data_6DK5 # _entry.id 6DK5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DK5 pdb_00006dk5 10.2210/pdb6dk5/pdb WWPDB D_1000234505 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DK5 _pdbx_database_status.recvd_initial_deposition_date 2018-05-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'McPherson, A.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr F Struct Biol Commun' _citation.journal_id_ASTM ACSFEN _citation.journal_id_CSD ? _citation.journal_id_ISSN 2053-230X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 75 _citation.language ? _citation.page_first 47 _citation.page_last 53 _citation.title 'The X-ray crystal structure of human endothelin 1, a polypeptide hormone regulator of blood pressure.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S2053230X18016011 _citation.pdbx_database_id_PubMed 30605125 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McPherson, A.' 1 ? primary 'Larson, S.B.' 2 0000-0002-7681-8445 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6DK5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 27.328 _cell.length_a_esd ? _cell.length_b 27.328 _cell.length_b_esd ? _cell.length_c 79.538 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Endothelin-1 2497.951 2 ? ? 'UNP residues 53-73' ? 2 water nat water 18.015 24 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Preproendothelin-1,PPET1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CSCSSLMDKECVYFCHLDIIW _entity_poly.pdbx_seq_one_letter_code_can CSCSSLMDKECVYFCHLDIIW _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 SER n 1 3 CYS n 1 4 SER n 1 5 SER n 1 6 LEU n 1 7 MET n 1 8 ASP n 1 9 LYS n 1 10 GLU n 1 11 CYS n 1 12 VAL n 1 13 TYR n 1 14 PHE n 1 15 CYS n 1 16 HIS n 1 17 LEU n 1 18 ASP n 1 19 ILE n 1 20 ILE n 1 21 TRP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 21 _entity_src_nat.common_name Human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EDN1_HUMAN _struct_ref.pdbx_db_accession P05305 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CSCSSLMDKECVYFCHLDIIW _struct_ref.pdbx_align_begin 53 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6DK5 B 1 ? 21 ? P05305 53 ? 73 ? 1 21 2 1 6DK5 A 1 ? 21 ? P05305 53 ? 73 ? 1 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DK5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 29.16 _exptl_crystal.description 'hexagonal prisms c. 400 um long, c. 150 um wide' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details 298-310 _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '4 uL 15 mg/mL aqueous endothelin + 6 uL reservoir solution (20-25% MPD, 0.2 M MES, pH 6.5) + 2 uL 0.2 M MES, pH 6.5' _exptl_crystal_grow.pdbx_pH_range 6.0-7.0 # _diffrn.ambient_environment ? _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.diffrn_id 1 _diffrn_detector.type SDMS _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 1997-06-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Supper graphite crystal monochromator' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU RU200' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DK5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 80.