data_6DLT # _entry.id 6DLT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.358 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DLT pdb_00006dlt 10.2210/pdb6dlt/pdb WWPDB D_1000234884 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DLT _pdbx_database_status.recvd_initial_deposition_date 2018-06-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Peselis, A.' 1 ? 'Serganov, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 887 _citation.page_last 894 _citation.title 'ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-018-0114-4 _citation.pdbx_database_id_PubMed 30120360 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Peselis, A.' 1 ? primary 'Serganov, A.' 2 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 122.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DLT _cell.details ? _cell.formula_units_Z ? _cell.length_a 83.567 _cell.length_a_esd ? _cell.length_b 90.756 _cell.length_b_esd ? _cell.length_c 74.174 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DLT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PRPP Riboswitch' 34902.508 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 4 non-polymer syn 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose 390.070 1 ? ? ? ? 5 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GAAAGUGUGUCUAGGGUUCCGCGUGCUUCGGCACGGACUGGUCCAAGUGACACAGACGCAUUCGUGCGUUACACC GGAGGGAUAGAAGCCCAGGCGGGUAGGUUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAAAGUGUGUCUAGGGUUCCGCGUGCUUCGGCACGGACUGGUCCAAGUGACACAGACGCAUUCGUGCGUUACACCGGAG GGAUAGAAGCCCAGGCGGGUAGGUUUC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 A n 1 5 A n 1 6 G n 1 7 U n 1 8 G n 1 9 U n 1 10 G n 1 11 U n 1 12 C n 1 13 U n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 U n 1 20 C n 1 21 C n 1 22 G n 1 23 C n 1 24 G n 1 25 U n 1 26 G n 1 27 C n 1 28 U n 1 29 U n 1 30 C n 1 31 G n 1 32 G n 1 33 C n 1 34 A n 1 35 C n 1 36 G n 1 37 G n 1 38 A n 1 39 C n 1 40 U n 1 41 G n 1 42 G n 1 43 U n 1 44 C n 1 45 C n 1 46 A n 1 47 A n 1 48 G n 1 49 U n 1 50 G n 1 51 A n 1 52 C n 1 53 A n 1 54 C n 1 55 A n 1 56 G n 1 57 A n 1 58 C n 1 59 G n 1 60 C n 1 61 A n 1 62 U n 1 63 U n 1 64 C n 1 65 G n 1 66 U n 1 67 G n 1 68 C n 1 69 G n 1 70 U n 1 71 U n 1 72 A n 1 73 C n 1 74 A n 1 75 C n 1 76 C n 1 77 G n 1 78 G n 1 79 A n 1 80 G n 1 81 G n 1 82 G n 1 83 A n 1 84 U n 1 85 A n 1 86 G n 1 87 A n 1 88 A n 1 89 G n 1 90 C n 1 91 C n 1 92 C n 1 93 A n 1 94 G n 1 95 G n 1 96 C n 1 97 G n 1 98 G n 1 99 G n 1 100 U n 1 101 A n 1 102 G n 1 103 G n 1 104 U n 1 105 U n 1 106 U n 1 107 CCC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 107 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Syntrophothermus lipocalidus DSM 12680' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 643648 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DLT _struct_ref.pdbx_db_accession 6DLT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DLT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DLT _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 107 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 107 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRP D-saccharide n 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose ;ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose; 1-O-pyrophosphono-5-O-phosphono-D-ribose; 1-O-pyrophosphono-5-O-phosphono-ribose ; 'C5 H13 O14 P3' 390.070 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DLT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 64.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M NH4-acetate, 0.1 M HEPES-KOH pH 7.4, and 45% 2-methyl-2,4-pentanediol (v/v)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-10-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DLT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.90 _reflns.d_resolution_low 20.