HEADER CELL CYCLE 24-NOV-17 6F2F TITLE CRYSTAL STRUCTURE OF PROTEASE 1 FROM PYROCOCCUS HORIKOSHII CO- TITLE 2 CYSTALLIZED IN PRESENCE OF 10 MM TB-XO4 AND AMMONIUM SULFATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEGLYCASE PH1704; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: INTRACELLULAR PROTEASE PH1704, PROTEASE 1; COMPND 5 EC: 3.5.1.124,3.4.22.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: PH1704; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LANTHANIDE COMPLEXES, TB-XO4, CRYSTALLOPHORE, PHASING, NUCLEATION, KEYWDS 2 CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.ENGILBERGE,F.RIOBE,S.DI PIETRO,B.FRANZETTI,E.GIRARD,E.DUMONT, AUTHOR 2 O.MAURY REVDAT 5 17-JAN-24 6F2F 1 LINK REVDAT 4 08-JUL-20 6F2F 1 COMPND HETNAM REVDAT 3 16-OCT-19 6F2F 1 REMARK REVDAT 2 29-MAY-19 6F2F 1 COMPND HETNAM REVDAT 1 03-OCT-18 6F2F 0 JRNL AUTH S.ENGILBERGE,F.RIOBE,T.WAGNER,S.DI PIETRO,C.BREYTON, JRNL AUTH 2 B.FRANZETTI,S.SHIMA,E.GIRARD,E.DUMONT,O.MAURY JRNL TITL UNVEILING THE BINDING MODES OF THE CRYSTALLOPHORE, A JRNL TITL 2 TERBIUM-BASED NUCLEATING AND PHASING MOLECULAR AGENT FOR JRNL TITL 3 PROTEIN CRYSTALLOGRAPHY. JRNL REF CHEMISTRY V. 24 9739 2018 JRNL REFN ISSN 1521-3765 JRNL PMID 29806881 JRNL DOI 10.1002/CHEM.201802172 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 121190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6066 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.23 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 8548 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2236 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8116 REMARK 3 BIN R VALUE (WORKING SET) : 0.2233 REMARK 3 BIN FREE R VALUE : 0.2293 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.05 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 432 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3942 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 614 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26680 REMARK 3 B22 (A**2) : 2.26680 REMARK 3 B33 (A**2) : -4.53350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.061 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.058 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.062 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.055 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8261 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 14969 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1800 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 97 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1173 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8261 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 505 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9694 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.57 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.51 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 33.8662 26.6453 -14.5275 REMARK 3 T TENSOR REMARK 3 T11: -0.0870 T22: 0.0031 REMARK 3 T33: -0.0756 T12: -0.0214 REMARK 3 T13: -0.0016 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.3906 