HEADER VIRAL PROTEIN 23-JUL-18 6E5X TITLE CRYSTAL STRUCTURE OF EBOLA VIRUS VP30 C-TERMINUS/RBBP6 PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINOR NUCLEOPROTEIN VP30; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 140-266); COMPND 5 SYNONYM: TRANSCRIPTION ACTIVATOR VP30; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RBBP6; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 554-568; COMPND 11 SYNONYM: PROLIFERATION POTENTIAL-RELATED PROTEIN, PROTEIN P2P-R, COMPND 12 RING-TYPE E3 UBIQUITIN TRANSFERASE RBBP6, RETINOBLASTOMA-BINDING Q COMPND 13 PROTEIN 1, RBQ-1, RETINOBLASTOMA-BINDING PROTEIN 6, P53-ASSOCIATED COMPND 14 CELLULAR PROTEIN OF TESTIS; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS (STRAIN KIKWIT-95); SOURCE 3 ORGANISM_COMMON: ZEBOV; SOURCE 4 ORGANISM_TAXID: 128951; SOURCE 5 STRAIN: KIKWIT-95; SOURCE 6 GENE: VP30; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.LIU,G.I.SMALL,D.W.LEUNG,G.K.AMARASINGHE REVDAT 4 11-OCT-23 6E5X 1 LINK REVDAT 3 18-DEC-19 6E5X 1 REMARK REVDAT 2 20-FEB-19 6E5X 1 JRNL REVDAT 1 12-DEC-18 6E5X 0 JRNL AUTH J.BATRA,J.F.HULTQUIST,D.LIU,O.SHTANKO,J.VON DOLLEN, JRNL AUTH 2 L.SATKAMP,G.M.JANG,P.LUTHRA,T.M.SCHWARZ,G.I.SMALL,E.ARNETT, JRNL AUTH 3 M.ANANTPADMA,A.REYES,D.W.LEUNG,R.KAAKE,P.HAAS,C.B.SCHMIDT, JRNL AUTH 4 L.S.SCHLESINGER,D.J.LACOUNT,R.A.DAVEY,G.K.AMARASINGHE, JRNL AUTH 5 C.F.BASLER,N.J.KROGAN JRNL TITL PROTEIN INTERACTION MAPPING IDENTIFIES RBBP6 AS A NEGATIVE JRNL TITL 2 REGULATOR OF EBOLA VIRUS REPLICATION. JRNL REF CELL V. 175 1917 2018 JRNL REFN ISSN 1097-4172 JRNL PMID 30550789 JRNL DOI 10.1016/J.CELL.2018.08.044 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1317 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1869 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.729 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1131 ; 0.002 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1070 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1541 ; 0.659 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2508 ; 0.845 ; 1.618 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 138 ; 4.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;32.867 ;21.346 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 195 ;10.907 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.034 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.038 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1224 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 192 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 558 ; 3.551 ; 3.011 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 557 ; 3.525 ; 2.999 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 694 ; 5.191 ; 4.476 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 695 ; 5.196 ; 4.492 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 573 ; 4.974 ; 3.403 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 574 ; 4.971 ; 3.416 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 848 ; 7.507 ; 4.954 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4705 ; 8.699 ;56.024 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4591 ; 8.633 ;55.633 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6E5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.70 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5VAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE, PH 6.5, 18% W/V