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9366 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_Rmerge_I_obs 0.156 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.081 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.881 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 3.0 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.632 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.298 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -1.08 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.01 _refine.aniso_B[2][2] 6.45 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -3.00 _refine.B_iso_max ? _refine.B_iso_mean 60.466 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DLT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9 _refine.ls_d_res_low 20.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9366 _refine.ls_number_reflns_R_free 492 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 91.27 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22548 _refine.ls_R_factor_R_free 0.24349 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.22454 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.676 _refine.pdbx_overall_ESU_R_Free 0.367 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 13.995 _refine.overall_SU_ML 0.263 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2310 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 2341 _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 0.011 2606 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 1052 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.237 1.319 4070 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.599 3.000 2541 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 432 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 1291 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 564 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.872 _refine_ls_shell.d_res_low 2.945 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_R_work 634 _refine_ls_shell.percent_reflns_obs 85.99 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.437 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.395 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6DLT _struct.title 'PRPP Riboswitch bound to PRPP, native structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DLT _struct_keywords.text 'riboswitch, non-coding, RNA, yKKC' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale both ? A U 106 "O3'" ? ? ? 1_555 A CCC 107 P ? ? A U 106 A CCC 107 1_555 ? ? ? ? ? ? ? 1.598 ? ? metalc1 metalc ? ? A G 48 OP1 ? ? ? 1_555 B MG . MG ? ? A G 48 A MG 201 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc2 metalc ? ? A G 48 OP2 ? ? ? 1_555 C MG . MG ? ? A G 48 A MG 202 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc3 metalc ? ? A U 49 O2 ? ? ? 1_555 D MG . MG ? ? A U 49 A MG 203 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc4 metalc ? ? A C 75 OP2 ? ? ? 1_555 D MG . MG ? ? A C 75 A MG 203 1_555 ? ? ? ? ? ? ? 2.814 ? ? metalc5 metalc ? ? A C 90 OP1 ? ? ? 1_555 B MG . MG ? ? A C 90 A MG 201 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc6 metalc ? ? A C 91 OP2 ? ? ? 1_555 B MG . MG ? ? A C 91 A MG 201 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc7 metalc ? ? A C 91 OP1 ? ? ? 1_555 C MG . MG ? ? A C 91 A MG 202 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc8 metalc ? ? D MG . MG ? ? ? 1_555 H PRP . O2P A ? A MG 203 A PRP 207 1_555 ? ? ? ? ? ? ? 2.235 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A CCC 107 N3 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A CCC 107 O2 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A CCC 107 N4 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 106 N3 ? ? A A 3 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 106 O4 ? ? A A 3 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 105 N3 ? ? A A 4 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 105 O4 ? ? A A 4 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 104 N3 ? ? A A 5 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 104 O4 ? ? A A 5 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N2 ? ? ? 