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2534 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.7 _reflns.pdbx_Rmerge_I_obs 0.257 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.257 _reflns.pdbx_netI_over_av_sigmaI 4.6 _reflns.pdbx_netI_over_sigmaI 4.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.283 _reflns.pdbx_Rpim_I_all 0.086 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.947 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.01 _refine.aniso_B[1][2] 0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.05 _refine.B_iso_max ? _refine.B_iso_mean 32.583 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.917 _refine.correlation_coeff_Fo_to_Fc_free 0.856 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DK5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.85 _refine.ls_d_res_low 23.67 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2534 _refine.ls_number_reflns_R_free 143 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.92 _refine.ls_percent_reflns_R_free 5.3 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20790 _refine.ls_R_factor_R_free 0.28373 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20387 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 5GLH' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.224 _refine.pdbx_overall_ESU_R_Free 0.206 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.383 _refine.overall_SU_ML 0.082 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 334 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 358 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 23.67 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 0.019 346 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 306 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.632 1.920 468 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.883 3.000 712 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 8.030 5.000 40 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 42.176 23.333 12 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 20.160 15.000 60 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.096 0.200 52 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 0.020 358 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 74 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 3.171 3.375 166 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 3.144 3.365 165 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 4.635 5.046 204 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 4.629 5.054 205 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.696 3.426 180 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.690 3.424 181 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.994 5.166 265 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 7.759 62.313 1193 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 7.752 62.403 1186 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.851 _refine_ls_shell.d_res_low 1.899 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 17 _refine_ls_shell.number_reflns_R_work 178 _refine_ls_shell.percent_reflns_obs 88.64 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.061 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.046 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6DK5 _struct.title 'The X-ray crystal structure of human endothelin-1, a polypeptide hormone regulator of blood pressure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DK5 _struct_keywords.text 'blood pressure, vasoconstrictor, sarafotoxins, polypeptide, hypertension, diabetes, stroke, HORMONE' _struct_keywords.pdbx_keywords HORMONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 8 ? CYS A 15 ? ASP B 8 CYS B 15 1 ? 8 HELX_P HELX_P2 AA2 ASP B 8 ? TYR B 13 ? ASP A 8 TYR A 13 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 15 SG ? ? B CYS 1 B CYS 15 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 11 SG ? ? B CYS 3 B CYS 11 1_555 ? ? ? ? ? ? ? 2.066 ? ? disulf3 disulf ? ? B CYS 1 SG ? ? ? 1_555 B CYS 15 SG ? ? A CYS 1 A CYS 15 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 11 SG ? ? A CYS 3 A CYS 11 1_555 ? ? ? ? ? ? ? 2.019 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6DK5 _atom_sites.fract_transf_matrix[1][1] 0.036593 _atom_sites.fract_transf_matrix[1][2] 0.021127 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.042254 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012573 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS B . n A 1 2 SER 2 2 2 SER SER B . n A 1 3 CYS 3 3 3 CYS CYS B . n A 1 4 SER 4 4 4 SER SER B . n A 1 5 SER 5 5 5 SER SER B . n A 1 6 LEU 6 6 6 LEU LEU B . n A 1 7 MET 7 7 7 MET MET B . n A 1 8 ASP 8 8 8 ASP ALA B . n A 1 9 LYS 9 9 9 LYS LYS B . n A 1 10 GLU 10 10 10 GLU GLU B . n A 1 11 CYS 11 11 11 CYS CYS B . n A 1 12 VAL 12 12 12 VAL VAL B . n A 1 13 TYR 13 13 13 TYR TYR B . n A 1 14 PHE 14 14 14 PHE PHE B . n A 1 15 CYS 15 15 15 CYS CYS B . n A 1 16 HIS 16 16 16 HIS HIS B . n A 1 17 LEU 17 17 17 LEU LEU B . n A 1 18 ASP 18 18 18 ASP ASP B . n A 1 19 ILE 19 19 19 ILE ILE B . n A 1 20 ILE 20 20 20 ILE ILE B . n A 1 21 TRP 21 21 21 TRP TRP B . n B 1 1 CYS 1 1 1 CYS CYS A . n B 1 2 SER 2 2 2 SER SER A . n B 1 3 CYS 3 3 3 CYS CYS A . n B 1 4 SER 4 4 4 SER SER A . n B 1 5 SER 5 5 5 SER SER A . n B 1 6 LEU 6 6 6 LEU LEU A . n B 1 7 MET 7 7 7 MET MET A . n B 1 8 ASP 8 8 8 ASP ALA A . n B 1 9 LYS 9 9 9 LYS LYS A . n B 1 10 GLU 10 10 10 GLU GLU A . n B 1 11 CYS 11 11 11 CYS CYS A . n B 1 12 VAL 12 12 12 VAL VAL A . n B 1 13 TYR 13 13 13 TYR TYR A . n B 1 14 PHE 14 14 14 PHE PHE A . n B 1 15 CYS 15 15 15 CYS CYS A . n B 1 16 HIS 16 16 16 HIS HIS A . n B 1 17 LEU 17 17 17 LEU LEU A . n B 1 18 ASP 18 18 18 ASP ASP A . n B 1 19 ILE 19 19 19 ILE ILE A . n B 1 20 ILE 20 20 20 ILE ILE A . n B 1 21 TRP 21 21 21 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 4 HOH HOH B . C 2 HOH 2 102 17 HOH HOH B . C 2 HOH 3 103 24 HOH HOH B . C 2 HOH 4 104 9 HOH HOH B . C 2 HOH 5 105 11 HOH HOH B . C 2 HOH 6 106 7 HOH HOH B . C 2 HOH 7 107 23 HOH HOH B . C 2 HOH 8 108 20 HOH HOH B . C 2 HOH 9 109 18 HOH HOH B . C 2 HOH 10 110 2 HOH HOH B . C 2 HOH 11 111 10 HOH