PEG8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.35500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.80000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.03250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.80000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.67750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 119.03250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.67750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.35500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 554 REMARK 465 VAL B 555 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 259 OG REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 604 O HOH B 606 0.88 REMARK 500 O HOH A 422 O HOH A 449 1.52 REMARK 500 OE1 GLN A 248 O HOH A 401 1.62 REMARK 500 O HOH A 411 O HOH A 514 1.68 REMARK 500 O HOH A 523 O HOH A 528 1.70 REMARK 500 O HOH A 429 O HOH A 514 1.76 REMARK 500 NZ LYS A 180 O HOH A 402 1.76 REMARK 500 O HOH A 470 O HOH A 523 1.79 REMARK 500 O HOH A 503 O HOH A 513 1.84 REMARK 500 O HOH A 452 O HOH A 453 1.98 REMARK 500 O HOH A 510 O HOH A 523 1.99 REMARK 500 CD GLN A 248 O HOH A 401 2.08 REMARK 500 O HOH A 438 O HOH A 522 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 419 O HOH A 421 6455 1.15 REMARK 500 O HOH A 406 O HOH A 481 6455 1.20 REMARK 500 O HOH A 414 O HOH A 507 6555 1.60 REMARK 500 SG CYS A 251 O HOH A 402 8555 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 254 119.82 -36.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 155 O REMARK 620 2 GLN A 229 O 96.1 REMARK 620 3 ASN A 244 OD1 132.2 78.3 REMARK 620 4 HOH A 473 O 75.0 67.4 139.0 REMARK 620 5 HOH A 474 O 82.6 23.0 74.4 81.7 REMARK 620 6 HOH A 484 O 75.6 130.7 73.3 147.1 109.0 REMARK 620 7 HOH A 511 O 83.1 155.0 120.4 88.4 164.3 73.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 DBREF 6E5X A 140 266 UNP Q77DJ5 VP30_EBOZ5 140 266 DBREF 6E5X B 554 568 UNP Q7Z6E9 RBBP6_HUMAN 554 568 SEQRES 1 A 127 PRO LYS ILE THR LEU LEU THR LEU ILE LYS THR ALA GLU SEQRES 2 A 127 HIS TRP ALA ARG GLN ASP ILE ARG THR ILE GLU ASP SER SEQRES 3 A 127 LYS LEU ARG ALA LEU LEU THR LEU CYS ALA VAL MET THR SEQRES 4 A 127 ARG LYS PHE SER LYS SER GLN LEU SER LEU LEU CYS GLU SEQRES 5 A 127 THR HIS LEU ARG ARG GLU GLY LEU GLY GLN ASP GLN ALA SEQRES 6 A 127 GLU PRO VAL LEU GLU VAL TYR GLN ARG LEU HIS SER ASP SEQRES 7 A 127 LYS GLY GLY SER PHE GLU ALA ALA LEU TRP GLN GLN TRP SEQRES 8 A 127 ASP ARG GLN SER LEU ILE MET PHE ILE THR ALA PHE LEU SEQRES 9 A 127 ASN ILE ALA LEU GLN LEU PRO CYS GLU SER SER ALA VAL SEQRES 10 A 127 VAL VAL SER GLY LEU ARG THR LEU VAL PRO SEQRES 1 B 15 PRO VAL PHE VAL PRO VAL PRO PRO PRO PRO LEU TYR PRO SEQRES 2 B 15 PRO PRO HET CA A 301 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *149(H2 O) HELIX 1 AA1 THR A 143 ARG A 156 1 14 HELIX 2 AA2 GLN A 157 ILE A 162 5 6 HELIX 3 AA3 GLU A 163 ARG A 179 1 17 HELIX 4 AA4 LYS A 180 PHE A 181 5 2 HELIX 5 AA5 SER A 182 SER A 184 5 3 HELIX 6 AA6 GLN A 185 GLU A 197 1 13 HELIX 7 AA7 GLY A 200 ASP A 202 5 3 HELIX 8 AA8 GLN A 203 SER A 216 1 14 HELIX 9 AA9 GLY A 220 TRP A 230 1 11 HELIX 10 AB1 ASP A 231 ALA A 246 1 16 HELIX 11 AB2 SER A 254 THR A 263 1 10 LINK O ALA A 155 CA CA A 301 1555 1555 2.32 LINK O GLN A 229 CA CA A 301 1555 6555 2.35 LINK OD1 ASN A 244 CA CA A 301 1555 1555 2.33 LINK CA CA A 301 O HOH A 473 1555 1555 2.46 LINK CA CA A 301 O HOH A 474 1555 1555 2.38 LINK CA CA A 301 O HOH A 484 1555 1555 2.48 LINK CA CA A 301 O HOH A 511 1555 6455 2.45 SITE 1 AC1 7 ALA A 155 GLN A 229 ASN A 244 HOH A 473 SITE 2 AC1 7 HOH A 474 HOH A 484 HOH A 511 CRYST1 45.600 45.600 158.710 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006301 0.00000