1_555 A A 72 N1 ? ? A G 6 A A 72 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog11 hydrog ? ? A G 6 N3 ? ? ? 1_555 A A 72 N6 ? ? A G 6 A A 72 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 55 N1 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 55 N6 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 53 N1 ? ? A U 9 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 53 N6 ? ? A U 9 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 11 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 11 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 47 N7 ? ? A U 13 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog28 hydrog ? ? A U 13 O2 ? ? ? 1_555 A A 47 N6 ? ? A U 13 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 46 N3 ? ? A A 14 A A 46 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 88 N3 ? ? A G 15 A A 88 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A U 19 O4 ? ? A G 17 A U 19 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 43 O4 ? ? A G 17 A U 43 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 85 N1 ? ? A G 17 A A 85 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog40 hydrog ? ? A U 18 O2 ? ? ? 1_555 A C 20 N4 ? ? A U 18 A C 20 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog41 hydrog ? ? A U 19 O4 ? ? ? 1_555 A U 43 N3 ? ? A U 19 A U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog42 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 21 A G 37 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog46 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 22 N2 ? ? ? 1_555 A U 40 O4 ? ? A G 22 A U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog53 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 28 O2 ? ? ? 1_555 A G 31 N1 ? ? A U 28 A G 31 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog68 hydrog ? ? A G 37 N1 ? ? ? 1_555 A G 41 O6 ? ? A G 37 A G 41 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog69 hydrog ? ? A G 37 N2 ? ? ? 1_555 A G 41 N7 ? ? A G 37 A G 41 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog70 hydrog ? ? A G 48 N2 ? ? ? 1_555 A A 74 N3 ? ? A G 48 A A 74 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A G 56 N1 ? ? ? 1_555 A U 71 O2 ? ? A G 56 A U 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? A G 56 O6 ? ? ? 1_555 A U 71 N3 ? ? A G 56 A U 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 70 N3 ? ? A A 57 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 70 O4 ? ? A A 57 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 59 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 59 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 59 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 60 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 60 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 60 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A A 61 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A A 61 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A U 62 O2 ? ? ? 1_555 A G 65 N2 ? ? A U 62 A G 65 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog87 hydrog ? ? A C 73 N3 ? ? ? 1_555 A G 94 N1 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 73 N4 ? ? ? 1_555 A G 94 O6 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 94 N2 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 103 N2 ? ? A C 73 A G 103 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog91 hydrog ? ? A C 75 N3 ? ? ? 1_555 A G 98 N1 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 75 N4 ? ? ? 1_555 A G 98 O6 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 75 O2 ? ? ? 1_555 A G 98 N2 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 76 N3 ? ? ? 1_555 A G 97 N1 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 76 N4 ? ? ? 1_555 A G 97 O6 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 76 O2 ? ? ? 