HOH B . C 2 HOH 12 112 12 HOH HOH B . C 2 HOH 13 113 19 HOH HOH B . D 2 HOH 1 101 16 HOH HOH A . D 2 HOH 2 102 21 HOH HOH A . D 2 HOH 3 103 15 HOH HOH A . D 2 HOH 4 104 13 HOH HOH A . D 2 HOH 5 105 6 HOH HOH A . D 2 HOH 6 106 22 HOH HOH A . D 2 HOH 7 107 14 HOH HOH A . D 2 HOH 8 108 8 HOH HOH A . D 2 HOH 9 109 1 HOH HOH A . D 2 HOH 10 110 3 HOH HOH A . D 2 HOH 11 111 5 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,D 2 1 A,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-02 2 'Structure model' 1 1 2019-01-16 3 'Structure model' 1 2 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Database references' 7 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_validate_symm_contact 4 2 'Structure model' struct_conn 5 2 'Structure model' struct_conn_type 6 3 'Structure model' chem_comp_atom 7 3 'Structure model' chem_comp_bond 8 3 'Structure model' database_2 9 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_ASTM' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 3 'Structure model' '_database_2.pdbx_DOI' 14 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? SDMS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 11 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 106 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CE1 B TYR 13 ? ? 1_555 SD A MET 7 ? ? 1_565 1.77 2 1 OG B SER 2 ? ? 1_555 CG2 B ILE 20 ? ? 5_664 1.82 3 1 CZ B TYR 13 ? ? 1_555 SD A MET 7 ? ? 1_565 1.89 4 1 OH B TYR 13 ? ? 1_555 O A LEU 6 ? ? 1_565 1.97 5 1 NZ B LYS 9 ? ? 1_555 O A MET 7 ? ? 5_674 1.98 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA B CYS 3 ? ? CB B CYS 3 ? ? SG B CYS 3 ? ? 121.22 114.20 7.02 1.10 N 2 1 CA B CYS 11 ? ? CB B CYS 11 ? ? SG B CYS 11 ? ? 121.33 114.20 7.13 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP B 18 ? ? -154.11 73.83 2 1 ILE B 19 ? ? 66.75 -45.65 3 1 ILE A 19 ? ? 51.86 -47.37 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ASP 8 ? CG ? A ASP 8 CG 2 1 Y 1 B ASP 8 ? OD1 ? A ASP 8 OD1 3 1 Y 1 B ASP 8 ? OD2 ? A ASP 8 OD2 4 1 Y 1 A ASP 8 ? CG ? B ASP 8 CG 5 1 Y 1 A ASP 8 ? OD1 ? B ASP 8 OD1 6 1 Y 1 A ASP 8 ? OD2 ? B ASP 8 OD2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 CYS N N N N 17 CYS CA C N R 18 CYS C C N N 19 CYS O O N N 20 CYS CB C N N 21 CYS SG S N N 22 CYS OXT O N N 23 CYS H H N N 24 CYS H2 H N N 25 CYS HA H N N 26 CYS HB2 H N N 27 CYS HB3 H N N 28 CYS HG H N N 29 CYS HXT H N N 30 GLU N N N N 31 GLU CA C N S 32 GLU C C N N 33 GLU O O N N 34 GLU CB C N N 35 GLU CG C N N 36 GLU CD C N N 37 GLU OE1 O N N 38 GLU OE2 O N N 39 GLU OXT O N N 40 GLU H H N N 41 GLU H2 H N N 42 GLU HA H N N 43 GLU HB2 H N N 44 GLU HB3 H N N 45 GLU HG2 H N N 46 GLU HG3 H N N 47 GLU HE2 H N N 48 GLU HXT H N N 49 HIS N N N N 50 HIS CA C N S 51 HIS C C N N 52 HIS O O N N 53 HIS CB C N N 54 HIS CG C Y N 55 HIS ND1 N Y N 56 HIS CD2 C Y N 57 HIS CE1 C Y N 58 HIS NE2 N Y N 59 HIS OXT O N N 60 HIS H H N N 61 HIS H2 H N N 62 HIS HA H N N 63 HIS HB2 H N N 64 HIS HB3 H N N 65 HIS HD1 H N N 66 HIS HD2 H N N 67 HIS HE1 H N N 68 HIS HE2 H N N 69 HIS HXT H N N 70 HOH O O N N 71 HOH H1 H N N 72 HOH H2 H N N 73 ILE N