L22: 0.6478 REMARK 3 L33: 0.8081 L12: 0.1752 REMARK 3 L13: -0.3695 L23: 0.1274 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: 0.2478 S13: -0.0321 REMARK 3 S21: -0.0579 S22: 0.0334 S23: -0.0290 REMARK 3 S31: 0.0276 S32: -0.0130 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 63.3714 29.8469 -14.9588 REMARK 3 T TENSOR REMARK 3 T11: -0.1175 T22: 0.0075 REMARK 3 T33: -0.0642 T12: 0.0060 REMARK 3 T13: 0.0267 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.7920 L22: 0.7791 REMARK 3 L33: 0.3718 L12: 0.5855 REMARK 3 L13: -0.2535 L23: 0.0438 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: 0.0839 S13: -0.2702 REMARK 3 S21: -0.0024 S22: 0.0130 S23: -0.1082 REMARK 3 S31: 0.0635 S32: -0.0228 S33: 0.0437 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 67.8539 60.5357 -13.8118 REMARK 3 T TENSOR REMARK 3 T11: -0.0615 T22: -0.0293 REMARK 3 T33: -0.0896 T12: 0.0347 REMARK 3 T13: 0.0399 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9164 L22: 1.2686 REMARK 3 L33: 1.1271 L12: -0.1233 REMARK 3 L13: -0.4204 L23: 0.6740 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: 0.0783 S13: 0.1672 REMARK 3 S21: -0.1357 S22: 0.0128 S23: -0.0513 REMARK 3 S31: -0.2334 S32: -0.0444 S33: -0.0880 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 48.8251 45.1621 -9.7708 REMARK 3 T TENSOR REMARK 3 T11: -0.0778 T22: 0.0969 REMARK 3 T33: -0.0480 T12: 0.0061 REMARK 3 T13: -0.0703 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 1.1157 L22: 0.4496 REMARK 3 L33: 0.0000 L12: -0.5993 REMARK 3 L13: 0.0165 L23: -0.5994 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.0141 S13: 0.0466 REMARK 3 S21: 0.2048 S22: 0.0207 S23: 0.2318 REMARK 3 S31: -0.0857 S32: 0.1819 S33: -0.0151 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97974 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1G2I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 TO 2.4 AMMONIUM SULFATE, 0.2 M REMARK 280 SODIUM POTASSIUM TARTRATE, 100 MM TRISODIUM CITRATE DEHYDRATE PH REMARK 280 5.6. 10 MM TB-XO4 WERE SOLUBILIZED WITH THE PROTEIN SOLUTION REMARK 280 PRIOR TO PERFORM CRYSTALLIZATION DROPS., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.43300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 62.29400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.29400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.21650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.29400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 62.29400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.64950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.29400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.29400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.21650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 62.29400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.29400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 96.64950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.43300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 100 -115.45 59.97 REMARK 500 CYS B 100 -114.71 58.52 REMARK 500 CYS C 100 -113.98 58.