1_555 A G 97 N2 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 77 N1 ? ? ? 1_555 A C 96 N3 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 77 N2 ? ? ? 1_555 A C 96 O2 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 77 O6 ? ? ? 1_555 A C 96 N4 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 78 O6 ? ? ? 1_555 A G 95 N1 ? ? A G 78 A G 95 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog101 hydrog ? ? A A 79 N1 ? ? ? 1_555 A A 93 N6 ? ? A A 79 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog102 hydrog ? ? A A 79 N6 ? ? ? 1_555 A A 93 N1 ? ? A A 79 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog103 hydrog ? ? A G 80 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A G 80 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A G 80 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 81 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 81 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A G 81 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A G 82 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A G 82 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A G 82 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A A 83 N1 ? ? ? 1_555 A A 88 N6 ? ? A A 83 A A 88 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog113 hydrog ? ? A A 83 N6 ? ? ? 1_555 A A 88 N7 ? ? A A 83 A A 88 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog114 hydrog ? ? A U 84 N3 ? ? ? 1_555 A A 87 N7 ? ? A U 84 A A 87 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog115 hydrog ? ? A U 84 O2 ? ? ? 1_555 A A 87 N6 ? ? A U 84 A A 87 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog116 hydrog ? ? A G 99 N2 ? ? ? 1_555 A A 101 N7 ? ? A G 99 A A 101 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 6DLT _atom_sites.fract_transf_matrix[1][1] 0.011966 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007479 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011019 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015898 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 A 34 34 34 A A A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 U 43 43 43 U U A . n A 1 44 C 44 44 44 C C A . n A 1 45 C 45 45 45 C C A . n A 1 46 A 46 46 46 A A A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 C 52 52 52 C C A . n A 1 53 A 53 53 53 A A A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 G 56 56 56 G G A . n A 1 57 A 57 57 57 A A A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 U 62 62 62 U U A . n A 1 63 U 63 63 63 U U A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 U 66 66 66 U U A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 U 70 70 70 U U A . n A 1 71 U 71 71 71 U U A . n A 1 72 A 72 72 72 A A A . n A 1 73 C 73 73 73 C C A . n A 1 74 A 74 74 74 A A A . n A 1 75 C 75 75 75 C C A . n A 1 76 C 76 76 76 C C A . n A 1 77 G 77 77 77 G G A . n A 1 78 G 78 78 78 G G A . n A 1 79 A 79 79 79 A A A . n A 1 80 G 80 80 80 G G A . n A 1 81 G 81 81 81 G G A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 U 84 84 84 U U A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 A 88 88 88 A A A . n A 1 89 G 89 89 89 G G A . n A 1 90 C 90 90 90 C C A . n A 1 91 C 91 91 91 C C A . n A 1 92 C 92 92 92 C C A . n A 1 93 A 93 93 93 A A A . n A 1 94 G 94 94 94 G G A . n A 1 95 G 95 95 95 G G A . n A 1 96 C 96 96 96 C C A . n A 1 97 G 97 97 97 G G A . n A 1 98 G 98 98 98 G G A . n A 1 99 G 99 99 99 G G A . n A 1 100 U 100 100 100 U U A . n A 1 101 A 101 101 101 A A A . n A 1 102 G 102 102 102 G G A . n A 1 103 G 103 103 103 G G A . n A 1 104 U 104 104 104 U U A . n A 1 105 U 105 105 105 U U A . n A 1 106 U 106 106 106 U U A . n A 1 107 CCC 107 107 107 CCC CCC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 1 MG MG A . C 2 MG 1 202 2 MG MG A . D 2 MG 1 203 3 MG MG A . E 3 NA 1 204 4 NA NA A . F 3 NA 1 205 5 NA NA A . G 3 NA 1 206 6 NA NA A . H 4 PRP 1 207 503 PRP PRP A . I 5 HOH 1 301 13 HOH HOH A . I 5 HOH 2 302 11 HOH HOH A . I 5 HOH 3 303 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id NA _pdbx_struct_special_symmetry.auth_seq_id 204 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id NA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A G 48 ? A G 48 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OP1 ? A C 90 ? A C 90 ? 