N N N 74 ILE CA C N S 75 ILE C C N N 76 ILE O O N N 77 ILE CB C N S 78 ILE CG1 C N N 79 ILE CG2 C N N 80 ILE CD1 C N N 81 ILE OXT O N N 82 ILE H H N N 83 ILE H2 H N N 84 ILE HA H N N 85 ILE HB H N N 86 ILE HG12 H N N 87 ILE HG13 H N N 88 ILE HG21 H N N 89 ILE HG22 H N N 90 ILE HG23 H N N 91 ILE HD11 H N N 92 ILE HD12 H N N 93 ILE HD13 H N N 94 ILE HXT H N N 95 LEU N N N N 96 LEU CA C N S 97 LEU C C N N 98 LEU O O N N 99 LEU CB C N N 100 LEU CG C N N 101 LEU CD1 C N N 102 LEU CD2 C N N 103 LEU OXT O N N 104 LEU H H N N 105 LEU H2 H N N 106 LEU HA H N N 107 LEU HB2 H N N 108 LEU HB3 H N N 109 LEU HG H N N 110 LEU HD11 H N N 111 LEU HD12 H N N 112 LEU HD13 H N N 113 LEU HD21 H N N 114 LEU HD22 H N N 115 LEU HD23 H N N 116 LEU HXT H N N 117 LYS N N N N 118 LYS CA C N S 119 LYS C C N N 120 LYS O O N N 121 LYS CB C N N 122 LYS CG C N N 123 LYS CD C N N 124 LYS CE C N N 125 LYS NZ N N N 126 LYS OXT O N N 127 LYS H H N N 128 LYS H2 H N N 129 LYS HA H N N 130 LYS HB2 H N N 131 LYS HB3 H N N 132 LYS HG2 H N N 133 LYS HG3 H N N 134 LYS HD2 H N N 135 LYS HD3 H N N 136 LYS HE2 H N N 137 LYS HE3 H N N 138 LYS HZ1 H N N 139 LYS HZ2 H N N 140 LYS HZ3 H N N 141 LYS HXT H N N 142 MET N N N N 143 MET CA C N S 144 MET C C N N 145 MET O O N N 146 MET CB C N N 147 MET CG C N N 148 MET SD S N N 149 MET CE C N N 150 MET OXT O N N 151 MET H H N N 152 MET H2 H N N 153 MET HA H N N 154 MET HB2 H N N 155 MET HB3 H N N 156 MET HG2 H N N 157 MET HG3 H N N 158 MET HE1 H N N 159 MET HE2 H N N 160 MET HE3 H N N 161 MET HXT H N N 162 PHE N N N N 163 PHE CA C N S 164 PHE C C N N 165 PHE O O N N 166 PHE CB C N N 167 PHE CG C Y N 168 PHE CD1 C Y N 169 PHE CD2 C Y N 170 PHE CE1 C Y N 171 PHE CE2 C Y N 172 PHE CZ C Y N 173 PHE OXT O N N 174 PHE H H N N 175 PHE H2 H N N 176 PHE HA H N N 177 PHE HB2 H N N 178 PHE HB3 H N N 179 PHE HD1 H N N 180 PHE HD2 H N N 181 PHE HE1 H N N 182 PHE HE2 H N N 183 PHE HZ H N N 184 PHE HXT H N N 185 SER N N N N 186 SER CA C N S 187 SER C C N N 188 SER O O N N 189 SER CB C N N 190 SER OG O N N 191 SER OXT O N N 192 SER H H N N 193 SER H2 H N N 194 SER HA H N N 195 SER HB2 H N N 196 SER HB3 H N N 197 SER HG H N N 198 SER HXT H N N 199 TRP N N N N 200 TRP CA C N S 201 TRP C C N N 202 TRP O O N N 203 TRP CB C N N 204 TRP CG C Y N 205 TRP CD1 C Y N 206 TRP CD2 C Y N 207 TRP NE1 N Y N 208 TRP CE2 C Y N 209 TRP CE3 C Y N 210 TRP CZ2 C Y N 211 TRP CZ3 C Y N 212 TRP CH2 C Y N 213 TRP OXT O N N 214 TRP H H N N 215 TRP H2 H N N 216 TRP HA H N N 217 TRP HB2 H N N 218 TRP HB3 H N N 219 TRP HD1 H N N 220 TRP HE1 H N N 221 TRP HE3 H N N 222 TRP HZ2 H N N 223 TRP HZ3 H N N 224 TRP HH2 H N N 225 TRP HXT H N N 226 TYR N N N N 227 TYR CA C N S 228 TYR C C N N 229 TYR O O N N 230 TYR CB C N N 231 TYR CG C Y N 232 TYR CD1 C Y N 233 TYR CD2 C Y N 234 TYR CE1 C Y N 235 TYR CE2 C Y N 236 TYR CZ C Y N 237 TYR OH O N N 238 TYR OXT O N N 239 TYR H H N N 240 TYR H2 H N N 241 TYR HA H N N 242 TYR HB2 H N N 243 TYR HB3 H N N 244 TYR HD1 H N N 245 TYR HD2 H N N 246 TYR HE1 H N N 247 TYR HE2 H N N 248 TYR HH H N N 249 TYR HXT H N N 250 VAL N N N N 251 VAL CA C N S 252 VAL C C N