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 510 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7MT A 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 A 202 O1 REMARK 620 2 7MT A 201 N23 71.6 REMARK 620 3 7MT A 201 N02 157.2 89.9 REMARK 620 4 7MT A 201 N06 134.6 126.9 67.3 REMARK 620 5 7MT A 201 N09 111.6 62.9 68.9 64.2 REMARK 620 6 7MT A 201 O26 69.9 68.5 91.3 151.6 126.9 REMARK 620 7 7MT A 201 N17 119.7 124.6 60.1 85.6 127.8 67.1 REMARK 620 8 7MT A 201 O27 80.3 146.2 111.6 86.3 148.3 84.6 55.8 REMARK 620 9 SO4 A 202 O4 59.9 91.1 135.8 77.2 72.4 129.7 143.4 90.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 204 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 433 O REMARK 620 2 HOH A 441 O 76.7 REMARK 620 3 HOH B 474 O 120.7 87.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7MT B 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 B 204 O1 REMARK 620 2 7MT B 201 N23 72.9 REMARK 620 3 7MT B 201 N02 155.7 86.9 REMARK 620 4 7MT B 201 N06 136.8 123.5 65.9 REMARK 620 5 7MT B 201 N09 112.3 61.2 66.8 62.6 REMARK 620 6 7MT B 201 O26 68.3 70.6 92.7 151.5 127.8 REMARK 620 7 7MT B 201 N17 120.0 122.5 60.2 86.5 126.1 66.0 REMARK 620 8 7MT B 201 O27 80.9 147.7 112.5 88.6 149.4 82.5 56.6 REMARK 620 9 SO4 B 204 O3 59.3 89.4 135.4 79.8 72.6 127.5 147.5 93.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7MT C 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 C 204 O2 REMARK 620 2 7MT C 201 N23 90.5 REMARK 620 3 7MT C 201 N02 138.5 88.8 REMARK 620 4 7MT C 201 N06 84.9 125.9 62.7 REMARK 620 5 7MT C 201 N09 74.7 65.1 67.6 61.7 REMARK 620 6 7MT C 201 O26 129.2 70.7 89.2 144.4 129.7 REMARK 620 7 7MT C 201 N17 148.6 120.4 55.2 81.4 121.5 64.0 REMARK 620 8 7MT C 201 O27 87.8 146.3 114.0 87.5 145.3 84.5 63.5 REMARK 620 9 SO4 C 204 O1 58.8 75.5 157.6 139.6 117.5 70.8 119.9 75.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TB A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7MT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2HA C 205 DBREF 6F2F A 1 166 UNP O59413 DEGLY_PYRHO 1 166 DBREF 6F2F B 1 166 UNP O59413 DEGLY_PYRHO 1 166 DBREF 6F2F C 1 166 UNP O59413 DEGLY_PYRHO 1 166 SEQRES 1 A 166 MET LYS VAL LEU PHE LEU THR ALA ASN GLU PHE GLU ASP SEQRES 2 A 166 VAL GLU LEU ILE TYR PRO TYR HIS ARG LEU LYS GLU GLU SEQRES 3 A 166 GLY HIS GLU VAL TYR ILE ALA SER PHE GLU ARG GLY THR SEQRES 4 A 166 ILE THR GLY LYS HIS GLY TYR SER VAL LYS VAL ASP LEU SEQRES 5 A 166 THR PHE ASP LYS VAL ASN PRO GLU GLU PHE ASP ALA LEU SEQRES 6 A 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ARG VAL ARG LEU SEQRES 7 A 166 ASN GLU LYS ALA VAL SER ILE ALA ARG LYS MET PHE SER SEQRES 8 A 166 GLU GLY LYS PRO VAL ALA SER ILE CYS HIS GLY PRO GLN SEQRES 9 A 166 ILE LEU ILE SER ALA GLY VAL LEU ARG GLY ARG LYS GLY SEQRES 10 A 166 THR SER TYR PRO GLY ILE LYS ASP ASP MET ILE ASN ALA SEQRES 11 A 166 GLY VAL GLU TRP VAL ASP ALA GLU VAL VAL VAL ASP GLY SEQRES 12 A 166 ASN TRP VAL SER SER ARG VAL PRO ALA ASP LEU TYR ALA SEQRES 13 A 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS SEQRES 1 B 166 MET LYS VAL LEU PHE LEU THR ALA ASN GLU PHE GLU ASP SEQRES 2 B 166 VAL GLU LEU ILE TYR PRO TYR HIS ARG LEU LYS GLU GLU SEQRES 3 B 166 GLY HIS GLU VAL TYR ILE ALA SER PHE GLU ARG GLY THR SEQRES 4 B 166 ILE THR GLY LYS HIS GLY TYR SER VAL LYS VAL ASP LEU SEQRES 5 B 166 THR PHE ASP LYS VAL ASN PRO GLU GLU PHE ASP ALA LEU SEQRES 6 B 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ARG VAL ARG LEU SEQRES 7 B 166 ASN GLU LYS ALA VAL SER ILE ALA ARG LYS MET PHE SER SEQRES 8 B 166 GLU GLY LYS PRO VAL ALA SER ILE CYS HIS GLY PRO GLN SEQRES 9 B 166 ILE LEU ILE SER ALA GLY VAL LEU ARG GLY ARG LYS GLY SEQRES 10 B 166 THR SER TYR PRO GLY ILE LYS ASP ASP MET ILE ASN ALA SEQRES 11 B 166 GLY VAL GLU TRP VAL ASP ALA GLU VAL VAL VAL ASP GLY SEQRES 12 B 166 ASN TRP VAL SER SER ARG VAL PRO ALA ASP LEU TYR ALA SEQRES 13 B 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS SEQRES 1 C 166 MET LYS VAL LEU PHE LEU THR ALA ASN GLU PHE GLU ASP SEQRES 2 C 166 VAL GLU LEU ILE TYR PRO TYR HIS ARG LEU LYS GLU GLU SEQRES 3 C 166 GLY HIS GLU VAL TYR ILE ALA SER PHE GLU ARG GLY THR SEQRES 4 C 166 ILE THR GLY LYS HIS GLY TYR SER VAL LYS VAL ASP LEU SEQRES 5 C 166 THR PHE ASP LYS VAL ASN PRO GLU GLU PHE ASP ALA LEU SEQRES 6 C 166 VAL LEU PRO GLY GLY ARG ALA PRO GLU ARG VAL ARG LEU SEQRES 7 C 166 ASN GLU LYS ALA VAL SER ILE ALA ARG LYS MET PHE SER SEQRES 8 C 166 GLU GLY LYS PRO VAL ALA SER ILE CYS HIS GLY PRO GLN SEQRES 9 C 166 ILE LEU ILE SER ALA GLY VAL LEU ARG GLY ARG LYS GLY SEQRES 10 C 166 THR SER TYR PRO GLY ILE LYS ASP ASP MET ILE ASN ALA SEQRES 11 C 166 GLY VAL GLU TRP VAL ASP ALA GLU VAL VAL VAL ASP GLY SEQRES 12 C 166 ASN TRP VAL SER SER ARG VAL PRO ALA ASP LEU TYR ALA SEQRES 13 C 166 TRP MET ARG GLU PHE VAL LYS LEU LEU LYS HET 7MT A 201 53 HET SO4 A 202 5 HET SO4 A 203 5 HET TB A 204 1 HET 7MT B 201 53 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET 7MT C 201 53 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 C 204 5 HET 2HA C 205 14 HETNAM 7MT TB-XO4 HETNAM SO4 SULFATE ION HETNAM TB TERBIUM(III) ION HETNAM 2HA DIHYDROXYACETONE FORMUL 4 7MT 3(C20 H23 N5 O4 TB 5+) FORMUL 5 SO4 8(O4 S 2-) FORMUL 7 TB TB 3+ FORMUL 16 2HA C3 H6 O3 FORMUL 17 HOH *614(H2 O) HELIX 1 AA1 GLU A 12 GLU A 26 1 15 HELIX 2 AA2 ASP A 55 VAL A 57 5 3 HELIX 3 AA3 ASN A 58 PHE A 62 5 5 HELIX 4 AA4 ARG A 71 ARG A 77 1 7 HELIX 5 AA5 ASN A 79 GLU A 92 1 14 HELIX 6 AA6 PRO A 103 GLY A 110 1 8 HELIX 7 AA7 TYR A 120 GLY A 122 5 3 HELIX 8 AA8 ILE A 123 ALA A 130 1 8 HELIX 9 AA9 VAL A 150 ALA A 152 5 3 HELIX 10 AB1 ASP A 153 LEU A 165 1 13 HELIX 11 AB2 GLU B 12 GLU B 26 1 15 HELIX 12 AB3 ASP B 55 VAL B 57 5 3 HELIX 13 AB4 ASN B 58 PHE B 62 5 5 HELIX 14 AB5 ARG B 71 ARG B 77 1 7 HELIX 15 AB6 ASN B 79 GLU B 92 1 14 HELIX 16 AB7 PRO B 103 GLY B 110 1 8 HELIX 17 AB8 TYR B 120 GLY B 122 5 3 HELIX 18 AB9 ILE B 123 ALA B 130 1 8 HELIX 19 AC1 VAL B 150 ALA B 152 5 3 HELIX 20 AC2 ASP B 153 LEU B 165 1 13 HELIX 21 AC3 GLU C 12 GLU C 26 1 15 HELIX 22 AC4 ASP C 55 VAL C 57 5 3 HELIX 23 AC5 ASN C 58 PHE C 62 5 5 HELIX 24 AC6 ARG C 71 ARG C 77 1 7 HELIX 25 AC7 ASN C 79 GLU C 92 1 14 HELIX 26 AC8 PRO C 103 GLY C 110 1 8 HELIX 27 AC9 TYR C 120 GLY