1_555 83.8 ? 2 OP1 ? A G 48 ? A G 48 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OP2 ? A C 91 ? A C 91 ? 1_555 82.0 ? 3 OP1 ? A C 90 ? A C 90 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OP2 ? A C 91 ? A C 91 ? 1_555 80.5 ? 4 OP2 ? A G 48 ? A G 48 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OP1 ? A C 91 ? A C 91 ? 1_555 73.5 ? 5 O2 ? A U 49 ? A U 49 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 75 ? A C 75 ? 1_555 62.4 ? 6 O2 ? A U 49 ? A U 49 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O2P A H PRP . ? A PRP 207 ? 1_555 69.6 ? 7 OP2 ? A C 75 ? A C 75 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O2P A H PRP . ? A PRP 207 ? 1_555 82.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2020-01-01 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2022-04-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' Advisory 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_database_PDB_obs_spr 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_nonpoly 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_site 9 3 'Structure model' struct_site_gen 10 4 'Structure model' chem_comp 11 4 'Structure model' database_2 12 4 'Structure model' pdbx_database_PDB_obs_spr # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_chem_comp.mon_nstd_flag' 3 3 'Structure model' '_chem_comp.name' 4 3 'Structure model' '_chem_comp.type' 5 3 'Structure model' '_entity.pdbx_description' 6 3 'Structure model' '_pdbx_entity_nonpoly.name' 7 3 'Structure model' '_struct_conn.conn_type_id' 8 3 'Structure model' '_struct_conn.id' 9 3 'Structure model' '_struct_conn.pdbx_dist_value' 10 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 12 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 17 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 21 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 22 4 'Structure model' '_chem_comp.pdbx_synonyms' 23 4 'Structure model' '_database_2.pdbx_DOI' 24 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DLT 'double helix' 6DLT 'a-form double helix' 6DLT 'hairpin loop' 6DLT tetraloop 6DLT 'bulge loop' 6DLT 'mismatched base pair' 6DLT 'quadruple helix' 6DLT 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A CCC 107 1_555 -0.038 0.611 0.125 5.059 -7.518 -1.402 1 A_G2:CCC107_A A 2 ? A 107 ? 19 1 1 A A 3 1_555 A U 106 1_555 -0.344 -0.173 0.166 4.786 -17.518 -11.229 2 A_A3:U106_A A 3 ? A 106 ? 20 1 1 A A 4 1_555 A U 105 1_555 0.125 -0.287 0.517 9.657 -12.322 -2.651 3 A_A4:U105_A A 4 ? A 105 ? 20 1 1 A A 5 1_555 A U 104 1_555 -0.175 -0.216 0.179 3.376 -23.491 4.326 4 A_A5:U104_A A 5 ? A 104 ? 20 1 1 A A 72 1_555 A G 6 1_555 -3.824 3.719 -0.689 21.708 11.038 63.779 5 A_A72:G6_A A 72 ? A 6 ? 10 6 1 A C 73 1_555 A G 94 1_555 -0.797 0.255 0.194 25.625 -15.412 -0.894 6 A_C73:G94_A A 73 ? A 94 ? 19 1 1 A A 74 1_555 A G 48 1_555 2.792 7.052 -1.598 52.373 12.729 150.069 7 A_A74:G48_A A 74 ? A 48 ? ? 6 1 A G 31 1_555 A U 28 1_555 -0.202 4.788 -1.010 17.753 0.068 117.336 8 A_G31:U28_A A 31 ? A 28 ? ? 6 1 A G 32 1_555 A C 27 1_555 -0.111 -0.180 -0.296 -3.088 -13.504 5.240 9 A_G32:C27_A A 32 ? A 27 ? 19 1 1 A C 33 1_555 A G 26 1_555 0.773 -0.486 -0.023 1.758 -9.303 -6.870 10 A_C33:G26_A A 33 ? A 26 ? 19 1 1 A A 34 1_555 A U 25 1_555 0.055 -0.288 0.141 3.327 -14.845 -2.505 11 A_A34:U25_A A 34 ? A 25 ? 20 1 1 A C 35 1_555 A G 24 1_555 0.466 -0.371 0.005 -0.558 -13.622 -4.841 12 A_C35:G24_A A 35 ? A 24 ? 19 1 1 A G 36 1_555 A C 23 1_555 0.178 -0.417 0.476 -3.713 -22.037 -2.190 13 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A C 39 1_555 A G 22 1_555 0.134 0.091 -0.238 -1.010 -13.314 11.187 14 A_C39:G22_A A 39 ? A 22 ? 19 1 1 A G 41 1_555 A C 21 1_555 -0.790 -0.240 -0.630 0.056 -7.234 3.452 15 A_G41:C21_A A 41 ? A 21 ? 19 1 1 A G 42 1_555 A C 20 1_555 -0.157 -0.286 -0.635 -7.697 4.763 -2.381 16 A_G42:C20_A A 42 ? A 20 ? 19 1 1 A U 43 1_555 A U 19 1_555 2.431 -1.293 -1.279 -13.258 -8.777 -19.536 17 A_U43:U19_A A 43 ? A 19 ? ? ? 1 A G 17 1_555 A A 85 1_555 3.763 4.125 1.415 -24.567 -53.124 86.712 18 A_G17:A85_A A 17 ? A 85 ? ? ? 1 A C 44 1_555 A G 16 1_555 -0.179 0.186 -0.345 19.273 -24.012 0.315 19 A_C44:G16_A A 44 ? A 16 ? 19 1 1 A C 45 1_555 A G 15 1_555 0.311 -0.358 -0.324 12.530 -8.914 -0.904 20 A_C45:G15_A A 45 ? A 15 ? 19 1 1 A A 46 1_555 A A 14 1_555 6.220 -4.323 -0.083 0.213 -18.201 -20.019 21 A_A46:A14_A A 46 ? A 14 ? ? 10 1 A A 47 1_555 A U 13 1_555 -3.888 -1.961 -0.369 8.074 -14.129 -95.986 22 A_A47:U13_A A 47 ? A 13 ? 24 4 1 A G 50 1_555 A C 12 1_555 0.358 0.026 0.361 1.801 -10.979 1.960 23 A_G50:C12_A A 50 ? A 12 ? 19 1 1 A A 51 1_555 A U 11 1_555 -0.457 -0.095 -0.011 -3.727 -13.021 3.672 24 A_A51:U11_A A 51 ? A 11 ? 20 1 1 A C 52 1_555 A G 10 1_555 0.522 -0.041 0.071 11.000 -12.202 6.153 25 A_C52:G10_A A 52 ? A 10 ? 19 1 1 A A 53 1_555 A U 9 1_555 0.066 -0.141 -0.229 3.312 -8.775 -6.859 26 A_A53:U9_A A 53 ? A 9 ? 20 1 1 A C 54 1_555 A G 8 1_555 -0.228 -0.044 -0.491 15.964 -10.365 -2.938 27 A_C54:G8_A A 54 ? A 8 ? 19 1 1 A A 55 1_555 A U 7 1_555 -0.007 0.065 0.683 5.719 -1.954 7.740 28 A_A55:U7_A A 55 ? A 7 ? 20 1 1 A G 56 1_555 A U 71 1_555 -2.523 -0.685 0.144 8.991 -7.850 -3.999 29 A_G56:U71_A A 56 ? A 71 ? 28 1 1 A A 57 1_555 A U 70 1_555 -0.491 -0.180 -0.245 4.688 -24.028 4.760 30 A_A57:U70_A A 57 ? A 70 ? 20 1 1 A C 58 1_555 A G 69 1_555 0.263 -0.296 -0.110 1.891 -15.124 -3.350 31 A_C58:G69_A A 58 ? A 69 ? 19 1 1 A G 59 1_555 A C 68 1_555 0.141 -0.060 0.055 -1.620 -7.255 3.460 32 A_G59:C68_A A 59 ? A 68 ? 19 1 1 A C 60 1_555 A G 67 1_555 -0.120 0.123 -0.366 8.015 -9.537 1.211 33 A_C60:G67_A A 60 ? A 67 ? 19 1 1 A A 61 1_555 A U 66 1_555 0.010 0.038 -0.248 1.857 -5.507 -2.442 34 A_A61:U66_A A 61 ? A 66 ? 20 1 1 A U 62 1_555 A G 65 1_555 -0.103 -5.824 -0.066 -15.972 2.698 -122.508 35 A_U62:G65_A A 62 ? A 65 ? ? 6 1 A A 87 1_555 A U 84 1_555 -3.995 -1.828 -1.299 -23.811 -18.545 -103.805 36 A_A87:U84_A A 87 ? A 84 ? 24 4 1 A A 88 1_555 A A 83 1_555 -4.418 0.947 -0.126 3.947 -9.788 -99.660 37 A_A88:A83_A A 88 ? A 83 ? 5 4 1 A C 90 1_555 A G 82 1_555 -0.192 -0.329 0.072 15.948 -6.833 -4.807 38 A_C90:G82_A A 90 ? A 82 ? 19 1 1 A C 91 1_555 A G 81 1_555 0.299 -0.308 -0.375 6.994 -16.416 0.469 39 A_C91:G81_A A 91 ? A 81 ? 19 1 1 A C 92 1_555 A G 80 1_555 0.316 -0.097 0.026 -3.117 -3.348 -0.670 40 A_C92:G80_A A 92 ? A 80 ? 19 1 1 A A 93 1_555 A A 79 1_555 -1.437 -1.046 0.048 10.791 -1.868 175.975 41 A_A93:A79_A A 93 ? A 79 ? 1 2 1 A G 95 1_555 A G 78 1_555 3.806 1.199 -0.415 13.229 -12.293 -65.287 42 A_G95:G78_A A 95 ? A 78 ? ? 1 1 A C 96 1_555 A G 77 1_555 -0.151 -0.160 0.029 3.348 -8.603 1.705 43 A_C96:G77_A A 96 ? A 77 ? 19 1 1 A G 97 1_555 A C 76 1_555 0.038 -0.237 -0.074 -1.254 -10.093 0.298 44 A_G97:C76_A A 97 ? A 76 ? 19 1 1 A G 98 1_555 A C 75 1_555 -0.074 -0.060 -0.782 -31.909 -27.999 3.096 45 A_G98:C75_A A 98 ? A 75 ? 19 1 1 A G 99 1_555 A A 101 1_555 6.888 2.865 0.941 -62.574 10.418 6.727 46 A_G99:A101_A A 99 ? A 101 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A CCC 107 1_555 A A 3 1_555 A U 106 1_555 -0.720 -1.387 3.217 -5.327 9.764 28.736 -4.404 0.381 2.701 18.807 10.260 30.771 1 AA_G2A3:U106CCC107_AA A 2 ? A 107 ? A 3 ? A 106 ? 1 A A 3 1_555 A U 106 1_555 A A 4 1_555 A U 105 1_555 0.317 -1.335 2.985 -3.189 1.608 36.085 -2.349 -0.912 2.887 2.587 5.132 36.255 2 AA_A3A4:U105U106_AA A 3 ? A 106 ? A 4 ? A 105 ? 1 A A 4 1_555 A U 105 1_555 A A 5 1_555 A U 104 1_555 0.572 -1.691 3.247 4.588 9.698 29.053 -4.908 -0.250 2.618 18.552 -8.776 30.931 3 AA_A4A5:U104U105_AA A 4 ? A 105 ? A 5 ? A 104 ? 