N 253 VAL O O N N 254 VAL CB C N N 255 VAL CG1 C N N 256 VAL CG2 C N N 257 VAL OXT O N N 258 VAL H H N N 259 VAL H2 H N N 260 VAL HA H N N 261 VAL HB H N N 262 VAL HG11 H N N 263 VAL HG12 H N N 264 VAL HG13 H N N 265 VAL HG21 H N N 266 VAL HG22 H N N 267 VAL HG23 H N N 268 VAL HXT H N N 269 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 CYS N CA sing N N 16 CYS N H sing N N 17 CYS N H2 sing N N 18 CYS CA C sing N N 19 CYS CA CB sing N N 20 CYS CA HA sing N N 21 CYS C O doub N N 22 CYS C OXT sing N N 23 CYS CB SG sing N N 24 CYS CB HB2 sing N N 25 CYS CB HB3 sing N N 26 CYS SG HG sing N N 27 CYS OXT HXT sing N N 28 GLU N CA sing N N 29 GLU N H sing N N 30 GLU N H2 sing N N 31 GLU CA C sing N N 32 GLU CA CB sing N N 33 GLU CA HA sing N N 34 GLU C O doub N N 35 GLU C OXT sing N N 36 GLU CB CG sing N N 37 GLU CB HB2 sing N N 38 GLU CB HB3 sing N N 39 GLU CG CD sing N N 40 GLU CG HG2 sing N N 41 GLU CG HG3 sing N N 42 GLU CD OE1 doub N N 43 GLU CD OE2 sing N N 44 GLU OE2 HE2 sing N N 45 GLU OXT HXT sing N N 46 HIS N CA sing N N 47 HIS N H sing N N 48 HIS N H2 sing N N 49 HIS CA C sing N N 50 HIS CA CB sing N N 51 HIS CA HA sing N N 52 HIS C O doub N N 53 HIS C OXT sing N N 54 HIS CB CG sing N N 55 HIS CB HB2 sing N N 56 HIS CB HB3 sing N N 57 HIS CG ND1 sing Y N 58 HIS CG CD2 doub Y N 59 HIS ND1 CE1 doub Y N 60 HIS ND1 HD1 sing N N 61 HIS CD2 NE2 sing Y N 62 HIS CD2 HD2 sing N N 63 HIS CE1 NE2 sing Y N 64 HIS CE1 HE1 sing N N 65 HIS NE2 HE2 sing N N 66 HIS OXT HXT sing N N 67 HOH O H1 sing N N 68 HOH O H2 sing N N 69 ILE N CA sing N N 70 ILE N H sing N N 71 ILE N H2 sing N N 72 ILE CA C sing N N 73 ILE CA CB sing N N 74 ILE CA HA sing N N 75 ILE C O doub N N 76 ILE C OXT sing N N 77 ILE CB CG1 sing N N 78 ILE CB CG2 sing N N 79 ILE CB HB sing N N 80 ILE CG1 CD1 sing N N 81 ILE CG1 HG12 sing N N 82 ILE CG1 HG13 sing N N 83 ILE CG2 HG21 sing N N 84 ILE CG2 HG22 sing N N 85 ILE CG2 HG23 sing N N 86 ILE CD1 HD11 sing N N 87 ILE CD1 HD12 sing N N 88 ILE CD1 HD13 sing N N 89 ILE OXT HXT sing N N 90 LEU N CA sing N N 91 LEU N H sing N N 92 LEU N H2 sing N N 93 LEU CA C sing N N 94 LEU CA CB sing N N 95 LEU CA HA sing N N 96 LEU C O doub N N 97 LEU C OXT sing N N 98 LEU CB CG sing N N 99 LEU CB HB2 sing N N 100 LEU CB HB3 sing N N 101 LEU CG CD1 sing N N 102 LEU CG CD2 sing N N 103 LEU CG HG sing N N 104 LEU CD1 HD11 sing N N 105 LEU CD1 HD12 sing N N 106 LEU CD1 HD13 sing N N 107 LEU CD2 HD21 sing N N 108 LEU CD2 HD22 sing N N 109 LEU CD2 HD23 sing N N 110 LEU OXT HXT sing N N 111 LYS N CA sing N N 112 LYS N H sing N N 113 LYS N H2 sing N N 114 LYS CA C sing N N 115 LYS CA CB sing N N 116 LYS CA HA sing N N 117 LYS C O doub N N 118 LYS C OXT sing N N 119 LYS CB CG sing N N 120 LYS CB HB2 sing N N 121 LYS CB HB3 sing N N 122 LYS CG CD sing N N 123 LYS CG HG2 sing N N 124 LYS CG HG3 sing N N 125 LYS CD CE sing N N 126 LYS CD HD2 sing N N 127 LYS CD HD3 sing N N 128 LYS CE NZ sing N N 129 LYS CE HE2 sing N N 130 LYS CE HE3 sing N N 131 LYS NZ HZ1 sing N N 132 LYS NZ HZ2 sing N N 133 LYS NZ HZ3 sing N N 134 LYS OXT HXT sing N N 135 MET N CA sing