C 122 5 3 HELIX 28 AD1 ILE C 123 ALA C 130 1 8 HELIX 29 AD2 VAL C 150 ALA C 152 5 3 HELIX 30 AD3 ASP C 153 LYS C 166 1 14 SHEET 1 AA1 7 LEU A 52 THR A 53 0 SHEET 2 AA1 7 GLU A 29 SER A 34 1 O ILE A 32 N LEU A 52 SHEET 3 AA1 7 LYS A 2 LEU A 6 1 N VAL A 3 O GLU A 29 SHEET 4 AA1 7 ALA A 64 LEU A 67 1 O ALA A 64 N LEU A 4 SHEET 5 AA1 7 VAL A 96 ILE A 99 1 O ALA A 97 N LEU A 67 SHEET 6 AA1 7 TRP A 145 SER A 148 1 O VAL A 146 N VAL A 96 SHEET 7 AA1 7 VAL A 140 ASP A 142 -1 N ASP A 142 O TRP A 145 SHEET 1 AA2 2 GLY A 38 THR A 41 0 SHEET 2 AA2 2 SER A 47 VAL A 50 -1 O VAL A 50 N GLY A 38 SHEET 1 AA3 2 LYS A 116 GLY A 117 0 SHEET 2 AA3 2 GLU A 133 TRP A 134 1 O GLU A 133 N GLY A 117 SHEET 1 AA4 7 LEU B 52 THR B 53 0 SHEET 2 AA4 7 GLU B 29 SER B 34 1 O ILE B 32 N LEU B 52 SHEET 3 AA4 7 LYS B 2 LEU B 6 1 N VAL B 3 O GLU B 29 SHEET 4 AA4 7 ALA B 64 LEU B 67 1 O ALA B 64 N LEU B 4 SHEET 5 AA4 7 VAL B 96 ILE B 99 1 O ALA B 97 N LEU B 67 SHEET 6 AA4 7 TRP B 145 SER B 148 1 O VAL B 146 N VAL B 96 SHEET 7 AA4 7 VAL B 140 ASP B 142 -1 N ASP B 142 O TRP B 145 SHEET 1 AA5 2 GLY B 38 THR B 41 0 SHEET 2 AA5 2 SER B 47 VAL B 50 -1 O VAL B 50 N GLY B 38 SHEET 1 AA6 2 LYS B 116 GLY B 117 0 SHEET 2 AA6 2 GLU B 133 TRP B 134 1 O GLU B 133 N GLY B 117 SHEET 1 AA7 7 LEU C 52 THR C 53 0 SHEET 2 AA7 7 GLU C 29 SER C 34 1 O ILE C 32 N LEU C 52 SHEET 3 AA7 7 LYS C 2 LEU C 6 1 N VAL C 3 O GLU C 29 SHEET 4 AA7 7 ALA C 64 LEU C 67 1 O ALA C 64 N LEU C 4 SHEET 5 AA7 7 VAL C 96 ILE C 99 1 O ALA C 97 N LEU C 67 SHEET 6 AA7 7 TRP C 145 SER C 148 1 O VAL C 146 N VAL C 96 SHEET 7 AA7 7 VAL C 140 ASP C 142 -1 N ASP C 142 O TRP C 145 SHEET 1 AA8 2 GLY C 38 THR C 41 0 SHEET 2 AA8 2 SER C 47 VAL C 50 -1 O VAL C 50 N GLY C 38 SHEET 1 AA9 2 LYS C 116 GLY C 117 0 SHEET 2 AA9 2 GLU C 133 TRP C 134 1 O GLU C 133 N GLY C 117 LINK TB 7MT A 201 O1 SO4 A 202 1555 1555 2.39 LINK TB 7MT A 201 O4 SO4 A 202 1555 1555 2.43 LINK TB TB A 204 O HOH A 433 1555 7555 3.25 LINK TB TB A 204 O HOH A 441 1555 7555 2.91 LINK TB TB A 204 O HOH B 474 1555 6454 2.76 LINK TB 7MT B 201 O1 SO4 B 204 1555 1555 2.41 LINK TB 7MT B 201 O3 SO4 B 204 1555 1555 2.42 LINK TB 7MT C 201 O2 SO4 C 204 1555 1555 2.38 LINK TB 7MT C 201 O1 SO4 C 204 1555 1555 2.50 SITE 1 AC1 6 ALA A 8 ASN A 9 PHE A 35 GLU A 36 SITE 2 AC1 6 ARG A 75 SO4 A 202 SITE 1 AC2 4 ASN A 9 ARG A 75 7MT A 201 HOH A 362 SITE 1 AC3 1 ARG A 149 SITE 1 AC4 2 HOH A 441 HOH B 474 SITE 1 AC5 6 ALA B 8 ASN B 9 PHE B 35 GLU B 36 SITE 2 AC5 6 ARG B 75 SO4 B 204 SITE 1 AC6 1 ARG B 149 SITE 1 AC7 4 LYS B 2 TYR B 31 GLU B 61 HOH B 411 SITE 1 AC8 5 ASN B 9 ARG B 75 7MT B 201 HOH B 356 SITE 2 AC8 5 HOH B 369 SITE 1 AC9 6 ALA C 8 ASN C 9 PHE C 35 GLU C 36 SITE 2 AC9 6 ARG C 75 SO4 C 204 SITE 1 AD1 2 ARG C 149 HOH C 329 SITE 1 AD2 4 LYS B 43 ARG C 71 ARG C 75 HOH C 350 SITE 1 AD3 5 ASN C 9 ARG C 75 7MT C 201 HOH C 327 SITE 2 AD3 5 HOH C 384 SITE 1 AD4 10 PHE A 90 SER A 91 VAL A 111 ARG A 113 SITE 2 AD4 10 ARG A 115 ILE C 128 GLY C 131 VAL C 132 SITE 3 AD4 10 HOH C 347 HOH C 359 CRYST1 124.588 124.588 128.866 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007760 0.00000