1 A A 5 1_555 A U 104 1_555 A A 72 1_555 A G 6 1_555 0.769 -0.495 3.553 10.719 4.388 100.572 -0.394 -0.319 3.585 2.846 -6.951 101.057 4 AA_A5A72:G6U104_AA A 5 ? A 104 ? A 72 ? A 6 ? 1 A A 72 1_555 A G 6 1_555 A C 73 1_555 A G 94 1_555 1.982 1.232 2.697 1.390 -11.466 78.148 1.223 -1.529 2.556 -9.049 -1.097 78.862 5 AA_A72C73:G94G6_AA A 72 ? A 6 ? A 73 ? A 94 ? 1 A C 73 1_555 A G 94 1_555 A A 74 1_555 A G 48 1_555 -0.349 -2.529 4.525 -5.767 3.225 -20.286 4.947 -4.322 4.592 -8.857 -15.841 -21.324 6 AA_C73A74:G48G94_AA A 73 ? A 94 ? A 74 ? A 48 ? 1 A G 31 1_555 A U 28 1_555 A G 32 1_555 A C 27 1_555 2.209 3.273 1.485 -105.959 126.971 -177.416 -1.649 1.094 1.460 -63.487 -52.981 -179.671 7 AA_G31G32:C27U28_AA A 31 ? A 28 ? A 32 ? A 27 ? 1 A G 32 1_555 A C 27 1_555 A C 33 1_555 A G 26 1_555 -0.852 -1.703 3.139 -4.661 1.126 34.627 -3.001 0.737 3.168 1.881 7.785 34.947 8 AA_G32C33:G26C27_AA A 32 ? A 27 ? A 33 ? A 26 ? 1 A C 33 1_555 A G 26 1_555 A A 34 1_555 A U 25 1_555 -0.504 -1.598 3.116 -0.415 12.647 27.788 -5.190 0.889 2.203 24.771 0.812 30.482 9 AA_C33A34:U25G26_AA A 33 ? A 26 ? A 34 ? A 25 ? 1 A A 34 1_555 A U 25 1_555 A C 35 1_555 A G 24 1_555 -0.016 -1.172 3.381 0.610 12.564 33.985 -3.612 0.109 2.788 20.639 -1.002 36.174 10 AA_A34C35:G24U25_AA A 34 ? A 25 ? A 35 ? A 24 ? 1 A C 35 1_555 A G 24 1_555 A G 36 1_555 A C 23 1_555 0.639 -1.761 3.153 0.605 12.871 31.763 -4.753 -1.004 2.298 22.400 -1.054 34.215 11 AA_C35G36:C23G24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 36 1_555 A C 23 1_555 A C 39 1_555 A G 22 1_555 -1.664 -0.936 2.828 4.545 9.093 51.980 -1.533 2.109 2.500 10.263 -5.130 52.896 12 AA_G36C39:G22C23_AA A 36 ? A 23 ? A 39 ? A 22 ? 1 A C 39 1_555 A G 22 1_555 A G 41 1_555 A C 21 1_555 -2.811 -1.039 3.379 6.626 13.016 43.881 -2.366 4.117 2.560 16.871 -8.589 46.134 13 AA_C39G41:C21G22_AA A 39 ? A 22 ? A 41 ? A 21 ? 1 A G 41 1_555 A C 21 1_555 A G 42 1_555 A C 20 1_555 -1.345 -1.668 3.393 -5.977 5.962 40.539 -3.020 1.244 3.284 8.493 8.515 41.372 14 AA_G41G42:C20C21_AA A 41 ? A 21 ? A 42 ? A 20 ? 1 A G 42 1_555 A C 20 1_555 A U 43 1_555 A U 19 1_555 -0.698 -2.348 3.716 6.428 10.430 39.852 -4.446 1.686 2.897 14.881 -9.171 41.619 15 AA_G42U43:U19C20_AA A 42 ? A 20 ? A 43 ? A 19 ? 1 A U 43 1_555 A U 19 1_555 A G 17 1_555 A A 85 1_555 -0.812 -3.739 -1.830 -118.316 -110.474 155.075 -1.979 0.522 -1.117 -55.380 59.312 176.104 16 AA_U43G17:A85U19_AA A 43 ? A 19 ? A 17 ? A 85 ? 1 A G 17 1_555 A A 85 1_555 A C 44 1_555 A G 16 1_555 4.445 -1.598 1.034 151.820 37.779 87.491 -1.042 -1.305 3.531 19.752 -79.377 163.045 17 AA_G17C44:G16A85_AA A 17 ? A 85 ? A 44 ? A 16 ? 1 A C 44 1_555 A G 16 1_555 A C 45 1_555 A G 15 1_555 -0.318 -2.044 3.482 -3.196 8.958 34.826 -4.564 0.063 2.901 14.632 5.220 36.062 18 AA_C44C45:G15G16_AA A 44 ? A 16 ? A 45 ? A 15 ? 1 A C 45 1_555 A G 15 1_555 A A 46 1_555 A A 14 1_555 -1.581 -1.114 3.860 3.349 14.143 56.791 -1.979 1.817 3.428 14.607 -3.458 58.471 19 AA_C45A46:A14G15_AA A 45 ? A 15 ? A 46 ? A 14 ? 1 A A 46 1_555 A A 14 1_555 A A 47 1_555 A U 13 1_555 -4.475 -0.101 3.273 -4.975 2.485 -3.668 -2.802 -45.854 -1.501 -25.304 -50.653 -6.661 20 AA_A46A47:U13A14_AA A 46 ? A 14 ? A 47 ? A 13 ? 1 A A 47 1_555 A U 13 1_555 A G 50 1_555 A C 12 1_555 3.156 -2.518 3.336 2.860 3.855 81.287 -2.031 -2.346 3.326 2.957 -2.193 81.404 21 AA_A47G50:C12U13_AA A 47 ? A 13 ? A 50 ? A 12 ? 1 A G 50 1_555 A C 12 1_555 A A 51 1_555 A U 11 1_555 -0.748 -2.485 3.186 1.077 10.552 24.377 -7.680 1.861 1.927 23.611 -2.410 26.553 22 AA_G50A51:U11C12_AA A 50 ? A 12 ? A 51 ? A 11 ? 1 A A 51 1_555 A U 11 1_555 A C 52 1_555 A G 10 1_555 0.294 -1.143 2.895 0.289 4.716 35.949 -2.408 -0.438 2.731 7.601 -0.465 36.248 23 AA_A51C52:G10U11_AA A 51 ? A 11 ? A 52 ? A 10 ? 1 A C 52 1_555 A G 10 1_555 A A 53 1_555 A U 9 1_555 -0.370 -1.756 3.476 3.731 8.688 26.419 -5.622 1.622 2.696 18.282 -7.851 28.031 24 AA_C52A53:U9G10_AA A 52 ? A 10 ? A 53 ? A 9 ? 1 A A 53 1_555 A U 9 1_555 A C 54 1_555 A G 8 1_555 0.583 -1.405 2.977 3.911 2.841 30.945 -3.087 -0.415 2.890 5.283 -7.275 31.311 25 AA_A53C54:G8U9_AA A 53 ? A 9 ? A 54 ? A 8 ? 