N N 136 MET N H sing N N 137 MET N H2 sing N N 138 MET CA C sing N N 139 MET CA CB sing N N 140 MET CA HA sing N N 141 MET C O doub N N 142 MET C OXT sing N N 143 MET CB CG sing N N 144 MET CB HB2 sing N N 145 MET CB HB3 sing N N 146 MET CG SD sing N N 147 MET CG HG2 sing N N 148 MET CG HG3 sing N N 149 MET SD CE sing N N 150 MET CE HE1 sing N N 151 MET CE HE2 sing N N 152 MET CE HE3 sing N N 153 MET OXT HXT sing N N 154 PHE N CA sing N N 155 PHE N H sing N N 156 PHE N H2 sing N N 157 PHE CA C sing N N 158 PHE CA CB sing N N 159 PHE CA HA sing N N 160 PHE C O doub N N 161 PHE C OXT sing N N 162 PHE CB CG sing N N 163 PHE CB HB2 sing N N 164 PHE CB HB3 sing N N 165 PHE CG CD1 doub Y N 166 PHE CG CD2 sing Y N 167 PHE CD1 CE1 sing Y N 168 PHE CD1 HD1 sing N N 169 PHE CD2 CE2 doub Y N 170 PHE CD2 HD2 sing N N 171 PHE CE1 CZ doub Y N 172 PHE CE1 HE1 sing N N 173 PHE CE2 CZ sing Y N 174 PHE CE2 HE2 sing N N 175 PHE CZ HZ sing N N 176 PHE OXT HXT sing N N 177 SER N CA sing N N 178 SER N H sing N N 179 SER N H2 sing N N 180 SER CA C sing N N 181 SER CA CB sing N N 182 SER CA HA sing N N 183 SER C O doub N N 184 SER C OXT sing N N 185 SER CB OG sing N N 186 SER CB HB2 sing N N 187 SER CB HB3 sing N N 188 SER OG HG sing N N 189 SER OXT HXT sing N N 190 TRP N CA sing N N 191 TRP N H sing N N 192 TRP N H2 sing N N 193 TRP CA C sing N N 194 TRP CA CB sing N N 195 TRP CA HA sing N N 196 TRP C O doub N N 197 TRP C OXT sing N N 198 TRP CB CG sing N N 199 TRP CB HB2 sing N N 200 TRP CB HB3 sing N N 201 TRP CG CD1 doub Y N 202 TRP CG CD2 sing Y N 203 TRP CD1 NE1 sing Y N 204 TRP CD1 HD1 sing N N 205 TRP CD2 CE2 doub Y N 206 TRP CD2 CE3 sing Y N 207 TRP NE1 CE2 sing Y N 208 TRP NE1 HE1 sing N N 209 TRP CE2 CZ2 sing Y N 210 TRP CE3 CZ3 doub Y N 211 TRP CE3 HE3 sing N N 212 TRP CZ2 CH2 doub Y N 213 TRP CZ2 HZ2 sing N N 214 TRP CZ3 CH2 sing Y N 215 TRP CZ3 HZ3 sing N N 216 TRP CH2 HH2 sing N N 217 TRP OXT HXT sing N N 218 TYR N CA sing N N 219 TYR N H sing N N 220 TYR N H2 sing N N 221 TYR CA C sing N N 222 TYR CA CB sing N N 223 TYR CA HA sing N N 224 TYR C O doub N N 225 TYR C OXT sing N N 226 TYR CB CG sing N N 227 TYR CB HB2 sing N N 228 TYR CB HB3 sing N N 229 TYR CG CD1 doub Y N 230 TYR CG CD2 sing Y N 231 TYR CD1 CE1 sing Y N 232 TYR CD1 HD1 sing N N 233 TYR CD2 CE2 doub Y N 234 TYR CD2 HD2 sing N N 235 TYR CE1 CZ doub Y N 236 TYR CE1 HE1 sing N N 237 TYR CE2 CZ sing Y N 238 TYR CE2 HE2 sing N N 239 TYR CZ OH sing N N 240 TYR OH HH sing N N 241 TYR OXT HXT sing N N 242 VAL N CA sing N N 243 VAL N H sing N N 244 VAL N H2 sing N N 245 VAL CA C sing N N 246 VAL CA CB sing N N 247 VAL CA HA sing N N 248 VAL C O doub N N 249 VAL C OXT sing N N 250 VAL CB CG1 sing N N 251 VAL CB CG2 sing N N 252 VAL CB HB sing N N 253 VAL CG1 HG11 sing N N 254 VAL CG1 HG12 sing N N 255 VAL CG1 HG13 sing N N 256 VAL CG2 HG21 sing N N 257 VAL CG2 HG22 sing N N 258 VAL CG2 HG23 sing N N 259 VAL OXT HXT sing N N 260 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5GLH _pdbx_initial_refinement_model.details 'PDB entry 5GLH' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #