE THR ARG ASP ARG LYS PRO LYS MET VAL ALA HIS TYR SEQRES 47 A 614 PHE ARG ASN ARG TRP SER ALA ILE PRO GLU PHE GLY TYR SEQRES 48 A 614 LYS THR LYS HET FUV A 701 34 HET CL A 702 1 HET NA A 703 1 HETNAM FUV (5AR,9AR)-2-CHLORO-11-(4-BETA-D- HETNAM 2 FUV GLUCOPYRANURONOSYLPIPERAZIN-1-YL)-5A,6,9,9A- HETNAM 3 FUV TETRAHYDRODIBENZO[B,F][1,4]OXAZEPINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 FUV C23 H28 CL N3 O7 FORMUL 3 CL CL 1- FORMUL 4 NA NA 1+ FORMUL 5 HOH *48(H2 O) HELIX 1 AA1 GLY A 56 ASP A 61 1 6 HELIX 2 AA2 PRO A 75 LYS A 79 5 5 HELIX 3 AA3 ASN A 320 HIS A 335 1 16 HELIX 4 AA4 SER A 347 GLY A 358 1 12 HELIX 5 AA5 THR A 396 LYS A 412 1 17 HELIX 6 AA6 GLY A 432 ASP A 448 1 17 HELIX 7 AA7 CYS A 468 SER A 473 1 6 HELIX 8 AA8 ASP A 490 GLY A 506 1 17 HELIX 9 AA9 LYS A 507 GLY A 509 5 3 HELIX 10 AB1 THR A 534 ASP A 550 1 17 HELIX 11 AB2 LYS A 590 ALA A 602 1 13 SHEET 1 AA1 4 SER A 13 ASP A 14 0 SHEET 2 AA1 4 VAL A 183 THR A 188 -1 O ILE A 185 N SER A 13 SHEET 3 AA1 4 ARG A 82 CYS A 87 -1 N ARG A 82 O THR A 188 SHEET 4 AA1 4 PHE A 113 GLU A 116 -1 O VAL A 115 N LEU A 85 SHEET 1 AA2 6 ASP A 42 VAL A 46 0 SHEET 2 AA2 6 GLY A 17 LEU A 23 -1 N PHE A 21 O ASP A 42 SHEET 3 AA2 6 TRP A 65 ILE A 72 -1 O PHE A 67 N LYS A 22 SHEET 4 AA2 6 ASN A 126 ASN A 133 -1 O ILE A 130 N TYR A 68 SHEET 5 AA2 6 TYR A 93 LEU A 98 -1 N TYR A 97 O THR A 129 SHEET 6 AA2 6 LYS A 101 LYS A 107 -1 O ILE A 103 N ILE A 96 SHEET 1 AA3 3 ILE A 196 ASP A 203 0 SHEET 2 AA3 3 SER A 210 VAL A 217 -1 O VAL A 212 N ASP A 201 SHEET 3 AA3 3 GLU A 248 ILE A 253 -1 O PHE A 251 N LEU A 213 SHEET 1 AA4 4 LYS A 240 GLU A 243 0 SHEET 2 AA4 4 GLU A 232 PHE A 234 -1 N LEU A 233 O LEU A 241 SHEET 3 AA4 4 TYR A 267 ALA A 273 -1 O LYS A 270 N GLU A 232 SHEET 4 AA4 4 ASP A 276 TYR A 282 -1 O TYR A 278 N VAL A 271 SHEET 1 AA5 3 VAL A 287 VAL A 289 0 SHEET 2 AA5 3 PHE A 294 ILE A 296 -1 O LEU A 295 N ARG A 288 SHEET 3 AA5 3 LYS A 299 PHE A 301 -1 O PHE A 301 N PHE A 294 SHEET 1 AA6 9 PHE A 303 GLY A 307 0 SHEET 2 AA6 9 SER A 338 ARG A 340 1 N SER A 338 O LYS A 304 SHEET 3 AA6 9 VAL A 360 GLU A 364 1 O VAL A 360 N PHE A 339 SHEET 4 AA6 9 VAL A 417 ASN A 424 1 O VAL A 418 N VAL A 361 SHEET 5 AA6 9 CYS A 454 SER A 458 1 O THR A 455 N ILE A 422 SHEET 6 AA6 9 ILE A 476 ASN A 479 1 O CYS A 477 N SER A 458 SHEET 7 AA6 9 VAL A 512 GLU A 516 1 O MET A 513 N ILE A 476 SHEET 8 AA6 9 VAL A 555 ALA A 560 1 O GLY A 557 N PHE A 514 SHEET 9 AA6 9 PHE A 303 GLY A 307 1 N PHE A 303 O GLU A 558 LINK OH TYR A 542 NA NA A 703 1555 1555 2.61 LINK O TRP A 561 NA NA A 703 1555 1555 3.06 LINK O LYS A 580 NA NA A 703 1555 1555 2.65 CISPEP 1 VAL A 46 PRO A 47 0 -1.67 CISPEP 2 THR A 91 HIS A 92 0 5.91 CISPEP 3 LEU A 141 PRO A 142 0 6.17 CISPEP 4 PHE A 313 PRO A 314 0 -4.65 CISPEP 5 SER A 342 HIS A 343 0 -8.76 CISPEP 6 GLY A 488 PRO A 489 0 5.98 CISPEP 7 TRP A 561 ASN A 562 0 -4.50 SITE 1 AC1 17 MET A 149 ASP A 172 HIS A 343 PHE A 374 SITE 2 AC1 17 ASN A 424 GLU A 425 ASN A 479 TYR A 481 SITE 3 AC1 17 TYR A 485 PHE A 486 GLU A 516 TRP A 561 SITE 4 AC1 17 ARG A 574 ASN A 578 LYS A 580 HOH A 813 SITE 5 AC1 17 HOH A 815 SITE 1 AC2 4 GLY A 307 ARG A 340 THR A 515 GLN A 559 SITE 1 AC3 6 GLY A 518 ALA A 519 GLN A 538 TYR A 542 SITE 2 AC3 6 TRP A 561 LYS A 580 CRYST1 179.954 179.954 134.941 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005557 0.003208 0.000000 0.00000 SCALE2 0.000000 0.006417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007411 0.00000