1 A C 54 1_555 A G 8 1_555 A A 55 1_555 A U 7 1_555 1.144 -2.295 3.414 -9.248 3.826 30.161 -4.865 -3.709 2.652 7.111 17.188 31.742 26 AA_C54A55:U7G8_AA A 54 ? A 8 ? A 55 ? A 7 ? 1 A A 55 1_555 A U 7 1_555 A G 56 1_555 A U 71 1_555 2.650 -1.077 3.239 1.153 -1.895 49.119 -1.151 -3.099 3.333 -2.278 -1.387 49.166 27 AA_A55G56:U71U7_AA A 55 ? A 7 ? A 56 ? A 71 ? 1 A G 56 1_555 A U 71 1_555 A A 57 1_555 A U 70 1_555 -0.154 -1.050 3.333 -3.622 11.553 42.190 -2.487 -0.132 2.963 15.667 4.912 43.816 28 AA_G56A57:U70U71_AA A 56 ? A 71 ? A 57 ? A 70 ? 1 A A 57 1_555 A U 70 1_555 A C 58 1_555 A G 69 1_555 -0.409 -1.398 3.289 -5.077 4.956 37.369 -2.769 -0.010 3.113 7.650 7.836 38.013 29 AA_A57C58:G69U70_AA A 57 ? A 70 ? A 58 ? A 69 ? 1 A C 58 1_555 A G 69 1_555 A G 59 1_555 A C 68 1_555 -0.085 -1.642 3.189 -0.663 8.669 30.852 -4.398 0.046 2.644 15.903 1.216 32.025 30 AA_C58G59:C68G69_AA A 58 ? A 69 ? A 59 ? A 68 ? 1 A G 59 1_555 A C 68 1_555 A C 60 1_555 A G 67 1_555 -0.035 -1.122 3.073 3.730 0.894 30.379 -2.290 0.756 3.014 1.697 -7.083 30.614 31 AA_G59C60:G67C68_AA A 59 ? A 68 ? A 60 ? A 67 ? 1 A C 60 1_555 A G 67 1_555 A A 61 1_555 A U 66 1_555 0.731 -1.455 3.390 3.062 6.360 32.906 -3.559 -0.760 3.116 11.069 -5.330 33.634 32 AA_C60A61:U66G67_AA A 60 ? A 67 ? A 61 ? A 66 ? 1 A A 61 1_555 A U 66 1_555 A U 62 1_555 A G 65 1_555 -1.257 -0.809 3.781 13.063 8.445 99.229 -0.677 1.051 3.585 5.519 -8.537 100.123 33 AA_A61U62:G65U66_AA A 61 ? A 66 ? A 62 ? A 65 ? 1 A A 87 1_555 A U 84 1_555 A A 88 1_555 A A 83 1_555 -0.694 -0.573 2.572 -7.549 -6.886 29.210 0.037 0.082 2.725 -13.157 14.424 30.909 34 AA_A87A88:A83U84_AA A 87 ? A 84 ? A 88 ? A 83 ? 1 A A 88 1_555 A A 83 1_555 A C 90 1_555 A G 82 1_555 3.336 -2.224 2.923 -1.747 -3.858 67.408 -1.868 -3.062 2.954 -3.472 1.573 67.526 35 AA_A88C90:G82A83_AA A 88 ? A 83 ? A 90 ? A 82 ? 1 A C 90 1_555 A G 82 1_555 A C 91 1_555 A G 81 1_555 0.131 -2.175 3.346 1.506 5.080 39.643 -3.754 -0.022 3.058 7.450 -2.209 39.981 36 AA_C90C91:G81G82_AA A 90 ? A 82 ? A 91 ? A 81 ? 1 A C 91 1_555 A G 81 1_555 A C 92 1_555 A G 80 1_555 -0.207 -2.333 3.529 -0.559 8.252 28.217 -6.338 0.291 2.754 16.483 1.117 29.380 37 AA_C91C92:G80G81_AA A 91 ? A 81 ? A 92 ? A 80 ? 1 A C 92 1_555 A G 80 1_555 A A 93 1_555 A A 79 1_555 -0.304 -3.682 0.652 -143.838 100.192 -47.773 1.357 -0.850 1.960 -50.896 -73.068 -175.697 38 AA_C92A93:A79G80_AA A 92 ? A 80 ? A 93 ? A 79 ? 1 A A 93 1_555 A A 79 1_555 A G 95 1_555 A G 78 1_555 -1.571 -3.120 -0.127 106.218 -138.687 125.418 -1.516 0.819 0.584 -69.578 -53.288 177.566 39 AA_A93G95:G78A79_AA A 93 ? A 79 ? A 95 ? A 78 ? 1 A G 95 1_555 A G 78 1_555 A C 96 1_555 A G 77 1_555 2.772 -2.636 3.300 -6.621 2.942 22.035 -7.411 -8.814 2.027 7.444 16.751 23.182 40 AA_G95C96:G77G78_AA A 95 ? A 78 ? A 96 ? A 77 ? 1 A C 96 1_555 A G 77 1_555 A G 97 1_555 A C 76 1_555 0.233 -1.680 3.290 -3.078 6.386 36.409 -3.464 -0.763 2.935 10.102 4.869 37.070 41 AA_C96G97:C76G77_AA A 96 ? A 77 ? A 97 ? A 76 ? 1 A G 97 1_555 A C 76 1_555 A G 98 1_555 A C 75 1_555 0.314 -2.122 3.983 7.380 15.071 32.408 -5.697 0.623 2.766 25.020 -12.252 36.392 42 AA_G97G98:C75C76_AA A 97 ? A 76 ? A 98 ? A 75 ? 1 A G 98 1_555 A C 75 1_555 A G 99 1_555 A A 101 1_555 0.391 -2.005 2.849 8.690 9.231 50.648 -2.793 0.035 2.503 10.601 -9.979 52.109 43 AA_G98G99:A101C75_AA A 98 ? A 75 ? A 99 ? A 101 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM112940 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' F31GM119357 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' T32GM88118 3 # _pdbx_chem_comp_identifier.comp_id PRP _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-Ribf1PO35PO3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PRP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PRP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose PRP 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #